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Search for Biological Sequences disclosed in Patents

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Data obtained from: WIPO-PCT
8 sequences found in this patent (in total)

Displaying 8 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
72
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP002729
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP002516
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      AP012030
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP002185
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      AM946981
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      FN649414
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP001383
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      AP010958
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP000819
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP001665
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP001396
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218359353
      CU928160
    • Hit length
      4,700,560 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CU928160
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CU928145
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli SE11

    Escherichia coli SE11

    • Public DB hit
      GI:209910450
      AP009240
    • Hit length
      4,887,515 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      AP009240
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP000948
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP000946
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157076741
      CP000800
    • Hit length
      4,979,619 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP000800
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP000802
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella flexneri 5 str. 8401

    Shigella flexneri 5 str. 8401

    • Public DB hit
      GI:110613622
      CP000266
    • Hit length
      4,574,284 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      CP000266
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella flexneri 2a str. 301

    Shigella flexneri 2a str. 301

    • Public DB hit
      GI:24080789
      AE005674
    • Hit length
      4,607,203 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      AE005674
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      AP009048
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      U00096
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella flexneri 2a str. 2457T

    Shigella flexneri 2a str. 2457T

    • Public DB hit
      GI:30043918
      AE014073
    • Hit length
      4,599,354 bp
    • E Value
      9.69E-18
    • BLAST Score
      97.1 bits
    • Similarity
      98.18%
    • Coverage
      76.39%
    • Alignment (schematic)

      SEQ ID NO 1
      76.39% cov
      AE014073
      0% cov
    • Alignment Length
      55 bp
    • CIGAR string
      50MN4M17H mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
71
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP002797
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP002729
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP002516
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      AP012030
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP002185
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      AM946981
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP001855
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      FN649414
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP002167
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP001671
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP001969
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP001846
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      FN554766
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP001383
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      AP009378
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      AP010960
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      AP010958
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      AP010953
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP001368
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP000819
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP001665
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      CP001396
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209763525
      EU897524
    • Hit length
      639 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 2
      70.42% cov
      EU897524
      7.82% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
77
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP002797
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP002729
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      AP012030
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      AM946981
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP001671
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP001846
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      FN554766
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      AP009378
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP001368
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP000819
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP001665
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP001396
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209746301
      EU906344
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      1,425 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      EU906344
      4.07% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli ED1a

    Escherichia coli ED1a

    • Public DB hit
      GI:218425442
      CU928162
    • Hit length
      5,209,548 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CU928162
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli IAI39

    Escherichia coli IAI39

    • Public DB hit
      GI:218368405
      CU928164
    • Hit length
      5,132,068 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CU928164
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia fergusonii ATCC 35469

    Escherichia fergusonii ATCC 35469

    • Public DB hit
      GI:218354981
      CU928158
    • Hit length
      4,588,711 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CU928158
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli O127:H6 str. E2348/69

    Escherichia coli O127:H6 str. E2348/69

    • Public DB hit
      GI:215263233
      FM180568
    • Hit length
      4,965,553 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      FM180568
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli O157:H7 str. EC4115

    Escherichia coli O157:H7 str. EC4115

    • Public DB hit
      GI:209157093
      CP001164
    • Hit length
      5,572,075 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP001164
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
  • Escherichia coli SMS-3-5

    Escherichia coli SMS-3-5

    • Public DB hit
      GI:170517292
      CP000970
    • Hit length
      5,068,389 bp
    • E Value
      2.33E-19
    • BLAST Score
      102.7 bits
    • Similarity
      98.31%
    • Coverage
      76.62%
    • Alignment (schematic)

      SEQ ID NO 3
      76.62% cov
      CP000970
      0% cov
    • Alignment Length
      59 bp
    • CIGAR string
      55MD3M18H mismatches: 0 - insertions: 0 - deletions: 1
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
71
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP002729
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      AP012030
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      AM946981
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP000819
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP001665
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP001396
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP000948
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      AP009048
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      U00096
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:431915
      V01498
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      7,742 bp
    • E Value
      1.22E-16
    • BLAST Score
      93.5 bits
    • Similarity
      100%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      V01498
      0.65% cov
    • Alignment Length
      50 bp
    • CIGAR string
      50M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      5.69E-15
    • BLAST Score
      87.9 bits
    • Similarity
      98%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP002797
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      38MN11M21H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      5.69E-15
    • BLAST Score
      87.9 bits
    • Similarity
      98%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP001855
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      38MN11M21H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      5.69E-15
    • BLAST Score
      87.9 bits
    • Similarity
      98%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP002167
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      38MN11M21H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      5.69E-15
    • BLAST Score
      87.9 bits
    • Similarity
      98%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP001671
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      38MN11M21H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      5.69E-15
    • BLAST Score
      87.9 bits
    • Similarity
      98%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP001969
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      38MN11M21H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      5.69E-15
    • BLAST Score
      87.9 bits
    • Similarity
      98%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP001846
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      38MN11M21H mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      5.69E-15
    • BLAST Score
      87.9 bits
    • Similarity
      98%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP001383
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      38MN11M21H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      5.69E-15
    • BLAST Score
      87.9 bits
    • Similarity
      98%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      AP009378
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      38MN11M21H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      5.69E-15
    • BLAST Score
      87.9 bits
    • Similarity
      98%
    • Coverage
      70.42%
    • Alignment (schematic)

