Patents
US 9222140 B2

Primers For Detecting Plasmodium

  • Published: Dec 29, 2015
  • Earliest Priority: May 28 2007
  • Family: 28
  • Cited Works: 13
  • Cited by: 0
  • Cites: 6
  • Sequences: 47
  • Additional Info: Cited Works Full text
Granted Patent
US 9222140 B2
169-990-211-175-308
Data obtained from: DDBJ Pat USPTO Fulltext NCBI GenBank EMBL-EBI Pat
47 sequences found in this patent (in total)

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Download sequences in fasta format: 47 nucleotides

Displaying 1 - 10 of 47 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
21
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Hepatocystis sp. CH

    Hepatocystis sp. CH

    • Public DB hit
      GI:333656514
      HQ605039
    • Hit length
      961 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      HQ605039
      2.19% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium relictum

    Plasmodium relictum

    • Public DB hit
      GI:301139720
      HM242422
      1 of 7 hits reported for Plasmodium relictum.
    • Hit length
      241 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      HM242422
      8.71% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium ovale

    Plasmodium ovale

    • Public DB hit
      GI:291173118
      GQ231515
      1 of 16 hits reported for Plasmodium ovale.
    • Hit length
      728 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      GQ231515
      2.88% cov
    • Alignment Length
      21 bp
  • Plasmodium inui

    Plasmodium inui

    • Public DB hit
      GI:295983097
      HM032051
    • Hit length
      2,082 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      HM032051
      1.01% cov
    • Alignment Length
      21 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
2
Length
20
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Hepatocystis sp. CH

    Hepatocystis sp. CH

    • Public DB hit
      GI:333656514
      HQ605039
    • Hit length
      961 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      HQ605039
      2.08% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium gaboni

    Plasmodium gaboni

    • Public DB hit
      GI:311088633
      GU815538
      1 of 6 hits reported for Plasmodium gaboni.
    • Hit length
      487 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU815538
      4.11% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium vivax

    Plasmodium vivax

    • Public DB hit
      GI:311088628
      GU815533
    • Hit length
      711 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU815533
      2.81% cov
    • Alignment Length
      20 bp
  • Plasmodium ovale

    Plasmodium ovale

    • Public DB hit
      GI:311088627
      GU815532
      1 of 13 hits reported for Plasmodium ovale.
    • Hit length
      722 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU815532
      2.77% cov
    • Alignment Length
      20 bp
  • Plasmodium malariae

    Plasmodium malariae

    • Public DB hit
      GI:311088626
      GU815531
      1 of 2 hits reported for Plasmodium malariae.
    • Hit length
      751 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU815531
      2.66% cov
    • Alignment Length
      20 bp
  • Plasmodium billcollinsi

    Plasmodium billcollinsi

    • Public DB hit
      GI:311088623
      GU815528
    • Hit length
      717 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU815528
      2.79% cov
    • Alignment Length
      20 bp
  • Plasmodium reichenowi

    Plasmodium reichenowi

    • Public DB hit
      GI:311088622
      GU815527
    • Hit length
      715 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU815527
      2.8% cov
    • Alignment Length
      20 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
3
Length
45
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
4
Length
41
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
5
Length
20
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Plasmodium yoelii yoelii 17XNL

    Plasmodium yoelii yoelii 17XNL

    • Public DB hit
      GI:82541496
      XM_719894
    • Hit length
      321 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_719894
      6.23% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium vivax

    Plasmodium vivax

    • Public DB hit
      GI:311088628
      GU815533
    • Hit length
      711 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU815533
      2.81% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium ovale

    Plasmodium ovale

    • Public DB hit
      GI:311088627
      GU815532
      1 of 10 hits reported for Plasmodium ovale.
    • Hit length
      722 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU815532
      2.77% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium malariae

    Plasmodium malariae

    • Public DB hit
      GI:311088626
      GU815531
      1 of 2 hits reported for Plasmodium malariae.
    • Hit length
      751 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU815531
      2.66% cov
    • Alignment Length
      20 bp
  • Plasmodium gaboni

    Plasmodium gaboni

    • Public DB hit
      GI:311088624
      GU815529
      1 of 3 hits reported for Plasmodium gaboni.
    • Hit length
      460 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU815529
      4.35% cov
    • Alignment Length
      20 bp
  • Plasmodium billcollinsi

    Plasmodium billcollinsi

    • Public DB hit
      GI:311088623
      GU815528
    • Hit length
      717 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU815528
      2.79% cov
    • Alignment Length
      20 bp
  • Plasmodium relictum

    Plasmodium relictum

    • Public DB hit
      GI:301139720
      HM242422
      1 of 7 hits reported for Plasmodium relictum.
    • Hit length
      241 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      HM242422
      8.3% cov
    • Alignment Length
      20 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
6
Length
24
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Aulacodiscus orientalis

    Aulacodiscus orientalis

    • Public DB hit
      GI:329343481
      HQ912652
    • Hit length
      1,646 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ912652
      1.46% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Paranarthrura sp. KK-2011

    Paranarthrura sp. KK-2011

    • Public DB hit
      GI:327342686
      AB618196
    • Hit length
      2,395 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AB618196
      1% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • uncultured eukaryote

    uncultured eukaryote

    • Public DB hit
      GI:291497285
      GU824916
      1 of 3 hits reported for uncultured eukaryote.
    • Hit length
      1,397 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GU824916
      1.72% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • uncultured dinoflagellate

    uncultured dinoflagellate

    • Public DB hit
      GI:291492763
      GU820390
      1 of 3 hits reported for uncultured dinoflagellate.
    • Hit length
      1,387 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GU820390
      1.73% cov
    • Alignment Length
      24 bp
  • Leptosphaeria maculans JN3

