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LysM receptor-like kinases (LysM RLKs) are instrumental in this perception process. LysM RLKs also play a role in activating transcription of chitin-responsive genes (CRGs) in plants. Mutations in the LysM kinase receptor genes or the downstream CRGs may affect the fungal susceptibility of a plant. Mutations in LysM RLKs or transgenes carrying the same may be beneficial in imparting resistance against fungal pathogens.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"}]},"abstract_lang":["en"],"has_abstract":true,"claim":{"en":[{"text":"1. A transgenic plant comprising a transgene, said transgene having at least 98% sequence identity to a LysM receptor kinase family gene having the sequence of SEQ ID No. 7, wherein the transgenic plant is derived from a host plant that is susceptible to fungal infection, and wherein the expression of said transgene renders the transgenic plant less susceptible to fungal infection as compared to said host plant.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"2. The transgenic plant according to claim 1 , wherein the transgene has at least 99% sequence identity to a LysM receptor kinase family gene having the sequence of SEQ ID No. 7.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"3. The transgenic plant according to claim 1 , wherein the transgene has 100% sequence identity to a LysM receptor kinase family gene having the sequence of SEQ ID No. 7.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"4. The transgenic plant according to claim 1 , wherein the plant is soybean.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"5. The transgenic plant according to claim 1 , wherein the plant is Arabidopsis thaliana.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"6. The transgenic plant according to claim 1 wherein the LysM receptor kinase family gene encodes a functional LysM receptor kinase.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"7. The transgenic plant according to claim 1 , further comprising at least one regulatory sequence operably linked to said LysM receptor kinase family gene, said regulatory sequence controlling the expression level of the LysM receptor kinase family gene.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"8. A transgenic plant comprising a LysM receptor kinase family gene having at least one mutation, said mutated gene being derived from an endogenous wild-type LysM receptor kinase family gene having at least 98% sequence identity to SEQ ID No. 7.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"9. The transgenic plant of claim 8 , wherein the mutated LysM receptor kinase family gene encodes a LysM receptor kinase with a mutation selected from the group consisting of amino acid substitution, deletion and insertion.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"10. The transgenic plant of claim 8 , wherein the mutation of the LysM receptor kinase family gene alters the expression level of the encoded LysM receptor kinase in said plant.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"11. A method for protecting a plant from fungal infection, comprising the step of introducing into said plant a transgene, said transgene having at least 95% sequence identity to a LysM receptor kinase family gene having the sequence of SEQ ID No. 7.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"12. The method of claim 11 , further comprising the step of expressing a LysM receptor kinase encoded by said transgene.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"13. The method of claim 11 , wherein the LysM receptor kinase family gene is at least 98% identical to SEQ ID No. 7.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"14. A method for protecting a plant from fungal infection, comprising the step of generating in said plant at least one mutation in a LysM receptor kinase family gene, said LysM receptor kinase family gene being endogenous to said plant, wherein said LysM receptor kinase family gene has at least 95% sequence identity to the polynucleotide having the sequence of SEQ ID No. 7.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"15. The method according to claim 14 wherein the plant is soybean.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"16. The method according to claim 14 wherein the plant is Arabidopsis thaliana.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"}]},"claim_lang":["en"],"has_claim":true,"description":{"en":{"text":"This application is a divisional application of U.S. patent application Ser. No. 11/835,328 filed Aug. 7, 2007, now U.S. Pat. No. 8,097,771 which claims priority to U.S. provisional patent application Ser. No. 60/836,084 filed on Aug. 7, 2006. Both of the aforementioned applications are incorporated herein by reference. GOVERNMENT INTERESTS This work was funded in part by a grant from the United States Department of Energy, Energy Biosciences Program, Office of Basic Energy Sciences (grant number DE-FG02-02ER15309). The United States government may have certain rights in the invention disclosed herein. SEQUENCE LISTING This application is accompanied by a sequence listing that accurately reproduces the sequences described herein. BACKGROUND This disclosure relates to the use of molecular genetic technology involving LysM receptor kinase family genes and the expression or nonexpression thereof to modulate plant defense responses, especially against fungal pathogens. Fungal disease causes significant agricultural losses in the United States and other parts of the world. Control of these pathogens is particularly difficult, often requiring treatment of entire fields with biocidal compounds. Although effective, increasing concern about the environmental and economic costs of such treatments require the need for alternative control methods. Phakopsora pachyrhizi is a fungus that causes a rust disease of soybean ( Glycine max ), also known as Asian Soybean Rust. The pathogen has spread from Asia to all other soybean production regions in the world, and is reported to have arrived in the United States in the fall of 2004. At present, there is no known durable resistance available in any soybean varieties. Uromyces appendiculatus is a fungus that causes rust on bean ( Phaseolus vulgaris ). Breeders are working to identify genes in bean that can be manipulated for rust resistance. United States soybean producers have anticipated the arrival of P. pachyrhizi , the fungus that causes soybean rust, since its reported occurrence in Brazil. The arrival of P. pachyrhizi in the U.S. in late 2004 ended the anticipation, and farmers must now respond to the potential annual occurrence of this new disease. Farmer concerns have been based on reports of losses ranging from 10 to 80% in other regions of the world when control measures were not successfully implemented. As rust-inducing fungi, U. appendiculatus and P. pachyrhizi belong to the order Uredinales, within the class Basidiomycetes. U. appendiculatus produces five spore stages on a single host plant. P. pachyrhizi reproduces predominantly by uredospores on a single host plant. Uredospores are responsible for rapid spread of the fungus. P. pachyrhizi can infect dozens of legume species, in addition to soybean. Uredospores of U. appendiculatus penetrate through foliar stomatal openings. P. pachyrhizi differs in that germinated uredospores penetrate directly through the leaf epidermal cell layer. Typically, a uredospore that lands on a leaf surface germinates to produce an infection pad (appressorium) that adheres to the surface. In both species, the appressorium produces a hyphal peg that penetrates the plant. After penetration, each fungus develops thread-like structures (hyphae) that grow inter-cellularly through leaf tissues. The hyphae enter host cells without killing them. There, they produce spherical structures (haustoria) that extract nutrients from the living leaf cells. Soon after infection each fungus forms uredia that produce additional spores. Soybean producers are particularly concerned because no durable, natural resistance to rust has been discovered after testing more than 18,000 soybean varieties. The pathogen, P. pachyrhizi can potentially infect any cultivar produced. In anticipation of the arrival of the rust pathogen, a great deal of research has been conducted to identify effective fungicides, and emergency governmental clearance for application to soybean has been obtained. Traditional screening and breeding methods have identified no major resistance genes to the aforementioned pathogens, and particularly in the case of U. appendiculatus and P. pachyrhizi. Fungicides will likely be the front-line of defense against these and other fungal pathogens for many years until new resistance genes or other forms of resistance are identified. Fungicides have not traditionally been used in most soybean production. Consequently, there is limited information concerning the costs of this disease management practice and its likely economic viability. Widespread use of fungicides may also raise environmental concerns. These concerns have led to variable estimates of the acreage in Missouri and other states that may be shifted from soybean to alternative crops. To protect soybean farmers and to ensure that soybean production meets increasing market demand, it is imperative that alternatives to fungicides be developed as rapidly as possible. Biotechnology-based approaches for defense against plant diseases are more preferable due to the minimal use of chemicals and the relative ease of deployment. Chitin is a polymer of N-acetyl-D-glucosamine, found in fungal cell walls, insect exoskeletons, and crustacean shells. It has been hypothesized that plant chitinases can degrade chitin in the fungal cell walls to directly affect the viability of the invading fungal pathogen and to release short fragments (chitooligosaccharides) that can act as a general elicitor of plant innate immunity pathways. See e.g., Shibuya et al., 2001 and Stacey et al., 1997. In support of the above hypothesis, purified chitooligosaccharides have been shown to induce various defense responses in plants or cultured cells, such as induction of defense related genes and synthesis of phytoalexin. Shibuya et al., 2001 and Ramonell et al., 2005. More particularly, chitooligosaccharides have been shown to induce a large number of genes (including many defense-related genes), and mutations in selected chitooligosaccharide-responsive genes or chitin-responsive genes (CRGs) have been shown to increase the susceptibility of a plant to certain fungal pathogens. See Ramonell et al., 2002; and Ramonell et al., 2005. Taken together, these studies suggest that plants possess a specific system to recognize chitooligosaccharides which, in turn, activate defense genes. See generally, Day et al., 2001; Zhang et al., 2002; Wan et al., 2004; Kaku et al., 2006; and Libault et al., 2007. Previous work has reported chitin recognition in rice and legumes. Stacey, G. and N. Shibuya, Plant and Soil 194: 161-169 (1997) The ability of Arabidopsis thaliana to recognize and respond to chitin has also been reported. A variety of genes have been shown to respond to chitin treatment. See e.g., Ramonell et al. Microarray analysis of chitin elicitation in Arabidopsis thaliana . Mol. Plant Pathol. 3 (1): 301-311 (2002) and Zhang et al., Characterization of Early, Chitin-Induced Gene Expression in Arabidopsis Mol. Plant-Microbe Int. 15: 963-970 (2002) and Wan et al., Activation of a potential mitogen-activated protein kinase pathway in Arabidopsis by chitin. Mol. Plant Pathol. 5(1): 125-135 (2004). More specifically, chitin binding sites or proteins have been previously identified in membrane preparations of a variety of plant cells. Day et al., 2001; Ito et al., 1997; and Okada et al, 2002. More recently, a LysM domain-containing protein (CEBiP) has been shown to be involved in the binding and recognition of chitooligosaccharides in rice. Kaku et al., 2006. The LysM motif was originally identified in bacterial enzymes that degrade cell wall component peptidoglycan, which is structurally similar to chitin. Joris, 1992. Since CEBiP lacks a significant intracellular domain, it likely functions as part of a chitin receptor complex. Kaku et al., 2006. However, no such chitin receptor complexes have been identified. SUMMARY The present disclosure overcomes the problems outlined above and advances the art by providing methods to confer fungal resistance to plants. This disclosure addresses a new biotechnology-based approach to generate rust resistant soybean and to confer rust resistance upon soybean plants. The technology also involves the development and/or deployment of defense peptides against fungal pathogen, such as the Asian soybean rust fungus. The technology similarly applies to other pathogens in plants, such as the field bean ( Phaseolus vulgaris ) rust pathogen, Uromyces appendiculatus. It is hereby disclosed a number of LysM-containing receptor like kinases (“LysM RLKs”) in soybean, as well as in other legume or non-legume plants. The lysine motif (LysM) domain is an ancient and ubiquitous protein module that binds peptidoglycan and structurally related molecules. A genomic survey in a large number of species spanning all kingdoms reveals that the combination of LysM and receptor kinase domains is present exclusively in plants. Table 1 lists a number of genes encoding LysM containing proteins from both prokaryotes and eukaryotes, along with their accession numbers from GenBank or other databases. 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_1710bUniProt/TrEMBLQ63LR7>BURPS4BacteriaProteobacteriaBeta-proteobacteriaBurkholderia _ pasudomallei _1710bUniProt/TrEMBLQ63TI4>BURPS6aBacteriaProteobacteriaBeta-proteobacteriaBurkholderia _ pasudomallei _1710bUniProt/TrEMBLQ63V96>CHLAU2BacteriaChloroflexiChloroflexus _ aurantiacusUniProt/TrEMBLQ3E5J5>ECOLI6BacteriaProteobacteriaGama-proteobacteriaEscherichia _ coliUniProt/TrEMBLP75954>PELCD5aBacteriaProteobacteriaDelta-proteobacteriaPelobacter _ carbinolicus _DSMUniProt/TrEMBLQ3A2X4>RALSO3BacteriaProteobacteriaBeta-proteobacteriaRalstonia _ solanacearumUniProt/TrEMBLQ8Y0H0>RALSO6BacteriaProteobacteriaBeta-proteobacteriaRalstonia _ solanacearumUniProt/TrEMBLQ8XZ88>RHOPA4BacteriaProteobacteriaAlpha-proteobacteriaRhodopseudomonas _ palustrisUniProt/TrEMBLQ379H8>SALCH2BacteriaProteobacteriaGama-proteobacteriaSalmonella _ choleraesuisUniProt/TrEMBLQ5J4C2>SALCH5BacteriaProteobacteriaGama-proteobacteriaSalmonella _ 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thalianaTAIRAt2g33580>AtLYP1bEukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt1g21880>AtLYP2aEukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt1g77630>AtLYP3aEukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt2g17120>AtLYP3bEukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt2g17120>AtLysMe1EukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt3g52790>AtLysMe2EukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt4g25433>AtLysMe3EukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt5g62150>AtLysMn1EukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt1g55000>AtLysMn2EukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt5g08200>AtLysMn3EukaryotaViridiplantaeStreptophytaArabidopsis _ thalianaTAIRAt5g23130>GmLYK10bEukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2080D08.12>GmLYK10cEukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2080D08.12>GmLYK11EukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2042I24.15>GmLYK2EukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2098N11.15>GmLYK4bEukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2095P01.22>GmLYK4cEukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2095P01.22>GmLYK8aEukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2098N11.2>GmLYK8bEukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2098N11.2>GmLYK9bEukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2069O12.22>GmLYK9cEukaryotaViridiplantaeStreptophytaGlycine _ maxthis studyGmW2069O12.22>GmLYP1bEukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLYP2aEukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLYP2bEukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLYP3aEukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLYP3bEukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLysMe1EukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLysMe2EukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLysMe3EukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLysMe4EukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLysMn1EukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLysMn2EukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmLysMn3EukaryotaViridiplantaeStreptophytaGlycine _ maxTIGR>GmNFR1abEukaryotaViridiplantaeStreptophytaGlycine _ maxthis study>GmNFR1acEukaryotaViridiplantaeStreptophytaGlycine _ maxthis study>GmNFR5aaEukaryotaViridiplantaeStreptophytaGlycine _ maxthis study>GmNFR5abEukaryotaViridiplantaeStreptophytaGlycine _ maxthis study>GmNFR5acEukaryotaViridiplantaeStreptophytaGlycine _ maxthis study>MtLYK10aEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC148994_13truncatulasequencingresources>MtLYK10bEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC148994_13truncatulasequencingresources>MtLYK10cEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC148994_13truncatulasequencingresources>MtLYK12bEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC126779_3truncatulasequencingresources>MtLYK12cEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC126779_3truncatulasequencingresources>MtLYK13aEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC126779_4truncatulasequencingresources>MtLYK13bEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC126779_4truncatulasequencingresources>MtLYK3bEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaGene BankAY372402>MtLYK3cEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaGene BankAY372402>MtLYK9aEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC148241_11truncatulasequencingresources>MtLYK9bEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC148241_11truncatulasequencingresources>MtLYK9cEukaryotaViridiplantaeStreptophytaMedicago _ truncatulaMedicagoAC148241_11truncatulasequencingresources>OsLYK2bEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os06g41980>OsLYK2cEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os06g41980>OsLYK3EukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os06g41960>OsLYK4bEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os02g09960>OsLYK4cEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os02g09960>OsLYK5aEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os03g13080>OsLYK5cEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os03g13080>OsLYK6aEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os11g35330>OsLYK6bEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os11g35330>OsLYK6cEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os11g35330>OsLYP1bEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os03g04110>OsLYP2aEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os09g37600>OsLYP2bEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os09g37600>OsLYP3aEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os06g10660>OsLYP3bEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os06g10660>OsLYP5bEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os02g53000>OsLYP6aEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os11g34570>OsLYP6bEukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os11g34570>OsLysMe1EukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os01g57390>osLysMe2EukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os01g57400>OsLysMe3EukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os04g48380>OsLysMn1EukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os03g49250>OsLysMn2EukaryotaViridiplantaeStreptophytaOryza _ sativaTIGRLOC_Os06g51360>PtLysMe4EukaryotaViridiplantaeStreptophytaPopulus _ trichocarpaDOE JGIEUGENE3.00051310>PtLysMe8EukaryotaViridiplantaeStreptophytaPopulus _ trichocarpaDOE JGIEUGENE3.00070396>PtLysMe9EukaryotaViridiplantaeStreptophytaPopulus _ trichocarpaDOE JGIEUGENE3.00110096>PtLysMe11EukaryotaViridiplantaeStreptophytaPopulus _ trichocarpaDOE JGIEUGENE3.00070285 In comparison to the LysM proteins in other kingdoms, plant LYK proteins possess unique features: (1) the combination of LysM and kinase domains exists exclusively in the plant lineage; (2) plant LYK proteins have no more than three LysM motifs; (3) if more than two LysM motifs exist within a single plant LYK protein, they are always distinct from each other at the protein sequence level; and (4) the LysM domain sequences in plant LYK proteins are highly diversified due to different combinations of heterogenous LysM motifs. Based on the sequence phylogenies, LysM motifs (named LYKa, LYKb, and LYKc from the N to the C terminus) in plant LYK proteins largely fall into five clades ( FIG. 1A ). This distribution of LysM motifs was found in all six plant species studied (i.e. LysM motifs from dicots and rice are clustered together in each clade, suggesting that the diversification event of plant LysM motifs predated the divergence of monocot and dicot plants). The LysM motifs from non-kinase plant LysM proteins have also been investigated. These sequences have been retrieved using BLAST searches against genomic sequence databases of Arabidopsis , rice, and poplar and EST sequences of soybean. Based on their subcellular localization predictions and domain arrangements, non-kinase plant LysM proteins may be further categorized into three subgroups, including LysM-type receptor-like proteins (LYPs), extracellular LysM proteins (LysMe), and nonsecretory intracellular LysM proteins (LysMn; FIG. 1B ). This grouping will be helpful in understanding the nature of each LysM protein and providing insightful clues to the biological functions. FIG. 1B illustrates the general domain structure of different LysM containing proteins. As shown in FIG. 1B , LysM RLKs (also referred to as “LYK”) typically possess one or more LysM domains, a transmembrane domain and a kinase domain. The LysM domain is known for its capability to bind chitin. The transmembrane domain may serve to anchor the LysM RLKs in the membrane of the cells, whereas the kinase domain extends into the cytoplasm where it may phosphorylate specific substrates in the cell. In one embodiment, it is conceivable that the transmembrane domain of an LYK may be replaced with a different transmembrane domain from another LYK, or from another transmembrane protein, As shown in FIG. 1 and FIG. 2 , LysM domains in plants are highly diversified and that at least six distinct types of LysM motifs exist in plant LysM kinase proteins, which are shown as Types I-V and VII in FIG. 1B . Five additional types of LysM motifs exist in non-kinase plant LysM proteins, designated as Types VI, VIII-XI as shown in FIG. 1B . See also Zhang et al., Plant Physiol. 144, 623-636 (2007), which is hereby expressly incorporated by reference. FIG. 2 shows sequence alignment of representative LysM domains. FIG. 2A shows an alignment of 93 LysM-containing proteins in plants. Shaded areas indicate conserved residues in FIG. 2 . FIG. 2B is an alignment of LysM domains from the LYK Group I, which contains LysM motif Types II and IV. FIG. 2C is an alignment of LysM domains from the LYK Group II, which contains LysM motif Types I, II and V. FIG. 2D is an alignment of LysM domains from the LYK Group III, which contains LysM motif Type VII. FIG. 2E is an alignment of LysM domains from the LYP group, which typically contains LysM motif Types VI and VII, or VI and VIII. See also FIG. 1B . FIG. 2F is an alignment of LysM domains from the LysMe group, which typically contains LysM motif Types IX or X. FIG. 2G is an alignment of LysM domains from the LysMn group, which typically contains LysM motif Type XI. As predicted by Pfam, LYP proteins have exactly two LysM motifs and LysMe and LysMn proteins have only one LysM motif. Sequence alignments show that, among the 11 types of LysM motifs, motif sequences of LysMn (the motif within LysMn proteins, LysM motif type XI), one group of LysMe (the motif within LysMe proteins, LysM motif type X), and one group of LYPb (the second motif from the N terminus within LYP proteins, LysM motif VII) are extremely conserved. In these motifs, the amino acid identities averaged across the alignments are 91% for LysMe (type X), 86% for LysMn (type XI), and 75% for LYP (type VII). LysMn motif sequences always start with a His and end with a Pro. Similarly, LYPb motif sequences always end with a Pro. LYKa motifs are seven to 10 residues shorter. In one aspect of this disclosure, soybean plants may be made resistant to soybean rust where no durable resistance is currently available. Certain soybean strains may be susceptible to rust diseases because they lack a functional signaling pathway that can perceive the existence of chitin or pass such a signal into the plant cell. Other strains may lack certain functional chitin responsive proteins and thus are not capable of mounting successful defenses against the invaders. It is hereby disclosed a methodology whereby a transgene encoding a component of the chitin signaling pathway may be introduced into a plant, such as a soybean plant. Expression of the transgene may enhance the perception of chitin by the transgenic plant, augment subsequent signaling that leads to gene activation inside the cells, and/or increase the capability of effector proteins in fighting the fungal pathogens. In another aspect, mutations may be identified, induced or introduced into a plant, such as soybean, in order to obtain a mutant plant that have enhanced chitin perception or response. Certain mutations in LysM RLKs may enhance recognition of chitin by plant cells, whereas some other mutations in LysM RLKs may abolish chitin recognition. Similar situations may apply to other protein involved in fungal defense, including but not limited to the CRGs. The polynucleotide sequences disclosed herein may aid identification, mapping and/or genetic analysis of such mutants. In one embodiment, a transgenic plant may be prepared by identifying in a plant one or more genes that contain a LysM receptor kinase family gene with a level of expression that is regulated by treatment of the plant with chitin. Such a plant may then be transformed with one or more LysM receptor kinase genes. The resulting transgenic plant may be challenged with chitin, its derivatives, or a pathogen to confirm an enhanced plant defense response, if desired. The same general techniques disclosed herein may be employed in plants other than soybean to help create strains that are resistant to fungal infection. Different plants may be used to effect the transformation, such as soybean, Arabidopsis thaliana , or others. For instance, genes identified in one species may be introduced into another species in order to obtain transgenic plants that have enhanced fungal defense. In another embodiment, a gene which belongs to the LysM receptor kinase family may be knocked out. Alternatively, a LysM receptor kinase family gene may be overexpressed. The resultant mutant plants may exhibit improved plant defense responses when challenged with chitin or its derivatives, for example, by spraying the leaves with chitin, or when challenged with a chitin-expressing organism. In another embodiment, the LysM receptor kinase family gene may be any genes having a coding sequence that has 70%, 80%, 90%, 95%, 99%, or 100% sequence identity to any one of the polynucleotides of SEQ ID Nos. 1-7 and 54-95. In another embodiment, the LysM receptor kinase family gene may be any genes having a coding sequence that has 70%, 80%, 90%, 95%, 99%, or 100% sequence identity to the polynucleotides of SEQ ID No. 6 (AtLyk4). BRIEF DESCRIPTION OF THE DRAWINGS FIG. 1 illustrates the eleven distinct types of LysM motifs in plants. (A) The evolutionary relationships of plant LysM motifs. (B) Subcellular localization and LysM domain structures of LysM proteins in plants. FIG. 2 shows a sequence comparison of various plant LysM sequences that were obtained by computerized searching. FIG. 2A shows an alignment of 93 LysM-containing proteins: MtLYK10 (SEQ ID No. 75), MtLYK11 (SEQ ID No. 76), MtLysMe2 (SEQ ID No. 150; HtLYK1 (SEQ ID No. 71); MtLysHe1 (SEQ ID No. 151); AtLYK1 (SEQ ID No. 3); GmLYK2 (SEQ ID No. J6); HtLYK3 (SEQ ID No. 72); HtLYK4 (SEQ ID No. 73); HtLYK2 (SEQ ID No. 152); LjNFR1a (SEQ ID No. 1); PtLysHn8 (SEQ ID No. 153); PtLYK1 (SEQ ID No. 85); GmLYK8 (SEQ ID No. 63); PtLYK3 (SEQ ID No. 87); AtLYK5 (SEQ ID No. 5); GmLYK6 (SEQ ID No. 61); GmLYK4 (SEQ ID No. 58); HtLYK12 (SEQ ID No. 77); PtLYK6 (SEQ ID No. 90); PtLYK9 (SEQ ID No. 93); AtLYK4 (SEQ ID No. 6); OsLYK1 (SEQ ID No. 79); PtLYK5 (SEQ ID No. 89); GnLYK10 (SEQ ID No. 65); PtLYK7 (SEQ ID No. 91); AtLYK2 (SEQ ID No. 4); OsLYK2 (SEQ ID No. 80); PtLYP1 (SEQ ID No. 154); PtLYK4 (SEQ ID No. 88); PtLYK10 (SEQ ID No. 94); GmLYK9 (SEQ ID No. 64); GnNFR5a (SEQ ID No. 59); LjNFR5 (SEQ ID No. 2); PsSYH10 (SEQ ID No. 155); HtLYK13 (SEQ ID No. 78); HtLYK9 (SEQ ID No. 74); PtLYK2 (SEQ ID No. 86); OsLYK3 (SEQ ID No. 81); AtLYK3 (SEQ ID No. 5); PtLYK8 (SEQ ID No. 92); GnLYK11 (SEQ ID No. 66); PtLYP2 (SEQ ID No. 156); PtLYP3 (SEQ ID No. 157); PtLYP6 (SEQ ID No. 158); AtLYP3 (SEQ ID No. 159); GmLYP1 (SEQ ID No. 160); OsLYP1 (SEQ ID No. 161); PtLYP7 (SEQ ID No. 162); PtLYP5 (SEQ ID No. 163); PtLYP4 (SEQ ID No. 164); GmLYP4 (SEQ ID No. 165); GmLYP2 (SEQ ID No. 166); AtLYP2 (SEQ ID No. 167); AtLYP2 (SEQ ID No. 168); GmLYP3 (SEQ ID No. 169); GmLysHe1 (SEQ ID No. 170); MtLysH16 (171); PtLysHe7 (SEQ ID No. 172); GmLysHe2 (SEQ ID No. 173); GmLysHe4 (SEQ ID No. 174); PtLysHe6 (SEQ ID No. 175); GmLysHe3 (SEQ ID No. 176); GmLysHe6 (SEQ ID No. 177); GmLysHe5 (SEQ ID No. 178); PtLysHe3 (SEQ ID No. 179); PtLysHe5 (SEQ ID No. 180); PtLysMe10 (SEQ ID No. 181); AtLysHe3 (SEQ ID No. 182); OsLysHe4 (SEQ ID No. 183); AtLysHe2 (SEQ ID No. 184); AtLysHe1 (SEQ ID No. 185); PtLysHn9 (SEQ ID No. 186); PtLysHn7 (SEQ ID No. 187); PtLysHe8 (SEQ ID No. 188); PtLysMe11 (SEQ ID No. 189); PtLysHe4 (SEQ ID No. 190); GmLysHn2 (SEQ ID No. 191); GmLysHn4 (SEQ ID No. 192); PtLysHn6 (SEQ ID No. 193); OsLysHn3 (SEQ ID No. 194); GmLysHn3 (SEQ ID No. 195); GmLysHn5 (SEQ ID No. 196); AtLysHn2 (SEQ ID No. 197); PtLysMn11 (SEQ ID No. 198); AtLysHn3 (SEQ ID No. 199); GmLysHn1 (SEQ ID No. 200); AtLysHn1 (SEQ ID No. 201); PtLysHn2 (SEQ ID No. 202); PtLysHn1 (SEQ ID No. 203); OsLysHn1 (SEQ ID No. 204); PtLysMn10 (SEQ ID No. 205); and PtLysHe9 (SEQ ID No. 206). FIG. 2B is an alignment of LysM domains from the following proteins: MtLYK3 (SEQ ID No. 72), MtLYK4 (SEQ ID No. 73), MtLYK2 (SEQ ID No. 152), GmNFR1a (SEQ ID No. 54; GmNFR1b (SEQ ID No. 55); LjNFR1a (SEQ ID No. 1); MtLYK1 (SEQ ID No. 71); AtLYK1 (SEQ ID No. 3); GmLYK3 (SEQ ID No. 57); MtLYK3 (SEQ ID No. 72); MtLYK4 (SEQ ID No. 73); MtLYK2 (SEQ ID No. 152); GmNFR1a (SEQ ID No. 54); GmNFR1b (SEQ ID