      SEQ ID NO 4
      70.42% cov
      CP001368
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      38MN11M21H mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
70
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002797
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002729
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002516
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP012030
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002185
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AM946981
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001855
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FN649414
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002167
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001671
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001969
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001846
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FN554766
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001383
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP009378
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP010960
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP010958
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP010953
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001368
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000819
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001665
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001396
      0% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209746301
      EU906344
    • Hit length
      1,425 bp
    • E Value
      9.1E-28
    • BLAST Score
      130.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EU906344
      4.91% cov
    • Alignment Length
      70 bp
    • CIGAR string
      70M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
75
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002797
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002729
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002516
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AP012030
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002185
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AM946981
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001855
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FN649414
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001671
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001846
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001383
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AP009378
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AP010958
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AP010953
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001368
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP000819
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001665
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001396
      0% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209746301
      EU906344
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      1,425 bp
    • E Value
      1.7E-30
    • BLAST Score
      139.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU906344
      5.26% cov
    • Alignment Length
      75 bp
    • CIGAR string
      75M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
70
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP002797
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1

    Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1

    • Public DB hit
      GI:332986951
      CP002614
    • Hit length
      4,817,868 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP002614
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP002729
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Cronobacter turicensis z3032

    Cronobacter turicensis z3032

    • Public DB hit
      GI:323575285
      FN543093
    • Hit length
      4,384,463 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      FN543093
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP002516
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74

    Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74

    • Public DB hit
      GI:323128316
      CP002487
    • Hit length
      4,878,013 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP002487
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1

    Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1

    • Public DB hit
      GI:320087007
      FR775230
    • Hit length
      105,723 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      FR775230
      0.05% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
    • Hit length
      4,621,430 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      AP012030
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP002185
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      AM946981
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP001855
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Salmonella enterica subsp. enterica serovar Typhimurium str. T000240

    Salmonella enterica subsp. enterica serovar Typhimurium str. T000240

    • Public DB hit
      GI:312910970
      AP011957
    • Hit length
      4,954,814 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      AP011957
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      FN649414
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP002167
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP001671
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

    Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

    • Public DB hit
      GI:301156631
      FQ312003
    • Hit length
      4,878,012 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      FQ312003
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacter cloacae subsp. cloacae NCTC 9394

    Enterobacter cloacae subsp. cloacae NCTC 9394

    • Public DB hit
      GI:295095013
      FP929040
    • Hit length
      4,908,759 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      FP929040
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP001969
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP001846
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Klebsiella variicola At-22

    Klebsiella variicola At-22

    • Public DB hit
      GI:288887617
      CP001891
    • Hit length
      5,458,505 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP001891
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      FN554766
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Citrobacter rodentium ICC168

    Citrobacter rodentium ICC168

    • Public DB hit
      GI:282947233
      FN543502
    • Hit length
      5,346,659 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      FN543502
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      CP001383
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.54E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      68.57%
    • Alignment (schematic)

      SEQ ID NO 7
      68.57% cov
      AP009378
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M22H mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
69
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP002797
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP002729
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP002516
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      AP012030
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP002185
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      AM946981
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP001855
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      FN649414
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP002167
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP001671
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP001969
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP001846
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP001383
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      AP009378
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      AP010958
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP001368
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP000819
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP001665
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      CP001396
      0% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209763045
      EU897279
      1 of 4 hits reported for Escherichia coli.
    • Hit length
      1,254 bp
    • E Value
      1.51E-15
    • BLAST Score
      89.8 bits
    • Similarity
      100%
    • Coverage
      69.57%
    • Alignment (schematic)

      SEQ ID NO 8
      69.57% cov
      EU897279
      3.83% cov
    • Alignment Length
      48 bp
    • CIGAR string
      48M21H mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
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