Methods And Compositions Based On Shiga Toxin Type 1 Protein

Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
20 sequences found in this patent (in total)

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Displaying 1 - 10 of 20 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
6
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
2
Length
8
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:63021531
      AAY26448
      1 of 11 hits reported for synthetic construct.
    • Hit length
      355 aa
    • E Value
      1.76E2
    • BLAST Score
      28.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAY26448
      2.25% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • Expression vector pVT2

    Expression vector pVT2

    • Public DB hit
      GI:41411190
      CAF22054
    • Hit length
      132 aa
    • E Value
      4.62E2
    • BLAST Score
      26.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CAF22054
      6.06% cov
    • Alignment Length
      8 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:18147068
      BAB83023
    • Hit length
      89 aa
    • E Value
      4.79E2
    • BLAST Score
      26.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      BAB83023
      8.99% cov
    • Alignment Length
      8 aa
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
3
Length
8
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15802645
      NP_288672
      1 of 2 hits reported for Escherichia coli O157:H7 str. EDL933.
    • Hit length
      89 aa
    • E Value
      1.16E2
    • BLAST Score
      29.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NP_288672
      8.99% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:148750794
      ABR10019
      1 of 9 hits reported for Escherichia coli.
    • Hit length
      89 aa
    • E Value
      1.16E2
    • BLAST Score
      29.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ABR10019
      8.99% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:63021531
      AAY26448
      1 of 8 hits reported for synthetic construct.
    • Hit length
      355 aa
    • E Value
      1.16E2
    • BLAST Score
      29.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAY26448
      2.25% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:226070
      1410186B
      1 of 2 hits reported for Shigella dysenteriae.
    • Hit length
      89 aa
    • E Value
      1.16E2
    • BLAST Score
      29.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      1410186B
      8.99% cov
    • Alignment Length
      8 aa
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:32400303
      BAC78640
    • Hit length
      89 aa
    • E Value
      1.2E2
    • BLAST Score
      29.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      BAC78640
      8.99% cov
    • Alignment Length
      8 aa
  • Enterobacteria phage Lahn1

    Enterobacteria phage Lahn1

    • Public DB hit
      GI:23343492
      CAC95081
    • Hit length
      86 aa
    • E Value
      1.56E2
    • BLAST Score
      28.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CAC95081
      9.3% cov
    • Alignment Length
      8 aa
  • Escherichia coli O157:H7 str. TW14588

    Escherichia coli O157:H7 str. TW14588

    • Public DB hit
      GI:217327858
      ZP_03443941
    • Hit length
      61 aa
    • E Value
      2.49E2
    • BLAST Score
      28.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ZP_03443941
      13.11% cov
    • Alignment Length
      8 aa
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
4
Length
71
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • Expression vector pVT1

    Expression vector pVT1

    • Public DB hit
      GI:41411188
      CAF22053
    • Hit length
      132 aa
    • E Value
      4.88E-29
    • BLAST Score
      131.7 bits
    • Similarity
      95.59%
    • Coverage
      95.77%
    • Alignment (schematic)

      SEQ ID NO 4
      95.77% cov
      CAF22053
      51.52% cov
    • Alignment Length
      68 aa
    • CIGAR string
      8MNM2N3MN21MN2MN3MN18MN2MNM3H mismatches: 9 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15802645
      NP_288672
    • Hit length
      89 aa
    • E Value
      5.34E-29
    • BLAST Score
      131.3 bits
    • Similarity
      95.59%
    • Coverage
      95.77%
    • Alignment (schematic)

      SEQ ID NO 4
      95.77% cov
      NP_288672
      76.4% cov
    • Alignment Length
      68 aa
    • CIGAR string
      8MNM2N3MN21MN2MN3MN18MN2MNM3H mismatches: 9 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:32400303
      BAC78640
    • Hit length
      89 aa
    • E Value
      5.76E-29
    • BLAST Score
      131.3 bits
    • Similarity
      95.59%
    • Coverage
      95.77%
    • Alignment (schematic)