No. 55); LjNFR1a (SEQ ID No. 1); MtLYK1 (SEQ ID No. 71); AtLYK1 (SEQ ID No. 3); and GmLYK3 (SEQ ID No. 57). FIG. 2C is an alignment of LysM domains from GmNFR5a (SEQ ID No. 59); LjNFR5 (SEQ ID No. 2); MtLYK9 (SEQ ID No. 74); PtLYK2 (SEQ ID No. 86); GmLYK10 (SEQ ID No. 65); PtLYK7 (SEQ ID No. 91); AtLYK5 (SEQ ID No. 7); GmLYK8 (SEQ ID No. 63); MtLYK10 (SEQ ID No. 75); MtLYK11 (SEQ ID No. 76); LjLYK4 (SEQ ID No. 69); MtLYK12 (SEQ ID No. 77); GmLYK4 (SEQ ID No. 58); PtLYK6 (SEQ ID No. 90); PtLYK9 (SEQ ID No. 93); AtLYK4 (SEQ ID No. 6); PtLYK10 (SEQ ID No. 94); PtLYK4 (SEQ ID No. 88); GmLYK9 (SEQ ID No. 62); MtLYK13 (SEQ ID No. 78); PsSYM10 (SEQ ID No. 155); PtLYK11 (SEQ ID No. 95); GmNFR5b (SEQ ID No. 60); GmNFR5a (SEQ ID No. 59); LjNFR5 (SEQ ID No. 2); MtLYK9 (SEQ ID No. 74); PtLYK2 (SEQ ID No. 86); GmLYK10 (SEQ ID No. 65); PtLYK7 (SEQ ID No. 91); AtLYK5 (SEQ ID No. 7); GmLYK8 (SEQ ID No. 63); MtLYK10 (SEQ ID No. 75); MtLYK11 (SEQ ID No. 76); LyLYK4 (SEQ ID No. 69); MtLYK12 (SEQ ID No. 77); GmLYK4 (SEQ ID No. 58); PtLYK6 (SEQ ID No. 90); PtLYK9 (SEQ ID No. 93); AtLYK4 (SEQ ID No. 6); PtLYK10 (SEQ ID No. 94); PtLYK4 (SEQ ID No. 88); GmLYK9 (SEQ ID No. 64); MtLYK13 (SEQ ID No. 78); PsSYM10 (SEQ ID No. 155); PtLYK11 (SEQ ID No. 95); and GmNFR5b (SEQ ID No. 60). FIG. 2D is an alignment of LysM domains from GmLYK6 (SEQ ID No. 61); PtLYK3 (SEQ ID No. 87); OsLYK1 (SEQ ID No. 79); PtLYK5 (SEQ ID No. 89); AtLYK2 (SEQ ID No. 4); GmLKY11 (SEQ ID No. 66); PtLYK8 (SEQ ID No. 92); AtLYK3 (SEQ ID No. 5); OsLYK2 (SEQ ID No. 80); PtLYK1 (SEQ ID No. 85); OsLYK3 (SEQ ID No. 81). FIG. 2E is an alignment of LysM domains from AtLyP1 (SEQ ID No. 167); AtLYP2 (SEQ ID No. 168); PtLYP5 (SEQ ID No. 163); PtLYP7 (SEQ ID No. 162); PtLYP4 (SEQ ID No. 164); GmLYP4 (SEQ ID No. 165); GmLYP2 (SEQ ID No. 166); OsLYP3 (SEQ ID No. 207); OsLYP5 (SEQ ID No. 208); OsLYP4 (SEQ ID No. 209); GmLYP3 (SEQ ID No. 169); OsLYP1 (SEQ ID No. 161); OsLYP6 (SEQ ID No. 210); OsLYP2 (SEQ ID No. 211); PtLYP2 (SEQ ID No. 156); PtLYP3 (SEQ ID No. 157); AtLYP3 (SEQ ID No. 159); GmLYP1 (SEQ ID No. 160; PtLYP6 (SEQ ID No. 158); and PtLYP1 (SEQ ID No. 154). FIG. 2F is an alignment of LysM domains from GMLYSMe1 (SEQ ID No. 170); PtLysMe7 (SEQ ID No. 172); AtLysMe1 (SEQ ID No. 185); AtLysMe3 (SEQ ID No. 182); GmLysMe4 (SEQ ID No. 174); GmLysMe2 (SEQ ID No. 173); GmLysMe3 (SEQ ID No. 176); GmLysMe5 (SEQ ID No. 178); GmLysMe6 (SEQ ID No. 177); PtLysMe6 (SEQ ID No. 175); PtLysMe3 (SEQ ID No. 179); PtLysMe5 (SEQ ID No. 180); PtLysMe10 (SEQ ID No. 181); OsLysMe4 (SEQ ID No. 183); AtLysMe2 (SEQ ID No. 184); PtLysMe11 (SEQ ID No. 189); PtLysMe8 (SEQ ID No. 188); PtLysMe4 (SEQ ID No. 190); OsLysMe2 (SEQ ID No. 212); OsLysMe1 (SEQ ID No. 213); PtLysMe9 (SEQ ID No. 206); OsLysMe3 (SEQ ID No. 214). FIG. 2G is an alignment of LysM domains from AtLYSMn1 (SEQ ID No. 201); AtLysMn1 (SEQ ID No. 201); GmLysMn1 (SEQ ID No. 200); PtLysMn2 (SEQ ID No. 202); PtLysMn1 (SEQ ID No. 203); OsLysMn1 (SEQ ID No. 204); GmLysMn2 (SEQ ID No. 191); GmLysMn4 (SEQ ID No. 192); PtLysMn6 (SEQ ID No. 193); OsLysMn3 (SEQ ID No. 194); GmLysMn3 (SEQ ID No. 195); GmLysMn5 (SEQ ID No. 196); AtLysMn2 (SEQ ID No. 197); PtLysMn11 (SEQ ID No. 198); AtLysMn3 (SEQ ID No. 199); OsLysMn2 (SEQ ID No. 215); PtLysMn10 (SEQ ID No. 205); PtLysMn7 (SEQ ID No. 187); PtLysMn9 (SEQ ID No. 186); and PtLysMn8 (SEQ ID No. 153). FIG. 3 presents experimental results showing enhanced expression of the defense genes PR1 and PR-2 in the LysM receptor kinase mutant L3. FIG. 4A shows an improved defense response of the L3 mutant to infection by the necotrophic fungus Botrytis cinerea. FIG. 4B shows an improved defense response of the L3 mutant to infection by Pseudomonas syringae. FIG. 5 shows a model of the involvement of the LysM receptor kinases in plant defense. FIG. 6 shows that the knockout of the AtLysM RLK1 gene blocks the induction of the selected chitooligosaccharide-responsive genes (CRGs). FIG. 7 shows disruption of the AtLysM RLK1 gene expression by the T-DNA insertions. WT=Wild-type Col-0; Mu=AtLysM RLK1 mutant. Actin-2 was used as an internal control. FIG. 8 shows restoration of CRGs in the AtLysM RLK1 mutant by the ectopic expression of the AtLysM RLK1 gene. Actin-2 serves as an internal control. FIG. 9 shows the tissue expression pattern of the AtLysM RLK1 gene. Actin-2 serves as an internal control. FIG. 10 shows that AtLysM RLK1 is induced by chitooligosaccharides, but not by the flagellin-derived flg22 peptide. FIG. 11 shows that the T-DNA insertions in the AtLysM RLK1 gene block the induction of virtually all CRGs. FIG. 12 shows the functional categorization by annotations of 909 CRGs-GO Biological Process. FIG. 13 shows that the AtLysM RLK1 mutant is more susceptible to fungal pathogens than wild-type plants and that exogenously applied chitooligosaccharides enhances resistance in the wild-type plants, but not in the mutant. FIG. 14 shows that the selected CRGs are still induced in the AtLysM RLK1 mutant by a fungal pathogen, but to a reduced level. FIG. 15 shows that mutations in the legume Nod signal receptor genes NFR1 and NFR5 do not affect the induction of the selected CRGs in Lotus japonicus. FIG. 16 shows that the mutation in the AtLysM RLK1 gene does not affect other defense-related pathways. FIG. 17 shows that the AtLysM RLK1 mutation does not block the induction of flagellin-responsive genes. FIG. 18 shows similarity between the LysM receptor kinase-like genes in a variety of plants. FIG. 19 shows the expression analysis of GmLysM receptor-like kinases in response to white-mold pathogen. FIG. 20 shows the expression analysis of GmLysM receptor-like kinases in chitin-treated leaves. FIG. 21 shows the results of tissue-specific expression analysis of LysM receptor-like kinases in soybean, M. truncatula , and rice. DETAILED DESCRIPTION The following detailed description is provided to aid those skilled in the art in practicing the present instrumentalities. Even so, this detailed description should not be construed to unduly limit the present invention as modifications and variations in the embodiments discussed herein can be made by those of ordinary skill in the art without departing from the spirit or scope of the present inventive discovery. LysM domain-containing receptor-like kinases (“LysM RLKs,” “LYK” or “LysM receptor kinase family proteins”), such as NFR1 and NFR5 in legumes, have been shown to be critical for the perception of modified chitooligosaccharides—Nod signals—in the legume-rhizobial symbiotic nodulation process. See Limpens et al., 2003; Madsen et al., 2003; and Radutoiu et al., 2003. Similar LysM receptor kinase family genes (or LysM RLK genes) are also present in non-leguminous plants. Zhang et al., 2007. For example, five LysM RLK genes have been identified in the model plant Arabidopsis thaliana . LysM domain-containing proteins are also found in animals but LysM RLKs appear to be unique to plants. Zhang et al., 2007. For purpose of this disclosure, a “LysM receptor kinase family gene” (LysM RLK gene) is any gene that encodes a protein with at least a Lysine motif (LysM) domain, a kinase domain and a transmembrane domain between the LysM and the kinase domain as shown in FIG. 1 . In one aspect, the kinase domain is a serine/threonine kinase domain. A gene may be shown to belong to different subfamilies of LysM genes by sequence comparison with a known LysM gene, as exemplified by the sequence alignment of different LysM containing proteins in FIG. 2 . This classification may be decided by a predetermined level of sequence identity in one or more functional domains of a known LysM receptor kinase, such as 70%, 80%, 90%, 95%, 96%, 97%, 98% 99% or 100% sequence identity with respect to a functional domain or an entire coding sequence. Two sequences may be said to have “substantial sequence similarity” when they have a degree of sequence identity that persons of ordinary skill in the art may expect them to provide similar functionality; or in some cases, a person of skills in the art may expect individual domains within the sequences to possess similar functionality due to the sequence similarity. As measured by computer algorithms that are designed to quantitate sequence identity or similarity, this may be at least 70% identity, or more preferably, this may be any value from 90% and up, such as 95%, 96%, 97%, 98% or 99% identity, with 100% identity being an exact match. When two sequences are of different length, the sequence identity refers to cumulative sequence identity between those segments of both sequences that when aligned generate the best possible matches of individual residues throughout the full length of the sequences. In general, higher sequence similarity between two sequences indicates that the two sequences are more likely to perform similar, if not identical function. The term CRGs (or CRG) refers to genes that may be activated upon perception of chitin or its derivatives by plant cells. Examples of CRGs may include MPK3, WRKY22, WRKY29, WRKY33, WRKY53 and any other genes whose expression levels may be up- or down-regulated when the cells are exposed to chitin or its derivatives. In one embodiment, genetic engineering may be used to render certain CRGs constitutively expressed, or, more preferably, expression of CRGs may be placed under control of certain regulatory elements such that CRG proteins may be expressed before fungi have been detected by the plant. Under certain circumstances, it may be desirable to generate mutations in the coding sequence of certain genes, such as the LYK genes or CRGs. One of skills in the art may recognize that certain sequence variations may not significantly affect the functionality of a DNA or RNA molecule, or a protein. For instance, one may align and compare the sequences of the LYK family genes, as shown in FIG. 2 , to determine which residues may be less conservative than others. The term “conservative” is used to depict those nucleotide or amino acid residues that have not undergone significant changes over the course of evolution. The conservative residues are typically shown as matching residues in a multi-sequence alignment. Guided by such an alignment, one may substitute those residues that are less conservative without compromising the functionality of the genes, RNAs, or proteins. Such manipulations of polynucleotide or polypeptide molecules are within the scope of this disclosure. A “functional” LysM receptor kinase refers to a protein encoded by one of the LysM receptor kinase family genes that is capable of performing the full function that is typically performed by other LysM receptor kinase family proteins. “Secretion sequence” means a sequence that directs newly synthesized secretory or membrane proteins to and through membranes of the endoplasmic reticulum, or from the cytoplasm to the periplasm across the inner membrane of bacteria, or from the matrix of mitochondria into the inner space, or from the stroma of chloroplasts into the thylakoid. Fusion of such a sequence to a gene that is to be expressed in a heterologous host ensures secretion of the recombinant protein from the host cell. A “recombinant polynucleotide” means a polynucleotide that is free of one or both of the nucleotide sequences which flank the polynucleotide in the naturally-occurring genome of the organism from which the polynucleotide is derived. The term includes, for example, a polynucleotide or fragment thereof that is incorporated into a vector or expression cassette; into an autonomously replicating plasmid or virus; into the genomic DNA of a prokaryote or eukaryote; or that exists as a separate molecule independent of other polynucleotides. It also includes a recombinant polynucleotide that is part of a hybrid polynucleotide, for example, one encoding a polypeptide sequence. “PCR” means polymerase chain reaction. As used herein “polynucleotide” and “oligonucleotide” are used interchangeably and refer to a polymeric (2 or more monomers) form of nucleotides of any length, either ribonucleotides or deoxyribonucleotides. Although nucleotides are usually joined by phosphodiester linkages, the term also includes polymeric nucleotides containing neutral amide backbone linkages composed of aminoethyl glycine units. This term refers only to the primary structure of the molecule. Thus, this term includes double- and single-stranded DNA and RNA. It also includes known types of modifications, for example, labels, methylation, “caps”, substitution of one or more of the naturally occurring nucleotides with an analog, internucleotide modifications such as, for example, those with uncharged linkages (e.g., methyl phosphonates, phosphotriesters, phosphoamidates, carbamates, etc.), those containing pendant moieties, such as, for example, proteins (including for e.g., nucleases, toxins, antibodies, signal peptides, poly-L-lysine, etc.), those with intercalators (e.g., acridine, psoralen, etc.), those containing chelators (e.g., metals, radioactive metals, boron, oxidative metals, etc.), those containing alkylators, those with modified linkages (e.g., alpha anomeric nucleic acids, etc.), as well as unmodified forms of the polynucleotide. Polynucleotides include both sense and antisense strands. “Sequence” means the linear order in which monomers occur in a polymer, for example, the order of amino acids in a polypeptide or the order of nucleotides in a polynucleotide. “Peptide,” “Protein” and “Polypeptide” are used interchangeably and mean a compound that consists of two or more amino acids that are linked by means of peptide bonds. “Recombinant protein” means that the protein, whether comprising a native or mutant primary amino acid sequence, is obtained by expression of a gene carried by a recombinant DNA molecule in a cell other than the cell in which that gene and/or protein is naturally found. In other words, the gene is heterologous to the host in which it is expressed. It should be noted that any alteration of a gene, including the addition of a polynucleotide encoding an affinity purification moiety, makes that gene unnatural for the purposes of this definition, and thus that gene cannot be “naturally” found in any cell. A “non-immunoglobulin peptide” means a peptide which is not an immunoglobulin, a recognized region of an immunoglobulin, or contains a region of an immunoglobulin. For example, a single chain variable region of an immunoglobulin would be excluded from this definition. “Substantially pure” or “substantially purified” means that the substance is free from other contaminating proteins, nucleic acids, and other biologicals derived from the original source organism. Purity may be assayed by standard methods, and will ordinarily be at least about 40% pure, more ordinarily at least about 50% pure, generally at least about 60% pure, more generally at least about 70% pure, often at least about 75% pure, more often at least about 80% pure, typically at least about 85% pure, more typically at least about 90% pure, preferably at least about 95% pure, more preferably at least about 98% pure, and in even more preferred embodiments, at least 99% pure. The analysis may be weight or molar percentages, evaluated, e.g., by gel staining, spectrophotometry, or terminus labeling etc. A “transgene” refers to a coding sequence that has been introduced into a host organism, which may be referred to as a transgenic organism, e.g., a transgenic animal, or a transgenic plant, when the transgene has been successfully introduced into said organism. Typically, a transgene is introduced into a host organism so that the coding sequence may be transcribed into RNA or, in most cases, be further expressed as a polypeptide. The introduction of a transgene into a host organism and subsequent expression of the transgene is generally known as a transgenic process. A transgenic plant may refer to a whole plant, or a tissue of a plant, such as a seed, that contains a transgene and has a potential to be grow into a plant. A “mutation,” as used herein, means a change in the nucleotide sequence of a polynucleotide molecule or a change in the amino acid sequence of a polypeptide. The molecule carrying such a change may be referred to as a mutant molecule, and the change is typically measured by comparing the sequence of the mutant molecule with that of the polynucleotide or polypeptide molecule from which the mutant molecule is derived. An organism with a mutation in one of its endogenous genes may be called a mutant. A mutation in a gene may occur on either the coding region or the non-coding region of the gene. A mutated copy of a gene may be said to be “derived” from a endogenous copy of the same gene when one or more spontaneous or induced mutations occur on an endogenous gene, at which point the endogenous gene becomes a mutated gene because it is no longer the same as the original wild-type gene. The resultant organism may be called a mutant. In one aspect, the polynucleotide sequences disclosed herein, including but not limited to LysM receptor kinase family genes and various CRGs, may be used to identify those mutants with mutations in one of the LysM receptor kinase family genes. For instance, a large number of mutants may be generated by either spontaneous or induced mutation. These mutants may be screened to identify those mutations that occur in one of the LysM receptor kinase family genes. Suitable methods for such a screening may include, for example, PCR, sequencing, or hybridization. In another aspect, these polynucleotide sequences, including but not limited to LysM receptor kinase family genes and various CRGs, may also be used to design DNA construct for targeted insertion, deletion, or substitution of a specific LysM receptor kinase family gene. For instance, a DNA fragment may be first inserted into the coding region of a LysM receptor kinase family gene, the construct thus obtained may then be introduced into a host to create an insertional mutant by homologous recombination. The traits of a plant may be modified. A modified plant may be coconsidered “fungal resistant” if the chance of a plant becoming infected by a specific fungal pathogen is at least 30% less than that of a wild-type plant from which the modified plant is derived. A molecule is “endogenous” to an organism if the molecule exists or is encoded by a molecule that exists in the organism without requiring a transgenic process. For purpose of this disclosure, the terms “expression” and “express” refer to transcription of DNA into RNA, or translation of RNA into protein, or both. Besides null mutation that renders a protein completely non-functional, a mutation may also render a protein dominant negative when it only abolishes partial function of a protein. The resultant partially functioning protein may act as a “dominant negative” protein when it continues to perform the remaining function. For example, a mutated protein may continue to bind a co-factor without activating that co-factor because the activation function has been lost. When such a mutated protein is expressed in a cell, it binds to many co-factors without activating them, thus rendering them unavailable for the wild-type protein. In this situation, the mutant protein is said to be acting in a dominant negative fashion. The term “knocking out” or “knock out” means rendering a gene non-functional. “Knocking down” means lowering the expression levels of a gene or decrease the relative activity of the encoded protein. A gene can be knocked out or knocked down through deletion, insertion, substitution of a fragment or a residue in the coding region or in the regulatory regions of a gene. Within the scope of the disclosed instrumentalities are recombinant oligonucleotides encoding peptides having antifungal activity. These recombinant oligonucleotides can be used to produce recombinant polynucleotides which are commonly used as cloning or expression vectors although other uses are possible. A cloning vector is a self-replicating DNA molecule that serves to transfer a DNA segment into a host cell. The three most common types of cloning vectors are bacterial plasmids, phages, and other viruses. An expression vector is a cloning vector designed so that a coding sequence inserted at a particular site will be transcribed and translated into a protein. Both cloning and expression vectors may contain nucleotide sequences that allow the vectors to replicate in one or more suitable host cells. In cloning vectors, this sequence is generally one that enables the vector to replicate independently of the host cell chromosomes, and also includes either origins of replication or autonomously replicating sequences. Various bacterial and viral origins of replication are well known to those skilled in the art and include, but are not limited to the pBR322 plasmid origin, the 2μ plasmid origin, and the SV40, polyoma, adenovirus, VSV and BPV viral origins. An expression vector may contain an origin of replication so that it can be replicated independently from the host's chromosome. More preferably, an expression vector carrying the transgene of interest may have a means by which the DNA fragment containing the transgene may be integrated onto a chromosome of the host plant and thus may be replicated along with the host chromosomes. The polynucleotide sequences of the present disclosure may be used to produce antifungal peptides by the use of recombinant expression vectors containing the polynucleotide sequence disclosed herein. For purpose of this disclosure, antifungal peptides may mean polypeptides or fragments thereof that may help prevent fungal infection of a plant. Examples of antifungal peptides may include but not limited to polypeptides encoded by the LysM receptor kinase genes or the CRGs. In one embodiment, these antifungal peptide may be expressed in vitro and be applied onto a plant or be injected into a plant to achieve the desired antifungal effects. Suitable expression vectors include chromosomal, non-chromosomal and synthetic DNA sequences, for example, SV 40 derivatives; bacterial plasmids; phage DNA; baculovirus; yeast plasmids; vectors derived from combinations of plasmids and phage DNA; and viral DNA such as vaccinia, adenovirus, fowl pox virus, and pseudorabies. In addition, any other vector that is replicable and viable in the host may be used. Suitable host for in vitro expression may include bacterial, yeast, plant or insect cells, among others. The nucleotide sequence of interest may be inserted into the vector by a variety of methods. In the most common method the sequence is inserted into an appropriate restriction endonuclease site(s) using procedures commonly known to those skilled in the art and detailed in, for example, Sambrook et al., Molecular Cloning, A Laboratory Manual, 2nd ed., Cold Spring Harbor Press, (1989) and Ausubel et al., Short Protocols in Molecular Biology, 2nd ed., John Wiley & Sons (1992). In an expression vector, the sequence of interest may be operably linked to a suitable regulatory elements, including but not limited to a promoter or a enhancer, that may be recognized by the host cell to direct mRNA synthesis. Promoters generally refer to untranslated sequences located upstream from the start codon of a structural gene that regulate the transcription and translation of nucleic acid sequences under their control. Promoters may be classified as either inducible or constitutive promoters. Inducible promoters are promoters that initiate increased levels of transcription from DNA under their control in response to some change in the environment, e.g. the presence or absence of a nutrient or a change in temperature. Constitutive promoters, in contrast, maintain a relatively constant level of transcription. A nucleic acid sequence is operably linked when it is placed into a functional relationship with another nucleic acid sequence. For example, DNA for a presequence or secretory leader is operatively linked to DNA for a polypeptide if it is expressed as a preprotein which participates in the secretion of the polypeptide; a promoter is operably linked to a coding sequence if it affects the transcription of the sequence; or a ribosome binding site is operably linked to a coding sequence if it is positioned so as to facilitate translation. Generally, operably linked sequences are contiguous and, in the case of a secretory leader, contiguous and in reading phase. Linking is achieved by ligation at restriction enzyme sites. If suitable restriction sites are not available, then synthetic oligonucleotide adapters or linkers can be used as is known to those skilled in the art. Sambrook et al., Molecular Cloning, A Laboratory Manual, 2nd ed., Cold Spring Harbor Press, (1989) and Ausubel et al., Short Protocols in Molecular Biology, 2nd ed., John Wiley & Sons (1992). Common promoters used in expression vectors include, but are not limited to, LTR or SV40 promoter, the E. coli lac or trp promoters, and the phage lambda PL promoter. Useful inducible plant promoters include heat-shock promoters (Ou-Lee et al. (1986) Proc. Natl. Acad. Sci. USA 83: 6815; Ainley et al. (1990) Plant Mol. Biol. 14: 949), a nitrate-inducible promoter derived from the spinach nitrite reductase gene (Back et al. (1991) Plant Mol. Biol. 17: 9), hormone-inducible promoters (Yamaguchi-Shinozaki et al. (1990) Plant Mol. Biol. 15: 905; Kares et al. (1990) Plant Mol. Biol. 15: 905), and light-inducible promoters associated with the small subunit of RuBP carboxylase and LHCP gene families (Kuhlemeier et al. (1989) Plant Cell 1: 471; Feinbaum et al. (1991) Mol. Gen. Genet. 226: 449; Weisshaar et al. (1991) EMBO J. 10: 1777; Lam and Chua (1990) Science 248: 471; Castresana et al. (1988) EMBO J. 7: 1929; Schulze-Lefert et al. (1989) EMBO J. 8: 651). Other promoters known to control the expression of genes in prokaryotic or eukaryotic cells can be used and are known to those skilled in the art. Expression vectors may also contain a ribosome binding site for translation initiation, and a transcription terminator. The vector may also contain sequences useful for the amplification of gene expression. Expression and cloning vectors can, and usually do, contain a selection gene or selection marker. Typically, this gene encodes a protein necessary for the survival or growth of the host cell transformed with the vector. Examples of suitable markers include dihydrofolate reductase (DHFR) or neomycin resistance for eukaryotic cells and tetracycline or ampicillin resistance for E. coli . Selection markers in plants include resistance to bleomycin, gentamycin, glyphosate, hygromycin, kanamycin, methotrexate, phleomycin, phosphinotricin, spectinomycin, streptomycin, sulfonamide and sulfonylureas. Maliga et al., Methods in Plant Molecular Biology , Cold Spring Harbor Press, 1995, p. 39. In addition, expression vectors can also contain marker sequences operatively linked to a nucleotide sequence for a protein that encode an additional protein used as a marker. The result is a hybrid or fusion protein comprising two linked and different proteins. The marker protein can provide, for example, an immunological or enzymatic marker for the recombinant protein produced by the expression vector. Suitable markers include, but are not limited to, alkaline phosphatase (AP), myc, hemagglutinin (HA), β-glucuronidase (GUS), luciferase, and green fluorescent protein (GFP). The polynucleotide sequences of the present disclosure may also be part of an expression cassette that at a minimum comprises, operably linked in the 5′ to 3′ direction, a regulatory sequence such as a promoter, a polynucleotide encoding a peptide of the present disclosure, and a transcriptional termination signal sequence functional in a host cell. The promoter can be of any of the types discussed herein, for example, a tissue specific promoter, a developmentally regulated promoter, an organelle specific promoter, a seed specific promoter, a plastid specific promoter, etc. The expression cassette can further comprise an operably linked targeting, transit, or secretion peptide coding region capable of directing transport of the protein produced. The expression cassette can also further comprise a nucleotide sequence encoding a selectable marker and/or a purification moiety. More particularly, the present disclosure includes recombinant constructs comprising an isolated polynucleotide sequence encoding the antifungal peptides of the present disclosure. The constructs can include a vector, such as a plasmid or viral vector, into which the sequence has been inserted, either in the forward or reverse orientation. The recombinant construct can further comprise regulatory sequences, including, for example, a promoter operatively linked to the sequence. Large numbers of suitable vectors and promoters are known to those skilled in the art and are commercially available. Different domains from different LysM RLKs may be combined to obtain chimeric proteins. Such a chimeric protein may possess a number of desirable properties that are not otherwise exhibited by one single protein that naturally exist in plants. Such desirable properties may include but are not limited to increased sensibility to chitin and its derivatives, increased kinase activity or enhanced kinase specificity. A further embodiment of the present disclosure relates to transformed host cells containing constructs comprising the oligonucleotide sequences of the present disclosure. For instance, various combination of the LysM RLK genes, in wild-type or mutated forms, may be introduced as transgenes into a host plant, such as soybean. In a preferred embodiment, the host plants is susceptible to fungal infection and the expression of the LysM RLK transgenes may confer certain degree of fungal resistance to the host. In addition to the LysM RLK genes, the transgenes may include other genes that may play a role in fungal defense, such as any of the CRGs whose forced expression may enhance the host's capability to defend against fungal pathogens. The host cell can be a higher eukaryotic cell, such as a mammalian or plant cell, or a lower eukaryotic cell such as a yeast cell, or the host can be a prokaryotic cell such as a bacterial cell. Introduction of the construct into the host cell can be accomplished by a variety of methods including calcium phosphate transfection, DEAE-dextran mediated transfection, Polybrene, protoplast fusion, liposomes, direct microinjection into the nuclei, scrape loading, and electroporation. In plants, a variety of different methods can be employed to introduce transformation/expression vectors into plant protoplasts, cells, callus tissue, leaf discs, meristems, etc., to generate transgenic plants. These methods include, for example, Agrobacterium -mediated transformation, particle gun delivery, microinjection, electroporation, polyethylene glycol-mediated protoplast transformation, liposome-mediated transformation, etc. (reviewed in Potrykus (1991) Annu. Rev. Plant Physiol. Plant Mol. Biol. 42: 205). Peptides produced by expression of the polynucleotides of the present disclosure can be obtained by