Loading...

Search for Biological Sequences disclosed in Patents

Discover PatSeq Finder: Search and analyse similar sequence matches in the Lens PatSeq database effortlessly using PatSeq Finder. Scan 480M+ biological sequences disclosed in patents on a privacy-assured platform and give your IP strategy the edge.

View PatSeq Dismiss
Data obtained from: DDBJ Pat NCBI GenBank EMBL-EBI Pat
4 sequences found in this patent (in total)

Displaying 4 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
900
Type
nucleotide
Locations
Undetermined

Declared organism:
Not specified

Determined organism:
  • Plasmodium berghei

    Plasmodium berghei

    • Public DB hit
      GI:160177
      M25445
      1 of 5 hits reported for Plasmodium berghei.
    • Hit length
      1,114 bp
    • E Value
      0E0
    • BLAST Score
      1,640.9 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      M25445
      80.79% cov
    • Alignment Length
      900 bp
    • CIGAR string
      300MN158MN119MN261MN58M mismatches: 4 - insertions: 0 - deletions: 0
  • Plasmodium berghei ANKA

    Plasmodium berghei ANKA

    • Public DB hit
      GI:68076352
      XM_675004
    • Hit length
      735 bp
    • E Value
      0E0
    • BLAST Score
      1,242.1 bits
    • Similarity
      97.92%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 1
      80% cov
      XM_675004
      97.14% cov
    • Alignment Length
      721 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
2
Length
272
Type
peptide
Locations
Undetermined

Declared organism:
Not specified

Determined organism:
  • Plasmodium berghei

    Plasmodium berghei

    • Public DB hit
      GI:160200
      AAA29541
      1 of 2 hits reported for Plasmodium berghei.
    • Hit length
      332 aa
    • E Value
      6.46E-139
    • BLAST Score
      498.4 bits
    • Similarity
      99.63%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAA29541
      81.93% cov
    • Alignment Length
      272 aa
    • CIGAR string
      62MN209M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
Tools
PatSeq Finder
SEQ ID NO
3
Length
587
Type
nucleotide
Locations
Undetermined

Declared organism:
Not specified

Determined organism:
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:145830
      M17874
      1 of 19 hits reported for Escherichia coli.
    • Hit length
      588 bp
    • E Value
      0E0
    • BLAST Score
      1,085.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      M17874
      99.83% cov
    • Alignment Length
      587 bp
    • CIGAR string
      587M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC 1392/75

    Escherichia coli ETEC 1392/75

    • Public DB hit
      GI:297374297
      FN822745
    • Hit length
      101,857 bp
    • E Value
      0E0
    • BLAST Score
      1,050 bits
    • Similarity
      98.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FN822745
      0.58% cov
    • Alignment Length
      587 bp
    • CIGAR string
      31MN51MN31MN304MN129MN28MD7M mismatches: 5 - insertions: 0 - deletions: 1
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157076497
      CP000795
    • Hit length
      79,237 bp
    • E Value
      0E0
    • BLAST Score
      1,050 bits
    • Similarity
      98.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000795
      0.74% cov
    • Alignment Length
      587 bp
    • CIGAR string
      31MN51MN31MN304MN129MN28MD7M mismatches: 5 - insertions: 0 - deletions: 1
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309705521
      FN649417
      1 of 3 hits reported for Escherichia coli ETEC H10407.
    • Hit length
      66,681 bp
    • E Value
      0E0
    • BLAST Score
      1,044.5 bits
    • Similarity
      98.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FN649417
      0.88% cov
    • Alignment Length
      587 bp
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332346629
      CP002732
    • Hit length
      81,475 bp
    • E Value
      0E0
    • BLAST Score
      1,024.2 bits
    • Similarity
      98.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP002732
      0.72% cov
    • Alignment Length
      587 bp
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
124
Type
peptide
Locations
Undetermined