      SEQ ID NO 4
      95.77% cov
      BAC78640
      76.4% cov
    • Alignment Length
      68 aa
    • CIGAR string
      8MNM2N3MN21MN2MN3MN18MN2MNM3H mismatches: 9 - insertions: 0 - deletions: 0
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:156788950
      ABU96047
      1 of 2 hits reported for Shigella dysenteriae.
    • Hit length
      86 aa
    • E Value
      6.42E-29
    • BLAST Score
      131.3 bits
    • Similarity
      95.59%
    • Coverage
      95.77%
    • Alignment (schematic)

      SEQ ID NO 4
      95.77% cov
      ABU96047
      79.07% cov
    • Alignment Length
      68 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:25986861
      AAM88573
      1 of 12 hits reported for Escherichia coli.
    • Hit length
      85 aa
    • E Value
      7.22E-29
    • BLAST Score
      131 bits
    • Similarity
      95.59%
    • Coverage
      95.77%
    • Alignment (schematic)

      SEQ ID NO 4
      95.77% cov
      AAM88573
      80% cov
    • Alignment Length
      68 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:63021523
      AAY26444
      1 of 4 hits reported for synthetic construct.
    • Hit length
      215 aa
    • E Value
      7.91E-29
    • BLAST Score
      131 bits
    • Similarity
      94.2%
    • Coverage
      97.18%
    • Alignment (schematic)

      SEQ ID NO 4
      97.18% cov
      AAY26444
      32.09% cov
    • Alignment Length
      69 aa
  • Enterobacteria phage Lahn1

    Enterobacteria phage Lahn1

    • Public DB hit
      GI:23343492
      CAC95081
    • Hit length
      86 aa
    • E Value
      1.57E-28
    • BLAST Score
      129.8 bits
    • Similarity
      96.97%
    • Coverage
      92.96%
    • Alignment (schematic)

      SEQ ID NO 4
      92.96% cov
      CAC95081
      76.74% cov
    • Alignment Length
      66 aa
  • Phage h30

    Phage h30

    • Public DB hit
      GI:10120878
      1C48_A
    • Hit length
      69 aa
    • E Value
      1.76E-27
    • BLAST Score
      126.3 bits
    • Similarity
      94.12%
    • Coverage
      95.77%
    • Alignment (schematic)

      SEQ ID NO 4
      95.77% cov
      1C48_A
      98.55% cov
    • Alignment Length
      68 aa
  • Expression vector pVT2

    Expression vector pVT2

    • Public DB hit
      GI:41411190
      CAF22054
    • Hit length
      132 aa
    • E Value
      2.17E-27
    • BLAST Score
      126.3 bits
    • Similarity
      94.12%
    • Coverage
      95.77%
    • Alignment (schematic)

      SEQ ID NO 4
      95.77% cov
      CAF22054
      51.52% cov
    • Alignment Length
      68 aa
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
5
Length
1,227
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Shiga toxin
Determined organism
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:189345241
      EU700490
      1 of 9 hits reported for Escherichia coli.
    • Hit length
      1,349 bp
    • E Value
      0E0
    • BLAST Score
      2,267 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EU700490
      90.96% cov
    • Alignment Length
      1,227 bp
    • CIGAR string
      1227M mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:7239813
      AF034975
      1 of 3 hits reported for Enterobacteria phage H-19B.
    • Hit length
      18,362 bp
    • E Value
      0E0
    • BLAST Score
      2,267 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AF034975
      6.68% cov
    • Alignment Length
      1,227 bp
    • CIGAR string
      1227M mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacteria phage 933J

    Enterobacteria phage 933J

    • Public DB hit
      GI:215072
      M19473
    • Hit length
      1,499 bp
    • E Value
      0E0
    • BLAST Score
      2,267 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      M19473
      81.85% cov
    • Alignment Length
      1,227 bp
    • CIGAR string
      1227M mismatches: 0 - insertions: 0 - deletions: 0
  • Phage h30