    Leptosphaeria maculans JN3

    • Public DB hit
      GI:312216156
      FP929128
      1 of 7 hits reported for Leptosphaeria maculans JN3.
    • Hit length
      1,186,800 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FP929128
      0% cov
    • Alignment Length
      24 bp
  • uncultured cercozoan

    uncultured cercozoan

    • Public DB hit
      GI:311409110
      HQ219347
    • Hit length
      2,567 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ219347
      0.93% cov
    • Alignment Length
      24 bp
  • Plasmodium gaboni

    Plasmodium gaboni

    • Public DB hit
      GI:311088633
      GU815538
      1 of 3 hits reported for Plasmodium gaboni.
    • Hit length
      487 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GU815538
      4.93% cov
    • Alignment Length
      24 bp
  • Plasmodium billcollinsi

    Plasmodium billcollinsi

    • Public DB hit
      GI:311088632
      GU815537
    • Hit length
      750 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GU815537
      3.2% cov
    • Alignment Length
      24 bp
  • Plasmodium reichenowi

    Plasmodium reichenowi

    • Public DB hit
      GI:311088631
      GU815536
    • Hit length
      762 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GU815536
      3.15% cov
    • Alignment Length
      24 bp
  • Plasmodium vivax

    Plasmodium vivax

    • Public DB hit
      GI:311088628
      GU815533
    • Hit length
      711 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GU815533
      3.38% cov
    • Alignment Length
      24 bp
  • Plasmodium ovale

    Plasmodium ovale

    • Public DB hit
      GI:311088627
      GU815532
    • Hit length
      722 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GU815532
      3.32% cov
    • Alignment Length
      24 bp
  • Plasmodium malariae

    Plasmodium malariae

    • Public DB hit
      GI:311088626
      GU815531
      1 of 2 hits reported for Plasmodium malariae.
    • Hit length
      751 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GU815531
      3.2% cov
    • Alignment Length
      24 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
7
Length
24
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Plasmodium falciparum 3D7

    Plasmodium falciparum 3D7

    • Public DB hit
      GI:254832581
      AE014186
      1 of 4 hits reported for Plasmodium falciparum 3D7.
    • Hit length
      2,038,337 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AE014186
      0% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Cyclospora cayetanensis

    Cyclospora cayetanensis

    • Public DB hit
      GI:213019962
      AB368543
      1 of 4 hits reported for Cyclospora cayetanensis.
    • Hit length
      598 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AB368543
      4.01% cov
    • Alignment Length
      24 bp
  • Adelina grylli

    Adelina grylli

    • Public DB hit
      GI:197114646
      DQ096836
    • Hit length
      1,780 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      DQ096836
      1.35% cov
    • Alignment Length
      24 bp
  • Adelina bambarooniae

    Adelina bambarooniae

    • Public DB hit
      GI:33321794
      AF494059
      1 of 2 hits reported for Adelina bambarooniae.
    • Hit length
      1,756 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AF494059
      1.37% cov
    • Alignment Length
      24 bp
  • Plasmodium falciparum

    Plasmodium falciparum

    • Public DB hit
      GI:18071127
      AJ426488
      1 of 3 hits reported for Plasmodium falciparum.
    • Hit length
      89 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AJ426488
      26.97% cov
    • Alignment Length
      24 bp
  • Cyclospora sp.

    Cyclospora sp.

    • Public DB hit
      GI:1407588
      U40261
    • Hit length
      1,747 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      U40261
      1.37% cov
    • Alignment Length
      24 bp
  • Theileria parva

    Theileria parva

    • Public DB hit
      GI:335311003
      HQ684067
      1 of 3 hits reported for Theileria parva.
    • Hit length
      1,581 bp
    • E Value
      1.68E-1
    • BLAST Score
      40.1 bits
    • Similarity
      95.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      HQ684067
      1.52% cov
    • Alignment Length
      24 bp
  • Theileria sp. ex Syncerus caffer MCO-2011

    Theileria sp. ex Syncerus caffer MCO-2011

    • Public DB hit
      GI:335311000
      HQ895987
      1 of 2 hits reported for Theileria sp. ex Syncerus caffer MCO-2011.
    • Hit length
      1,583 bp
    • E Value
      1.68E-1
    • BLAST Score
      40.1 bits
    • Similarity
      95.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      HQ895987
      1.52% cov
    • Alignment Length
      24 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
8
Length
23
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Plasmodium falciparum

    Plasmodium falciparum

    • Public DB hit
      GI:315488082
      HQ283222
      1 of 19 hits reported for Plasmodium falciparum.
    • Hit length
      1,132 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      HQ283222
      2.03% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium falciparum 3D7

    Plasmodium falciparum 3D7

    • Public DB hit
      GI:254832581
      AE014186
      1 of 4 hits reported for Plasmodium falciparum 3D7.
    • Hit length
      2,038,337 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AE014186
      0% cov
    • Alignment Length
      23 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
9
Length
41
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
10
Length
45
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Trichia sordida

    Trichia sordida

    • Public DB hit
      GI:146448829
      EF513182
    • Hit length
      1,954 bp
    • E Value
      2.2E-4
    • BLAST Score
      52 bits
    • Similarity
      94.12%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 10
      75.56% cov
      EF513182
      1.74% cov
    • Alignment Length
      34 bp
    • CIGAR string
      16MN6MN10M11H mismatches: 2 - insertions: 0 - deletions: 0
Occurrence
13 times in PatSeqDB
Tools

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