Declared organism:
Not specified

Determined organism:
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:325530040
      P0CK94
      1 of 9 hits reported for Escherichia coli.
    • Hit length
      124 aa
    • E Value
      9.88E-68
    • BLAST Score
      260.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      P0CK94
      100% cov
    • Alignment Length
      124 aa
    • CIGAR string
      124M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:224796281
      ACN62546
      1 of 4 hits reported for synthetic construct.
    • Hit length
      305 aa
    • E Value
      2.39E-67
    • BLAST Score
      258.8 bits
    • Similarity
      98.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACN62546
      40.66% cov
    • Alignment Length
      124 aa
    • CIGAR string
      N32MN61MN28M mismatches: 3 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC 1392/75

    Escherichia coli ETEC 1392/75

    • Public DB hit
      GI:298206428
      YP_003717530
    • Hit length
      124 aa
    • E Value
      1.69E-66
    • BLAST Score
      256.1 bits
    • Similarity
      99.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_003717530
      100% cov
    • Alignment Length
      124 aa
    • CIGAR string
      5MN27MN90M mismatches: 2 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:268507197
      YP_003293996
    • Hit length
      124 aa
    • E Value
      4.59E-65
    • BLAST Score
      251.5 bits
    • Similarity
      98.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_003293996
      100% cov
    • Alignment Length
      124 aa
  • Vibrio phage CTX

    Vibrio phage CTX

    • Public DB hit
      GI:254681364
      ACT78932
    • Hit length
      124 aa
    • E Value
      4.42E-55
    • BLAST Score
      218.4 bits
    • Similarity
      90.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACT78932
      100% cov
    • Alignment Length
      124 aa
  • Vibrio cholerae BX 330286

    Vibrio cholerae BX 330286

    • Public DB hit
      GI:194220295
      ACF35005
    • Hit length
      124 aa
    • E Value
      5.53E-55
    • BLAST Score
      218 bits
    • Similarity
      91.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACF35005
      100% cov
    • Alignment Length
      124 aa
  • Vibrio cholerae

    Vibrio cholerae

    • Public DB hit
      GI:258562264
      ACV81852
    • Hit length
      123 aa
    • E Value
      1.57E-54
    • BLAST Score
      216.5 bits
    • Similarity
      90.98%
    • Coverage
      98.39%
    • Alignment (schematic)

      SEQ ID NO 4
      98.39% cov
      ACV81852
      99.19% cov
    • Alignment Length
      122 aa
  • Vibrio cholerae B33

    Vibrio cholerae B33

    • Public DB hit
      GI:153824211
      ZP_01976878
    • Hit length
      124 aa
    • E Value
      1.82E-54
    • BLAST Score
      216.1 bits
    • Similarity
      90.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_01976878
      100% cov
    • Alignment Length
      124 aa
  • Vibrio cholerae O1 biovar El Tor str. N16961

    Vibrio cholerae O1 biovar El Tor str. N16961

    • Public DB hit
      GI:15641467
      NP_231099
    • Hit length
      124 aa
    • E Value
      1.89E-54
    • BLAST Score
      216.1 bits
    • Similarity
      89.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_231099
      100% cov
    • Alignment Length
      124 aa
  • Vibrio cholerae O37

    Vibrio cholerae O37

    • Public DB hit
      GI:808900
      BAA06289
    • Hit length
      124 aa
    • E Value
      2.3E-54
    • BLAST Score
      215.7 bits
    • Similarity
      90.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      BAA06289
      100% cov
    • Alignment Length
      124 aa
Occurrence
48 times in PatSeqDB
Tools
PatSeq Finder

Filter Sequences

Clear

Sign in to the Lens

Forgot Password? Register New Account

Language Improvements

We have been busy updating our localisation and all existing languages.

Much of these translations have been done using machine translation with a check from a native speaker, however not all elements of the UI have been checked for each language. If you see a term that is not translated correctly or should be improved, please contact Support.

  Don't show again
Feedback