    Phage h30

    • Public DB hit
      GI:215049
      M23980
    • Hit length
      1,905 bp
    • E Value
      0E0
    • BLAST Score
      2,267 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      M23980
      64.41% cov
    • Alignment Length
      1,227 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP010958
      0.02% cov
    • Alignment Length
      1,227 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP010953
      0.02% cov
    • Alignment Length
      1,227 bp
  • Enterobacteria phage YYZ-2008

    Enterobacteria phage YYZ-2008

    • Public DB hit
      GI:208970794
      FJ184280
    • Hit length
      54,896 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FJ184280
      2.24% cov
    • Alignment Length
      1,227 bp
  • Stx1-converting phage phi-O153

    Stx1-converting phage phi-O153

    • Public DB hit
      GI:56682761
      AY838795
    • Hit length
      7,333 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY838795
      16.73% cov
    • Alignment Length
      1,227 bp
  • Enterobacteria phage BP-4795

    Enterobacteria phage BP-4795

    • Public DB hit
      GI:49523585
      AJ556162
    • Hit length
      57,930 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AJ556162
      2.12% cov
    • Alignment Length
      1,227 bp
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:9955818
      AJ271153
      1 of 3 hits reported for Shigella dysenteriae.
    • Hit length
      6,014 bp
    • E Value
      0E0
    • BLAST Score
      2,259.6 bits
    • Similarity
      99.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AJ271153
      20.4% cov
    • Alignment Length
      1,227 bp
  • Shigella dysenteriae Sd197

    Shigella dysenteriae Sd197

    • Public DB hit
      GI:81239530
      CP000034
    • Hit length
      4,369,232 bp
    • E Value
      0E0
    • BLAST Score
      2,250.3 bits
    • Similarity
      99.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000034
      0.03% cov
    • Alignment Length
      1,227 bp
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:118201523
      EF079675
    • Hit length
      1,227 bp
    • E Value
      0E0
    • BLAST Score
      2,244.8 bits
    • Similarity
      99.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EF079675
      100% cov
    • Alignment Length
      1,227 bp
  • Escherichia Stx1 converting phage

    Escherichia Stx1 converting phage

    • Public DB hit
      GI:32128012
      AP005153
    • Hit length
      59,866 bp
    • E Value
      0E0
    • BLAST Score
      2,244.8 bits
    • Similarity
      99.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP005153
      2.05% cov
    • Alignment Length
      1,227 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
6
Length
948
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Shiga toxin
Determined organism
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:189345241
      EU700490
      1 of 9 hits reported for Escherichia coli.
    • Hit length
      1,349 bp
    • E Value
      0E0
    • BLAST Score
      1,751.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU700490
      70.27% cov
    • Alignment Length
      948 bp
    • CIGAR string
      948M mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:7239813
      AF034975
      1 of 3 hits reported for Enterobacteria phage H-19B.
    • Hit length
      18,362 bp
    • E Value
      0E0
    • BLAST Score
      1,751.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AF034975
      5.16% cov
    • Alignment Length
      948 bp
    • CIGAR string
      948M mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacteria phage 933J

    Enterobacteria phage 933J

    • Public DB hit
      GI:215072
      M19473
    • Hit length
      1,499 bp
    • E Value
      0E0
    • BLAST Score
      1,751.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      M19473
      63.24% cov
    • Alignment Length
      948 bp
    • CIGAR string
      948M mismatches: 0 - insertions: 0 - deletions: 0
  • Phage h30

    Phage h30

    • Public DB hit
      GI:215049
      M23980
    • Hit length
      1,905 bp
    • E Value
      0E0
    • BLAST Score
      1,751.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      M23980
      49.76% cov
    • Alignment Length
      948 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AP010958
      0.02% cov
    • Alignment Length
      948 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AP010953
      0.02% cov
    • Alignment Length
      948 bp
  • Enterobacteria phage YYZ-2008

    Enterobacteria phage YYZ-2008

    • Public DB hit
      GI:208970794
      FJ184280
    • Hit length
      54,896 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FJ184280
      1.73% cov
    • Alignment Length
      948 bp
  • Stx1-converting phage phi-O153

    Stx1-converting phage phi-O153

    • Public DB hit
      GI:56682761
      AY838795
    • Hit length
      7,333 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY838795
      12.93% cov
    • Alignment Length
      948 bp
  • Enterobacteria phage Lahn1