transforming a host cell by any of the previously described methods, growing the host cell under appropriate conditions, inducing expression of the polynucleotide and isolating the protein(s) of interest. If the protein in retained within the host cell, the protein can be obtained by lysis of the host cells, while if the protein is a secreted protein, it can be isolated from the culture medium. Several methods are available for purification of proteins and are known to those of ordinary skill in the art. These include precipitation by, for example, ammonium sulfate or ethanol precipitation, acid extraction, anion or cation exchange chromatography, phosphocellulose chromatography, hydrophobic interaction chromatography, affinity chromatography, hydroxylapatite chromatography, lectin chromatography, high performance liquid chromatography (HPLC), electrophoresis under native or denaturing conditions, isoelectric focusing, and immunoprecipitation. Alternatively, peptides encoded by the polynucleotides of the present disclosure can be produced by chemical synthesis using either solid-phase peptide synthesis or by classical solution peptide synthesis also known as liquid-phase peptide synthesis. In oligomer-supported liquid phase synthesis, the growing product is attached to a large soluble polymeric group. The product from each step of the synthesis can then be separated from unreacted reactants based on the large difference in size between the relatively large polymer-attached product and the unreacted reactants. This permits reactions to take place in homogeneous solutions, and eliminates tedious purification steps associated with traditional liquid phase synthesis. Oligomer-supported liquid phase synthesis has also been adapted to automatic liquid phase synthesis of peptides. For solid-phase peptide synthesis, the procedure entails the sequential assembly of the appropriate amino acids into a peptide of a desired sequence while the end of the growing peptide is linked to an insoluble support. Usually, the carboxyl terminus of the peptide is linked to a polymer from which it can be liberated upon treatment with a cleavage reagent. In a common method, an amino acid is bound to a resin particle, and the peptide generated in a stepwise manner by successive additions of protected amino acids to produce a chain of amino acids. Modifications of the technique described by Merrifield are commonly used (see, e.g., Merrifield, J. Am. Chem. Soc. 96: 2989-93, 1964). In an automated solid-phase method, peptides are synthesized by loading the carboxy-terminal amino acid onto an organic linker (e.g., PAM, 4-oxymethylphenylacetamidomethyl), which is covalently attached to an insoluble polystyrene resin cross-linked with divinyl benzene. The terminal amine may be protected by blocking with t-butyloxycarbonyl. Hydroxyl- and carboxyl-groups are commonly protected by blocking with O-benzyl groups. Synthesis is accomplished in an automated peptide synthesizer, a number of which are commercially available. Following synthesis, the product may be removed from the resin. The blocking groups are removed typically by using hydrofluoric acid or trifluoromethyl sulfonic acid according to established methods (e.g., Bergot and McCurdy, Applied Biosystems Bulletin, 1987). Following cleavage and purification, a yield of approximately 60 to 70% is typically produced. Purification of the product peptides is accomplished by, for example, crystallizing the peptide from an organic solvent such as methyl-butyl ether, then dissolving in distilled water, and using dialysis (if the molecular weight of the subject peptide is greater than about 500 daltons) or reverse high-pressure liquid chromatography (e.g., using a C18 column with 0.1% trifluoroacetic acid and acetonitrile as solvents) if the molecular weight of the peptide is less than 500 daltons. Purified peptide may be lyophilized and stored in a dry state until use. Analysis of the resulting peptides may be accomplished using the common methods of analytical high pressure liquid chromatography (HPLC) and electrospray mass spectrometry (ES-MS). In general, transgenic plants comprising cells containing polynucleotides of the present disclosure can be produced by any of the foregoing methods; selecting plant cells that have been transformed on a selective medium; regenerating plant cells that have been transformed to produce differentiated plants; and selecting a transformed plant that expresses the protein(s) encoded by the polynucleotides of the present disclosure at a desired level. Specific methods for transforming a wide variety of dicots and obtaining transgenic plants are well documented in the literature (Gasser and Fraley, Science 244:1293, 1989; Fisk and Dandekar, Scientia Horticulturae 55:5, 1993; Dandekar and Fisk, Plant transformation: agrobacterium -mediated gene transfer. Methods Mol Biol. 2005; 286:35-46; Olhoft P M, Donovan C M, Somers D A, Soybean ( Glycine max ) transformation using mature cotyledonary node explants, Methods Mol Biol. 2006; 343:385-96; Ko T S, Korban S S, Somers D A, Soybean ( Glycine max ) transformation using immature cotyledon explants, Methods Mol Biol. 2006; 343:397-405; and all references cited therein). Successful transformation and plant regeneration have also been achieved in a variety of monocots. Specific examples are as follows: asparagus ( Asparagus officinalis ; Bytebier et al. (1987) Proc. Natl. Acad. Sci. USA 84: 5345); barley ( Hordeum vulgarae ; Wan and Lemaux (1994) Plant Physiol. 104: 37); maize ( Zea mays ; Rhodes et al. (1988) Science 240: 204; Gordon-Kamm et al. (1990) Plant Cell 2: 603; Fromm et al. (1990) Bio/Technology 8: 833; Koziel et al. (1993) Bio/Technology 11: 194); oats ( Avena sativa ; Somers et al. (1992) Bio/Technology 10: 1589); orchardgrass ( Dactylis glomerata ; Horn et al. (1988) Plant Cell Rep. 7: 469); rice ( Oryza sativa , including indica and japonica varieties; Toriyama et al. (1988) Bio/Technology 6: 10; Zhang et al. (1988) Plant Cell Rep. 7: 379; Luo and Wu (1988) Plant Mol. Biol. Rep. 6: 165; Zhang and Wu (1988) Theor. Appl. Genet. 76: 835; Christou et al. (1991) Bio/Technology 9: 957); rye ( Secale cereale ; De la Pena et al. (1987) Nature 325: 274); sorghum ( Sorghum bicolor ; Cassas et al. (1993) Proc. Natl. Acad. Sci. USA 90: 11212); sugar cane ( Saccharum spp.; Bower and Birch (1992) Plant J. 2: 409); tall fescue ( Festuca arundinacea ; Wang et al. (1992) Bio/Technology 10: 691); turfgrass ( Agrostis palustris ; Zhong et al. (1993) Plant Cell Rep. 13: 1); and wheat ( Triticum aestivum ; Vasil et al. (1992) Bio/Technology 10: 667; Weeks et al. (1993) Plant Physiol. 102: 1077; Becker et al. (1994) Plant J. 5: 299). All these references relate to transformation techniques in dicots or monocots and are hereby expressly incorporated into this disclosure by reference. Various LysM RLK genes show tissue specific expression in plants. Tissue specific promoters or other regulatory elements may play a role in controlling these tissue specific expression patterns. DNA recombination utilizing these regulatory elements may be employed to manipulate the expression pattern and/or levels of the various LysM RLK genes, or other genes in general. For instance, expression construct containing a tissue specific promoter may be used to drive the expression of a LysM RLK which is not otherwise expressed in the particular tissue. EXAMPLES The following examples are intended to provide illustrations of the application of the present disclosure. The following examples are not intended to completely define or otherwise limit the scope of the invention. Example 1 Plant LysM Domains are Highly Diversified The sequences of NFR1 (SEQ ID No. 1) and NFR5 (SEQ ID No. 2) genes from Lotus japonicus , as reported by Radutoiu et al. (2003) were used to identify genes encoding LysM domain-containing proteins by searching public databases of Arabidopsis , rice, poplar, M. truncatula , and L. japonicus . Soybean LYK genes were identified by shotgun sequencing bacterial artificial chromosomes (BACs) with homologies to LysM-encoding ESTs. The resulting putative LYK protein sequences from all species were then searched against the Pfam server to verify LysM and kinase domains. Collectively, a total of 49 LYK genes were identified in the six plant genomes, namely, those of Arabidopsis , rice, poplar, M. truncatula, L. japonicus and soybean, as summarized in Table 2. The predicted amino acid sequences of these genes or fragments were obtained and compared by sequence alignment, with representative alignments shown in FIG. 2 . TABLE 2LysM type receptor-like kinase genes from Arabidopsis,soybean, Lotus, Medicago, rice and poplar.Name (SEQ ID No.)Alias nameSourcesAtLYK1 (SEQ ID No. 3)At3g21630TAIRAtLYK2 (SEQ ID No. 4)At3g01840TAIRAtLYK3 (SEQ ID No. 5)At1g51940TAIRAtLYK4 (SEQ ID No. 6)At2g23770TAIRAtLYK5 (SEQ ID No. 7)At2g33580TAIRGmNFR1α (SEQ ID 54)GmW2098N11.16this studyGmNFR1β (SEQ ID 55)GmW2098N15.9this studyGmLYK2 (SEQ ID 56)GmW2098N11.15this studyGmLYK3 (SEQ ID 57)GmW2026N19.18this studyGmLYK4 (SEQ ID 58)GmW2095P01.22this studyGmNFR5α (SEQ ID 59)GmW2035N07.17this studyGmNFR5β (SEQ ID 60)GmW2095P01.23this studyGmLYK6 (SEQ ID 61)GmW2075N23this studyGmLYK7 (SEQ ID 62)GmW2035N07.16this studyGmLYK8 (SEQ ID 63)GmW2098N11.2this studyGmLYK9 (SEQ ID 64)GmW2069O12.22this studyGmLYK10 (SEQ ID 65)GmW2080D08.12this studyGmLYK11 (SEQ ID 66)GmW2042I24.15this studyLjNFR1 (SEQ ID 1)AJ575248Gene BankLjLYK2 (SEQ ID 67)TM0545.8KazusaLjLYK3 (SEQ ID 68)TM0545.9KazusaLjLYK4 (SEQ ID 69)TM0522.16KazusaLjNFR5 (SEQ ID 2)AJ575255Gene BankLjLYK6 (SEQ ID 70)TM0076a.10KazusaMtLYK1 (SEQ ID 71)CR936945.12Medicago truncatula sequencingresourcesMtLYK3 (SEQ ID 72)AY372402Gene BankMtLYK4 (SEQ ID 73)AY372403Gene BankMtLYK9 (SEQ ID 74)AC148241_11Medicago truncatula sequencingresourcesMtLYK10 (SEQ ID 75)AC148994_13Medicago truncatula sequencingresourcesMtLYK11 (SEQ ID 76)AC148994_15Medicago truncatula sequencingresourcesMtLYK12 (SEQ ID 77)AC126779_3Medicago truncatula sequencingresourcesMtLYK13 (SEQ ID 78)AC126779_4Medicago truncatula sequencingresourcesOsLYK1 (SEQ ID 79)LOC_Os01g36550TIGROsLYK2 (SEQ ID 80)LOC_Os06g41980TIGROsLYK3 (SEQ ID 81)LOC_Os06g41960TIGROsLYK4 (SEQ ID 82)LOC_Os02g09960TIGROsLYK5 (SEQ ID 83)LOC_Os03g13080TIGROsLYK6 (SEQ ID 84)LOC_Os11g35330TIGRPtLYK1 (SEQ ID 85)FGENESH1_PG.C_LG_VIII001701DOE JGIPtLYK2 (SEQ ID 86)FGENESH1_PG.C_LG_VII000997DOE JGIPtLYK3 (SEQ ID 87)EUGENE3.00051645DOE JGIPtLYK4 (SEQ ID 88)EUGENE3.00081504DOE JGIPtLYK5 (SEQ ID 89)EUGENE3.00400189DOE JGIPtLYK6 (SEQ ID 90)GRAIL3.0019013601DOE JGIPtLYK7 (SEQ ID 91)GRAIL3.0017002501DOE JGIPtLYK8 (SEQ ID 92)FGENESH1_PM.C_LG_I000490DOE JGIPtLYK9 (SEQ ID 93)EUGENE3.00570233DOE JGIPtLYK10 (SEQ ID 94)EUGENE3.00100714DOE JGIPtLYK11 (SEQ ID 95)eugene3.00570235DOE JGI More specifically, plant LysM protein sequences were first searched using the key word LysM and BLASTp (1e-20) using the LysM domains of LjNFR1 (SEQ ID No. 1) and LjNFR5 (SEQ ID No. 2) against the following publicly available databases: Arabidopsis ( Arabidopsis thaliana , database maintained by the Carnegie Institution of Washington Department of Plant Biology); rice ( Oryza sativa , database maintained by the Institute for Genomic Research (TIGR)); poplar ( Populus spp., database maintained by DOE's Joint Genome Institute); Medicago truncatula , database maintained by the lab of Nevin Young at the University of Minnesota); and Lotus japonicus (database maintained by the Kazusa DNA Research Institute in Japan. Domain structures of the resulting potential LysM proteins were analyzed with Pfam software and Inter-ProScan to identify LysM proteins. Soybean ( Glycine max ) LysM proteins were searched via tBLASTn (1e-5) using the same query sequences as above against two publicly available EST databases, one maintained by the Institute for Genomic Research, the other maintained by Monsanto. Primers were designed based on the resulting soybean EST sequences to probe a six-dimensional BAC pool for LysM-containing BACs via a PCR-based approach. The probed LYK-containing BACs were verified and shotgun sequenced to either finished phase (phase 3) at the Arizona Genome Sequencing Center or prefinished phase (phase 2) at the Washington University Genome Sequencing Center. BAC sequences were annotated using the dicot species model and Arabidopsis matrix of FGENESH. Annotated proteins were similarly analyzed to screen for LYK proteins. Signal peptides and transmembrane domains were predicted with SignalP using both nearest-neighbor and hidden Markov model (HMM) algorithms and transmembrane HMM, respectively. The GenBank accession numbers of soybean BACs are EF533702 for GMWb098N11; EF533695 for GMWb098N15; EF533696 for GMWb026N19; EF533701 for GMWb095P01; EF533697 for GMWb035N07; EF533699 for GMWb069O12; EF533700 for GMWb080D08; and EF533698 for GMWb042I24. LysM protein sequences from species spanning all kingdoms were extracted from Pfam and searched for LysM motifs at an E-value cutoff of 0.1. Sequence alignments were performed using ClustalX 1.83 (Thompson et al., 1997) with PHYLIP output format and edited in Jalview (Clamp et al., 2004). The average identities across the alignments for LysMe (type X), LysMn (type XI), and LYPb (type VII) were calculated based on the exported annotations in Jalview. An HMM profile calculated using hmmer (Eddy, 1998) for each alignment was used to realign (hmmalign) sequences at matching states (-m) to identify and remove indel regions. Parsimony trees were generated using the program protpars of PHYLIP (Felsenstein, 2000), with maximum-likelihood branch lengths calculated using TREE-PUZZLE (Schmidt et al., 2002). Distance trees were calculated using the program Protdist and Fitch of the PHYLIP package. Maximum-likelihood trees were calculated using the program proml of the PHYLIP package. Bootstrap values were calculated using the program seqboot of the PHYLIP package. Trees were viewed and rooted using A Tree Viewer (Zmasek and Eddy, 2001). For calculation of nucleotide substitution rates, codon-aligned nucleic acid sequences were created using CodonAlign 2.0. All insertions and deletions were removed except that a gap of more than 30 nucleotides was preferably retained to demonstrate the lack of the p loop and the activation loop in the kinase domains of LjNFR5 orthologs (Limpens et al., 2003; Madsen et al., 2003; Arrighi et al., 2006). Nucleotide substitution levels were calculated using the program codeml of the PAML package (Yang, 1997) with a user-defined parsimony tree. To build microsynteny maps, genomic sequences surrounding each LYK gene, about 0.5 to 0.9 Mb in length, were extracted from the above databases and from soybean BAC sequences, which are about 100 to 170 kb in length. The genomic sequences were annotated using dicot species model and Arabidopsis matrix of FGENESH for the five dicot plants and monocot species model and rice matrix for rice. The annotated protein sequences were compiled together into a peptide sequence database. Repetitive sequences were excluded from the databases. BLASTp was used to compare proteins against the database with an E-value cutoff of 1e-20 and a percent identity cutoff of 35% between species and 40% within same species and legumes. BLASTp results were then filtered once to remove retroelements. The microsynteny maps were finally drawn in Adobe Illustrator 10.0. Example 2 Induction of Gene Expression in Arabidopsis Treated with Chitin A total of five LysM receptor-like kinase genes were identified in Arabidopsis from the studies described in Example 1. The Genbank numbers of these five genes are AtLYK1 (GenBank accession #At3g21630), AtLYK2 (GenBank accession # At3g01840), AtLYK3 (GenBank accession #At1g51940), AtLYK4 (GenBank accession # At2g23770), AtLYK5 (GenBank accession #At2g33580), and, which are designated as SEQ ID. Nos. 3-7, respectively. A DNA microarray experiment was performed by treating Arabidopsis plants with chitin. Leaves were treated by spraying with chitin (100 μM)+0.2% Tween-20. The Affymetrix 24K Arabidopsis genome chip was utilized according to the manufacturer's instructions for this test. The data obtained showed that transcription of 3 of the 5 Arabidopsis LysM RLK genes, At2g33580 (13-fold), At3g21630 (2-fold) and At2g23770 (2-fold), was significantly increased by treating the plants with chitin. The data implicate these genes in plant chitin response. Example 3 LysM RLK Mutants in Arabidopsis To test whether non-leguminous LysM RLKs may be involved in the perception of chitooligosaccharides and the subsequent induction of downstream genes that have been implicated in fungal defense, T-DNA insertion mutants were obtained for all five LysM RLK genes (i.e., At1g51940, At2g23770, At2g33580, At3g01840, and At3g21630) in Arabidopsis . The gene At3g21630 (SEQ ID. No. 3) is also termed AtLYK1 or AtLysM RLK1. Homozygous mutants were then treated with a purified chitooligosaccharide (chitooctaose) and the expression levels of known CRGs, such as MPK3 (At3g45640, SEQ ID. No. 8), WRKY22 (At4g01250, SEQ ID. No. 9), WRKY29 (At4g23550, SEQ ID. No. 10), WRKY33 (At2g38470, SEQ ID. No. 11), and WRKY53 (At4g23810, SEQ ID. No. 12), were measured. More particularly, Arabidopsis seedlings were grown hydroponically as described by Ramonell et al., 2005. Fourteen-day old seedlings were treated with chitooctaose (Sigma, St. Louis, Mo., USA) at a concentration of 1 μM or with distilled water (as a control) for 30 minutes. To test flagellin-responsive genes, 14-day old seedlings were also treated with the flagellinderived flg22 peptide (dissolved in dimethyl sulfoxide, DMSO) at a final concentration of 10 μM or with an equivalent amount of DMSO (as a control) for 30 minutes. To test other defense pathways, Arabidopsis seedlings were also treated for 24 hours with 5 mM SA, 100 μM MeJA, and 0.5 mM ACC (all obtained from Sigma, St. Louis, Mo., USA) and dissolved in 0.1% ethanol. The control plants were similarly treated with an equivalent amount of ethanol. After treatment, the seedlings were collected and frozen in liquid nitrogen for RNA isolation. Total RNA was isolated using the Trizol Reagent according to the manufacturer's instructions (Invitrogen, Carlsbad, Calif.). The isolated RNA was further purified using Qiagen RNeasy Mini Columns according to the manufacturer's instruction (Qiagen, Valencia, Calif., USA) and treated with Turbo™ DNase (Ambion, Austin, Tex., USA). For semi-quantitative RT-PCR or quantitative 17 PCR, cDNA was synthesized using M-MLV reverse transcriptase according to the manufacturer's instructions (Promega, Madison, Wis., USA). Semi-Quantitative RT-PCR. The gene-specific primer pairs (forward and reverse) for detecting the following selected chitooligosaccharide-responsive genes (CRGs) are: For MPK3 (At3g45640):5′-CTCACGGAGGACAGTTCATAAG-3′(SEQ ID No. 13)and5′-GAGATCAGATTCTGTCGGTGTG-3′(SEQ ID No. 14)For WRKY22 (At4g01250):5′-GTAAGCTCATCAGCTACTACCAC-3′(SEQ ID No. 15)and5′-ACCGCTAGATGATCCTCAACAG-3′(SEQ ID No. 16)for WRKY29 (At4g23550):5′-ATGGACGAAGGAGACCTAGAAG-3′(SEQ ID No. 17)and5′-CCGCTTGGTGCGTACTCGTTTC-3′(SEQ ID No. 18)For WRKY33 (At2g38470):5′-CTCCGACCACAACTACAACTAC-3′(SEQ ID No. 19)and5′-GGCTCTCTCACTGTCTTGCTTC-3′(SEQ ID No. 20)For WRKY53 (At4g23810):5′-CCTACGAGAGATCTCTTCTTCTG-3′(SEQ ID No. 21)and5′-AGATCGGAGAACTCTCCACGTG-3′(SEQ ID No. 22) As an internal control, the following forward and reverse primers of actin-2 (At3g18780) were included in the same PCR reaction with each primer pair of the above genes: 5′-GACTAAGAGAGAAAGTAAGAGATAATCCAG-3′(SEQ ID No. 23)and5′-CAGCCTTTGATTTCAATTTGCATGTAAGAG-3′.(SEQ ID No. 24) PCR reactions were conducted using Taq polymerase (Promega, Madison, Wis., USA) under the following conditions: 94° C., 3 minutes; 94° C., 30 seconds; 55° C., 30 seconds; 72° C., 1.5 minutes; 25 cycles; 72° C., 3 minutes. The corresponding CRG genes in Lotus japonicus were identified by blasting the cDNA sequences of the above Arabidopsis CRGs (and also actin-2) against the TIGR Lotus japonicus Gene Index. The closest hits were chosen and arbitrarily named after their Arabidopsis counterparts with the prefix Lj (standing for Lotus japonicus ). The following primer pairs were designed to detect these genes: For LjMPK3 (TC8079):5′-CACCCTTGCGTAGAGAGTTTACTGATGTC-3′,(SEQ ID No. 25)and5′-GTTGACGAGGATATTGAGGAAGTTGTCTG-3′;(SEQ ID No. 26)For LjWRKY22 (AV423663):5′-TCACCTTGCTGGTTCTGGTTCTGGTTCTG-3′,(SEQ ID No. 27)and5′-TCTGATAGGGGTGCAACCCCATCTTCTTC-3′;(SEQ ID No. 28)For LjWRKY33 (TC14849):5′-AGTTGTGGTTCAGACCACCAGTGACATTG-3′(SEQ ID No. 29)and5′-ACCCCATTGAGTTTCCAAACCCTGATGAG-3′;(SEQ ID No. 30)For LjWRKY53 (TC9074):5′-CCCATCAAAAGAACCAACCACAACAAGAG-3′(SEQ ID No. 31)and5′-ATCCGCACGCACTTGAACCATGTATTGTG-3′;(SEQ ID No. 32)For LjActin-2 (TC14247):5′-AAGGTTCGTAAACGATGGCTGATGCTGAG-3′(SEQ ID No. 33)and5′-ACCTTGATCTTCATGCTGCTAGGAGCAAG-3′.(SEQ ID No. 34) LjActin-2 was used as an internal control. Quantitative PCR. To quantify gene expression using quantitative PCR, the forward and reverse primers of each gene were as follows: For PR-1 (At2g14610, SEQ ID. No. 35):(SEQ ID No. 36)5′-AACACGTGCAATGGAGTTTGTGGTCACT-3′and(SEQ ID No. 37)5′-ACCATTGTTACACCTCACTTTGGCACAT-3′;For PDF1.2 (At5g44420, SEQ ID. No. 38):(SEQ ID No. 39)5′-AGTGCATTAACCTTGAAGGAGCCAAACAT-3′and(SEQ ID No. 40)5′-AACAGATACACTTGTGTGCTGGGAAGACA-3′;For MPK3 (At3g45640):(SEQ ID No. 41)5′-TGGCCATTGATCTTGTTGACAGAATGTTGA-3′and(SEQ ID No. 42)5′-TCGTGCAATTTAGCAAGGTACTGGTGATT-3′;for WRKY53 (At4g23810):(SEQ ID No. 43)5′-TTTAGGCGCCAAATTCCCAAGGAGTTATT-3′and(SEQ ID No. 44)5′-TCTGGACTTGTTTCGTTGCCCAACAGTTT-3′;For actin-2 (At3g18780):(SEQ ID No. 45)5′-GGTATTCTTACCTTGAAGTATCCTATTG-3′and(SEQ ID No. 46)5′-CTCATTGTAGAAAGTGTGATGCCAGATC-3′. Actin-2 was used as an internal control to normalize gene expression across different samples. The reactions were conducted on a 7500 Real-Time PCR System (Applied Biosystems, Foster City, Calif., USA) using the SYBR®Green Master Mix (Applied Biosystems, Foster City, Calif., USA) with the following PCR conditions: 95° C., 10 minutes; 95° C., 15 seconds; 60° C., 1 minute; 40 cycles; followed by the dissociation curve analysis to verify single amplicon. The fold change in the target gene, normalized to actin-2 and relative to the gene expression in the control sample, was calculated as described in Ramonell et al., 2002. The AtLysM RLK1 insertion mutant (096F09) used in the current work was generated in the context of the GABI-Kat program and provided by Bernd Weisshaar (MPI for Plant Breeding Research, Cologne, Germany). See Shibuya et al., 2001. The homozygous plants were identified by genotyping using the following gene-specific primers: 5′-AGAATATATCCACGAGCACACGGTTCCAG-3′(SEQ ID No. 47)(forward),and5′-GACGAAAAGAGAGTGGATAAAGCAACCAC-3′(SEQ ID No. 48)(reverse) together with the T-DNA left border primer: 5′-CCCATTTGGACGTGAATGTAGACAC-3′.(SEQ ID No. 49) These two primers were also used to detect the expression of the AtLysM RLK1 gene via RT-PCR. The other primers used to detect the transcript 5′ of the insertion site were as follows: 5′-ATGAAGCTAAAGATTTCTCTAATCGCTC-3′,(SEQ ID No. 50)and5′-GAAATGCACCATTTGGATCTCTTCCAG-3′(SEQ ID No. 51) The mutants of the other 4 Arabidopsis LysM RLK genes were obtained from the SALK Institute and Syngenta Incorporation through the Arabidopsis Basic Research Center (ABRC) or from the Martienssen lab at the Cold Spring Harbor Laboratory. One insertion mutant designated as L3 with an insertion in gene At1g51940 exhibited an interesting phenotype. This mutant showed enhanced expression of some defense-related genes, such as PR-2 and PR-1, as shown in FIG. 3 . The PR-2 gene (AT3G57260, SEQ ID. No. 52) encodes a β-1,3-glucanase, which is an enzyme that degrades the fungal cell wall component glucan to inhibit fungal infection. PR-1 (SEQ ID. No. 35) has also been shown to be involved in plant defense against pathogens, especially bacterial pathogens. This enhanced expression of defense genes suggests that the mutant may be resistant to fungal pathogens. The test of this mutant with a fungal pathogen called Botrytis cinerea demonstrated that the mutant is resistant to this fungal pathogen, as shown in FIG. 4A . B. cinerea is a necrotrophic fungus, and dead plants were assessed as those having no remaining green, only yellowish leaves. The L3 mutant demonstrated increased resistance relative to the wild-type plant. In addition, the L3 mutant showed decreased susceptibility to the bacterial pathogen Pseudomonas syringae strain DC3000, as shown in FIG. 4B . The enhanced resistance is likely due to the knockout of the specific LysM receptor kinase gene. Analysis of expression of the At1g51940 gene in the L3 mutant failed to detect the mRNA. Therefore, the lack of At1g51940 gene expression correlates with elevated PR1 expression and enhanced disease resistance. This suggests that At1g51940 may act normally to repress the disease resistance response according to a model pathway of the involvement of the LYSM RK in plant defense, as shown in FIG. 5 . Therefore, it is possible to make plants more resistant to fungal pathogens by either knocking out or knocking down the expression of this gene. Furthermore, dominant negative forms of this protein may also be made and employed to modulate plant fungal resistance. Another insertion mutant, corresponding to At3g21630, or AtLYK1 (designated hereafter as AtLysM RLK1), almost completely blocked the induction of all the selected CRGs ( FIG. 6A ), suggesting a critical role of AtLysM RLK1 in the perception of chitooligosaccharides. Both the mutant (Mu) and wildtype (WT) plants were treated with purified chitooctaose or water (as a control) for 30 minutes and gene expression of the selected CRGs was detected using semi-quantitative RT-PCR. Actin-2 was used as an internal control. The amplification of both actin-2 and a CRG was conducted in the same tube. The AtLysM RLK1 gene (SEQ ID. No. 3) is 2988 nucleotides (nts) long, with 11 introns ( FIG. 6B ) and a coding sequence of 1854 nts. Square boxes represent exons. Solid lines between them are introns. The start codon (ATG) and stop codon (TAG) are included in the first and last exon, respectively. The two T-DNA insertions (T-DNA1 and 2) inserted in the 10th intron in the AtLysM RLK1 mutant are indicated above the gene. LB: left border; RB: right border. The AtLysM RLK1 gene encodes a LysM RLK of 617 amino acids (SEQ ID No. 53), with an extracellular domain (containing 3 predicted LysM motifs), a transmembrane domain (TM), and an intracellular serine/threonine kinase domain. FIG. 6C illustrates the predicted domain structure of AtLysM RLK1. S: signal peptide; LysM: LysM domain; TM: transmembrane domain; Ser/Thr Kinase: Serine/Threonine kinase domain. AtLysM RLK1 has been shown to be phylogenetically related to the Nod signal receptor NFR1. Zhang et al., 2007. Two T-DNA insertions were identified in the AtLysM RLK1 mutant, separated by 4 nts, in the 10th intron ( FIG. 6B ). RT-PCR analysis using primers corresponding to the exon regions on the side of the 10th intron failed to detect mRNA expression in the AtLysM RLK1 mutant; however, a truncated transcript derived from the gene sequence before the intron was detected by RT-PCR ( FIGS. 7A and 7B ), suggesting the T-DNA insertions in the intron blocked full-length transcription of the gene. To confirm that the observed changes in CRGs expression were caused by the mutation in the AtLysM RLK1 gene, the mutant was complemented with the full-length AtLysM RLK1 cDNA driven by the constitutive Cauliflower Mosaic Virus (CMV) 35S promoter. More specifically, the full-length CDS (1854 nucleotides long) was obtained by RT-PCR and cloned in the Eco RV site of the pBluescript vector. The confirmed sequence was further cloned into the modified binary 16 vector pCAMBIA1200 that contains a 35S promoter-Multiple Cloning Sites (MCS)-poly A signal, downstream of the 35S promoter. The final construct was electroporated into Agrobacterium tumafaciens EHA 105 according to the procedures described by Stacey and Shibuya, 1997. The resultant A. tumafaciens was then used to transform the homozygous AtLysM RLK1 mutant via floral dipping as described by Passarinho et al., 2002. Multiple transgenic lines were obtained. The complemented plants were treated with chitooctaose or water (as a control) at a final concentration of 1 μM for 30 minutes. RT-PCR data show that the selected CRGs were induced to a level in the selected complemented plants (Com-1 and Com-2) similar to the level in the wild type (WT) plants ( FIG. 8 ). Com-1 and Com-2 are two independent complemented lines and WT is wild-type Col-0 plants. Thus, the complemented plants showed restored induction of those selected CRGs, confirming that it was the insertions in the AtLysM RLK1 gene that caused the observed change in gene expression. The complementation data also ruled out the possibility that a truncated protein translated from the observed truncated transcript may have affected the expression of the selected CRGs. The expression pattern of the AtLysM RLK1 gene was also studied. RT-PCR data show that AtLysM RLK1 is expressed ubiquitously in the whole plant, in tissues such as root, rosette leaf, cauline leaf, stem, inflorescence, silique, flower bud, open flower, and pollen, with the lowest expression levels in pollen ( FIG. 9 ). Interestingly, this gene was induced by chitooligosaccharides, but not by the flg22 peptide derived from flagellin, a PAMP (pathogen-associated molecular pattern) produced by pathogenic bacteria ( FIG. 10 ) (Gomez-Gomez et al., 2000), suggesting a specific role of this gene in chitooligosaccharide signaling. More specifically, for experiment (A), fourteen-day-old, hydroponically grown seedlings were treated for 30 minutes with chitooctaose at a final concentration of 1 μM or with distilled water (as a control); for experiment (B), the seedlings were treated with flg22 (dissolved in DMSO) at a final concentration of 10 μM or with an equivalent amount of DMSO (as a control). Gene expression profiles in the AtLysM RLK1 mutant in response to chitooctaose were studied using the Affymetrix Arabidopsis Whole Genome Array ATH1 (with ˜22000 genes), with wild-type plants as a control. Data analysis showed that a total of 909 genes responded more than 1.5 fold (P<0.05) to chitooctaose elicitation in both the wild-type and mutant plants 30 minutes after the treatment ( FIG. 11A ). A row represents a gene and each column represents a sample. WT-8mer=wild-type Col-0 treated with chitooctaose; WT-water=wild-type Col-0 treated with distilled water; Mu-water=the AtLysM RLK1 mutant treated with distilled water; Mu-8mer=the AtLysM RLK1 mutant treated with chitooctaose. The color bar below the cluster picture: the red color indicates the expression level of a gene is above the mean expression of the gene across all samples; the green color indicates expression lower than the mean. These genes can be separated into two groups: up- and down-regulated by chitooctaose, as represented by the two large clusters in FIG. 11A . Out of the 909 genes tested, 890 showed a change in transcript levels in the wild-type plants in response to chitooctaose, with 663 up-regulated and 227 down-regulated ( FIG. 11B , 11 C and Table 3). Up-regulated genes: 1.5 fold, P<0.05. Down-regulated genes: 1.5 fold, P<0.05. By contrast, only 33 genes out of 909 were responsive in the mutant, with 16 up-regulated and 17 down-regulated ( FIGS. 11B and 11C ; Table 4). Among the 33 genes, 14 genes (3 up- and 11 down-regulated) were also similarly regulated in the wild-type plants (rows 1 to 15 in Table 4), leaving only 19 genes that appeared to be differentially regulated by chitooctaose in the mutant (rows 16-34 in Table 4). However, 13 of these genes showed a similar regulation trend (up- or down-regulation) in the wild-type plants to that in the mutant, although such a trend was not considered significant in the wild-type plants (rows 16 to 28 in Table 4). TABLE 3Genes that are Responsive to chitooctaose in Wild-typeWTMuProbe setAnnotationAccessionFCFCWT PMu P245613_athypothetical proteinAt4g1445072.79−1.80.0190180.836714249197_atputative protein contains similarity toAt5g4238051.631.060.0193590.866994calmodulin; supported by full-length cDNA:Ceres: 99348.258947_athypothetical protein similar to calmodulin-likeAt3g0183043.331.580.0121480.103554protein GB: CAB42906 [ Arabidopsis thaliana ]; PfamHMM hit: EF hand; supported by full-length cDNA:Ceres: 7252.260399_atputative lipoxygenase similar to lipoxygenaseAt1g7252041.48−1.110.0091830.804844GB: CAB56692 [ Arabidopsis thaliana ]; supported bycDNA: gi_15810254_gb_AY056166.1 —257540_athypothetical proteinAt3g2152034.951.080.0016870.921695256526_atdisease resistance protein, putative similar to diseaseAt1g6609033.68−1.130.016280.597847resistance protein RPP1-WsA [ Arabidopsis thaliana ]GI: 3860163; supported by full-length cDNA: Ceres:93530.250796_atputative protein similar to unknown proteinAt5g0530031.561.10.0041670.773037(gb|AAF01528.1)261474_atanionic peroxidase, putative similar to anionicAt1g1454030.96−1.020.0014140.955549peroxidase GI: 170202 from [ Nicotiana sylvestris ]245755_athypothetical protein predicted byAt1g3521030.5−1.110.017890.881393genemark.hmm; supported by full-length cDNA:Ceres: 42217.254231_atputative protein AR411- Arabidopsis thaliana (thaleAt4g2381028.21−1.250.0184010.425568cress), PID: g1669603; supported by cDNA:gi_13507100_gb_AF272748.1_AF272748248322_atputative protein similar to unknown proteinAt5g5276026.141.310.0046930.152597(emb|CAA71173.1)249770_atunknown protein; supported by full-length cDNA:At5g2411025.43−1.060.0354830.869658Ceres: 6469.247215_atExpressed protein; supported by full-length cDNA:At5g6490524.841.240.048830.449026Ceres: 3657.265725_atputative alanine acetyl transferaseAt2g3203023.731.080.0275840.473742266821_atputative ethylene response element binding proteinAt2g4484023.69−1.220.0198990.271281(EREBP); supported by full-length cDNA:Ceres: 6397.248904_atExpressed protein; supported by full-length cDNA:At5g4629523.69−1.490.0079530.428724Ceres: 18973.261648_atsalt-tolerance zinc finger protein identical to salt-At1g2773022.71−1.090.0162390.33423tolerance zinc finger protein GB: CAA64820GI: 1565227 from [ Arabidopsis thaliana ]; supportedby cDNA: gi_14334649_gb_AY034998.1 —262085_athypothetical protein predicted by genemark.hmmAt1g5606022.371.360.0010150.285112261021_athypothetical protein similar to reticuline oxidase-likeAt1g2638022.22.370.0046970.108353protein GB: CAB45850 GI: 5262224 from[ Arabidopsis thaliana ]; supported by cDNA:gi_13430839_gb_AF360332.1_AF360332263182_atExpressed protein; supported by full-length cDNA:At1g0557519.34−1.020.0056520.804382Ceres: 27081.249417_atcalcium-binding protein-like cbp1 calcium-bindingAt5g3967018.84−1.030.0127770.874622protein, Lotus japonicus , EMBL: LJA251808;supported by cDNA:gi_16648829_gb_AY058192.1 —254120_atputative mitochondrial uncoupling proteinAt4g2457018.47−1.260.0068940.121685mitochondrial uncoupling protein, Arabidopsisthaliana (thale cress), PATX: E1316826; supportedby full-length cDNA: Ceres: 119476.264153_atdisease resistance protein RPS4, putative similar toAt1g6539017.77−1.010.0067570.837017disease resistance protein RPS4 GI: 5459305 from[ Arabidopsis thaliana ]249264_s_atdisease resistance protein-likeAt5g4174017.161.010.0160320.965149246821_atcalmodulin-binding-like protein calmodulin-At5g2692016.58−1.220.0020330.305516binding protein TCB60, Nicotiana tabacum ,EMBL: U58971265327_atunknown proteinAt2g1821016.02−1.080.0073120.847704252131_atBCS1 protein-like protein Homo sapiens h-bcs1At3g5093015.811.280.0207270.19657(BCS1) mRNA, nuclear gene encodingmitochondrial protein which is involved in theexpression of functional mitochondrial ubiquinol-cytochrome c reductase complex probably via thecontrol of expression of Riesk245840_athypothetical protein predicted byAt1g5842015.76−1.160.0019290.649675genemark.hmm; supported by full-length cDNA:Ceres: 124269.245041_atAR781, similar to yeast pheromone receptorAt2g2653015.71−1.40.0115140.105739identical to GB: D88743, corrected a frameshiftfound in the original record (at 69530 bp), sequencesubmitted has been verified from 10 sequenceelectropherograms. The translation now starts froman upstream ATG.248799_atethylene responsive element binding factor 5At5g4723015.6−1.360.0052080.117072(ATERF5) (sp|O80341); supported by cDNA:gi_14326511_gb_AF385709.1_AF385709250149_atcinnamoyl CoA reductase-like protein cinnamoylAt5g1470015.46−1.130.0228770.554222CoA reductase, Populus tremuloides ,EMBL: AF217958; supported by full-length cDNA:Ceres: 17229.256306_atlipase, putative contains Pfam profile: PF01764:At1g3037015.31.110.008660.751633Lipase246777_atRING-H2 zinc finger protein-like RING-H2 zincAt5g2742014.67−1.440.0118030.037951finger protein ATL6- Arabidopsis thaliana ,EMBL: AF132016; supported by full-length cDNA:Ceres: 106078.263783_atputative WRKY-type DNA binding protein;At2g4640014.411.260.0055890.126494supported by cDNA:gi_15430276_gb_AY046275.1 —245369_atExpressed protein; supported by full-length cDNA:At4g1597514.341.030.003660.920236Ceres: 124835.251336_atputative protein hypothetical protein F4I18.26-At3g6119014.311.070.0076650.724447Arabidopsis thaliana , PIR: T02471; supported by full-length cDNA: Ceres: 30454.260046_atExpressed protein; supported by cDNA:At1g7380013.5510.0102170.9771gi_16648699_gb_AY058126.1 —260068_atputative calmodulin-binding protein similar toAt1g7380513.351.160.0073830.51944calmodulin-binding protein GB: AAB37246[ Nicotiana tabacum ]266071_atunknown proteinAt2g1868013.321.110.0042160.713949253643_athypothetical protein; supported by full-lengthAt4g2978013.05−1.110.0023830.344174cDNA: Ceres: 249769.264213_athypothetical protein contains similarity to lectinAt1g6540012.76−1.170.0214980.255697polypeptide GI: 410436 from [ Cucurbita maxima ]262382_atvirus resistance protein, putative similar to virusAt1g7292012.68−1.40.0031890.073493resistance protein GI: 558886 from [ Nicotianaglutinosa ]247543_atDNA binding protein-like DNA binding proteinAt5g6160012.31−1.310.0148620.112814EREBP-4, Nicotiana tabacum ,PIR: T02434; supported by full-length cDNA:Ceres: 92102.256442_athypothetical protein predicted byAt3g1093011.62−1.070.0252880.782271genefinder; supported by full-length cDNA:Ceres: 12509.253060_atputative protein predicted protein, ArabidopsisAt4g3771011.561.340.0057210.412461thaliana ; supported by full-length cDNA:Ceres: 207350.253915_atputative protein centrin, Marsilea vestita ; supportedAt4g2728011.5−1.070.011850.333253by full-length cDNA: Ceres: 13072.249928_atCCR4-associated factor-like proteinAt5g2225011.41−1.170.0090430.204172245711_atputative c2h2 zinc finger transcription factorAt5g0434011.35−1.110.0166730.392119261892_attranscription factor, putative similar to WRKYAt1g8084011.271.090.0069540.498704transcription factor GB: BAA87058 GI: 6472585from [ Nicotiana tabacum ]; supported by full-lengthcDNA: Ceres: 6437.261394_atwall-associated kinase 2, putative similar to wall-At1g7968011.051.080.0030740.819188associated kinase 2 GI: 4826399 from [ Arabidopsisthaliana ]251774_atnematode resistance protein-like protein Hs1pro-1At3g5584011.02−1.370.0077950.481526nematode resistance gene, Beta procumbens,EMBL: BPU79733; supported by full-length cDNA:Ceres: 149697.265723_atputative disease resistance proteinAt2g3214010.991.180.0169810.537825255339_athypothetical protein similar to A. thalianaAt4g0448010.831.320.0123670.514455hypothetical protein F1N20.130, GenBank accessionnumber AL022140251054_atreceptor like protein kinase receptor like proteinAt5g0154010.66−1.010.0039490.917593kinase- Arabidopsis thaliana , EMBL: ATLECGENE;supported by cDNA:gi_13605542_gb_AF361597.1_AF361597253827_atExpressed protein; supported by cDNA:At4g2808510.37−1.090.0107970.530514gi_15028040_gb_AY045877.1 —255945_atputative proteinAt5g2861010.061.210.0103660.464865249618_atputative protein predicted proteins, ArabidopsisAt5g374909.99−1.090.0047190.814525thalina248934_atserine/threonine protein kinase-like proteinAt5g460809.94−1.170.0076050.645509261037_atlipoxygenase identical to GB: CAB56692 fromAt1g174209.88−1.10.0023510.775492( Arabidopsis thaliana )267623_atunknown proteinAt2g396509.87−1.120.0067440.439834259428_atMAP kinase, putative similar to MAP kinase 5At1g015609.841.540.0024580.135149GI: 4239889 from [ Zea mays ]246927_s_atnodulin-like protein nodulin, Glycine max,At5g252609.741.60.0046230.163075EMBL: AF065435264758_atlate embryogenesis abundant protein, putativeAt1g613409.731.170.0166260.389155similar to late embryogenesis abundant proteinGI: 1350540 from [ Picea glauca ]245329_atExpressed protein; supported by full-length cDNA:At4g143659.71.420.0024860.029582Ceres: 37809.262072_athypothetical protein predicted byAt1g595909.54−1.120.0094520.599212genemark.hmm; supported by full-length cDNA:Ceres: 99553.255844_atputative protein kinase contains a protein kinaseAt2g335809.421.110.0066110.553845domain profile (PDOC00100)253632_atsenescence-associated protein homolog senescence-At4g304309.291.220.0041840.351697associated protein 5-Hemerocallis hybridcultivar, PID: g3551954; supported by full-lengthcDNA: Ceres: 122632.257511_athypothetical proteinAt1g430009.29−1.130.0209840.846669253999_at1-aminocyclopropane-1-carboxylate synthase-likeAt4g262009.24−1.560.0041290.115048protein ACC synthase, Malus domestica , U73816265920_s_atunknown proteinAt2g151209.131.330.0016820.33404263800_athypothetical protein predicted by genscan; supportedAt2g246008.971.020.0144570.769925by cDNA: gi_15810330_gb_AY056204.1 —248164_atputative protein similar to unknown proteinAt5g544908.97−1.170.0087670.190232(pir||T05752); supported by full-length cDNA:Ceres: 109272.265597_atExpressed protein; supported by cDNA:At2g201458.96−10.0234290.965819gi_13605516_gb_AF361584.1_AF361584248327_atputative protein similar to unknown proteinAt5g527508.93−1.040.0170970.808905(emb|CAA71173.1); supported by full-length cDNA:Ceres: 19542.252908_atputative proteinAt4g396708.561.170.0126610.466742251400_atputative protein prib5, Ribes nigrum ,At3g604208.531.640.0292450.023237EMBL: RNI7578; supported by full-length cDNA:Ceres: 31361.261475_atanionic peroxidase, putative similar to anionicAt1g145508.511.410.011030.395333peroxidase GI: 170202 from [ Nicotiana sylvestris ]256185_atdof zinc finger protein identical to dof zinc fingerAt1g517008.47−1.090.0015650.51485protein [ Arabidopsis thaliana ] GI: 3608261;supported by cDNA:gi_3608260_dbj_AB017564.1_AB017564250493_atputative protein various predicted proteins,At5g098008.28−1.060.0107870.857557Arabidopsis thaliana252679_atCCR4-associated factor 1-like proteinAt3g442608.27−1.270.0004840.065446CAF1_MOUSE CCR4-ASSOCIATED FACTOR 1-Mus musculus , SWISSPROT: CAF1_MOUSE;supported by cDNA:gi_15292828_gb_AY050848.1 —265797_atExpressed protein; supported by full-length cDNA:At2g357158.26−1.270.0058170.60028Ceres: 9996.248448_atputative protein contains similarity to ethyleneAt5g511908.25−1.10.0096350.575899responsive element binding factor; supported by full-length cDNA: Ceres: 2347.255884_athypothetical protein predicted byAt1g203108.15−1.190.0228520.204061genemark.hmm; supported by full-length cDNA:Ceres: 8562.261449_atputative ATPase similar to GB: AAF28353 fromAt1g211207.971.460.0049550.182958[ Fragaria x ananassa ]265841_atputative glycogeninAt2g357107.96−1.270.0115870.280483251895_atclass IV chitinase (CHIV)At3g544207.95−1.090.0031420.722712263935_atunknown proteinAt2g359307.89−1.060.0061850.342267255502_atcontains similarity to a protein kinase domain (Pfam:At4g024107.89−1.070.0033650.691648pkinase.hmm, score: 166.20) and to legume lectinsbeta domain (Pfam: lectin_legB.hmm, score: 139.32)258787_athypothetical protein predicted by genscan; supportedAt3g118407.84−1.130.0364630.37994by full-length cDNA: Ceres: 100676.266658_atExpressed protein; supported by full-length cDNA:At2g257357.71−1.470.0039420.026409Ceres: 7152.245250_atethylene responsive element binding factor-likeAt4g174907.541.060.0082420.704323protein (AtERF6); supported by cDNA:gi_3298497_dbj_AB013301.1_AB013301247487_atputative protein predicted protein, ArabidopsisAt5g621507.391.010.0053880.945249thaliana261470_atethylene-responsive element binding factor, putativeAt1g283707.33−1.170.0055280.478834similar to ethylene-responsive element binding factorGI: 8809573 from [ Nicotiana sylvestris ]; supported byfull-length cDNA: Ceres: 27635.262381_atvirus resistance protein, putative similar to virusAt1g729007.27−1.190.0065280.311035resistance protein GI: 558886 from [ Nicotianaglutinosa ]248123_atputative protein similar to unknown proteinAt5g547207.231.290.0062140.245803(gb|AAD32884.1)263379_atputative CCCH-type zinc finger protein also anAt2g401407.211.010.0049110.848966ankyrin-repeat protein263584_atNAM (no apical meristem)-like protein similar toAt2g170407.13−1.290.0060990.12014petunia NAM (X92205) and A. thaliana sequencesATAF1 (X74755) and ATAF2 (X74756); probableDNA-binding protein; supported by cDNA:gi_13605646_gb_AF361804.1_AF361804259566_athypothetical proteinAt1g205207.04−1.140.0241450.734624267028_atputative WRKY-type DNA binding proteinAt2g384707.02−1.190.0096420.27064265008_atMlo protein, putative similar to Mlo proteinAt1g615606.991.20.002980.470024GI: 1877220 from [ Hordeum vulgare ]; supported bycDNA: gi_14091581_gb_AF369567.1_AF369567247693_atputative protein leucine zipper-containing protein,At5g597306.971.010.0044380.963142Lycopersicon esculentum , PIR: S21495; supported bycDNA: gi_14334437_gb_AY034910.1 —257748_athypothetical protein predicted by genemark.hmmAt3g187106.82−1.160.0090820.446456258351_athypothetical protein contains similarity to ionAt3g177006.78−1.020.0043860.920019channel protein from [ Arabidopsis thaliana ];supported by cDNA:gi_8131897_gb_AF148541.1_AF148541251745_atputative protein zinc finger transcription factorAt3g559806.71−1.360.0013930.169064(PEI1), Arabidopsis thaliana , EMBL: AF050463;supported by cDNA:gi_15810486_gb_AY056282.1 —257536_atunknown proteinAt3g028006.461.240.0111720.244827246108_atputative protein retinal glutamic acid-rich protein,At5g286306.43−1.140.0178010.374617bovine, PIR: A40437; supported by full-length cDNA:Ceres: 24151.256046_atunknown proteinAt1g071356.42−1.280.0052870.339032258436_atputative RING zinc finger protein similar to RING-At3g167206.39−1.20.0025250.290143H2 zinc finger protein ATL6 GB: AAD33584 from[ Arabidopsis thaliana ]; supported by full-lengthcDNA: Ceres: 4581.254255_atserine/threonine kinase-like proteinAt4g232206.391.580.011570.225448serine/threonine kinase, Brassica oleracea ; supportedby cDNA:gi_14423417_gb_AF386946.1_AF386946248686_at33 kDa secretory protein-like; supported by cDNA:At5g485406.371.070.0073020.530534gi_15292980_gb_AY050924.1 —248726_atRAS superfamily GTP-binding protein-like;At5g479606.34−10.0115050.996984supported by cDNA:gi_12004622_gb_AF218121.1_AF218121256633_atunknown proteinAt3g283406.32−1.230.0133140.277616256183_atMAP kinase kinase 4 (ATMKK4) identical to MAPAt1g516606.321.030.0012550.842274kinase kinase 4 [ Arabidopsis thaliana ]; supported bycDNA: gi_13265419_gb_AF324667.2_AF324667247949_atcytochrome P450At5g572206.31−1.030.007980.740555250098_atputative protein; supported by full-length cDNA:At5g173506.21−1.090.0056230.628534Ceres: 1198.255504_atdrought-induced-19-like 1 similar to drought-At4g022006.141.10.0029020.428306induced-19, GenBank accession number X78584similar to F2P16.10, GenBank accession number2191179 identical to T10M13.20253414_atputative proteinAt4g330506.08−1.10.0020730.284317262731_athypothetical protein similar to gb|AF098458 latex-At1g164206.071.180.0165280.727417abundant protein (LAR) from Hevea brasiliensis247848_atresistance protein-like disease resistance proteinAt5g581206.07−1.040.012950.876046RPP1-WsA, Arabidopsis thaliana , EMBL: AF098962254926_atACC synthase (AtACS-6); supported by cDNA:At4g112806.04−1.170.0051230.161176gi_16226285_gb_AF428292.1_AF428292249719_atExpressed protein; supported by full-length cDNA:At5g357356.04−1.080.0050810.233393Ceres: 32450.247208_atnodulin-like; supported by full-length cDNA:At5g648706.041.220.0016050.225756Ceres: 142026.257478_athypothetical protein similar to putativeAt1g161305.96−1.230.0089180.562604serine/threonine-specific protein kinase GI: 7270012from [ Arabidopsis thaliana ]246993_atCys2/His2-type zinc finger protein 1At5g674505.95−1.060.0052990.855156(dbj|BAA85108.1)252060_atputative protein other hypothetical proteins inAt3g524305.941.20.0050730.34486Arabidopsis thaliana ; supported by cDNA:gi_6457330_gb_AF188329.1_AF188329267381_atunknown protein; supported by cDNA:At2g261905.9−1.090.0065280.587987gi_16930468_gb_AF419588.1_AF419588245038_atsimilar to latex allergen from Hevea brasiliensis ;At2g265605.89−1.060.0193740.83179supported by full-length cDNA: Ceres: 1999.266800_athypothetical protein predicted by genefinderAt2g228805.86−1.010.0033360.993661259211_atunknown protein identical to GB: AAD56318At3g090205.821.080.006490.5476( Arabidopsis thaliana )253485_atExpressed protein; supported by full-length cDNA:At4g318005.82−1.130.004940.428126Ceres: 40692.260211_athypothetical protein similar to YGL010w-likeAt1g744405.771.060.0033510.730279protein GB: AAC32136 [ Picea mariana ]256093_atpredicted protein; supported by cDNA:At1g208235.74−1.350.0160680.107243gi_15027984_gb_AY045849.1 —267451_atputative AP2 domain transcription factorAt2g337105.72−1.170.0153340.725714260411_athypothetical protein similar to GB: AAB61488At1g698905.71−1.290.0112040.168552[ Arabidopsis thaliana ]; supported by full-lengthcDNA: Ceres: 34864.254592_atheat shock transcription factor-like protein heatAt4g188805.7−1.080.0098290.552909shock transcription factor, Zea mays , PIR2: S61448264000_atputative mitochondrial dicarboxylate carrier protein;At2g225005.68−1.180.0049640.182153supported by full-length cDNA: Ceres: 20723.263475_atExpressed protein; supported by full-length cDNA:At2g319455.6310.006550.971652Ceres: 258917.254408_atserine/threonine kinase-like protein serine/threonineAt4g213905.631.20.0034770.605633kinase BRLK, Brassica oleracea , gb: Y12531245209_atputative protein similarity to predicted protein,At5g123405.63−1.230.0040770.532051Arabidopsis thaliana259629_atdisease resistance protein contains domainsAt1g565105.61−1.130.0095830.608416associated with disease resistance genes in plants:TIR/NB-ARC/LRR247655_atzinc finger protein Zat12; supported by full-lengthAt5g598205.561.20.0043350.099425cDNA: Ceres: 40576.266834_s_atputative protein phosphatase 2CAt2g300205.52−1.030.0057780.730603256181_atlight repressible receptor protein kinase, putativeAt1g518205.51−1.080.0023650.605128similar to light repressible receptor protein kinaseGI: 1321686 from ( Arabidopsis thaliana )251705_atDNA-binding protein-like DNA-binding protein 4At3g564005.5−1.030.006670.83389WRKY4- Nicotiana tabacum ,EMBL: AF193771; supported by full-length cDNA:Ceres: 34847.251097_atreceptor like protein kinase receptor like proteinAt5g015605.48−1.090.009450.858858kinase- Arabidopsis thaliana , EMBL: ATLECGENE248392_atintegral membrane protein-likeAt5g520505.45−1.210.0051620.477438254158_atputative protein dihydrofolate reductase-At4g243805.44−1.170.0133470.342417Schizosaccharomycespombe, PID: e1320950; supported by full-lengthcDNA: Ceres: 27155.260406_atputative glutathione transferase similar to glutathioneAt1g699205.412.070.0096350.082596transferase GB: CAA09188 [ Alopecurusmyosuroides ]254241_atserine/threonine kinase-like protein serine/threonineAt4g231905.371.090.0018020.566443kinase, Brassica oleracea265674_atunknown protein; supported by full-length cDNA:At2g321905.31.240.0133330.440285Ceres: 40344.264757_atreceptor protein kinase (IRK1), putative similar toAt1g613605.28−1.050.0021660.73136receptor protein kinase (IRK1) GI: 836953 from[ Ipomoea trifida ]248875_atdisease resistance protein-likeAt5g464705.28−1.010.0049990.943089247708_atputative protein COP1-interacting protein CIP8,At5g595505.28−1.210.0038610.156044Arabidopsis thaliana , EMBL: AF162150; supportedby cDNA: gi_15450686_gb_AY052711.1 —260239_atputative receptor protein kinase similar toAt1g743605.261.270.0141650.212238brassinosteroid insensitive 1 GB: AAC49810(putative receptor protein kinase); contains Pfamprofiles: PF00560 Leucine Rich Repeat (17 repeats),PF00069 Eukaryotic protein kinase domain;supported by cDNA: gi_158255549_atpredicted protein of unknown functionAt4g019505.23−1.020.0097290.893458266992_atsimilar to Mlo proteins from H. vulgare ; supportedAt2g392005.21−1.120.0081010.282992by cDNA:gi_14091593_gb_AF369573.1_AF369573261973_athypothetical protein predicted by genemark.hmmAt1g646105.19−1.090.0057860.674167254242_atserine/threonine kinase-like protein serine/At4g232005.191.030.0078820.840853threonine kinase, Brassica oleracea260477_atSer/Thr protein kinase isologAt1g110505.15−1.340.0291350.243484265670_s_atunknown protein; supported by full-length cDNA:At2g322105.071.190.0146820.138268Ceres: 31665.265199_s_atputative glucosyl transferaseAt2g367705.071.330.0037710.194926247493_atcopine-like protein copine I, Homo sapiens ,At5g619005.071.040.0030770.714944EMBL: HSU83246; supported by full-length cDNA:Ceres: 146738.265737_atputative phosphatidic acid phosphatase; supportedAt2g011805.04−1.050.003820.74519by full-length cDNA: Ceres: 19163.260243_athypothetical protein similar to putative proteinAt1g637205.011.070.0196390.772243GB: CAA18164 [ Arabidopsis thaliana ]; supported bycDNA: gi_13878144_gb_AF370335.1_AF370335252045_atputative protein arm repeat containing protein ARC1-At3g524505.011.250.0120910.125673Brassica napus , PID: g2558938250153_atputative protein TMV response-related gene product,At5g1513051.050.0116890.809857Nicotiana tabacum , EMBL: AB024510247047_atputative protein contains similarity to unknownAt5g666504.98−1.010.0066470.888192protein (gb AAC17084.1); supported by cDNA:gi_14596230_gb_AY042903.1 —261476_athypothetical protein contains similarity to alpha-At1g144804.971.140.027890.562278latroinsectotoxin precursor GI: 9537 from[ Latrodectus tredecimguttatus ]247205_atunknown protein; supported by full-length cDNA:At5g648904.961.590.0105320.389292Ceres: 9242.261450_s_atO-methyltransferase, putative similar toAt1g211104.951.50.022030.137219GB: AAF28353 from [ Fragaria x ananassa ]252474_atputative protein several hypothetical proteins-At3g466204.94−1.060.0066330.705845Arabidopsis thaliana257840_atprotein kinase, putative contains Pfam profile:At3g252504.931.190.0138240.496857PF00069 Eukaryotic protein kinase domain248964_atcytochrome P450At5g453404.93−1.520.0038150.013613247071_atputative protein similar to unknown protein (embAt5g666404.92−1.020.0105590.987089CAB16816.1)246270_atputative proteinAt4g365004.92−1.20.0028230.230335261033_atunknown protein; supported by full-length cDNA:At1g173804.84−1.010.0176430.96188Ceres: 37370.260261_atunknown proteinAt1g684504.78−1.030.0069460.882923249485_atreceptor protein kinase-like protein receptor-proteinAt5g390204.741.030.0022680.823569kinase-like protein, Arabidopsis thaliana ,PIR: T45786256487_atdisease resistance gene, putative similar to downyAt1g315404.731.140.011070.679977mildew resistance protein RPP5 [ Arabidopsisthaliana ] GI: 6449046249983_atputative protein S-receptor kinase PK3 precursor,At5g184704.691.030.0060210.801393maize, PIR: T02753; supported by full-length cDNA:Ceres: 154037.258682_atputative ribosomal-protein S6 kinase (ATPK19)At3g087204.681.120.0094640.260404identical to putative ribosomal-protein S6 kinase(ATPK19) GB: D42061 [ Arabidopsis thaliana ](FEBS Lett. 358 (2), 199-204 (1995)); supported bycDNA: gi_15292784_gb_AY050826.1 —254487_atcalcium-binding protein-like calcium-bindingAt4g207804.63−1.430.0150220.176224protein, Solanum tuberosum , gb: L02830265728_athypothetical protein predicted by genscanAt2g319904.62−1.140.0258760.616683258792_athypothetical protein predicted byAt3g046404.62−1.080.0038090.521094genefinder; supported by full-length cDNA:Ceres: 8992.253535_atputaive DNA-binding protein DNA-binding proteinAt4g315504.62−1.170.0016160.072643WRKY3- Petroselinum crispum ,PIR2: S72445; supported by full-length cDNA:Ceres: 11953.257751_athypothetical protein predicted byAt3g186904.6−1.010.0061950.939184genemark.hmm; supported by full-length cDNA:Ceres: 104278.261367_atprotein kinase, putative similar to many predictedAt1g530804.591.310.0087230.439817protein kinases247240_atputative protein strong similarity to unknown proteinAt5g646604.57−1.080.0041910.392312(emb|CAB89350.1)261526_atprotein kinase identical to protein kinase GI: 2852447At1g143704.56−1.080.0047580.475696from [ Arabidopsis thaliana ]; supported by cDNA:gi_2852446_dbj_D88206.1_D88206254948_atputative protein various predicted proteins,At4g110004.551.030.0206740.901116Arabidopsis thaliana245119_atunknown protein; supported by cDNA:At2g416404.54−1.20.0135280.323955gi_16930450_gb_AF419579.1_AF419579248319_atunknown proteinAt5g527104.5−1.190.0226460.498394245765_athypothetical protein similar to putative diseaseAt1g336004.5−1.010.007530.943437resistance protein GB: AAC14512 GI: 2739389 from[ Arabidopsis thaliana ]248821_atprotein serine threonine kinase-likeAt5g470704.491.130.0058070.220356245272_athypothetical protein; supported by cDNA:At4g172504.49−10.0164470.969266gi_16323154_gb_AY057681.1 —255595_atputative chitinase similar to peanut type II chitinase,At4g017004.481.090.0092320.455046GenBank accession number X82329, E.C. 3.2.1.14249918_atputative protein predicted protein, ArabidopsisAt5g192404.481.110.0056050.490746thaliana263565_atunknown proteinAt2g153904.45−1.280.0112980.375612261713_atprotein kinase, putative identical to bHLH proteinAt1g326404.431.120.0020070.392042GB: CAA67885 GI: 1465368 from [ Arabidopsisthaliana ]; supported by cDNA:gi_14335047_gb_AY037203.1 —262772_atpuative calcium-transporting ATPase similar toAt1g132104.4−1.060.0041920.641809gb|AF038007 FIC1 gene from Homo sapiens and is amember of the PF|00122 E1-E2 ATPase family.ESTs gb|T45045 and gb|AA394473 come from thisgene258364_atunknown proteinAt3g142254.4−1.490.0131950.305266257022_atzinc finger protein, putative similar to Cys2/His2-At3g195804.39−1.040.010730.818188type zinc finger protein 2 GB: BAA85107 from[ Arabidopsis thaliana ]; supported by cDNA:gi_15028256_gb_AY046043.1 —252053_atsyntaxin-like protein synt4; supported by full-lengthAt3g524004.381.020.0028660.837782cDNA: Ceres: 37248.250695_atlectin-like protein kinaseAt5g067404.38−1.340.0305430.436678246293_atSigA binding protein; supported by cDNA:At3g567104.38−1.010.0054880.98387gi_14596086_gb_AY042831.1 —249032_atputative protein contains similarity to diseaseAt5g449104.371.060.0109210.589391resistance protein265189_atunknown protein; supported by cDNA:At1g238404.341.120.0201180.585186gi_14335017_gb_AY037188.1 —265668_atputative alanine acetyl transferase; supported byAt2g320204.311.450.0066270.053107full-length cDNA: Ceres: 21201.264232_atputative protein kinase Pfam HMM hit: EukaryoticAt1g674704.3−1.070.0039610.651045protein kinase domain; identical to GB: AAC18787( Arabidopsis thaliana )263948_atsimilar to harpin-induced protein hin1 from tobacco;At2g359804.281.340.0077350.319605supported by full-length cDNA: Ceres: 26418.261748_athypothetical protein predicted byAt1g760704.27−1.050.0349030.781675genemark.hmm; supported by full-length cDNA:Ceres: 39494.252278_atNAC2-like protein NAC2- Arabidopsis thaliana ,At3g495304.25−1.010.0012870.915747EMBL: AF201456; supported by cDNA:gi_16604578_gb_AY059734.1 —247137_atcalcium-dependent protein kinase; supported byAt5g662104.23−1.010.0044740.902625full-length cDNA: Ceres: 18901.255568_atputative DNA-binding protein; supported byAt4g012504.21−1.20.0104950.218487cDNA: gi_15028172_gb_AY045909.1 —259479_atExpressed protein; supported by full-length cDNA:At1g190204.21.230.0027070.175614Ceres: 31015.245247_atscarecrow-like 13 (SCL13); supported by cDNA:At4g172304.21.060.0105330.625637gi_16930432_gb_AF419570.1_AF419570252470_atprotein kinase 6-like protein protein kinase 6-At3g469304.191.130.0128750.362838Glycine max, PIR2: S29851256050_atleucine zipper protein, putative similar to leucineAt1g070004.161.040.0182980.855313zipper protein GI: 10177020 from [ Arabidopsisthaliana ]261405_atunknown protein; supported by full-length cDNA:At1g187404.15−1.110.009510.382476Ceres: 40753.267288_atsimilar to cold acclimation protein WCOR413At2g236804.121.060.0263030.758149[ Triticum aestivum ]252592_atmitogen-activated protein kinase 3; supported byAt3g456404.12−1.150.0048070.119458cDNA: gi_14423447_gb_AF386961.1_AF386961247125_atputative protein contains similarity to unknownAt5g660704.1110.0012390.979764protein (gb|AAF18680.1)265184_atunknown protein; supported by full-length cDNA:At1g237104.09−1.180.0144970.24269Ceres: 36437.247773_atputative proteinAt5g586304.09−1.080.0061760.825067263478_atputative receptor-like protein kinase; supported byAt2g318804.081.140.006240.158364cDNA: gi_16648754_gb_AY058153.1 —251910_atserine/threonine-specific kinase like proteinAt3g538104.05−1.020.0028690.843094serine/threonine-specific kinase (EC 2.7.1.