    Enterobacteria phage Lahn1

    • Public DB hit
      GI:23343476
      AJ413275
    • Hit length
      6,921 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AJ413275
      13.7% cov
    • Alignment Length
      948 bp
  • Enterobacteria phage BP-4795

    Enterobacteria phage BP-4795

    • Public DB hit
      GI:49523585
      AJ556162
    • Hit length
      57,930 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AJ556162
      1.64% cov
    • Alignment Length
      948 bp
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:9955818
      AJ271153
      1 of 2 hits reported for Shigella dysenteriae.
    • Hit length
      6,014 bp
    • E Value
      0E0
    • BLAST Score
      1,744.4 bits
    • Similarity
      99.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AJ271153
      15.76% cov
    • Alignment Length
      948 bp
  • Shigella dysenteriae Sd197

    Shigella dysenteriae Sd197

    • Public DB hit
      GI:81239530
      CP000034
    • Hit length
      4,369,232 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP000034
      0.02% cov
    • Alignment Length
      948 bp
  • Shigella phage 7888

    Shigella phage 7888

    • Public DB hit
      GI:10799908
      AJ279086
    • Hit length
      8,053 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AJ279086
      11.77% cov
    • Alignment Length
      948 bp
  • Shigella sonnei

    Shigella sonnei

    • Public DB hit
      GI:4454334
      AJ132761
    • Hit length
      1,362 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AJ132761
      69.6% cov
    • Alignment Length
      948 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
7
Length
270
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Shiga toxin
Determined organism
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      3.58E-138
    • BLAST Score
      499.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AP010960
      0.01% cov
    • Alignment Length
      270 bp
    • CIGAR string
      270M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      3.58E-138
    • BLAST Score
      499.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AP010958
      0% cov
    • Alignment Length
      270 bp
    • CIGAR string
      270M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      3.58E-138
    • BLAST Score
      499.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AP010953
      0% cov
    • Alignment Length
      270 bp
    • CIGAR string
      270M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:255760581
      GQ429159
      1 of 21 hits reported for Escherichia coli.
    • Hit length
      1,227 bp
    • E Value
      3.58E-138
    • BLAST Score
      499.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      GQ429159
      22% cov
    • Alignment Length
      270 bp
  • Enterobacteria phage YYZ-2008

    Enterobacteria phage YYZ-2008

    • Public DB hit
      GI:208970794
      FJ184280
    • Hit length
      54,896 bp
    • E Value
      3.58E-138
    • BLAST Score
      499.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      FJ184280
      0.49% cov
    • Alignment Length
      270 bp
Occurrence
24 times in PatSeqDB
Tools
SEQ ID NO
8
Length
315
Sequence Type
peptide
Locations
Undetermined
Declared organism
Shiga toxin
Determined organism
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:134536
      P08026
    • Hit length
      315 aa
    • E Value
      2.11E-180
    • BLAST Score
      636.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      P08026
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      315M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15802646
      NP_288673
    • Hit length
      315 aa
    • E Value
      3.31E-180
    • BLAST Score
      636 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_288673
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      66MN248M mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:295882027
      ADG56725
      1 of 3 hits reported for Shigella dysenteriae.
    • Hit length
      318 aa
    • E Value
      3.75E-180
    • BLAST Score
      635.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ADG56725
      99.06% cov
    • Alignment Length
      315 aa
    • CIGAR string
      66MN248M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:260854747
      YP_003228638
    • Hit length
      318 aa
    • E Value
      3.97E-180
    • BLAST Score
      635.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_003228638
      99.06% cov
    • Alignment Length
      315 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:535055
      CAA85368
      1 of 13 hits reported for Escherichia coli.
    • Hit length
      315 aa
    • E Value
      1.68E-179
    • BLAST Score
      633.6 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CAA85368
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:32400302
      BAC78639
      1 of 2 hits reported for Escherichia coli O157:H7.
    • Hit length
      315 aa
    • E Value
      3.17E-179
    • BLAST Score
      632.5 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      BAC78639
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O111:NM