—)precursor- Arabidopsis thaliana , PIR: S68589245662_athypothetical protein predicted by genemark.hmmAt1g281904.04−1.230.03280.44426259997_atunknown protein similar to N-At1g678804.0310.0057670.973619acetylglucosaminyltransferase III GB: AAC53064[ Mus musculus ]252179_atputative protein UDP-glucose: (glucosyl) LPSAt3g507604.03−1.040.003040.802486alpha1,3-glucosyltransferase WaaO, E. coli ,EMBL: AF019746252928_atputative protein more than 30 predicted proteins,At4g389404.011.070.0007290.325455Arabidopsis ; supported by full-length cDNA:Ceres: 40069.251832_atputative protein tomato leucine zipper-containingAt3g551504.011.410.0102570.134388protein, Lycopersicon esculentum , PIR: S21495266396_atunknown proteinAt2g3879041.050.0273950.850892259400_atreceptor-like protein kinase, putative similar toAt1g177503.97−1.020.0422520.932069receptor-like protein kinase INRPK1 GI: 1684913from [ Ipomoea nil ]255654_atSimilar to receptor kinaseAt4g009703.97−1.110.0108380.737951254587_atresistance protein RPP5-like downy mildewAt4g195203.97−1.050.007680.89806resistance protein RPP5, Arabidopsis thaliana ,PATX: G2109275255753_atmyb factor, putative similar to myb factorAt1g185703.951.030.0044240.830522GI: 1946266 from [ Oryza sativa ]; supported bycDNA: gi_3941465_gb_AF062887.1_AF062887246532_atputative protein beta-glucan-elicitor receptor-At5g158703.94−1.020.0158410.913394Glycine max , EMBL: D78510246631_atunknown protein; supported by full-length cDNA:At1g507403.931.040.0068410.56351Ceres: 34587.252533_atputative protein predicted proteins, ArabidopsisAt3g461103.91.020.0171850.893955thaliana267384_atunknown protein highly similar toAt2g443703.881.080.0050160.736235GP|2435515|AF024504258650_atputative protein kinase similar to protein kinaseAt3g098303.881.110.0129360.571912(APK1A) GB: Q06548 [ Arabidopsis thaliana ];contains Pfam profile: PF00069 Eukaryotic proteinkinase domain249339_atputative protein similar to unknown proteinAt5g411003.88−1.050.0040610.72083(gb|AAB80666.1)248794_atethylene responsive element binding factor 2At5g472203.87−1.230.0111560.098663(ATERF2) (sp|O80338); supported by full-lengthcDNA: Ceres: 3012.245457_s_atdisease resistance RPP5 like proteinAt4g169603.861.180.0102590.375561248316_atputative protein similar to unknown proteinAt5g526703.84−1.030.0063340.875191(emb|CAA71173.1)253046_atcytochrome P450-like protein cytochrome P450,At4g373703.832.170.0192610.016853Glycyrrhiza echinata , AB001379; supported by full-length cDNA: Ceres: 253698.262374_s_atflax rust resistance protein, putative similar to flaxAt1g729303.811.030.0044060.567071rust resistance protein GI: 4588066 from [ Linumusitatissimum ];supported by full-length cDNA:Ceres: 2795.258537_atputative disease resistance protein similar to diseaseAt3g042103.811.090.0059410.472196resistance protein RPP1-WsC GB: AAC72979[ Arabidopsis thaliana ]; supported by cDNA:gi_15982829_gb_AY057522.1 —252648_atdisease resistance protein homolog diseaseAt3g446303.81−1.230.0071770.068548resistance protein RPP1-WsB- Arabidopsis thaliana ,EMBL: AF098963247913_atunknown proteinAt5g575103.811.120.0094760.608703267411_atputative disease resistance proteinAt2g349303.8−1.060.0151510.825604265440_atpEARLI 4 protein Same as GB: L43081; supportedAt2g209603.8−1.080.0019680.382136by cDNA: gi_871781_gb_L43081.1_ATHPEARA245252_atethylene responsive element binding factor 1At4g175003.8−1.470.0080580.087956(frameshift !); supported by cDNA:gi_3434966_dbj_AB008103.1_AB008103259033_atputative pectinacetylesterase similar toAt3g094103.791.640.0037960.052828pectinacetylesterase precursor GB: CAA67728[ Vigna radiata ]246233_atputative proteinAt4g365503.79−1.430.0287550.228285255599_atcyclic nucleotide gated channel (CNGC4) likeAt4g010103.78−1.020.006060.91649protein Arabidopsis thaliana cyclic nucleotide gatedchannel (CNGC4), PID: g4378659262901_athypothetical protein predicted by genemark.hmmAt1g599103.77−1.080.0062940.540378259952_atputative disease resistance protein similar to Cf-4At1g714003.741.080.0013930.408545GB: CAA05268 from ( Lycopersicon hirsutum )246858_atreceptor-like protein kinase-like receptor-likeAt5g259303.731.020.0157860.964753protein kinase 5, Arabidopsis thaliana , PIR: S27756250435_atputative protein various predicted proteins,At5g103803.721.220.0078560.106321Arabidopsis thaliana261650_atenvelope Ca2+-ATPase identical to envelope Ca2+-At1g277703.711.050.008390.580228ATPase GB: AAD10212 GI: 516118 from( Arabidopsis thaliana ); supported by cDNA:gi_493621_dbj_D13983.1_ATHRCECAA252906_atputative gamma-glutamyltransferase gamma-At4g396403.711.070.0123550.562612glutamyltransferase, Arabidopsis thaliana ,PIR2: S58286251636_atcalcium-dependent protein kinase calcium-At3g575303.71−1.260.0167220.11982dependent protein kinase- Fragaria x ananassa ,EMBL: AF035944247426_atputative protein contains similarity to calmodulin-At5g625703.671.020.0188020.878551binding protein266685_athypothetical proteinAt2g197103.66−10.0184870.952139249903_atdisease resistance protein-likeAt5g226903.65−1.040.0106350.754135247925_atTCH4 protein (gb|AAA92363.1); supported byAt5g575603.65−1.280.0030030.132214cDNA: gi_14194112_gb_AF367262.1_AF367262248611_atputative protein contains similarity to WRKY-typeAt5g495203.63−1.450.0109660.13904DNA-binding protein265221_s_atputative glutamate decarboxylase; supported byAt2g020103.62−1.120.017270.698419cDNA: gi_13605709_gb_AF361836.1_AF361836259792_atunknown protein; supported by cDNA:At1g296903.62−1.050.0139530.685925gi_15809819_gb_AY054177.1 —256576_atzinc finger protein (PMZ), putative identical toAt3g282103.621.340.0195140.107277putative zinc finger protein (PMZ) GB: AAD37511GI: 5006473 [ Arabidopsis thaliana ]254784_atgrowth factor like protein antisense basic fibroblastAt4g127203.621.060.0129040.638871growth factor GFG- Rattus norvegicus ,PID: g1518635; supported by full-length cDNA:Ceres: 148575.247177_atunknown protein; supported by cDNA:At5g653003.621.10.0048630.387978gi_13877834_gb_AF370180.1_AF370180245226_atgene_id: K17E7.15~unknown proteinAt3g299703.61.760.010170.066452256756_atATPase II, putative similar to GB: AAD34706 fromAt3g256103.59−1.010.0092550.929097[ Homo sapiens ] (Biochem. Biophys. Res. Commun.257 (2), 333-339 (1999))253140_atRING-H2 finger protein RHA3b; supported by full-At4g354803.56−1.040.0133910.651703length cDNA: Ceres: 31493.250289_atputative protein; supported by full-length cDNA:At5g131903.561.180.0009660.176346Ceres: 5392.247811_atleucine zipper-containing protein leucine zipper-At5g584303.56−1.010.0013440.933016containing protein, Lycopersicon esculentum ,PIR: S21495261899_atcinnamoyl CoA reductase, putative similar toAt1g808203.55−1.110.015980.720481cinnamoyl CoA reductase GB: AAF43141GI: 7239228 from [ Populus tremuloides ]; supportedby full-length cDNA: Ceres: 32255.245866_s_atunknown proteinAt1g579903.55−1.090.0110560.501011264867_atunknown proteinAt1g241503.53−10.0306430.978236261193_atunknown protein; supported by cDNA:At1g329203.53−1.120.0094890.382199gi_15450636_gb_AY052686.1 —261339_atprotein kinase, putative similar to many predictedAt1g357103.511.320.0131950.062019protein kinases267490_atputative receptor-like protein kinaseAt2g191303.510.0157020.997521259561_athypothetical protein; supported by cDNA:At1g212503.491.520.0051510.042781gi_14532585_gb_AY039917.1 —263228_atputative reticuline oxidase-like protein similar toAt1g307003.481.070.0078230.648304GB: P30986 from [ Eschscholzia californica ](berberine bridge-forming enzyme), ESTsgb|F19886, gb|Z30784 and gb|Z30785 come fromthis gene; supported by cDNA:gi_16930506_gb_AF419607.1_AF419607255627_atExpressed protein; supported by full-length cDNA:At4g009553.481.080.0092060.72176Ceres: 93818.254256_atserine/threonine kinase-like protein serine/threonineAt4g231803.45−1.20.0029190.140829kinase, Brassica oleracea ; supported by cDNA:gi_13506744_gb_AF224705.1_AF224705260135_atcalmodulin-related protein similar to GB: P25070At1g664003.44−1.110.0138830.371779from [ Arabidopsis thaliana ], contains Pfam profile:PF00036 EF hand (4 copies); supported by full-length cDNA: Ceres: 95959.260206_atputative protein kinase contains Pfam profile:At1g707403.43−1.120.0123290.420329PF00069 Eukaryotic protein kinase domain259887_atputative protein kinase similar to protein kinaseAt1g763603.421.10.0089750.501823(APK1A); contains Pfam profile: PF00069Eukaryotic protein kinase domain262383_atdisease resistance protein, putative similar to diseaseAt1g729403.411.180.0119420.230832resistance protein GI: 9758876 from [ Arabidopsisthaliana ]256177_atprotein kinase, putative contains Pfam profile:At1g516203.411.230.014440.359679PF00069: Eukaryotic protein kinase domain245777_atunknown protein contains similarity toAt1g735403.41−1.250.0264870.341823diphosphoinositol polyphosphate phosphohydrolaseGI: 3978224 from [ Homo sapiens ]249221_atserine/threonine protein kinase-like proteinAt5g424403.4−1.020.0052950.883947245448_atdisease resistance RPP5 like proteinAt4g168603.4−1.150.0279850.375642254869_atprotein kinase-like protein KI domain interactingAt4g118903.372.120.0076650.003284kinase 1- Zea mays , PIR2: T02053256755_atcalmodulin, putative similar to GB: P07463 fromAt3g256003.37−1.050.0072840.663209[ Paramecium tetraurelia ] (Cell 62 (1), 165-174(1990))264107_s_atputative receptor-like protein kinaseAt2g137903.341.160.0081310.293891266017_atunknown protein; supported by cDNA:At2g186903.321.360.0085270.108178gi_14517479_gb_AY039575.1 —263776_s_atputative cyclic nucleotide-regulated ion channelAt2g464403.321.210.0264650.278033protein245193_atF12A21.6 hypothetical proteinAt1g678103.321.170.006130.205789256522_atunknown protein; supported by full-length cDNA:At1g661603.3−1.220.0040730.074994Ceres: 35218.248703_atdermal glycoprotein precursor, extracellular-likeAt5g484303.281.090.0050010.574329260434_athypothetical protein predicted by genscan+At1g683303.27−1.140.0061280.614427252652_atputative chloroplast prephenate dehydratase similarAt3g447203.231.080.0047590.192206to bacterial PheA gene products260023_atunknown proteinAt1g300403.211.260.0043540.301041251640_atputative protein; supported by full-length cDNA:At3g574503.21−1.030.0027240.717428Ceres: 12522.264314_atunknown protein; supported by cDNA:At1g704203.181.240.009260.33473gi_15010575_gb_AY045589.1 —262549_athypothetical protein similar to hypothetical proteinAt1g312903.181.360.0173420.141779GB: AAF24586 GI: 6692121 from [ Arabidopsisthaliana ]261459_atO-methyltransferase, putative similar toAt1g211003.181.370.0065040.199125GB: AAF28353 from [ Fragaria x ananassa ];supported by cDNA:gi_15982843_gb_AY057529.1 —249139_atCys2/His2-type zinc finger protein 3At5g431703.18−1.110.0146190.403291(dbj|BAA85109.1); supported by full-length cDNA:Ceres: 9878.248980_atputative protein similar to unknown proteinAt5g450903.18−1.030.0065720.837241(pir||T04765)264660_atputative glutamyl-tRNA reductase 2 precursorAt1g099403.17−1.020.0093510.857849similar to GB: P49294 and to A. thaliana HEMA2(gb|U27118)254014_atNPR1 like protein regulatory protein NPR1-At4g261203.171.030.0211130.898299Arabidopsis thaliana , PID: g1773295252126_atputative disease resistance proteinAt3g509503.171.080.005170.256863262228_atprotein kinase, putative similar to protein kinase 1At1g686903.161.180.0187540.421396GB: BAA94509 GI: 7573596 from [ Populus nigra ];supported by cDNA:gi_14334805_gb_AY035076.1 —259626_atbZIP transcription factor, putative contains PfamAt1g429903.151.080.0060310.361959profile: PF00170: bZIP transcription factor;supported by cDNA:gi_15028322_gb_AY045964.1 —254063_atreceptor kinase-like protein receptor-like proteinAt4g253903.15−1.090.0212740.509081kinase, RLK3- Arabidopsis thaliana , PID: e1363211259443_atchitinase, putative similar to chitinase GI: 1237025At1g023603.141.330.0107570.097826from [ Arachis hypogaea ]266615_s_atputative monooxygenase; supported by full-lengthAt2g297203.13−10.0060730.993995cDNA: Ceres: 34214.251507_atputative protein CND41, chloroplast nucleoid DNAAt3g590803.13−1.260.0192460.076416binding protein- Nicotiana tabacum ,EMBL: D26015; supported by cDNA:gi_15983375_gb_AF424562.1_AF424562246870_atferrochelatase-IAt5g260303.12−1.030.0079710.563075261063_attranscription factor scarecrow-like 14, putativeAt1g075203.091.050.00410.648222similar to GB: AAD24412 from [ Arabidopsisthaliana ] (Plant J. 18 (1), 111-119 (1999))260296_atputative disease resistance protein similar to diseaseAt1g637503.07−1.240.0359950.346342resistance protein (RPP1-WsC) GB: AAC72979[ Arabidopsis thaliana ]248868_atputative protein similar to unknown proteinAt5g467803.071.080.0128410.668687(gb|AAC61815.1); supported by full-length cDNA:Ceres: 254442.267069_atunknown proteinAt2g410103.06−10.0229320.942266261143_atunknown proteinAt1g197703.06−1.070.0030120.469481255116_atreceptor protein kinase-like protein receptor proteinAt4g088503.061.130.0130350.33618kinase-like protein- Arabidopsis thaliana ,PIR2: T05898253284_atputative protein hydroxyproline-rich glycoproteinAt4g341503.051.010.0046150.829133precursor, Nicotiana tabacum , PIR2: S06733;supported by cDNA:gi_15724315_gb_AF412098.1_AF412098252903_atputative protein various predicted proteins,At4g395703.05−1.050.0054670.697229Arabidopsis thaliana254847_atputative phospholipase D-gamma phospholipase D-At4g118503.04−1.010.0145230.911568gamma- Arabidopsis thaliana , PID: g2653885;supported by cDNA:gi_2653884_gb_AF027408.1_AF027408251937_atputative protein predicted protein, ArabidopsisAt3g534003.041.040.0358060.858509thaliana256366_atprotein kinase, putative contains Pfam profile:At1g668803.031.120.0027010.411044PF00069: Eukaryotic protein kinase domain247393_atunknown proteinAt5g631303.03−1.650.0183980.063566260556_atputative endochitinaseAt2g436203.021.320.0034550.0287259445_atdioxygenase, putative similar to dioxygenaseAt1g024003.011.160.0121220.130623GI: 1666096 from [ Marah macrocarpus ]259298_atputative disease resistance protein similar to Cf-2At3g053703.01−1.080.0404440.621247disease resistance protein GB: AAC15780 from[ Lycopersicon pimpinellifolium ]257644_atunknown protein; supported by full-length cDNA:At3g257803.011.190.0227720.336306Ceres: 3457.253628_atxyloglucan endo-1,4-beta-D-glucanase-like proteinAt4g302803.011.290.0058420.110446xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.—)XTR-3- Arabidopsisthaliana , PIR2: S71222; supported by full-lengthcDNA: Ceres: 142204.249072_atputative protein similar to unknown proteinAt5g440603.011.080.0076980.56653(gb|AAD10670.1)253257_atextra-large G-protein-like extra-large G-protein,At4g343903−1.060.0043330.352585Arabidopsis thaliana , AF060942253124_atputative protein unknown protein ArabidopsisAt4g360303−1.070.0169930.706449thaliana , PATX: E248475250676_atharpin-induced protein-like; supported by cDNA:At5g0632031.020.0037720.798472gi_9502175_gb_AF264699.1_AF264699266037_atputative protein kinase contains a protein kinaseAt2g059402.991.030.0118950.742301domain profile (PDOC00100); supported by cDNA:gi_15810412_gb_AY056245.1 —254314_atextensin-like protein hybrid proline-rich protein,At4g224702.98−1.040.0136770.797081Zea mays , PIR2: JQ1663252825_atsmall GTP-binding protein-like SR1 Nt-rab6,At4g398902.971.250.0142690.471148Nicotiana tabacum , L29273; supported by cDNA:gi_14423429_gb_AF386952.1_AF386952260401_atunknown protein similar to hypothetical proteinAt1g698402.961.190.0130160.197702GB: CAA10289 [ Cicer arietinum ]250821_atputative protein similar to unknown proteinAt5g051902.95−1.110.0088010.532383(emb|CAB88044.1)245265_athypothetical protein; supported by cDNA:At4g144002.951.340.0467740.092249gi_15810232_gb_AY056155.1 —264289_athypothetical protein similar to hypothetical proteinAt1g618902.941.170.0167350.217477GI: 2894569 from [ Arabidopsis thaliana ]; supportedby cDNA: gi_15028186_gb_AY045916.1 —259410_athypothetical protein predicted by genemark.hmmAt1g133402.941.450.0150020.097363253958_atputative protein RING zinc finger protein, GallusAt4g264002.941.060.0026190.621194gallus249078_atphytochelatin synthase (gb|AAD41794.1);At5g440702.94−1.020.0080330.806261supported by cDNA:gi_14532653_gb_AY039951.1 —267293_athypothetical proteinAt2g238102.93−1.060.0046370.578539259992_atputative heat shock transcription factor containsAt1g679702.93−1.010.0060510.910383Pfam profile: PF00447 HSF-type DNA-bindingdomain; N-terminal portion similar to heat shocktranscription factor proteins: GB: CAA74397[ Arabidopsis thaliana ], GB: S25478 [ Lycopersiconesculentum ]252862_atputative L-ascorbate oxidase L-ascorbate oxidase,At4g398302.931.130.0097560.383415Cucumis sativus , PIR1: KSKVAO249550_atprotein kinase-like protein wall-associated kinase 4At5g382102.93−1.130.006760.38925(wak4), Arabidopsis thaliana , EMBL: ATH9695247279_atarabinogalactan-protein (gb|AAC77823.1);At5g643102.93−1.010.006610.937671supported by full-length cDNA: Ceres: 25423.265450_athypothetical protein predicted by genefinderAt2g466202.92−1.030.0149240.733991251479_atserine/threonine-specific kinase lecRK1At3g597002.91−1.080.0087690.515335precursor, lectin receptor-like249418_atputative protein predicted protein, ArabidopsisAt5g397802.911.10.0154580.521455thaliana266247_athypothetical protein predicted by genscanAt2g276602.89−1.110.0096880.350456249252_atputative protein contains similarity to unknownAt5g420102.89−1.050.0140730.747236protein (gb|AAF19687.1)255291_atputative calcium dependent protein kinaseAt4g047002.88−1.040.0234960.890022253747_atserine threonine-specific kinase like protein serineAt4g290502.87−1.090.0114570.626019threonine-specific kinase lecRK1- Arabidopsisthaliana , PIR2: S68589250323_atputative protein hydroxyproline-rich glycoprotein,At5g128802.871.060.0092160.469664kidney bean, PIR: A29356262801_atunknown protein; supported by full-length cDNA:At1g210102.861.080.0176530.443505Ceres: 17521.251061_atputative protein hypothetical protein ARC1-At5g018302.861.180.0157430.623238Brassica napus , PIR: T08872265132_atunknown protein; supported by cDNA:At1g238302.84−1.070.0174670.652241gi_16604403_gb_AY058100.1 —260439_athypothetical protein predicted byAt1g683402.84−1.040.0039170.840841genscan+; supported by full-length cDNA:Ceres: 3385.260227_atunknown protein similar to hypothetical proteinsAt1g744502.83−1.160.0096490.269848GB: AAD39276 [ Arabidopsis thaliana ],GB: CAB53491 [ Oryza sativa ]; supported by full-length cDNA: Ceres: 108193.261453_atO-methyltransferase, putative similar toAt1g211302.82−1.150.0108880.513201GB: AAF28353 from [ Fragaria xananassa ]; supported by full-length cDNA:Ceres: 101583.254432_atreticuline oxidase-like protein reticuline oxidase,At4g208302.821.190.0460620.572211Eschscholzia californica , PIR: A41533; supported bycDNA: gi_15983492_gb_AF424621.1_AF424621253971_atfructose-bisphosphate aldolase-like proteinAt4g265302.82−1.020.0167120.805977fructose-bisphosphate aldolase, Arabidopsis thaliana ,PIR1: ADMU; supported by full-length cDNA:Ceres: 34690.262165_atputative acyl-CoA: 1-acylglycerol-3-phosphateAt1g750202.81−1.130.0102950.275107acyltransferase similar to acyl-CoA: 1-acylglycerol-3-phosphate acyltransferase GB: CAB09138( Brassica napus ); contains Pfam profile: PF01553Acyltransferase; supported by full-length cDNA:Ceres: 115679.258275_atunknown protein; supported by full-length cDNA:At3g157602.81−1.090.0028840.259472Ceres: 8259.255564_s_athypothetical protein T15B16.8At4g017502.811.280.0044740.364426253377_atputative protein NBS/LRR disease resistance proteinAt4g333002.811.030.0087880.64371(RFL1)- Arabidopsis thaliana , PID: g3309619260220_atputative MYB family transcription factor containsAt1g746502.8−1.050.0148010.787419Pfam profile: PF00249 Myb-like DNA-bindingdomain256583_athypothetical proteinAt3g288502.81.080.0098720.39554252193_atR2R3-MYB transcription factor; supported byAt3g500602.8−1.670.0072020.02821cDNA: gi_15983427_gb_AF424588.1_AF424588247509_atheat shock factor 6At5g620202.81.110.0047180.497285246368_atlight repressible receptor protein kinase, putativeAt1g518902.81.320.0070140.17566similar to light repressible receptor protein kinaseGI: 1321686 from [ Arabidopsis thaliana ]259507_atunknown proteinAt1g439102.791.410.0058840.156323251769_atreceptor kinase-like protein receptor kinaseAt3g559502.791.020.0370290.858886homolog CRINKLY4, maize, PIR: T04108250335_atlysophospholipase-like protein lysophospholipaseAt5g116502.781.070.0048530.539031homolog LPL1, Oryza sativa ,EMBL: AF039531; supported by full-length cDNA:Ceres: 15284.248134_atputative protein contains similarity to integralAt5g548602.781.090.0107670.465367membrane protein246988_atputative protein strong similarity to unknown proteinAt5g673402.781.180.018070.609865(pir||T00518)247707_atscarecrow-like 11-like scarecrow-like 11,At5g594502.76−1.060.0280930.649019Arabidopsis thaliana , EMBL: AF036307; supportedby cDNA: gi_14334655_gb_AY035001.1 —256497_atORF1, putative similar to ORF1 GI: 457716 fromAt1g315802.751.390.0048880.080053( Arabidopsis thaliana ); supported by cDNA:gi_16649160_gb_AY059950.1 —264008_atunknown proteinAt2g211202.74−1.010.0030420.876414264716_atmatrix metalloproteinase, putative similar to matrixAt1g701702.73−1.020.0055240.873758metalloproteinase GI: 7159629 from [ Cucumissativus ]261445_atunknown protein; supported by cDNA:At1g283802.73−1.060.021280.701956gi_16604598_gb_AY059744.1 —256968_atunknown proteinAt3g210702.73−1.140.0143150.494381256763_atunknown proteinAt3g168602.73−1.060.010990.724699255605_athypothetical proteinAt4g010902.73−1.180.029410.263496254652_atDNA binding-like protein SPF1 protein, sweetAt4g181702.731.050.0486450.839297protein, PIR2: S51529 and WRKY protein family,Petroselinum crispum , MNOS: S72443,MNOS: S72444, MNOS: S72445247532_atputative protein disease resistance protein kinase Pto,At5g615602.73−1.030.0200530.845513Lycopersiocon esculentum , PIR: A49332264106_atunknown proteinAt2g137802.711.20.0139980.074305265075_athypothetical protein similar to embryo-abundantAt1g554502.7−1.080.0167430.546091protein GB: L47672 GI: 1350530 from [ Picea glauca ];supported by cDNA:gi_14335021_gb_AY037190.1 —256793_atunknown protein; supported by full-length cDNA:At3g221602.69−1.090.0134650.391312Ceres: 8081.258551_athypothetical protein predicted byAt3g068902.68−1.020.0165940.966946genscan+; supported by full-length cDNA:Ceres: 262487.255740_atwall-associated kinase, putative similar to wall-At1g253902.68−1.150.0121390.281008associated kinase 1 GI: 3549626 from [ Arabidopsisthaliana ]; supported by cDNA:gi_15529241_gb_AY052245.1 —246099_atblue copper binding protein; supported by full-At5g202302.671.70.0080610.011289length cDNA: Ceres: 7767.264616_atunknown proteinAt2g177402.6710.0229170.884668254042_atxyloglucan endo-1,4-beta-D-glucanase (XTR-6);At4g258102.661.070.0022880.480301supported by cDNA:gi_1244757_gb_U43488.1_ATU43488246289_atputative protein predicted protein At2g41010-At3g568802.66−1.020.0108840.82618Arabidopsis thaliana ; EMBL: AC004261; supportedby full-length cDNA: Ceres: 39584.266792_atputative sucrose/H+ symporterAt2g028602.651.050.0051940.618209265853_atputative RING zinc finger proteinAt2g423602.641.270.0078750.101121258786_atputative syntaxin contains Pfam profile: PF00804At3g118202.641.160.0055010.095192syntaxin; supported by full-length cDNA:Ceres: 38899.247940_atphosphatidylserine decarboxylaseAt5g571902.64−1.080.021560.742477257083_s_atnon-race specific disease resistance protein, putativeAt3g205902.63−1.10.0223350.571353contains non-consensus CT donor splice site at exon1; potential pseudogene; similar to non-race specificdisease resistance protein GB: AAB95208[ Arabidopsis thaliana ]264434_athypothetical protein predicted by genscan; supportedAt1g103402.611.140.0165380.421888by cDNA:gi_13937239_gb_AF372975.1_AF372975263804_atputative protein kinase contains a protein kinaseAt2g402702.611.020.0028010.766513domain profile (PDOC00100); supported by full-length cDNA: Ceres: 123911.249896_atunknown protein; supported by cDNA:At5g225302.611.120.019750.439704gi_14532613_gb_AY039931.1 —249459_atperoxidase ATP24aAt5g395802.61−1.240.0115370.098646247740_atreceptor-like protein kinase precursor-like receptor-At5g589402.611.110.0133630.45095like protein kinase precursor, Madagascarperiwinkle, PIR: T10060246931_atputative protein apoptosis-related protein PNAS-4,At5g251702.61.010.0030030.89146Homo sapiens , EMBL: AF229834; supported by full-length cDNA: Ceres: 263500.265713_atputative integral membrane proteinAt2g035302.59−1.180.0102840.275593263931_atunknown protein; supported by full-length cDNA:At2g362202.591.040.0323320.640228Ceres: 12251.264834_atunknown protein similar to ESTs gb|AA605440 andAt1g037302.581.020.0060420.863016gb|H37232; supported by full-length cDNA:Ceres: 30716.259852_atdisulfide bond formation protein, putative similar toAt1g722802.581.240.0145980.356183GI: 6642925 from [ Mus musculus ]252539_atputative proteinAt3g457302.581.30.0095080.150314252378_atreceptor kinase-like protein protein kinase Xa21-At3g475702.581.120.023630.435178Oryza sativa , PIR: A57676; supported by cDNA:gi_15810450_gb_AY056264.1 —251684_atputative proteinAt3g564102.571.080.0235610.592162261719_athypothetical protein similar to hypothetical proteinAt1g183802.561.360.0163310.094821GB: AAF25996 GI: 6714300 from [ Arabidopsisthaliana ]254248_atserine/threonine kinase serine/threonine kinase,At4g232702.56−1.040.0061440.687459Brassica oleracea253204_atGTP binding protein beta subunit; supported byAt4g344602.56−1.010.0074110.949586cDNA: gi_15028006_gb_AY045860.1 —249361_atprotein kinase-like protein protein kinase ATN1,At5g405402.55−10.0046470.984046Arabidopsis thaliana , PIR: S61766248665_atExpressed protein; supported by full-length cDNA:At5g486552.551.020.0093590.848153Ceres: 12974.253455_atputative proteinAt4g320202.54−1.010.008250.888496248978_atputative protein contains similarity to diseaseAt5g450702.54−1.050.0301430.671649resistance protein248870_atputative protein similar to unknown proteinAt5g467102.541.030.0045470.48662(pir||T05076); supported by full-length cDNA:Ceres: 42747.252170_athypothetical protein; supported by cDNA:At3g504802.531.090.006470.431092gi_13605735_gb_AF361849.1_AF361849264636_athypothetical protein predicted byAt1g654902.521.040.0199450.653146genemark.hmm; supported by full-length cDNA:Ceres: 2118.264400_atglucose-6-phosphate/phosphate-translocatorAt1g618002.51−1.130.0358530.380949precursor, putative similar to glucose-6-phosphate/phosphate-translocator precursorGI: 2997591 from [ Pisum sativum ]; supported bycDNA: gi_14596172_gb_AY042874.1 —245567_atgermin precursor oxalate oxidaseAt4g146302.51−1.120.0103950.322763264083_atethylene reponse factor-like AP2 domainAt2g312302.5−1.090.0073480.596007transcription factor261220_atER lumen protein-retaining receptor similar toAt1g199702.51.110.012470.321046SP: O44017 from [ Entamoeba histolytica ]259546_atunknown proteinAt1g353502.49−1.020.0096220.86289266101_atunknown protein; supported by cDNA:At2g379402.471.050.0066890.366431gi_16604321_gb_AY058059.1 —262384_atdisease resistance protein, putative similar to diseaseAt1g729502.47−1.070.0170430.63375resistance protein GI: 9758876 from [ Arabidopsisthaliana ]251423_atregulatory protein-like regulatory protein preg,At3g605502.471.040.0054540.86361Neurospora crassa , PIR: S52974259312_atputative RING-H2 zinc finger protein ATL6 similarAt3g052002.46−1.110.0205430.252889to GB: AAD33584 from [ Arabidopsis thaliana ];supported by cDNA:gi_4928402_gb_AF132016.1_AF132016267624_atputative protein kinaseAt2g396602.45−1.10.0153620.313576266230_athypothetical protein predicted by genscan andAt2g288302.451.030.035860.739871genefinder; supported by cDNA:gi_14334729_gb_AY035038.1 —260656_athypothetical protein predicted by genemark.hmmAt1g193802.451.120.0121540.152235253664_atNADPH-ferrihemoprotein reductase (ATR2)At4g302102.451.060.0148930.463357251259_atputative protein phosphoprotein phosphatase (ECAt3g622602.451.090.0085550.4955613.1.3.16) 1A-alpha- Homo sapiens ,PIR: S22423; supported by full-length cDNA:Ceres: 20050.267357_atputative nematode-resistance protein; supported byAt2g400002.441.160.0316180.266241full-length cDNA: Ceres: 35056.254521_atputative protein similar to unknown proteinAt5g448102.44−1.090.0416380.416086(gb|AAC79139.1)263419_atputative protein kinase contains a protein kinaseAt2g172202.431.090.0083410.27009domain profile (PDOC00100); supported by full-length cDNA: Ceres: 13257.253323_atputative protein protein phosphatase Wip1, HomoAt4g339202.43−1.130.0250960.456412sapiens , PID: g2218063; supported by full-lengthcDNA: Ceres: 40123.258983_atputative aminotransferase similar to beta-alanine-At3g088602.421.140.0063310.051755pyruvate aminotransferase GB: BAA19549 [ Rattusnorvegicus ], alanine-glyoxylate aminotransferaseGB: Q64565 [ Rattus norvegicus ]; Pfam HMM hit:Aminotransferases class-III pyridoxal-phosphate249583_atCALMODULIN-RELATED PROTEIN 2, TOUCH-At5g377702.42−1.170.0063050.208762INDUCED (TCH2); supported by full-length cDNA:Ceres: 25475.258046_atMAP kinase kinase 5 identical to GB: BAA28831At3g212202.411.130.0136330.416118from [ Arabidopsis thaliana ]; supported by cDNA:gi_3219272_dbj_AB015316.1_AB015316250990_atserine/threonine-specific protein kinase NAK;At5g022902.41−1.120.0128860.320809supported by full-length cDNA: Ceres: 27477.249423_atExpressed protein; supported by full-length cDNA:At5g397852.41−1.130.0261150.657212Ceres: 118847.248814_atputative protein similar to unknown proteinAt5g469102.4−1.030.0079490.787827(pir||T06699)254204_atputative protein CGI-58 protein- HomoAt4g241602.38−1.040.0105910.590709sapiens , PID: g4929585252485_atdisease resistance protein RPP13-like proteinAt3g465302.37−1.050.0121070.677972disease resistance protein RPP8- Arabidopsisthaliana , EMBL: AF089710; supported by cDNA:gi_14334999_gb_AY037179.1 —265620_atunknown proteinAt2g273102.35−1.20.0492060.345125264756_atreceptor protein kinase (IRK1), putative similar toAt1g613702.35−1.070.0104940.634376receptor protein kinase (IRK1) GI: 836953 from[ Ipomoea trifida ]266993_atnodulin-like protein; supported by cDNA:At2g392102.331.120.0176360.371447gi_16930478_gb_AF419593.1_AF419593256735_athypothetical protein predicted by genemark.hmmAt3g294002.33−1.120.0061920.192654256425_atdisease resistance protein, putative similar to diseaseAt1g335602.331.040.0102060.488005resistance protein RPP1-WsB GB: BAB01321GI: 9279731 from ( Arabidopsis thaliana )250829_atdisease resistance-like protein rpp8, ArabidopsisAt5g047202.33−1.080.0137210.38143thaliana , EMBL: AF089711; supported by cDNA:gi_15292720_gb_AY050794.1 —248698_atreceptor-like protein kinase; supported by cDNA:At5g483802.331.130.0216850.326459gi_13605826_gb_AF367312.1_AF367312247594_atputative protein farnesylated protein GMFP5,At5g608002.331.370.0273820.054007Glycine max , EMBL: U64916266166_atputative glucosyltransferase; supported by full-At2g280802.32−1.050.0184740.764619length cDNA: Ceres: 13761.262745_atlipase, putative contains Pfam profile: PF00657At1g286002.32−1.120.0155450.267784Lipase/Acylhydrolase with GDSL-likemotif; supported by full-length cDNA: Ceres: 37307.257407_atunknown proteinAt1g271002.32−1.190.0098750.068971258282_atunknown proteinAt3g269102.311.140.0032410.168885252373_atdisease resistance protein EDS1; supported byAt3g480902.31−1.070.0119960.442811cDNA: gi_15028150_gb_AY046025.1 —250956_atputative proteinAt5g032102.31−1.020.030920.993512248851_s_atdisease resistance protein-like; supported by cDNA:At5g464902.31.090.0092340.638209gi_16323098_gb_AY057653.1 —254924_atMAP kinase (ATMPK5) possible internal deletionAt4g113302.29−1.140.0104780.330061at position 161, missing one A residue; referenceGI: 457401; supported by cDNA:gi_457401_dbj_D21841.1_ATHATMPK5250279_atABA-responsive protein-like ABA-responsiveAt5g132002.29−1.110.0218530.295383protein, Hordeum vulgare , EMBL: AF026538263221_atUDP-galactose 4-epimerase-like protein similar toAt1g306202.281.230.0151450.343241proteins from many bacterial species including[ Bacillus subtilis ] and [ Methanobacteriumthermoautotrophicum ]261718_atwall-associated kinase, putative similar to wall-At1g183902.281.070.0086350.505026associated kinase 2 GB: CAB42872 GI: 4826399from [ Arabidopsis thaliana ]250398_atputative protein predicted proteins, ArabidopsisAt5g110002.281.160.0120150.299864thaliana ; supported by full-length cDNA:Ceres: 263168.256922_athypothetical protein contains similarity to flavonolAt3g190102.27−1.040.0294880.80973synthase (FLS) GB: Q41452 from [ Solanumtuberosum ], contains Pfam profile: PF00671Iron/Ascorbate oxidoreductase family; supported byfull-length cDNA: Ceres: 41506.267530_atputative receptor-like protein kinaseAt2g418902.26−1.110.0283110.389366256627_atunknown protein; supported by cDNA:At3g199702.261.050.0152380.715164gi_14532501_gb_AY039875.1 —255880_athypothetical protein predicted by genscan+At1g670602.26−1.010.0154120.926607254660_atreceptor serine/threonine kinase-like proteinAt4g182502.26−1.060.0241870.802259receptor serine/threonine kinase PR5K,PATCHX: G1235680264528_athypothetical protein similar to Human XE169At1g308102.251.030.006440.758062protein (gi|3033385); similar to EST gb|T88128257784_atgeranylgeranylated protein, putative similar toAt3g269702.251.170.001820.287058ATGP4 GB: AAD00115 from [ Arabidopsis thaliana ]255344_s_atputative receptor-like protein kinaseAt4g045402.251.010.0221520.792265255080_atarabinogalactan-protein homolog arabinogalactan-At4g090302.25−1.040.0366040.768432protein- Arabidopsis thaliana , PID: g3883126;supported by cDNA:gi_10880496_gb_AF195891.1_AF195891259325_atunknown proteinAt3g053202.24−1.150.0166690.38111252851_atputative protein CLATHRIN COAT ASSEMBLYAt4g400802.24−1.080.0142740.543837PROTEIN AP180- Mus musculus ,SWISSPROT: Q61548; supported by full-lengthcDNA: Ceres: 8970.257071_atunknown protein; supported by cDNA:At3g281802.231.040.0149280.697835gi_15810494_gb_AY056286.1 —253476_atS-receptor kinase-like protein serine/threonine-At4g323002.23−1.040.0090960.440827specific protein kinase PK10 precursor, Oryza sativa ,PIR2: S50767254292_atputative proteinAt4g230302.221.130.0073310.570308249393_atdisease resistance-like protein resistance gene Cf-4,At5g401702.22−1.040.0161270.647441Lycopersicon hirsutum , EMBL: LHJ002235249320_atdisease resistance protein-like non-consensus TTAt5g409102.221.130.0491440.285783donor splice site at exon 1246327_atreceptor-like serine/threonine kinase, putative similarAt1g166702.221.020.0084690.775987to receptor-like serine/threonine kinase GI: 2465923from [ Arabidopsis thaliana ]; supported by cDNA:gi_16649102_gb_AY059921.1 —267537_atputative guanylate kinase; supported by cDNA:At2g418802.21−1.020.0122680.883883gi_7861794_gb_AF204675.1_AF204675251987_atCYTOCHROME P450 71B5; supported by cDNA:At3g532802.21−1.270.0103050.155225gi_3164131_dbj_D78601.1_D78601248981_atregulatory protein NPR1-like; transcription factorAt5g451102.211.110.0208990.556465inhibitor I kappa B-like265611_atunknown protein; supported by full-length cDNA:At2g255102.2−1.040.0103820.533642Ceres: 10730.259071_atunknown protein similar to hin1 GB: CAA68848At3g116502.2−1.020.0088230.776008[ Nicotiana tabacum ]; supported by cDNA:gi_9502173_gb_AF264698.1_AF264698249029_atdisease resistance protein-likeAt5g448702.21.010.0332470.925701265648_atputative beta-1,3-glucanase; supported by full-At2g275002.19−1.070.0157020.521836length cDNA: Ceres: 1126.252921_atputative protein DNA damage-inducible protein-At4g390302.191.570.0267140.071711Synechocystis sp., PIR2: S77364266749_atputative protein kinase contains a protein kinaseAt2g470602.18−1.050.0133720.636302domain profile (PDOC00100)266231_atputative protein kinaseAt2g022202.18−1.010.0085380.969684254878_atheat shock transcription factor-like protein heatAt4g116602.181.150.0159250.386918shock transcription factor HSF29, Glycine max ,PIR2: S59541258764_atputative pectinesterase contains similarity toAt3g107202.17−10.013450.975443pectinesterase GB: AAB57671 [ Citrus sinensis ]266975_athypothetical protein predicted by grailAt2g393802.161.090.0194770.60417254921_atputative protein hypothetical protein F16G20.230-At4g113002.16−1.010.0163350.995903Arabidopsis thaliana , PIR2: T05391; supported byfull-length cDNA: Ceres: 17771.259937_s_atputative ABC transporter contains Pfam profile:At1g713302.141.250.0092880.060426PF00005 ABC transporter255524_athypothetical protein similar to pectinesteraseAt4g023302.14−1.080.0066330.352183250018_atputative protein similar to unknown proteinAt5g181502.14−1.050.0054270.652846(emb|CAB87627.1)249987_atputative protein predicted proteins, ArabidopsisAt5g184902.141.030.0168620.931777thaliana ; supported by full-length cDNA:Ceres: 32414.265722_atputative chlorophyll a/b binding protein; supportedAt2g401002.131.350.0298010.022089by full-length cDNA: Ceres: 6454.262540_athypothetical protein predicted by genemark.hmmAt1g342602.131.10.0227360.377889264767_athypothetical protein similar to putativeAt1g613802.121.150.0124950.215443serine/threonine kinase GI: 4585880 from[ Arabidopsis thaliana ]; supported by full-lengthcDNA: Ceres: 13461.251192_atalpha galactosyltransferase-like protein alphaAt3g627202.12−1.110.01190.381401galactosyltransferase- Trigonella foenum-graecum ,EMBL: TFO245478; supported by cDNA:gi_15983425_gb_AF424587.1_AF424587249984_atputative protein rsc43, Dictyostelium discoideum ,At5g184002.121.050.0063260.639984EMBL: AF011338; supported by full-length cDNA:Ceres: 6084.249237_atputative protein similar to unknown proteinAt5g420502.121.010.0190970.90689(sp|P37707); supported by full-length cDNA:Ceres: 6903.249021_atputative protein similar to unknown proteinAt5g448202.12−1.030.0149550.780757(pir||T04881)266452_athypothetical protein predicted by genscan; supportedAt2g433202.111.010.0102290.93189by cDNA: gi_14517475_gb_AY039573.1 —266168_atputative protease inhibitor; supported by full-lengthAt2g388702.111.070.0119540.24411cDNA: Ceres: 11662.257264_athypothetical protein contains Pfam profile: PF01657At3g220602.111.410.0333250.224965Domain of unknown function; supported by cDNA:gi_14334417_gb_AY034900.1 —252133_athypothetical protein hypothetical protein-At3g509002.11−1.160.0489740.506058Arabidopsis thaliana chromosome 4 AP2 contig,PID: e353223; supported by full-length cDNA:Ceres: 10044.248230_atputative protein similar to unknown proteinAt5g538302.11−1.240.0090040.419028(gb|AAF34839.1); supported by cDNA:gi_13926341_gb_AF372918.1_AF372918247571_atsnap25a; supported by full-length cDNA:At5g612102.111.10.0332790.210386Ceres: 14562.253147_atprotein kinase-like protein serine/threonine-At4g356002.11.10.0075380.342113specific protein kinase APK1, Arabidopsis thaliana ,PIR2: S28615252976_s_atPhospholipase like protein Arabidopsis thalianaAt4g385502.11.020.0051660.820109pEARLI 4 mRNA, PID: g871782260975_atreceptor-like serine/threonine kinase, putativeAt1g534302.09−1.060.024620.698322similar to receptor-like serine/threonine kinaseGB: AAC50043 GI: 2465923 from [ Arabidopsisthaliana ]256799_atunknown protein; supported by cDNA:At3g185602.091.140.0211950.61081gi_14190488_gb_AF380644.1_AF380644246529_atserine/threonine-specific protein kinase-like proteinAt5g157302.091.070.0107940.454295serine/threonine-specific protein kinase NPK15-Nicotiana tabacum ; supported by full-length cDNA:Ceres: 25636.245731_atMAP kinase, putative similar to MAP kinase kinaseAt1g735002.09−1.170.0029260.060075 GI: 3219273 from [ Arabidopsis thaliana ]; supportedby full-length cDNA: Ceres: 112118.257785_atgeranylgeranylated protein, putative similar toAt3g269802.081.120.0275640.130143ATGP4 GB: AAD00115 from [ Arabidopsis thaliana ]251248_atP-glycoprotein-like proetin P-glycoprotein-2-At3g621502.081.180.0063490.219814Arabidopsis thaliana , EMBL: Y10228264841_atputative protein kinase similar to (Z71703), cdc2-At1g037402.071.030.0095330.802311like protein kinase; similar to ESTs gb|T20748,gb|T20464, and emb|Z17761; supported by cDNA:gi_14532735_gi_13430451262360_atreceptor protein kinase, putative similar to receptorAt1g730802.071.070.0497060.387954protein kinase GI: 1389566 from [ Arabidopsisthaliana ]249705_atserine/threonine protein kinase-likeAt5g355802.071.060.027760.584833259876_atputative DnaJ protein similar to dnaJ-like proteinAt1g767002.061.040.0406720.74219GB: CAA72705 [ Arabidopsis thaliana ]; Pfam HMMhit: DnaJ, prokaryotic heat shock protein266316_atunknown protein; supported by cDNA:At2g270802.051.10.0088770.282687gi_15450380_gb_AY052291.1 —262183_atunknown proteinAt1g779002.051.110.0203070.383917260345_atreceptor protein kinase, putative similar to receptorAt1g692702.05−1.160.025120.233028protein kinase GI: 1389566 from ( Arabidopsisthaliana ); supported by cDNA:gi_4204848_gb_U55875.1_ATU55875260635_atunknown proteinAt1g624202.04−1.190.009580.160716253780_atprotein phosphatase 2C-like protein proteinAt4g284002.041.020.0490770.837741phosphatase 2C-fission yeast, PIR2: S54297;supported by cDNA:gi_16604584_gb_AY059737.1 —251218_atCP12 protein precursor-like protein CP12 proteinAt3g624102.041.050.0059910.528908precursor, chloroplast- Pisumsativum , PIR: T06562; supported by full-lengthcDNA: Ceres: 2721.245641_atExpressed protein; supported by full-length cDNA:At1g253702.04−1.040.04790.829103Ceres: 118770.263915_athypothetical protein predicted by genscan andAt2g364302.03−1.260.0204550.076673genefinder254508_atputative protein gene F4P9.34 chromosome II BACAt4g201702.03−1.030.0320010.79323F4P9, Arabidopsis thaliana253292_atExpressed protein; supported by full-length cDNA:At4g339852.03−1.020.006380.87138Ceres: 9341.265772_atputative protein kinase contains a protein kinaseAt2g480102.021.040.0126950.802318domain profile (PDOC00100); supported by cDNA:gi_14335115_gb_AY037237.1 —265375_atunknown protein; supported by full-length cDNA:At2g065302.021.080.0155520.48528Ceres: 91878.265208_atputative giberellin beta-hydroxylase containsAt2g366902.01−1.350.0068680.034666similarities to GA beta-20-hydroxylase from tobacco(GB: 3327245) and to ethylene forming enzymefrom Picea glauca (GB: L42466)264746_atunknown protein similar to putative DNA-bindingAt1g623002.011.040.0354150.469191protein GI: 7268215 from [ Arabidopsis thaliana ];supported by cDNA:gi_12658409_gb_AF331712.1_AF331712260312_atputative disease resistance protein similar to diseaseAt1g638802.01−1.170.0185210.24588resistance protein RPP1-WsC GB: AAC72979[ Arabidopsis thaliana ]258173_atputative protein kinase similar to serine/threonineAt3g216302.011.070.0109880.529339protein kinase Pto GB: AAB47421 [ Lycopersiconesculentum ] (Plant Cell 9 (1), 61-73 (1997))247617_atreceptor like protein kinase receptor like proteinAt5g602702−1.350.0026620.065021kinase, Arabidopsis thaliana , PIR: T47484259213_atputative receptor ser/thr protein kinase similar toAt3g090101.991.140.0251610.261501receptor kinase GB: S70769 [ Arabidopsis thaliana ];supported by full-length cDNA: Ceres: 124301.258544_atdisease resistance gene (RPM1) identical to diseaseAt3g070401.99−1.350.0366670.073823resistance gene (RPM1) GB: X87851 [ Arabidopsisthaliana ]249777_atputative protein similar to unknown protein (gbAt5g242101.99−1.110.0220530.175713AAD29063.1)249208_atallene oxide synthase (emb CAA73184.1);At5g426501.991.180.0186570.090962supported by cDNA:gi_6002956_gb_AF172727.1_AF172727248014_atputative protein similar to unknown proteinAt5g563401.99−1.050.0453010.723728(pir||T05064)264223_s_atreceptor kinase, putative similar to receptor kinase 1At1g675201.981.10.0217180.628018GI: 9294449 from [ Arabidopsis thaliana ]262082_s_atwall-associated kinase 2, putative similar toAt1g561201.981.120.0301410.183617receptor-like serine/threonine kinaseGB: AAC50043 GI: 2465923 from [ Arabidopsisthaliana ]249835_s_atputative protein similar to unknown protein (gbAt5g235101.98−1.080.015450.400133AAF01580.1)245051_atputative WRKY-type DNA-binding protein;At2g233201.981.190.0097820.0756supported by cDNA:gi_13506742_gb_AF224704.1_AF224704264351_atunknown protein Contains similarity toAt1g033701.971.020.0264360.91627gb|AB011110 KIAA0538 protein from Homosapiens brain and to phospholipid-binding domainC2 PF|00168. ESTs gb|AA585988 and gb|T04384come from this gene262926_s_atreceptor kinase, putative similar to receptor kinase 1At1g657901.97−1.110.0213080.451766[ Brassica rapa ] GB: BAA23676253326_atputative protein polygalacturonase(EC 3.2.1.15)At4g334401.97−1.050.0191790.7895precursor- Erwinia carotovora , PID: g42330246305_atputative protein protein At2g40060- ArabidopsisAt3g518901.971.20.0161720.125232thaliana , EMBL: AF002109; supported by full-lengthcDNA: Ceres: 93427.245219_atviral resistance protein, putative similar to viralAt1g591241.97−1.030.0105270.805754resistance protein GI: 7110565 from [ Arabidopsisthaliana ]267393_atsimilar to axi 1 protein from Nicotiana tabacumAt2g445001.96−1.240.0258810.212221259109_atputative serine threonine protein phosphatase typeAt3g055801.961.080.0291120.485226one similar to GB: AAC39461252037_atputative calmodulin calmodulin- TetrahymenaAt3g519201.961.10.0154380.170162pyriformis (SGC5), PIR1: MCTE; supported bycDNA: gi_14190470_gb_AF380635.1_AF380635258176_atB regulatory subunit of PP2A, putative similar to BAt3g216501.95−1.170.037920.249846regulatory subunit of PP2A GB: AAB58902[ Arabidopsis thaliana ]256169_atreceptor protein kinase, putative contains PfamAt1g518001.951.20.025360.076434profiles: PF00069: Eukaryotic protein kinasedomain, multiple PF00560: Leucine Rich Repeat260974_atreceptor-like serine/threonine kinase, putativeAt1g534401.94−1.020.0097050.677274similar to receptor-like serine/threonine kinaseGB: AAC50043 GI: 2465923 from [ Arabidopsisthaliana ]252310_atGTPase activating-like protein GTPase activatingAt3g493501.94−10.0267030.921316protein gyp7, Yarrowia lipolytica , EMBL: YLGYP7251790_atelicitor responsive/phloem-like protein FIERG2At3g554701.941.050.0120470.64204protein, Oryza sativa , PIR: T04363249480_s_atprotein kinase-like protein receptor-like proteinAt5g389901.94−1.20.0195930.193368kinase (EC 2.7.1.—) precursor, Madagascarperiwinkle, PIR: T10060249364_atputative protein predicted protein, ArabidopsisAt5g405901.94−1.060.0234630.5486thaliana265385_atputative diacylglycerol kinase; supported by full-At2g209001.931.030.023120.814052length cDNA: Ceres: 15863.264580_atunknown protein EST gb|ATTS0295 comes fromAt1g053401.931.370.0117740.077989this gene; supported by full-length cDNA:Ceres: 20380.258608_atunknown protein; supported by full-length cDNA:At3g030201.931.120.0016150.228742Ceres: 35949.262868_atunknown proteinAt1g649801.921.030.0100640.758096260255_atputative protein kinase similar to p58 protein kinaseAt1g743301.92−1.020.0360980.867257GB: AAB59449 ( Homo sapiens ); contains Pfamprofile: PF00069 Eukaryotic protein kinase domain257902_atreceptor kinase, putative similar to receptor kinaseAt3g284501.921.010.0151580.903391GB: AAD02501 from [ Arabidopsis thaliana ]254211_atphosphatase like protein phosphoprotein phosphataseAt4g235701.921.080.0214780.429462(EC 3.1.3.16) PPT-rat252009_atzinc finger-like protein zinc finger protein 216,At3g528001.921.010.0258340.996803Homo sapiens , EMBL: AF062072; supported bycDNA: gi_14596166_gb_AY042871.1 —265460_atputative caltractin; supported by full-length cDNA:At2g466001.91−1.280.0116930.060574Ceres: 7802.262455_atMlo protein, putative similar to Mlo proteinAt1g113101.91−10.0118580.991742GB: Z83834 GI: 1877220 from [ Hordeumvulgare ]; supported by full-length cDNA:Ceres: 259664.262119_s_atglutathione S-transferase, putative similar toAt1g029301.911.130.0115140.130465glutathione S-transferase GI: 860955 from[ Hyoscyamus muticus ]; supported by cDNA:gi_15215607_gb_AY050332.1 —257700_atunknown protein similar to unknown proteinAt3g127401.911.120.0110760.18275GB: AAD25612 from [ Arabidopsisthaliana ]; supported by full-length cDNA:Ceres: 37019.253534_atcytochrome P450 monooxygenase; supported byAt4g315001.911.10.0084450.216603full-length cDNA: Ceres: 13745.248873_atdisease resistance protein-likeAt5g464501.911.040.0193110.616452251071_atputative protein receptor protein kinasesAt5g019501.89−1.020.0196720.77446250419_atRPP1 disease resistance protein-like diseaseAt5g112501.89−1.160.0070430.23803resistance protein RPP1-WsC, Arabidopsis thaliana ,EMBL: AF098964246018_atExpressed protein; supported by full-length cDNA:At5g106951.881.110.0071660.390262Ceres: 103171.245151_atputative pectinesterase; supported by full-lengthAt2g475501.881.020.0275150.828056cDNA: Ceres: 111254.265499_atputative glucosyltransferaseAt2g154801.87−1.110.0436770.508495263797_atputative WRKY-type DNA binding protein;At2g245701.871.080.0184520.267205supported by cDNA:gi_15991743_gb_AF425836.1_AF425836263731_atmetalloproteinase, putative similar toAt1g599701.87−1.030.0196320.713464metalloproteinase GI: 3128477 from [ Arabidopsisthaliana ]252076_atLS1-like protein AT-LS1 product- ArabidopsisAt3g516601.871.380.0212170.088589thaliana , EMBL: X58827; supported by full-lengthcDNA: Ceres: 107294.258460_atunknown proteinAt3g173301.861.070.0059040.601401245254_atATP-sulfurylase; supported by cDNA:At4g146801.86−1.380.0316980.050397gi_459143_gb_U06275.1_ATU06275266536_athypothetical protein predicted by genefinder;At2g169001.85−1.070.0068460.487008supported by cDNA:gi_14532491_gb_AY039870.1 —265479_athypothetical protein; supported by full-lengthAt2g157601.85−1.040.0488380.747296cDNA: Ceres: 5.262873_athypothetical protein predicted by genemark.hmmAt1g647001.851.20.0063550.233681258207_atputative GTP pyrophosphokinase similar to GTPAt3g140501.85−1.030.0211110.736124PYROPHOSPHOKINASE GB: O87331 from[ Corynebacterium glutamicum ]; supported bycDNA: gi_7141305_gb_AF225703.1_AF225703267335_s_atputative beta-1,3-glucanaseAt2g194401.84−1.280.0258940.194876245218_s_atviral resistance protein, putative, 5 partial similar toAt1g588421.84−1.020.0343480.880456viral resistance protein GI: 7110565 from[ Arabidopsis thaliana ]264082_atunknown protein; supported by full-length cDNA:At2g285701.831.160.0327020.469306Ceres: 36244.260037_atputative DNA-binding protein (RAV2-like) identicalAt1g688401.83−1.210.0294080.263089to residues 34-352 of RAV2 GB: BAA34251( Arabidopsis thaliana ); supported by full-lengthcDNA: Ceres: 19561.258134_atrubisco expression protein, putative similar toAt3g245301.831.060.0144180.42968GB: O22034 from [ Cyanidium caldarium ] (J. PlantRes. 110, 235-245 (1997)); supported by full-lengthcDNA: Ceres: 148454.260314_atunknown protein similar to putative proteinAt1g638301.82−1.010.009320.923314GB: CAA20468 [ Arabidopsis thaliana ]258956_athypothetical protein predicted byAt3g014401.82−1.190.0134060.260869genscan+; supported by full-length cDNA:Ceres: 13653.262649_atunknown protein contains similarity to xenotropicAt1g140401.811.050.0099380.587887and polytropic retrovirus receptor GB: 4759334257972_atputative protein kinase, ATN1 almost identical (1At3g275601.81−1.040.0291150.724347amino acid) to GB: S61766 from [ Arabidopsisthaliana ]; supported by cDNA:gi_16604327_gb_AY058062.1 —250575_atputative proteinAt5g082401.811.080.0222240.516011259826_atarm repeat-containing protein, putative similar toAt1g293401.81.010.029570.88125GI: 2558938 from [ Brassica napus ] (Proc. Natl.Acad. Sci. U.S.A. 95 (1), 382-387 (1998))253364_atF-box protein family, AtFBX13 cotains similarity toAt4g331601.81.010.0155110.924255fimbriata GI: 547307 from [ Antirrhinum majus ]248895_atreceptor protein kinaseAt5g463301.8−1.030.0145270.815519263457_atunknown proteinAt2g223001.791.050.0182980.6555254553_atTMV resistance protein N-like TMV resistanceAt4g195301.79−1.020.0246480.800063protein N, Nicotiana glutinosa , PIR2: A54810254331_s_atcytochrome P450-like protein flavonoid 3,5-At4g227101.791.040.0113570.507737hydroxylase Hf1, Petunia x hybrida , PIR2: S38985245838_atdisease resistance protein, putative similar to diseaseAt1g584101.791.040.0452410.800057resistance protein RPP8 GI: 8843900 from[ Arabidopsis thaliana ]267392_atputative beta-glucosidaseAt2g444901.78−1.010.012930.768374264879_atcotton fiber expressed protein, putative similar toAt1g612601.78−1.080.0208990.6028cotton fiber expressed protein 1 GI: 3264828 from[ Gossypium hirsutum ]251804_atbeta-1,3-glucanase-like protein probable beta-1,3-At3g554301.78−1.020.0332780.91732glucanase, Triticum aestivum , PIR: T06268;supported by full-length cDNA: Ceres: 8980.249314_atreceptor kinase-like proteinAt5g411801.781.150.0342210.348074245456_atdisease resistance RPP5 like proteinAt4g169501.78−1.020.0147990.787739267169_atputative oxidoreductaseAt2g375401.771.010.0200160.912423265079_athypothetical protein contains similarity to zinc fingerAt1g554601.76−1.020.0154290.82749protein rts2 GB: U16133 GI: 563244 from[ Saccharomyces cerevisiae ]; supported by cDNA:gi_13430439_gb_AF360132.1_AF360132259230_atunknown protein; supported by cDNA:At3g077801.761.130.0125230.041915gi_15028084_gb_AY045899.1 —250850_atputative protein; supported by cDNA:At5g045501.76−1.140.0150930.108003gi_13605828_gb_AF367313.1_AF367313261506_atcholine kinase, putative similar toAt1g716971.751.030.0336380.818348CHOLINE/ETHANOLAMINE KINASEGB: Q9Y259 from [ Homo sapiens ]251028_atputative protein putative hydrolase At2g32150-At5g022301.75−1.060.0199240.548891Arabidopsis thaliana , EMBL: AC006223; supportedby full-length cDNA: Ceres: 36724.258336_atputative ethylene-inducible protein similar toAt3g160501.741.130.0196560.136759ethylene-inducible protein GB: M88254 from [ Heveabrasiliensis ]; supported by cDNA:gi_4103951_gb_AF029980.1_AF029980253415_atputative protein peptidyl-prolyl cis-trans isomerase,At4g330601.741.150.0229330.090678Schizosaccharomyces pombe , gb: SPBC16H5251643_atguanylate kinase-like protein guanylate kinase-At3g575501.741.120.0146590.125227Mus musculus , TREMBL: MMU53514_1; supportedby cDNA: gi_7861797_gb_AF204676.1_AF204676247384_atprotein kinase; supported by cDNA:At5g633701.741.110.0108520.400409gi_16974578_gb_AY060555.1 —265269_athypothetical protein predicted by genscanAt2g429501.721.090.0178780.365888262571_athypothetical protein predicted by genscan+;At1g154301.721.120.0229120.305054supported by cDNA:gi_15293248_gb_AY051058.1 —259466_atresponse regulator 5, putative similar to responseAt1g190501.72−1.030.0267290.64387regulator 5 GI: 3953599 from [ Arabidopsis thaliana ];supported by cDNA:gi_3953602_dbj_AB008490.1_AB008490254723_atammonium transport protein (AMT1); supported byAt4g135101.721.080.0117540.406577cDNA: gi_14335079_gb_AY037219.1 —253193_atputative protein SEC7 protein, SaccharomycesAt4g353801.721.120.0199370.504827cerevisiae , PIR2: S49764265461_atunknown protein similarity to ubiquitin family ofAt2g465001.711.180.0196910.111325proteins; supported by cDNA:gi_16930424_gb_AF419566.1_AF419566253614_atputative protein heat shock protein 101- TriticumAt4g303501.71−1.070.0304790.677967aestivum , PID: g4558484247816_atsimilar to unknown protein (pir||S75584); supportedAt5g582601.71−1.120.0112360.191707by full-length cDNA: Ceres: 3488.262457_athypothetical protein similar to hypothetical proteinAt1g112001.7−1.030.0176090.719233GB: CAB36801 GI: 4455265 from [ Arabidopsisthaliana ]; supported by full-length cDNA: Ceres:40975.255512_atExpressed protein; supported by cDNA:At4g021951.691.060.0146360.692316gi_5059351_gb_AF154574.1_AF154574251516_s_atputative protein hypothetical protein SPCC320.08-At3g593101.69−1.060.0175340.387516Schizosaccharomyces pombe , PIR: T41303254103_atputative protein; supported by full-length cDNA:At4g250301.681.040.0077540.433098Ceres: 16463.245757_atphosphate-induced (phi-1) protein, putative similarAt1g351401.68−1.510.0046330.081204to phi-1 GB: BAA33810 GI: 3759184 from[ Nicotiana tabacum ]; supported by full-length cDNA:Ceres: 118937.253387_atP-Protein-like protein P-Protein precursor, SolanumAt4g330101.661.040.0190860.463263tuberosum , gb: Z99770; supported by cDNA:gi_14596024_gb_AY042800.1 —247272_atGTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-At5g643001.6610.0113750.888475phoshate synthase (emb|CAA03884.1) supported bycDNA: gi_940382_dbj_D45165.1_ATHGTPCII261788_atunknown protein; supported by full-length cDNA:At1g159801.65−1.050.0133730.66035Ceres: 122986.249010_atunknown protein; supported by cDNA:At5g445801.651.050.0089050.282782gi_15027902_gb_AY045808.1 —259074_atputative protein kinase contains Pfam profile:At3g021301.63−1.030.0079590.571341Eukaryotic protein kinase domain258394_atunknown protein; supported by full-length cDNA:At3g155301.631.070.0042840.548019Ceres: 15303.258665_atthioredoxin-like protein similar to thioredoxin H-At3g087101.611.030.00830.731007type GB: P29448 [ Arabidopsis thaliana ]253317_atputative proteinAt4g33960−1.83−1.770.0103410.022397260126_atputative hydroxymethyltransferase similar to serineAt1g36370−1.93−1.860.0057010.006964hydroxymethyltransferage GB: P50433 from[ Solanum tuberosum ]; supported by full-lengthcDNA: Ceres: 122515.246926_atputative proteinAt5g25240−2.09−2.210.0196030.017979258217_atunknown protein contains Pfam profile PF00398At3g17990−2.21−2.270.0098870.0037Ribosomal RNA adenine dimethylases258218_atmethyltransferase, putative similar toAt3g18000−2.21−2.290.006670.009294methyltransferase GB: AAC01738 from[ Amycolatopsis mediterranei ]254343_atPRH26 protein; supported by full-length cDNA:At4g21990−2.22−1.830.0128380.031291Ceres: 36866.265121_atsimilar to flavin-containing monooxygenaseAt1g62560−2.37−1.870.0201260.00922(sp|P36366); similar to ESTs gb|R30018, gb|H36886,gb|N37822, and gb|T88100 similar to flavin-containing monooxygenase GB: AAA21178GI: 349534 from [ Oryctolagus cuniculus ]; supportedby cDNA: gi_13877746_gb_AF37013251039_atputative protein hypothetical protein T6H20.90-At5g02020−3.73−1.910.0018990.021967Arabidopsis thaliana , EMBL: AL096859; supportedby cDNA: gi_16648747_gb_AY058150.1 —259015_atunknown protein similar to hypothetical proteinAt3g07350−3.79−1.810.0017620.010373GB: AAC17612 [ Arabidopsis thaliana ]; supported byfull-length cDNA: Ceres: 251012.248676_atputative protein similar to unknown proteinAt5g48850−5.55−4.230.0034280.003335(gb|AAC72543.1)249752_atputative protein similar to unknown protein (embAt5g24660−5.87−2.270.0026540.005949CAB62461.1); supported by full-length cDNA:Ceres: 268701.246935_atleucine-rich repeats containing protein grr1-At5g25350−1.64−1.090.010770.205242Glycine max. EMBL: AF019910261957_atmethionine/cystathionine gamma lyase, putativeAt1g64660−1.661.10.0175090.258584similar to methionine gamma-lyaseGB: CAA04124.1 GI: 2330885 from [ Trichomonasvaginalis ]; supported by cDNA:gi_15450931_gb_AY054546.1 —263284_atunknown proteinAt2g36100−1.681.210.0093850.046069263064_atputative bZIP transcription factor contains a bZIPAt2g18160−1.68−1.040.0037050.553739transcription factor basic domain signature(PDOC00036); supported by cDNA:gi_14335073_gb_AY037216.1 —265102_atputative peroxidase similar to cationic peroxidaseAt1g30870−1.691.010.0085340.760053(gi|1232069); similar to EST gb|AI100412; supportedby full-length cDNA: Ceres: 123968.259773_atauxin-induced protein, putative similar toAt1g29500−1.691.030.0174790.683467SP: P33083 from [ Glycine max ]258181_atnitrate transporter identical to nitrate transporterAt3g21670−1.7−1.680.0137130.025046GB: CAB38706 [ Arabidopsis thaliana ]; supported byfull-length cDNA: Ceres: 111089.252220_atputative protein hypothetical protein- ArabidopsisAt3g49940−1.7−1.080.0102420.277047thaliana , EMBL: CAB38293; supported by full-lengthcDNA: Ceres: 17840.251524_at3-isopropylmalate dehydratase-like protein (smallAt3g58990−1.71−1.30.0156170.116619subunit) 3-isopropylmalate dehydratase, smallsubunit- Thermotoga maritima , PIR: A72363258008_atputative late embryogenesis abundant protein similarAt3g19430−1.721.260.0075780.089324to GB: AAB01570 from [ Picea glauca ]263227_atExpressed protein; supported by cDNA:At1g30750−1.731.10.009310.284316gi_15292976_gb_AY050922.1 —263118_atputative 3-methylcrotonyl-CoA carboxylase ESTsAt1g03090−1.73−1.220.0094530.064506gb|H35836, gb|AA651295 and gb|AA721862 comefrom this gene; supported by cDNA:gi_533706_gb_U12536.1_ATU12536248252_atputative protein similar to unknown proteinAt5g53250−1.731.160.0057850.142465(emb|CAB71094.1)256598_atcytochrome P450 homolog, putative similar toAt3g30180−1.741.010.0191650.939678cytochrome P450 homolog GB: U54770 GI: 1421740from [ Lycopersicon esculentum ]; supported by full-length cDNA: Ceres: 11278.256062_atunknown protein; supported by full-length cDNA:At1g07090−1.751.030.0079710.599694Ceres: 28780.263490_atF-box protein ORE9, AtFBL7 identical to F-boxAt2g42620−1.761.140.0143840.078788containing protein ORE9 GI: 15420162 from[ Arabidopsis thaliana ]247477_atputative protein 21K protein precursor, MedicagoAt5g62340−1.761.030.0197340.869872sativa , PIR: T09390262399_atunknown protein; supported by full-length cDNA:At1g49500−1.77−1.050.0189230.609256Ceres: 33047.259856_atunknown protein; supported by full-length cDNA:At1g68440−1.77−1.410.0170350.048737Ceres: 34166.253510_athypothetical proteinAt4g31730−1.771.290.0345780.053073251017_atprotein phosphatase-like protein proteinAt5g02760−1.77−1.040.0073170.502031phosphatase 2C homolog, Mesembryanthemumcrystallinum , EMBL: AF097667248279_atputative protein similar to unknown proteinAt5g52910−1.77−1.280.0163830.116964(pir||T13959)266191_atputative peroxidaseAt2g39040−1.781.260.0120610.114533253217_atactin depolymerizing factor-like protein actinAt4g34970−1.781.310.0111640.086098depolymerizing factor1, Arabidopsis thaliana ,PID: G1408471262717_s_atputative cytochrome P450 similar to gb|AF069494At1g16410−1.79−1.320.0169050.014389cytochrome P450 from Sinapis alba and is a memberof the PF|00067 Cytochrome P450 family. ESTgb|F14190 comes from this gene; supported bycDNA: gi_15208670_gb_AY035021.2 —262517_atputative glutathione transferase Second of threeAt1g17180−1.791.020.020660.906386repeated putative glutathione transferases. 72%identical to glutathione transferase [ Arabidopsisthaliana ] (gi|4006934). Location of ests 191A10T7(gb|R90188) and 171N13T7 (gb|R65532)256926_athypothetical protein predicted by genemark.hmmAt3g22540−1.791.210.0368510.289954256252_atglucosyl transferase, putative similar to zeatin O-At3g11340−1.791.590.0199210.01385xylosyltransferase SP: P56725 [ Phaseolus vulgaris(Kidney bean) (French bean)]261226_atexpansin S2 precursor, putative similar toAt1g20190−1.8−1.050.0126550.608442GB: U30460 from [ Cucumis sativus ]; supported byfull-length cDNA: Ceres: 11011.251144_atanthranilate N-benzoyltransferase-like proteinAt5g01210−1.81.110.0085240.106988anthranilate N-benzoyltransferase, clove pink,PIR: T10717; supported by cDNA:gi_15912268_gb_AY056412.1 —265645_atunknown proteinAt2g27370−1.811.10.0259760.504975249923_atconglutin gamma-like protein conglutin gammaAt5g19120−1.81−1.050.0078680.519593precursor, Lupinus angustifolius , PIR: S21426;supported by cDNA:gi_15010797_gb_AY045700.1 —247914_atxyloglucan endotransglycosylaseAt5g57540−1.81−1.030.0268710.814009265048_atjasmonate inducible protein, putative similar toAt1g52050−1.821.150.0226450.325821jasmonate inducible protein GI: 9279642 from[ Arabidopsis thaliana ]252970_atsmall auxin up RNA (SAUR-AC1); supported byAt4g38850−1.821.190.0070420.093178full-length cDNA: Ceres: 14973.249862_atPGPD14 protein; supported by full-length cDNA:At5g22920−1.82−1.20.0133350.024948Ceres: 41666.266820_atputative AP2 domain transcription factor pFAMAt2g44940−1.84−1.270.0275290.279728domain (PF00847)supported by full-length cDNA:Ceres: 31044.258038_atunknown protein; supported by full-length cDNA:At3g21260−1.84−1.250.0244830.131574Ceres: 260109.252250_atputative protein predicted protein, ArabidopsisAt3g49790−1.85−1.20.0117150.131586thaliana247337_atputative protein similar to unknown proteinAt5g63660−1.8510.0216420.941607(pir||S51637)260167_athypothetical protein predicted by genscan+At1g71970−1.86−1.060.024250.744455257162_s_atammonium transporter, putative similar toAt3g24290−1.86−1.030.017770.655292GB: AAD54638 from [ Arabidopsis thaliana ] (PlantCell (1999) 11 (5), 937-948)246275_atputative protein; supported by full-length cDNA:At4g36540−1.861.060.0116450.640095Ceres: 123997.245586_athypothetical proteinAt4g14980−1.861.160.0377310.349881245136_atputative auxin-regulated proteinAt2g45210−1.861.10.0208690.28948262850_atsignal response protein (GAI) identical to GAIAt1g14920−1.87−1.050.0126470.589803GB: CAA75492 GI: 2569938 [ Arabidopsis thaliana ](Genes Dev. In press); supported by cDNA:gi_16648833_gb_AY058194.1 —258080_atunknown protein; supported by full-length cDNA:At3g25930−1.871.110.0254510.601329Ceres: 2767.253255_atputative auxin-regulated protein auxin-inducedAt4g34760−1.87−1.20.0076830.154545protein X15, Glycine max , PIR2: JQ1097; supportedby full-length cDNA: Ceres: 10510.246996_atputative protein similar to unknown proteinAt5g67420−1.87−1.170.0291090.184764(emb|CAB62102.1); supported by full-length cDNA:Ceres: 40250.265511_atputative glycine-rich protein; supported by cDNA:At2g05540−1.88−1.360.0046530.037214gi_15215617_gb_AY050337.1 —264957_atF-box protein family, AtFBL5 contains similarity toAt1g77000−1.88−1.060.0215050.577258F-box protein FBL2 GI: 6063090 from [ Homosapiens ]; supported by full-length cDNA:Ceres: 3549.264467_atunknown protein similar to ESTAt1g10140−1.881.260.0124150.023258gb|AA598098; supported by full-length cDNA:Ceres: 23916.256828_atunknown proteinAt3g22970−1.881.180.0177760.232803248178_atroot cap protein 2-like proteinAt5g54370−1.881.290.008980.087446262396_atunknown protein; supported by full-length cDNA:At1g49470−1.89−1.170.021150.065156Ceres: 95546.259976_athypothetical protein; supported by full-lengthAt1g76560−1.89−1.220.0114960.142412cDNA: Ceres: 147838.252834_atputative protein RING-H2 zinc finger protein ATL6-At4g40070−1.891.240.0307510.235116Arabidopsis thaliana , PID: g4928403; supported bycDNA: gi_16930492_gb_AF419600.1_AF419600250860_atamino acid transport-like protein amino acidAt5g04770−1.89−1.190.021170.317647transport protein AAT1, Arabidopsis thaliana ,PIR: S51171; supported by full-length cDNA: Ceres:158156.265049_atjasmonate inducible protein, putative similar toAt1g52060−1.91.310.0102220.06857jasmonate inducible protein GI: 9279642 from[ Arabidopsis thaliana ]265050_atjasmonate inducible protein, putative similar toAt1g52070−1.911.320.0190220.277021jasmonate inducible protein GI: 9279641 from[ Arabidopsis thaliana ]252991_atprotein kinase like protein protein kinase 6 (ECAt4g38470−1.91−1.430.0228820.0537332.7.1.—)-soybean, PIR2: S29851250157_atprx10 peroxidase-like protein prx10 peroxidase,At5g15180−1.911.050.0097460.667075Spinacia oleracea , EMBL: SOY16776267457_atputative proline-rich proteinAt2g33790−1.921.550.026880.053166266882_atunknown protein; supported by full-length cDNA:At2g44670−1.92−1.350.009350.103065Ceres: 40641.263208_atzinc finger protein 5, ZFP5 possible transcriptionAt1g10480−1.931.060.0093670.572822factor with C2H2 zinc finger; supported by full-length cDNA: Ceres: 23664.253722_atputative protein zinc finger transcription factor-At4g29190−1.931.080.0045920.184244Arabidopsis thaliana , PID: g2961542; supported byfull-length cDNA: Ceres: 16432.251356_atputative protein hypothetical proteins- ArabidopsisAt3g61060−1.93−1.130.0078480.181064thaliana ; supported by cDNA:gi_14334587_gb_AY034967.1 —245176_atunknown protein similar to GP|2104534|AF001308At2g47440−1.93−1.640.0312850.016259(T10M13.11)262170_athypothetical protein predicted byAt1g74940−1.941.090.0074920.34681genemark.hmm; supported by full-length cDNA:Ceres: 24864.260900_s_atbranched-chain alpha keto-acid dehydrogenase,At1g21400−1.94−1.330.0035360.091842putative similar to branched-chain alpha keto-aciddehydrogenase GB: AAC69851 GI: 3822223 from[ Arabidopsis thaliana ]260058_atunknown protein; supported by cDNA:At1g78100−1.941.220.0263380.07061gi_15450975_gb_AY054568.1 —259854_atRING-H2 zinc finger protein ATL3, putative similarAt1g72200−1.941.070.0063180.364739to GI: 4928397 from [ Arabidopsis thaliana ] (PlantMol. Biol. 40 (4), 579-590 (1999))258145_atintegral membrane protein, putative similar toAt3g18200−1.941.080.0329130.537375MtN21 (nodulation-induced gene) GB: CAA75575[ Medicago truncatula ]253763_atxyloglucan endotransglycosylase-like proteinAt4g28850−1.94−1.070.0104030.604484xyloglucan endotransglycosylase 1, Fagus sylvatica ,PID: e1354157249008_atputative protein contains similarity to DNA-3-At5g44680−1.941.040.0197330.431852methyladenine glycosylase I; supported by full-lengthcDNA: Ceres: 29551.261711_atunknown protein similar to hypothetical proteinAt1g32700−1.95−1.070.0222520.357576GB: AAF25968 GI: 6714272 from [ Arabidopsisthaliana ]; supported by full-length cDNA:Ceres: 206224.260887_atascorbate oxidase promoter-binding protein, putativeAt1g29160−1.95−1.050.0087730.547417similar to ascorbate oxidase promoter-bindingprotein GB: D45066 GI: 853689 from [ Cucurbitamaxima ]254718_atputative protein disease resistance response proteinAt4g13580−1.951.130.0081660.148335206-d, Pisum sativum , U11716253103_atputative auxin-induced protein high similarity toAt4g36110−1.951.240.0071430.125412auxin-induced protein 15A, soybean, PIR2: JQ1096;supported by cDNA:gi_13194817_gb_AF349524.1_AF349524245987_atNAM-like protein hypothetical protein SENU5,At5g13180−1.95−10.0309790.994604senescence up-regulated- Lycopersicon esculentum ,EMBL: Z75524; supported by cDNA:gi_14326559_gb_AF385734.1_AF385734264130_athypothetical protein predicted by genemark.hmmAt1g79160−1.96−1.010.0076030.925019257076_atunknown proteinAt3g19680−1.96−1.320.006420.015347248564_atputative protein contains similarity to AT-hookAt5g49700−1.961.110.0173130.355178DNA-binding protein246228_atperoxidase like proteinAt4g36430−1.961.30.0141560.048404245090_atputative integral membrane protein nodulinAt2g40900−1.961.070.0231570.443533265031_atserine/threonine protein kinase, putative similar toAt1g61590−1.971.110.03130.357745serine/threonine protein kinase GI: 1066501 from[ Arabidopsis thaliana ]263981_atunknown protein; supported by full-length cDNA:At2g42870−1.97−1.130.0134250.350209Ceres: 102453.252570_atisovaleryl-CoA-dehydrogenase precursor (IVD);At3g45300−1.97−1.070.0159730.428779supported by full-length cDNA: Ceres: 33674.248432_atputative protein similar to unknown proteinAt5g51390−1.97−1.140.0062970.177565(gb|AAB68039.1); supported by full-length cDNA:Ceres: 1076.267628_atunknown protein similar to GP|2262147|AC002330At2g42280−1.981.010.0231130.929253266941_atperoxidase (ATP22a) identical to GB: Y08781At2g18980−1.98−1.160.0140240.253565266838_atsimilar to jasmonate-inducible proteins fromAt2g25980−1.981.030.0137910.844383Brassica napus263318_atExpressed protein; supported by full-length cDNA:At2g24762−1.981.020.0194250.816736Ceres: 19631.260081_atunknown proteinAt1g78170−1.981.10.0109120.443013257654_atDnaJ protein, putative contains Pfam profile:At3g13310−1.981.190.0184970.11787PF00226 DnaJ domain; supported by full-lengthcDNA: Ceres: 31309.257294_atnon-phototropic hypocotyl protein, putative similarAt3g15570−1.98−1.40.0175940.029437to GB: AAF05914 from [ Arabidopsisthaliana ]; supported by full-length cDNA:Ceres: 118259.254606_atnodulin-26-like protein major intrinsic protein,At4g19030−1.981.030.0086730.680712Oryza sativa , PIR2: S52003; supported by full-lengthcDNA: Ceres: 109513.264014_atputative auxin-regulated proteinAt2g21210−1.99−1.170.0029260.036113260770_atRING-H2 finger protein RHA3a, putative similar toAt1g49200−1.991.240.0248550.128926RING-H2 finger protein RHA3a GI: 3790573 from[ Arabidopsis thaliana ]; supported by cDNA:gi_14517431_gb_AY039551.1 —260693_atpeptide transporter PTR2-B, putative similar toAt1g32450−1.99−10.0297910.955651SP: P46032 from [ Arabidopsis thaliana ]257448_s_atputative protein various predicted proteinsAt3g45800−1.99−1.120.0181990.206911Arabidopsis thaliana259328_atputative lectin contains Pfam profile: PF01419At3g16440−21.240.0103140.191237jacalin-like lectin domain; similar to jasmonateinducible protein GB: Y11483 ( Brassica napus ),myrosinase binding protein GB: BAA84545( Arabidopsis thaliana ); supported by cDNA:gi_6694742_gb_AF214573.1_AF2145263151_athypothetical protein predicted byAt1g54120−2.01−1.320.0266760.072957genemark.hmm; supported by full-length cDNA:Ceres: 94743.262427_s_atthioglucosidase, putative similar to thioglucosidaseAt1g47600−2.011.20.0084110.161898GI: 871992 from [ Arabidopsis thaliana ]261822_atunknown protein; supported by full-length cDNA:At1g11380−2.01−1.420.0355810.129626Ceres: 113571.265245_atunknown proteinAt2g43060−2.03−1.030.0105590.598558258511_atunknown protein; supported by full-length cDNA:At3g06590−2.03−1.060.0057210.306173Ceres: 9391.251072_atputative protein wound-inducible protein wun1At5g01740−2.03−1.260.0239910.03577protein- Solanum tuberosum , PIR: JQ0398; supportedby full-length cDNA: Ceres: 248967.267178_atunknown protein; supported by full-length cDNA:At2g37750−2.041.30.0119380.023415Ceres: 28529.262236_athypothetical protein similar to hypothetical proteinAt1g48330−2.04−1.170.0289430.116441GI: 9294146 from [ Arabidopsis thaliana ]250717_atputative protein similar to unknown proteinAt5g06200−2.041.10.0147660.475991(gb|AAF00668.1)263265_athypothetical protein predicted by genscan andAt2g38820−2.05−1.040.0284130.735506genefinder; supported by cDNA:gi_16649128_gb_AY059934.1 —263150_atheat-shock protein, putative similar to heat-shockAt1g54050−2.051.30.0193740.275131protein GI: 472939 from [ Helianthusannuus ]; supported by full-length cDNA:Ceres: 97415.254820_s_atpEARLI 1-like protein Arabidopsis thalianaAt4g12510−2.051.070.006460.52646pEARLI 1 mRNA, completecds, PID: g871780251174_atputative protein latex protein allergen Hev b 7-At3g63200−2.05−1.090.0116790.253402Hevea brasiliensis , EMBL: AF113546; supported bycDNA: gi_15912226_gb_AY056391.1 —250469_atpollen allergen-like protein SAH7 protein,At5g10130−2.05−1.050.0210860.612309Arabidopsis thaliana , EMBL: ATH133639249606_atputative protein DNA-binding protein CCA1,At5g37260−2.051.110.0111380.453754Arabidopsis thaliana , PIR: T02684252368_atcytochrome P450-like protein cytochrome P450At3g48520−2.061.180.0179480.40172CYP94A1- Vicia sativa , PIR2: T08014245277_atglucosyltransferase like protein; supported byAt4g15550−2.07−1.210.0047250.325423cDNA: gi_2149126_gb_U81293.1_ATU81293260266_atputative B-box zinc finger protein contains PfamAt1g68520−2.08−1.060.0235510.259093profile: PF00643 B-box zinc finger; supported byfull-length cDNA: Ceres: 108109.260741_athypothetical protein contains Pfam profile: PF00117At1g15045−2.091.120.0164770.263068Glutamine amidotransferase class-I257858_athypothetical protein predicted byAt3g12920−2.110.0191420.98788genefinder; supported by full-length cDNA:Ceres: 924.266372_atputative two-component response regulator 3At2g41310−2.11−1.240.0132810.195422protein identical to GB: AB010917, contains aresponse regulator receiver domain; supported bycDNA: gi_3273199_dbj_AB010917.1_AB010917266072_atputative trehalose-6-phosphate synthaseAt2g18700−2.11−1.080.0056160.502618255858_atzinc finger protein (ZFP6) identical to zinc fingerAt1g67030−2.111.30.0171960.066902protein GI: 790683 from [ Arabidopsis thaliana ];supported by cDNA:gi_15215716_gb_AY050387.1 —247954_atbeta-galactosidase (emb|CAB64740.1); supportedAt5g56870−2.12−1.360.013220.072012by cDNA: gi_15451017_gb_AY054589.1 —252036_atputative protein; supported by full-length cDNA:At3g52070−2.13−1.210.0116810.137087Ceres: 118329.258497_atputative flowering-time gene CONSTANS (COL2)At3g02380−2.14−1.470.0189790.03124identical to putative flowering-time geneCONSTANS (COL2) GB: AAB67879 GI: 1507699( Arabidopsis thaliana ); supported by full-lengthcDNA: Ceres: 949.253829_atMedicago nodulin N21-like protein MtN21 gene,At4g28040−2.14−1.20.0069270.185535Medicago truncatula , Y15293; supported by cDNA:gi_13899060_gb_AF370525.1_AF370525248801_athomeobox-leucine zipper protein-like; supported byAt5g47370−2.141.060.0083470.456353cDNA: gi_15450446_gb_AY052324.1 —247921_atCONSTANS-like B-box zinc finger protein-like;At5g57660−2.14−1.130.0031170.120344supported by full-length cDNA: Ceres: 6639.257615_atunknown proteinAt3g26510−2.16−1.130.0048380.273425266140_atnodulin-like protein; supported by cDNA:At2g28120−2.17−1.30.0082440.055633gi_16209713_gb_AY057618.1 —257643_atAP2 domain transcription factor contains PfamAt3g25730−2.17−1.320.0383340.152701profile: PF00847 AP2 domain; similar to RAV1(DNA-binding protein) GB: BAA34250 [ Arabidopsisthaliana ] (Nucleic Acids Res. 27 (2), 470-478(1999)); supported by full-length cDNA:Ceres: 39877.248528_atputative protein similar to unknown proteinAt5g50760−2.181.010.0085660.918675(emb|CAB86483.1)264788_atputative DnaJ protein; supported by full-lengthAt2g17880−2.19−1.250.0111010.265694cDNA: Ceres: 22711.253957_atputative protein; supported by cDNA:At4g26320−2.19−1.160.0065080.414219gi_10880502_gb_AF195894.1_AF195894247199_atDNA binding protein TGA1a homolog; supportedAt5g65210−2.191.090.0100730.256741by full-length cDNA: Ceres: 31032.247170_atputative protein contains similarity to lectin-likeAt5g65530−2.191.20.0207520.326964protein kinase250099_atunknown protein; supported by cDNA:At5g17300−2.21.130.0180910.37707gi_14190364_gb_AF378860.1_AF378860247474_atputative protein predicted proteins, ArabidopsisAt5g62280−2.21−1.010.0163820.887761thaliana261768_atgibberellin 3 beta-hydroxylase, putative similar toAt1g15550−2.221.010.0378820.920313gibberellin 3 beta-hydroxylase GI: 3982753 from[ Arabidopsis thaliana ]; supported by cDNA:gi_1945343_gb_L37126.1_ATHGA4A259264_atputative aldose 1-epimerase shows similarity toAt3g01260−2.221.220.0231260.227322aldose epimerases253812_atputative wound induced protein wound-inducedAt4g28240−2.25−1.090.005480.137021protein-tomato (fragment), PIR2: S19773; supportedby full-length cDNA: Ceres: 20161.246917_atserine-rich protein; supported by full-length cDNA:At5g25280−2.251.240.0089470.039883Ceres: 99323.261265_athypothetical protein predicted byAt1g26800−2.261.20.0227930.218643genscan+; supported by full-length cDNA:Ceres: 250127.246229_atpectinesterase like proteinAt4g37160−2.261.070.013830.725863250012_x_atauxin-induced protein-likeAt5g18060−2.271.110.0225740.446969259751_atputative transcription factor similar to myb-relatedAt1g71030−2.29−1.310.0043070.051811transcription factor 24 GB: S71287; supported by full-length cDNA: Ceres: 31592.246932_atethylene-responsive element-like protein ethylene-At5g25190−2.31−1.280.0152460.042175responsive element binding protein homolog,Stylosanthes hamata , EMBL: U91857; supported bycDNA: gi_15010715_gb_AY045659.1 —264463_atunknown protein similar to ESTs gb|T20511,At1g10150−2.32−1.040.0074280.701582gb|T45308, gb|H36493, and gb|AA651176; supportedby full-length cDNA: Ceres: 2558.252178_atputative protein various predicted proteinsAt3g50750−2.331.170.0165420.191688247149_atunknown protein; supported by full-length cDNA:At5g65660−2.33−1.030.0112320.82378Ceres: 25419.260855_atphosphatidylinositol-4-phosphate 5-kinase, putativeAt1g21920−2.341.020.0106840.812177similar to phosphatidylinositol-4-phosphate 5-kinaseGB: CAB53377 GI: 5777366 from [ Arabidopsisthaliana ]; supported by full-length cDNA:Ceres: 37462.256743_atExpressed protein; supported by full-length cDNA:At3g29370−2.341.090.0073790.34665Ceres: 22461.249065_atputative protein similar to unknown protein (gbAt5g44260−2.34−1.050.0021620.688129AAD10689.1); supported by cDNA:gi_14334449_gb_AY034916.1 —264524_attat-binding protein, putative Highly Similar toAt1g10070−2.35−1.060.0069310.464612branched-chain amino acid aminotransferase;Location of EST gb|T44177 and gb|AA395381;supported by cDNA:gi_15293208_gb_AY051038.1 —264521_atunknown protein Location of EST gb|T41885 andAt1g10020−2.37−1.370.0024420.03961gb|AA395021258091_athypothetical protein predicted by genmark; supportedAt3g14560−2.371.270.0147980.126209by full-length cDNA: Ceres: 19279.261480_atphytochrome kinase substrate 1, putative similar toAt1g14280−2.391.060.0048810.498893phytochrome kinase substrate 1 GI: 5020168 from[ Arabidopsis thaliana ]; supported by full-lengthcDNA: Ceres: 97569.252040_atputative protein hypothetical protein F10M6.70-At3g52060−2.39−1.020.0111270.860596Arabidopsis thaliana , PIR3: T05399; supported bycDNA: gi_15293266_gb_AY051067.1 —246001_atputative protein predicted protein, ArabidopsisAt5g20790−2.39−1.630.0079490.0182thaliana ; supported by full-length cDNA:Ceres: 267031.258809_atNAM-like protein (no apical meristem) similar toAt3g04070−2.4−1.240.0103670.050869NAM GB: CAA63101 [ Petunia x hybrida ]258362_atunknown proteinAt3g14280−2.41−1.20.0079950.150833249467_atNAM/CUC2-like protein CUC2, ArabidopsisAt5g39610−2.41−1.480.0074790.036136thaliana , EMBL: ATAB2560; supported by full-length cDNA: Ceres: 113779.251665_atresponce reactor 4; supported by cDNA:At3g57040−2.42−1.10.0086850.45678gi_3273201_dbj_AB010918.1_AB010918263382_atputative anthranilate N-At2g40230−2.45−1.060.0181350.712794hydroxycinnamoyl/benzoyltransferase; supported byfull-length cDNA: Ceres: 105546.246071_atids4-like protein ids-4 protein- Hordeum vulgare ,At5g20150−2.47−1.140.0024640.214703PIR: T05905; supported by full-length cDNA:Ceres: 32843.247585_atputative protein predicted proteins, ArabidopsisAt5g60680−2.5−1.090.0029090.183267thaliana ; supported by full-length cDNA:Ceres: 16638.264210_atputative myb-related transcription factor Similar toAt1g22640−2.511.260.005620.068761myb-related transcription factor (THM27)gb|X95296 from Solanum lycopersicum . ESTsgb|T42000, gb|T04118, gb|AA598042,gb|AA394757 and gb|AA598046 come from thisgene; supported by cDNA: gi_3941409_gb_AF252965_atputative auxin-induced protein auxin-inducedAt4g38860−2.53−1.120.0061730.26078protein 10A, Glycine max., PIR2: JQ1099253814_atputative protein; supported by full-length cDNA:At4g28290−2.55−1.460.0062940.044367Ceres: 10077.246523_atCONSTANS-like 1At5g15850−2.551.010.0133120.900077263325_atputative RING zinc finger protein; supported byAt2g04240−2.561.180.0045310.13068cDNA: gi_13265496_gb_AF324691.2_AF324691265342_athypothetical protein predicted by genscan; supportedAt2g18300−2.581.10.0149120.315678by cDNA:gi_15724317_gb_AF412099.1_AF412099253872_atputative protein Arabidopsis thaliana napAt4g27410−2.581.210.0045910.057522gene, PID: e1234813; supported by full-length cDNA:Ceres: 38344.264783_atputative calcium-dependent protein kinase (U90439)At1g08650−2.6−1.610.0102630.046318similar to ESTs gb|T46119, gb|H76837, andgb|H36948; supported by cDNA:gi_6318612_gb_AF162660.1_AF162660266363_athypothetical protein predicted by genscan andAt2g41250−2.64−1.630.0026740.015646genefinder260070_atputative helix-loop-helix DNA-binding proteinAt1g73830−2.64−1.190.0101980.127406contains Pfam profile: PF00010 Helix-loop-helixDNA-binding domain250844_atputative protein; supported by full-length cDNA:At5g04470−2.641.220.0092330.425631Ceres: 13812.256589_atcytochrome P450, putative contains Pfam profile:At3g28740−2.66−1.690.0104280.037959PF00067 cytochrome P450; supported by cDNA:gi_15292830_gb_AY050849.1 —265067_athypothetical protein predicted byAt1g03850−2.71.370.0041240.138732genefinder; supported by full-length cDNA:Ceres: 271253.256914_athypothetical proteinAt3g23880−2.721.010.020910.915885251169_atputative protein putative protein At2g25690-At3g63210−2.731.130.0058390.38507Arabidopsis thaliana , EMBL: AC006053; supportedby full-length cDNA: Ceres: 40080.255934_atcytochrome P450, putative similar to cytochromeAt1g12740−2.74−1.110.0100480.828407P450 GI: 4176420 from [ Arabidopsis thaliana ]266150_s_athypothetical proteinAt2g12290−2.771.080.0096860.668542259502_atunknown protein; supported by cDNA:At1g15670−2.77−1.230.0022260.019701gi_15146331_gb_AY049307.1 —263283_athypothetical protein predicted by genscan andAt2g36090−2.791.260.0040.034558genefinder253125_atDnaJ-like protein DnaJ-like protein, PhaseolusAt4g36040−2.831.30.0020960.029069vulgaris , PATX: G1684851248208_atunknown proteinAt5g53980−2.83−1.120.0027440.19142264021_atputative auxin-regulated protein; supported by full-At2g21200−2.851.140.011160.255677length cDNA: Ceres: 7141.249755_atunknown protein; supported by full-length cDNA:At5g24580−2.87−1.020.011270.906115Ceres: 6393.255284_at5-adenylylsulfate reductase; supported by full-At4g04610−2.9−1.530.0078610.08308length cDNA: Ceres: 40330.253207_atputative protein small auxin up-regulated RNA,At4g34770−2.9−1.240.0048420.041275Malus domestica , gb: Z93766252118_atputative protein various predicted proteins,At3g51400−2.9−1.180.0192420.328518Arabidopsis thaliana ; supported by full-length cDNA:Ceres: 14797.247540_atethylene responsive element binding factor-likeAt5g61590−2.991.030.0036160.728822ethylene responsive element binding factor 5,Arabidopsis thaliana ,SWISSPROT: ERF5_ARATH; supported by full-length cDNA: Ceres: 19893.264379_athypothetical protein predicted by grailAt2g25200−3−1.30.0232130.145635263688_atunknown protein Location of EST 228A16T7A,At1g26920−3.05−1.220.007280.304232gb|N65686; supported by full-length cDNA:Ceres: 24946.246522_atbZIP DNA-binding protein-like putative bZIPAt5g15830−3.09−1.460.0107590.157233DNA-binding protein- Capsicum chinense ,EMBL: AF127797258059_atNAM-like protein (No Apical Meristem) similar toAt3g29035−3.251.320.0044730.140279GB: CAA63101 from [ Petunia x hybrida ] (Cell 85(2), 159-170 (1996))259982_atputative RING zinc finger protein contains PfamAt1g76410−3.31−1.010.0112620.945494profile: PF00097 Zinc finger, C3HC4 type (RINGfinger); supported by full-length cDNA: Ceres:27464.262986_atunknown protein similar to hypothetical proteinAt1g23390−3.44−1.220.0081320.177105GB: AAF27090 GI: 6730669 from ( Arabidopsisthaliana ); supported by full-length cDNA:Ceres: 101865.260287_atunknown protein contains two Kelch motifs;At1g80440−3.57−1.180.0080350.221837supported by full-length cDNA: Ceres: 32885.247754_atputative proteinAt5g59080−3.77−1.550.0042790.021198267238_atunknown protein; supported by full-length cDNA:At2g44130−3.861.180.0030360.152629Ceres: 6950.266156_athypothetical protein predicted by genscanAt2g28110−3.991.10.0049140.561885266322_atputative auxin-regulated proteinAt2g46690−4−1.090.0033940.327782258367_atputative protein kinase similar to protein kinaseAt3g14370−4.02−1.070.0052420.532182homolog GB: AAC78477 from [ Arabidopsisthaliana ]; supported by full-length cDNA:Ceres: 96699.253155_atputative protein predicted protein, ArabidopsisAt4g35720−4.2−1.280.006970.318015thaliana265573_atputative zinc-finger protein similar to zinc-fingerAt2g28200−4.25−1.330.007520.040354protein GB: AAC98446247696_atMYB27 protein-like MYB27 protein, ArabidopsisAt5g59780−4.321.370.0031110.017905thaliana , PIR: T46166; supported by cDNA:gi_3941479_gb_AF062894.1_AF062894250937_atputative protein various predicted proteins,At5g03230−4.331.470.0103670.036447Arabidopsis thaliana ; supported by cDNA:gi_13878024_gb_AF370275.1_AF370275251443_atputative protein unknown protein At2g44130-At3g59940−4.721.120.0018140.186012Arabidopsis thaliana , EMBL: AC004005; supportedby full-length cDNA: Ceres: 8014.261177_athypothetical protein predicted by genemark.hmmAt1g04770−5.29−1.410.0019220.031579249454_atexpressed protein predicted protein, SynechocystisAt5g39520−5.74−1.290.0036090.135283sp., PIR: S77152; supported by full-length cDNA:Ceres: 5331.265387_atunknown protein; supported by full-length cDNA:At2g20670−6.17−1.570.0025640.056602Ceres: 34827.254265_s_atserine threonine kinase-like protein KI domainAt4g231402.941.760.1511640.015078interacting kinase 1 (KIK1), Zea mays ; supported bycDNA: gi_13506746_gb_AF224706.1_AF224706263539_atputative tyrosine aminotransferase; supported byAt2g248502.012.20.0667270.012756full-length cDNA: Ceres: 14570.265837_atunknown proteinAt2g145601.912.10.2789380.013727263402_athypothetical protein similar to hypothetical proteinAt2g040501.651.870.1269710.028665GB: AAC27412256766_atExpressed protein; supported by cDNA:At3g222311.621.870.1685680.005967gi_14335055_gb_AY037207.1 —263061_atputative AAA-type ATPaseAt2g181901.481.940.3249830.049719267024_s_atputative aquaporin (plasma membrane intrinsicAt2g343901.461.990.0563780.04848protein)245035_atunknown protein similar toAt2g264001.391.780.3020250.044811GP|2244827|gnl|PID|e326818|Z97336252746_atsucrose synthase-like protein SUCROSEAt3g431901.352.670.113720.012763SYNTHASE (SUCROSE-UDPGLUCOSYLTRANSFERASE), Arabidopsis thalina ,SWISSPROT: SUS1_ARATH; supported by cDNA:gi_14334569_gb_AY034958.1 —263401_athypothetical protein similar to hypothetical proteinAt2g040701.222.220.7349880.005027GB: AAC27412245306_atExpressed protein; supported by full-length cDNA:At4g146901.22.160.221880.009285Ceres: 95834.258277_atputative cytochrome P450 similar to cytochromeAt3g268301.042.610.7544790.013858P450 71B2 GB: O65788 [ Arabidopsis thaliana ]252882_atExpressed protein; supported by full-length cDNA:At4g39675−1.171.940.1068390.012488Ceres: 14423.261913_atflavin-containing monooxygenase FMO3, putativeAt1g65860−1.63−1.850.0587930.008577similar to flavin-containing monooxygenase FMO3GI: 349533 from [ Oryctolagus cuniculus ]249727_atputative protein similar to unknown proteinAt5g35490−1.2−2.090.1905840.008082(gb|AAB61527.1)254474_atputative protein predicted proteins, ArabidopsisAt4g20390−1.06−1.710.5725170.017439thaliana ; supported by full-length cDNA:Ceres: 248721.260856_atTINY-like protein similar to TINY GB: CAA64359At1g219101.17−2.20.2681160.009082GI: 1246403 from [ Arabidopsis thaliana ]; supportedby full-length cDNA: Ceres: 19721.249215_atdihydroflavonol 4-reductaseAt5g428001.61−1.770.4019650.048093254283_s_atanthocyanidin synthase-like protein putativeAt4g228702.09−1.980.1612140.018458leucoanthocyanidin dioxygenase, Arabidopsisthaliana , PID: g1575699 TABLE 4Genes that are Responsive to chitooctaose in the AtLysM RLK1 mutantWTMuProbe setAnnotationAccessionFCFCWT PMu P253046_atcytochrome P450—like protein cytochrome P450,At4g373703.832.170.0192610.016853Glycyrrhiza echinata , AB001379; supported by full-length cDNA: Ceres: 253698.254869_atprotein kinase—like protein KI domain interactingAt4g118903.372.120.0076650.003284kinase 1 - Zea mays , PIR2: T02053246099_atblue copper binding protein; supported by full-At5g202302.671.70.0080610.011289length cDNA: Ceres: 7767.253317_atputative proteinAt4g33960−1.83−1.770.0103410.022397260126_atputative hydroxymethyltransferase similar to serineAt1g36370−1.93−1.860.0057010.006964hydroxymethyltransferage GB: P50433 from[ Solanum tuberosum ]; supported by full-lengthcDNA: Ceres: 122515.246926_atputative proteinAt5g25240−2.09−2.210.0196030.017979258217_atunknown protein contains Pfam profile PF00398At3g17990−2.21−2.270.0098870.0037Ribosomal RNA adenine dimethylases258218_atmethyltransferase, putative similar toAt3g18000−2.21−2.290.006670.009294methyltransferase GB: AAC01738 from[ Amycolatopsis mediterranei ]254343_atPRH26 protein; supported by full-length cDNA:At4g21990−2.22−1.830.0128380.031291Ceres: 36866.265121_atsimilar to flavin-containing monooxygenaseAt1g62560−2.37−1.870.0201260.00922(sp|P36366); similar to ESTs gb|R30018, gb|H36886,gb|N37822, and gb|T88100 similar to flavin-containing monooxygenase GB: AAA21178GI: 349534 from [ Oryctolagus cuniculus ]; supportedby cDNA: gi_13877746_gb_AF37013251039_atputative protein hypothetical proteinAt5g02020−3.73−1.910.0018990.021967T6H20.90 - Arabidopsis thaliana , EMBL: AL096859;supported by cDNA: gi_16648747_gb_AY058150.1 —259015_atunknown protein similar to hypothetical proteinAt3g07350−3.79−1.810.0017620.010373GB: AAC17612 [ Arabidopsis thaliana ]; supported byfull-length cDNA: Ceres: 251012.248676_atputative protein similar to unknown proteinAt5g48850−5.55−4.230.0034280.003335(gb|AAC72543.1)249752_atputative protein similar to unknown protein (embAt5g24660−5.87−2.270.0026540.005949CAB62461.1); supported by full-length cDNA:Ceres: 268701.254265_s_atserine threonine kinase—like protein KI domainAt4g231402.941.760.1511640.015078interacting kinase 1 (KIK1), Zea mays ; supported bycDNA: gi_13506746_gb_AF224706.1_AF224706263539_atputative tyrosine aminotransferase; supported byAt2g248502.012.20.0667270.012756full-length cDNA: Ceres: 14570.265837_atunknown proteinAt2g145601.912.10.2789380.013727263402_athypothetical protein similar to hypothetical proteinAt2g040501.651.870.1269710.028665GB: AAC27412256766_atExpressed protein; supported by cDNA:At3g222311.621.870.1685680.005967gi_14335055_gb_AY037207.1 —263061_atputative AAA-type ATPaseAt2g181901.481.940.3249830.049719267024_s_atputative aquaporin (plasma membrane intrinsicAt2g343901.461.990.0563780.04848protein)245035_atunknown protein similar toAt2g264001.391.780.3020250.044811GP|2244827|gn1|PID|e326818|Z97336252746_atsucrose synthase—like protein SUCROSEAt3g431901.352.670.113720.012763SYNTHASE (SUCROSE-UDPGLUCOSYLTRANSFERASE), Arabidopsis thalina ,SWISSPROT: SUS1_ARATH; supported by cDNA:gi_14334569_gb_AY034958.1 —263401_athypothetical protein similar to hypothetical proteinAt2g040701.222.220.7349880.005027GB: AAC27412245306_atExpressed protein; supported by full-length cDNA:At4g146901.22.160.221880.009285Ceres: 95834.261913_atflavin-containing monooxygenase FMO3, putativeAt1g65860−1.63−1.850.0587930.008577similar to flavin-containing monooxygenase FMO3GI: 349533 from [ Oryctolagus cuniculus ]249727_atputative protein similar to unknown proteinAt5g35490−1.2−2.090.1905840.008082(gb|AAB61527.1)258277_atputative cytochrome P450 similar to cytochromeAt3g268301.042.610.7544790.013858P450 71B2 GB: O65788 [ Arabidopsis thaliana ]252882_atExpressed protein; supported by full-length cDNA:At4g39675−1.171.940.1068390.012488Ceres: 14423.254474_atputative protein predicted proteins, ArabidopsisAt4g20390−1.06−1.710.5725170.017439thaliana ; supported by full-length cDNA:Ceres: 248721.260856_atTINY—like protein similar to TINY GB: CAA64359At1g219101.17−2.20.2681160.009082GI: 1246403 from [ Arabidopsis thaliana ]; supportedby full-length cDNA: Ceres: 19721.249215_atdihydroflavonol 4-reductaseAt5g428001.61−1.770.4019650.048093254283_s_atanthocyanidin synthase—like protein putativeAt4g228702.09−1.980.1612140.018458leucoanthocyanidin dioxygenase, Arabidopsisthaliana , PID: g1575699 The similar regulation patterns for this small number of genes in both the mutant and wild-type plants may be due to some redundant function provided by one of the other four LysM RLKs in the mutant. Eventually, only 6 genes appeared to behave differentially in both the mutant and wild-type (last 6 rows in Table 4). The cause of such a discrepancy is not clear. Since these few genes were only weakly to moderately regulated (−1.7 to 2.6 fold), experimental variation is a possible cause. To determine the functional classification of the 909 genes described above, information of these genes were input into the TAIR web-based GO annotation software. The output shows that the CRGs disclosed here include many defense-related genes (such as genes encoding pathogenesis-related proteins and disease resistance proteins) and signal transduction-related genes (such as various kinases and transcription factors) ( FIG. 12 ), suggesting a potential relationship between gene induction and plant defense mediated by chitooligosaccharides. Since the mutation in the AtLysM RLK1 gene blocked the regulation of almost all CRGs (˜98%) by the chitooligosaccharide, AtLysM RLK1 is very likely the chitin receptor (or part of the receptor complex) that is responsible for perceiving the chitooligosaccharide elicitor and initiating cellular signaling leading to downstream gene expression. This notion is also indirectly supported by its structural features and the findings that LysM RLKs NFR1 and NFR5 in the legume Lotus japonicus serve as the receptors for the lipo-chitin Nod signal. See Limpens et al., 2003; Madsen et al., 2003; Radutoiu et al., 2003. Because many receptor kinases form heterodimers, it has been suggested that the legume NFR1 and NFR5 may function as a heterodimer complex. See e.g., Goring et al., 2004. It is likely that AtLysRLK1 may require a partner protein, either another LysM RLK or a protein similar to the rice CEBiP. Kaku et al., 2006. However, since mutations in the other four AtLysM RLK genes had no obvious effect on the expression of selected CRGs, it seems unlikely that the products of these four genes are essential for the receptor function. There are three CEBiP-like proteins in Arabidopsis , which are encoded by At1g21880, At1g77630 and At2g17120, respectively. If chitooligosaccharide recognition is an integral part of the response pathway by which plants defend against fungal pathogens, mutations in the AtLysM RLK1 gene should affect plant resistance to fungal pathogens. To test this hypothesis, three week-old mutant and wild-type plants were inoculated with the biotrophic powdery mildew fungal pathogen Erysiphe cichoracearum . Ten days later, the mutant plants appeared to support more fungal growth than the wild-type plants. The susceptibility appeared to be less than that observed in NahG plants, which express salicylate hydrolase, preventing the accumulation of salicylic acid, and are therefore very susceptible to the fungal pathogen ( FIG. 13A ). Trypan blue staining of the infected leaves also showed the AtLysM RLK1 mutant supported more hyphal growth and production of conidiophores earlier than the wild-type plants ( FIG. 13B ). Arrows indicate sites where conidiophores are forming. All photographs were taken six days after inoculation. Bar=0.1 mm. 4-week-old plants were also inoculated with the necrotrophic fungus Alternaria brassicicola . Three days after inoculation, the mutant developed slightly bigger lesions than the wild-type plants, as measured by average diameter of the lesions ( FIGS. 13C and 13D ). In agreement with this, the mutant plants also produced more spores per lesion than the wild-type plants ( FIG. 13E ). To test the specificity of AtLysM RLK1 in fungal disease resistance, the response of the mutant to the bacterial pathogen Pseudomonas syringae pv. Tomato DC3000 was also examined. After infiltration with the pathogen, both the mutant and wild-type plants supported a similar bacterial growth three days after inoculation ( FIG. 13F ), indicating that defense against bacterial infection was not affected by the mutation. WT=wild-type Col-0; Mu=the AtLysM RLK1 mutant. CSC=crab shell chitin, 8mer=chitooctaose, and water=distilled water. Empty columns=WT Col-0 and solid black columns=the AtLysM RLK1 mutant. Asterisks indicate statistically significant differences between the mutant and wild-type plants (P<0.05). Error bars=standard error. Each experiment was repeated at least twice with similar results. The mutation in the AtLysM RLK1 gene led to only moderate susceptibility to fungal pathogens, suggesting that AtLysM RLK1 plays a role in mediating basal or general resistance to fungal pathogens through the recognition of the chitooligosaccharide PAMP derived from fungal cell walls. This result is not surprising because it is well documented that fungal pathogens produce multiple elicitors that induce plant innate immunity. See e.g., Chisholm et al., 2006. Thus, blocking the chitin response pathway would not be expected to completely block all defense responses mounted by the plant against the fungal pathogen. This notion is supported by the observation that chitin-responsive defense genes (e.g., MPK3 and WRKY53) were still induced by the fungal pathogen A. brassicicola in the mutant, albeit to a lower level compared with that in wild-type plants ( FIG. 14 ). The gene induction by the fungal pathogen is monitored by quantitative RT-PCR at different time points after inoculation. Each data point is the average of the relative gene expression (fold change, normalized to actin-2 and relative to the time 0 sample) from three replicates. Error bar=standard error. WT=wild-type Col-0; Mu=the AtLysM RLK1 mutant. This low level expression of some defense genes in the mutant may explain why the mutant was only moderately susceptible to the fungal pathogens as compared to the wild-type plants. Pretreatment of rice plants by chitooligosaccharide has been shown to enhance fungal resistance in rice. Tanabe et al., 2006. It is shown here that pretreatment of wild-type plants with chitooligosaccharides reduced disease symptoms upon inoculation with the fungal pathogen A. brassicicola , as evidenced by reduced lesion size and spore production ( FIGS. 13C , 13 D and 13 E). Pretreatment also inhibited the growth of the bacterial pathogen P. syringae pv. tomato DC3000 ( FIG. 13F ), reflecting a general induction of plant innate immunity. In contrast, similar pretreatment of the AtLysM RLK1 mutant plants did not enhance resistance. These data further support the critical role for AtLysM RLK1 in mediating the perception of chitooligosaccharides by plants. Chitin is present in the cell walls of all true fungi, but not in plants. Fungal pathogens with defects in chitin synthesis are significantly less virulent on susceptible hosts, including both plants and animals. See Bulawa et al., 1995; and Soulie et al., 2006. As disclosed herein, AtLysM RLK1 is likely a receptor for chitin PAMP of fungal pathogen. AtLysM RLK1 is only the third pattern recognition receptor (PRR) identified in plants. The other two PRRs are both leucine-rich repeat receptor-like kinases (LRR RLKs). Nürnberger et al., 2006. Therefore, this finding adds a new class of proteins to the family of plant PRRs. LysM RLK NFR1 and NFR5 Nod signal receptors specifically recognize a lipochitin molecule with a back-bone of 4-5 units of N-acetyl-D-glucosamine. For review, see Stacey et al. 2006. This specificity is supported by the findings that mutations in either of the NFR1 and NFR5 genes in L. japonicus did not block the induction of the selected CRGs in this plant ( FIG. 15 ). In more details, both the wild type (Gifu) and the Nod signal receptor mutants nfr1-1 and nfr5-1 were treated with chitooctaose for 30 minutes at a concentration of 1 μM or with water (as a control). The selected CRGS were detected using semi-quantitative RT-PCR. LjActin-2 was used as an internal control. However, previous results suggested that both the legume NFR genes and AtLysM RLK1 are under negative selection, implying the functional conservation between legume NFR and AtLysM RLK1 genes. Zhang et al., 2007. Perhaps, the discrepancy in substrate specificity lies in the difference in their extracellular LysM domains, since legume NFR proteins have two LysM motifs while AtLysM RLK1 has three. Zhang et al., 2007. To determine whether the AtLysM RLK1 mutation affects other defense-related pathways, such as the salicylic acid (SA) and jasmonic acid/ethylene (JA/ETH) responsive pathways, the AtLysM RLK1 mutant and wild-type plants were treated with SA, methyl jasmonic acid (MeJA), and 1-aminocyclopropane-1-carboxylic acid (ACC), respectively, and expression of the pathway hallmark genes, PR-1 (the SA pathway) and PDF1.2 (the JA/ETH pathway) was examined. Quantitative RT-PCR data demonstrated that both the mutant and wild-type plants showed similar induction of PR-1 by SA and of PDF1.2 by MeJA or ACC, indicating that the mutation did not affect these defense pathways ( FIG. 16 ). In addition, the mutant plants were fully responsive to another typical PAMP, the flagellin-derived peptide flg22 ( FIG. 16 ). Each data point is the average of the relative gene expression (fold change, normalized to actin-2 and relative to the control sample) from three replicates. Error bar=standard error. No statistically significant differences are found between the mutant and wild type in the induction of the above genes. Interestingly, as shown by FIG. 17 , the AtLysM RLK1 mutation does not block the induction of flagellin-responsive genes. Collectively, the data indicate that AtLysM RLK1 is the primary, specific receptor for recognition of the chitooligosaccharide PAMP derived from fungal pathogen cell walls. This recognition is a crucial step in the elicitation of protective innate immunity responses in the plant. Example 4 Forced Expression of Certain LYSM RLK Genes Enhanced Fungal Resistance in Plants Over-expression of one LysM RLK gene, At2g33580, under a strong cauliflower mosaic virus (CMV) 35S promoter in transgenic plants, resulted in enhanced disease resistance. Therefore, this gene may function in a positive way to elevate disease resistance, similar to the mechanism of the At3g21630 gene, as shown in FIG. 5 . Together with the data in Example 3 showing that forced expression of AtLysM RLK1 gene can restore induction of CRGs in a AtLysM RLK1 insertion mutant, these data confirm that the expression of specific LysM RLK genes in transgenic plants may confer enhanced disease resistance. Example 5 Induction of Gene Expression by Chitin or its Derivatives Based on the genome-wide gene expression studies using microarrays, quantitative reverse transcriptase-polymerase chain reaction (qRT-PCR) was conducted to identify over 120 different transcription factors in Arabidopsis thaliana whose expression is enhanced by chitin treatment. Many of these transcription factors are known to be involved in fungal pathogen response. This again shows the correlation of chitin response to disease resistance. Each of these transcription factors is a potential target for genetic manipulation in order to enhance disease resistance. The results of this study are described in greater details in Libault et al., 2007, which is hereby expressly incorporated by reference. Some of the genes disclosed herein, including the LysM RLK genes, the CRGs such as the transcription factors described above, may play a positive role in plant fungal defense. Such genes may be called positive regulators. Transgenic plants may be generated wherein these positive regulators are expressed at an elevated level to increase the expression of transcription factors or other downstream genes. Some of the genes, on the other hand, may inhibit a plant's fungal defense capability. Such genes may be called negative regulators (also called “negative regulatory genes”). Deletion mutants of such genes that play a negative role in fungal defense may be created to obtain plants with enhanced fungal defense capability. Alternatively, dominant negative mutants of the negative regulatory genes may be introduced into a wild-type plant to inhibit the function of negative factors. Host plants may include any plants that may be susceptible to fungal infection, such as Arabidopsis thaliana , soybean, and others. Example 6 LYSM Containing Proteins in Soybean Utilizing the gene sequences from Arabidopsis , as described above, a total of 13 LysM RLK genes were identified in the soybean genome by searching the dbEST sequence database maintained by the Institute of Genomic Research. These 13 soybean LysM RLKs are: GmNFR1α (also referred to as GmNFR1a in this disclosure), GmNFR1β (also referred to as GmNFR1b in this disclosure), GmLYK2, GmLYK3, GmLYK4 (previously known as GmLysM17), GmNFR5α (also referred to as GmNFR5a in this disclosure), GmNFR5β (also referred to as GmNFR1b in this disclosure), GmLYK6 (previously known as GmLysM14), GmLYK7, GmLYK8 (previously known as GmLysM4), GmLYK9 (previously known as GmLysM16), GmLYK10, GmLYK11, and are designated as SEQ ID Nos. 54-66, respectively. In addition, an additional fifteen soybean genes were identified that appear to have a LysM domain, but no associated kinase domain. PCR primers were developed for several of these genes, and their location on the soybean bacterial artificial chromosome (BAC)-based physical map was determined by probing pools of individual BAC clones. In this way, BAC clones encoding the various LysM domain proteins were identified. At this time, twelve BACs have been sequenced and the genomic sequences, including the regulatory regions, have been obtained for several LysM RLK genes. Sequence comparisons between the soybean BAC sequences and other plant species showed examples where gene order (microsynteny) was well conserved. For example, FIG. 18 shows microsynteny between the soybean GmNFR5 and LysM17 (GmLYK4) gene-encoding regions and corresponding regions in poplar (Pt), Lotus japonicus (Lj), and Medicago trancatula (Mt) Arabidopsis thaliana (At) and rice (Os). These regions of microsynteny may be expanded by use of these methods to other plant species. Thus, knowledge of the genomic location in soybean can allow for the identification of the likely functional orthologue in other plant species, or vice versa. In some cases, mapping the gene to the physical map also gave a genetic map location, due to genetic markers associated with the BAC clones. Table 5 shows examples of such regions that are in proximity to LysM RLK encoding regions. The locations of these genes were correlated with known quantitative trait loci (QTLs) associated with fungal resistance, i.e., Sclerotina white mold, Asian soybean rust and sudden death syndrome. In each case, a close correlation existed between the location of the LysM RLK and a known QTL for disease resistance. Thus, mapping of the LysM RLK may aid in the localization of disease resistance QTLs in soybean. The sequence of the LysM RLK gene can also be used to define better genetic markers for fine mapping of the associated QTLs. For instance, soybean mutants may be generated and selected for fungal resistant phenotypes. The close genetic link between certain QTLs and some LysM RLK genes may allow one to use the LysM RLK gene sequences to trace segregation of the QTLs. For example, molecular markers in the form of PCR primers, oligonucleotide probes, single nucleotide polymorphisms, restriction fragment polymorphisms, among others, derived from the DNA sequence of the LYK genes could be very useful in following a specific QTL in a breeding process. TABLE 5Associations of GmLysM-RLKs withknown fungal resistance QTLsGeneticGeneticLinkagepositionSoybean LysM-RLKsmarkerGroup(cM)Sclerotinia sclerotiorum QTLSatt172D1b100.89Sclerotinia sclerotiorum QTLSatt459D1b118.62K411_1D1b119.34GmLysM4, GmLysM26, GmNFR1aA343_2D1b120.97Sclerotinia sclerotiorum QTLSatt143L30.19GmLysM23Sat_388L30.86Sclerotinia sclerotiorum QTLSatt481L54.57GmLysM25Sat_402C2103.33Asian soybean rust QTLSatt460C2117.77Fusarium solani f. sp glycines (SDS)Satt307C2121.27QTL More particularly, all or a fragment of the polynucleotides of the instant disclosure may be used as probes for genetically and physically mapping the genes of which they are a part, and can be further used as markers for traits linked to those genes. Such information may be useful in plant breeding in order to develop lines with desired phenotypes. For example, the instant nucleic acid fragments may be used as restriction fragment length polymorphism (RFLP) markers. Southern blots of restriction-digested plant genomic DNA may be probed with the nucleic acid fragments of the instant disclosure. The resulting banding patterns may then be subjected to genetic analyses using computer programs such as MapMaker (Lander et al. (1987) Genomics 1:174-181) in order to construct a genetic map. In addition, the nucleic acid fragments of the instant disclosure may be used to probe Southern blots containing restriction endonuclease-treated genomic DNAs of a set of individuals representing parent and progeny of a defined genetic cross. Segregation of the DNA polymorphisms is noted and used to calculate the position of the instant nucleic acid sequence in the genetic map previously obtained using this population (Botstein et al. (1980) Am. J. Hum. Genet. 32:314-331). The production and use of plant gene-derived probes for use in genetic mapping is described in Bernatzky and Tanksley (1986) Plant Mol. Biol. Reporter 4:37-41. Numerous publications describe genetic mapping of specific cDNA clones using the methodology outlined above or variations thereof. For example, F2 intercross populations, backcross populations, randomly mated populations, near isogenic lines, and other sets of individuals may be used for mapping. Such methodologies are well known to those skilled in the art. Nucleic acid probes derived from the instant nucleic acid sequences may also be used for physical mapping (i.e., placement of sequences on physical maps; see Hoheisel et al. In: Non mammalian Genomic Analysis: A Practical Guide, Academic press 1996, pp. 319-346, and references cited therein). In another embodiment, nucleic acid probes derived from the instant nucleic acid sequences may be used in direct fluorescence in sits hybridization (FISH) mapping (Trask (1991) Trends Genet. 7:149-154). Although current methods of FISH mapping favor use of large clones ranging from a few Kb to several hundred Kb; see Laan et al. (1995) Genome Res. 5:13-20), improvements in sensitivity may allow performance of FISH mapping using shorter probes. A variety of nucleic acid amplification-based methods of genetic and physical mapping may be carried out using the nucleic acid sequences of the instant disclosure. Examples include allele-specific amplification (Kazazian (1989) J. Lab. Clin. Med. 11:95-96), polymorphism of PCR-amplified fragments (CAPS; Sheffield et al. (1993) Genomics 16:325-332), allele-specific ligation (Landegren et al. (1988) Science 241:1077-1080), nucleotide extension reactions (Sokolov (1990) Nucleic Acid Res. 18:3671), Radiation Hybrid Mapping (Walter et al. (1997) Nat. Genet. 7:22-28) and Happy Mapping (Dear and Cook (1989) Nucleic Acid Res. 17:6795-6807). For these methods, the sequence of a nucleic acid fragment is used to design and produce primer pairs for use in the amplification reaction or in primer extension reactions. The design of such primers is well known to those skilled in the art. In methods employing PCR-based genetic mapping, it may be necessary to identify DNA sequence differences between the parents of the mapping cross in the region corresponding to the instant nucleic acid sequence. This, however, is generally not necessary for mapping methods. Soybean genotypes used for mapping of soybean QTLs for white mold resistance included Corsoy 79 and Dassel. As shown in FIG. 19 , treatment of leaves of these plants, as well as Williams 82 as a control, resulted in strong induction of three of the LysM RLK genes out of a total of six such genes tested. These genes are, therefore, excellent targets for genetic manipulation using the methods demonstrated in Arabidopsis to create soybean plants with decreased disease susceptibility. Finally, as was the case with Arabidopsis , some of the soybean LysM RLK genes are induced upon treatment of soybean with chitin, as confirmed by the results shown in FIG. 20 . Leaves were treated by spraying with chitin (100 μM)+0.2% Tween-20. Example 7 Tissue Specific Expression of LYSM-Containing Proteins in Soybean and Other Plants Other experiments examined the expression of the various LysM domain-containing genes under various conditions. For the six plant species in this study, tissue expression levels of LYK genes have only been reported for M. truncatula (Limpens et al., 2003; Arrighi et al., 2006) and Arabidopsis . Therefore, LYK gene expression was measured using quantitative reverse transcription (RT)-PCR in different tissues of soybean, M. truncatula , and rice plants. More particularly, Soybean, M. truncatula , and rice plants were grown in the greenhouse at 28° C. to 30° C. with a 16-h light/8-h dark cycle. Roots and vegetative tissues were sampled about 3 weeks after planting and flowers were sampled about 3 months after planting. Total RNAs were extracted using Trizol (Invitrogen) followed by Turbo DNase (Ambion) treatment to remove genomic DNA contamination. First-strand cDNAs were synthesized using Moloney murine leukemia virus reverse transcriptase (Promega). Quantitative RT-PCR was performed using a 7500 real-time PCR system (Applied Biosystems) following standard procedures. The primer sequences are listed in Table 6. q-RT-PCR of GmSubi2, MtActin2, OsEF1α are used to normalize the expression data of all of the other genes in the respective species. TABLE 6Plant LYK primers for qRT-PCR (5′ to 3′ from left to right)SEQSEQGenesForwardID No.ReverseID No.GmSubi2AGCTATTCGCAGTTCCCAAAT96CAGAGACGAACCTTGAGGAGA97GmNFR1aAAGAACATCCGTGGAAAGGTT98AATGTTCCCACAAGACGAGTG99GmNFR1bTGACATATGCCAATCTCACCA100GTGACATTAACCGTGGCATTT101GmLYK2GATCCACAACAACGTCCAAAT102ATGGAAGCAATATCCCAATCC103GmLYK3TAACGGTGACGTTGATGTTCA104GTTGTCGAGGTTGATTTCTCG105GmLYK4AGATGTGCTTGTCCCACAAAG106CAGAATCACCCCAGTTTACCA107GmNFR5aACCGCTCTTTTGCCAATATCT108AACGGGGTTTAAATCCATCAC109GmNFR5bCATGGCCAGAACTTTTACCAA110GTTGTCATGGCTTTCCTACCA111GmLYK9TGATCTCCTACGTCGTCCAAC112GCGTCAATGATGGACTGTTCT113GmLYK10CCTCTCTCTCCAACCTCACCT114CTGATCCTGGGAGAGGAACTC115GmLYK11TTCGGTTCCTGGTGAGTCTTA116TCATGGGGTACATGAGCTTTC117MtActin2TGGCATCACTCAGTACCTTTCAACAG118ACCCAAAGCATCAAATAATAAGTCAACC119MtLYK1CATGAGCATTCAGTGCCTGT120TGCAGAATCAGTAAGCCTGGT121MtLYK3TGCTAAGGGTTCAGCTGTTGGTA122AAATGCCCTAGAAGTTTGTGGAAG123MtLYK4CGCAAGATGGATGTGTATGC124CATGGCTCTCGAACTCGTTT125MtLYK9CACTCATATTCTTTTCTGCCACCCA126TGCAATGGATTGAGGACTGGTGT127MtLYK10GGAAATGGAGAAATGGCAAA128CGCCTTGACCAAGAAACCTA129MtLYK11GGCATTGATGGGTCAGAACT130TGCAAAGAGGATCACACTGC131MtLYK12CTCTTCTTCTTCTTCTTCGTCAGCA132GGTATGCTTGGCATGTTTGAGTTT133MtLYK13GGTTGTTCTCGGAATCTTCG134ATGCATGTATTGCAGACCGA135OsEF1αTTTCACTCTTGGTGTGAAGCAGAT136GACTTCCTTCACGATTTCATCGTAA137OsLYK1ATGGCGATATGGGTGACATT138TCCACATGGAAGGTGAATGA139OsLYK2GTTCTTGCGTCTGGTGCTCT140CTCCTTATCCGGAGCCAAC141OsLYK3ATGGAGGAGGTGTTCGTCAC142CCGAGGACCATAGAAGCTGA143OsLYK4CATGGTCACCTACCTCGTCA144TATGATGGAGCTCTCGGTGA145OsLYK5GTTCATCGACAAACCGATCA146TAATACGAGCTGCCGAGCTT147OsLYK6GTGACGAGGAGAATGGAGGA148CTCGATCAGCTTCACCATCA149 The data agree well with previous results on MtLYK expression levels (Limpens et al., 2003; Arrighi et al., 2006). It was also found that plant LYK expression was generally tissue specific and that most plant LYK genes were expressed predominantly in the root in soybean ( FIG. 21A ), M. truncatula ( FIG. 21B ), rice ( FIG. 21C ), L. japonicus (Madsen et al., 2003; Radutoiu et al., 2003), and Arabidopsis , although a few genes were expressed in stems and leaves. Expression levels of each LYK gene were displayed in artificial scales relative to particular housekeeping genes. Data were collected from three biological replicates. Error bars represent SDs. As predicted from their orthologous relationships (Zhang et al, 2007), GmNFR1, GmNFR1, MtLYK3, and LjNFR1 (Radutoiu et al., 2003) showed similar patterns of root-specific expression. Similarly, GmNFR5, GmNFR5, MtLYK13, OsLYK5, and LjNFR5 (Madsen et al., 2003) showed root-specific expression. These results are reasonable, from a biological perspective, because these receptors need to efficiently contact Nod factors secreted by soilborne symbiotic bacteria. Additionally, the following sets of orthologous genes also exhibit similar expression patterns: GmLYK4 and MtLYK12; GmLYK10 and AtLYK2; GmLYK8 (data not shown); and AtLYK5. Interestingly, several duplicated genes displayed different expression patterns. For example, GmLYK2 and MtLYK11 expression is dramatically different from duplicated partners, GmNFR1 and MtLYK10, respectively. MtLYK9, paralogous to MtLYK13, is expressed differently from the latter. These data suggest the functional diversification of LYK genes after duplications. In light of the detailed description of the invention and the examples presented above, it can be appreciated that the several aspects of the invention are achieved. It is to be understood that the present invention has been described in detail by way of illustration and example in order to acquaint others skilled in the art with the invention, its principles, and its practical application. Particular formulations and processes of the present invention are not limited to the descriptions of the specific embodiments presented, but rather the descriptions and examples should be viewed in terms of the claims that follow and their equivalents. While some of the examples and descriptions above include some conclusions about the way the invention may function, the inventors do not intend to be bound by those conclusions and functions, but put them forth only as possible explanations. Moreover, while most of the examples provided use Arabidopsis or soybean as the host plant, it is to be understood that the transgenic and plant breeding procedures described herein are broadly applicable to other plant species as well. These other plants may include but are not limited to: Rice, Wheat, Barley, poplar, M. truncatula, L. japonicus and many other crops, vegetables, and trees. Although transformation and breeding procedures differ from one plant species to another, it is within the skills of an ordinary artisan to modify the teaching of this disclosure for use in other plants. The methodology for conferring fungal resistance upon a plant or for selecting for a fungal resistant plant may be applicable to a broad spectrum of fungi, such as Fusarium , Powdery mildew, and the variety of fungi that cause soybean rust, among others. It is to be further understood that the specific embodiments of the present invention as set forth are not intended as being exhaustive or limiting of the invention, and that many alternatives, modifications, and variations will be apparent to those of ordinary skill in the art in light of the foregoing examples and detailed description. Accordingly, this invention is intended to embrace all such alternatives, modifications, and variations that fall within the spirit and scope of the following claims. REFERENCES Full citations of references that are not fully cited in the text are listed below. All references, including those that are not listed below but are fully cited in the text, are hereby incorporated by reference to the same extent as though fully disclosed herein: 1. Arrighi J, Barre A, Ben Amor B, Bersoult A, Soriano L, Mirabella R, Carvalho-Niebel F, Journet E, Gherardi M, Huguet T, et al (2006) The Medicago truncatula lysine motif-receptor-like kinase gene family includes NFP and new nodule-expressed genes. Plant Physiol 142: 265-279.2. Bulawa, C. E., D. W. Miller, L. K. Henry, J. M. Becker, Proc. Natl. Acad. Sci. U.S.A. 92, 10570-10574 (1995).3. Chisholm, S. T., G. Coaker, B. Day, B. J. Staskawicz, Cell 124, 803-814 (2006).4. Clamp M, Cuff J, Searle S M, Barton G J (2004) The Jalview Java alignment editor. 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identity to a LysM receptor kinase family gene having the sequence of SEQ ID No. 7, wherein the transgenic plant is derived from a host plant that is susceptible to fungal infection, and wherein the expression of said transgene renders the transgenic plant less susceptible to fungal infection as compared to said host plant."],"number":1,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant according to claim 1, wherein the transgene has at least 99% sequence identity to a LysM receptor kinase family gene having the sequence of SEQ ID No. 7."],"number":2,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant according to claim 1, wherein the transgene has 100% sequence identity to a LysM receptor kinase family gene having the sequence of SEQ ID No. 7."],"number":3,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant according to claim 1, wherein the plant is soybean."],"number":4,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant according to claim 1, wherein the plant is Arabidopsis thaliana. "],"number":5,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant according to claim 1 wherein the LysM receptor kinase family gene encodes a functional LysM receptor kinase."],"number":6,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant according to claim 1, further comprising at least one regulatory sequence operably linked to said LysM receptor kinase family gene, said regulatory sequence controlling the expression level of the LysM receptor kinase family gene."],"number":7,"annotation":false,"claim":true,"title":false},{"lines":["A transgenic plant comprising a LysM receptor kinase family gene having at least one mutation, said mutated gene being derived from an endogenous wild-type LysM receptor kinase family gene having at least 98% sequence identity to SEQ ID No. 7."],"number":8,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant of claim 8, wherein the mutated LysM receptor kinase family gene encodes a LysM receptor kinase with a mutation selected from the group consisting of amino acid substitution, deletion and insertion."],"number":9,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant of claim 8, wherein the mutation of the LysM receptor kinase family gene alters the expression level of the encoded LysM receptor kinase in said plant."],"number":10,"annotation":false,"claim":true,"title":false},{"lines":["A method for protecting a plant from fungal infection, comprising the step of introducing into said plant a transgene, said transgene having at least 95% sequence identity to a LysM receptor kinase family gene having the sequence of SEQ ID No. 7."],"number":11,"annotation":false,"claim":true,"title":false},{"lines":["The method of claim 11, further comprising the step of expressing a LysM receptor kinase encoded by said transgene."],"number":12,"annotation":false,"claim":true,"title":false},{"lines":["The method of claim 11, wherein the LysM receptor kinase family gene is at least 98% identical to SEQ ID No. 7."],"number":13,"annotation":false,"claim":true,"title":false},{"lines":["A method for protecting a plant from fungal infection, comprising the step of generating in said plant at least one mutation in a LysM receptor kinase family gene, said LysM receptor kinase family gene being endogenous to said plant, wherein said LysM receptor kinase family gene has at least 95% sequence identity to the polynucleotide having the sequence of SEQ ID No. 7."],"number":14,"annotation":false,"claim":true,"title":false},{"lines":["The method according to claim 14 wherein the plant is soybean."],"number":15,"annotation":false,"claim":true,"title":false},{"lines":["The method according to claim 14 wherein the plant is Arabidopsis thaliana. "],"number":16,"annotation":false,"claim":true,"title":false}]}},"filters":{"npl":[],"notNpl":[],"applicant":[],"notApplicant":[],"inventor":[],"notInventor":[],"owner":[],"notOwner":[],"tags":[],"dates":[],"types":[],"notTypes":[],"j":[],"notJ":[],"fj":[],"notFj":[],"classIpcr":[],"notClassIpcr":[],"classNat":[],"notClassNat":[],"classCpc":[],"notClassCpc":[],"so":[],"notSo":[],"sat":[]},"sequenceFilters":{"s":"SEQIDNO","d":"ASCENDING","p":0,"n":10,"sp":[],"si":[],"len":[],"t":[],"loc":[]}}