    Escherichia coli O111:NM

    • Public DB hit
      GI:108743114
      CAJ76690
      1 of 2 hits reported for Escherichia coli O111:NM.
    • Hit length
      315 aa
    • E Value
      1.13E-178
    • BLAST Score
      630.9 bits
    • Similarity
      99.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CAJ76690
      100% cov
    • Alignment Length
      315 aa
Occurrence
28 times in PatSeqDB
Tools
SEQ ID NO
9
Length
89
Sequence Type
peptide
Locations
Drawings
Declared organism
Shiga toxin
Determined organism
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15802645
      NP_288672
    • Hit length
      89 aa
    • E Value
      5.97E-45
    • BLAST Score
      184.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_288672
      100% cov
    • Alignment Length
      89 aa
    • CIGAR string
      89M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:148750794
      ABR10019
      1 of 14 hits reported for Escherichia coli.
    • Hit length
      89 aa
    • E Value
      1.24E-44
    • BLAST Score
      183.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ABR10019
      100% cov
    • Alignment Length
      89 aa
    • CIGAR string
      38MN50M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:32400303
      BAC78640
    • Hit length
      89 aa
    • E Value
      2.34E-44
    • BLAST Score
      182.6 bits
    • Similarity
      98.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      BAC78640
      100% cov
    • Alignment Length
      89 aa
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:226070
      1410186B
      1 of 2 hits reported for Shigella dysenteriae.
    • Hit length
      89 aa
    • E Value
      4.69E-44
    • BLAST Score
      181.4 bits
    • Similarity
      98.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      1410186B
      100% cov
    • Alignment Length
      89 aa
  • Enterobacteria phage Lahn1

    Enterobacteria phage Lahn1

    • Public DB hit
      GI:23343492
      CAC95081
    • Hit length
      86 aa
    • E Value
      6.07E-43
    • BLAST Score
      177.9 bits
    • Similarity
      100%
    • Coverage
      96.63%
    • Alignment (schematic)

      SEQ ID NO 9
      96.63% cov
      CAC95081
      100% cov
    • Alignment Length
      86 aa
  • Expression vector pVT1

    Expression vector pVT1

    • Public DB hit
      GI:41411188
      CAF22053
    • Hit length
      132 aa
    • E Value
      2.22E-35
    • BLAST Score
      152.9 bits
    • Similarity
      78.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CAF22053
      80.3% cov
    • Alignment Length
      106 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:63021523
      AAY26444
      1 of 3 hits reported for synthetic construct.
    • Hit length
      215 aa
    • E Value
      2.71E-35
    • BLAST Score
      152.5 bits
    • Similarity
      94.67%
    • Coverage
      84.27%
    • Alignment (schematic)

      SEQ ID NO 9
      84.27% cov
      AAY26444
      34.88% cov
    • Alignment Length
      75 aa
  • Expression vector pVT2

    Expression vector pVT2

    • Public DB hit
      GI:41411190
      CAF22054
    • Hit length
      132 aa
    • E Value
      1.01E-33
    • BLAST Score
      147.1 bits
    • Similarity
      77.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CAF22054
      80.3% cov
    • Alignment Length
      106 aa
Occurrence
252 times in PatSeqDB
Tools
SEQ ID NO
10
Length
1,241
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Shiga toxin
Determined organism
  • Enterobacteria phage VT2phi_272

    Enterobacteria phage VT2phi_272

    • Public DB hit
      GI:315274269
      HQ424691
    • Hit length
      65,955 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      HQ424691
      1.88% cov
    • Alignment Length
      1,241 bp
    • CIGAR string
      1241M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP010958
      0.02% cov
    • Alignment Length
      1,241 bp
    • CIGAR string
      1241M mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacteria phage Min27

    Enterobacteria phage Min27

    • Public DB hit
      GI:163955703
      EU311208
    • Hit length
      63,395 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU311208
      1.96% cov
    • Alignment Length
      1,241 bp
    • CIGAR string
      1241M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:148750702
      EF441617
      1 of 14 hits reported for Escherichia coli.
    • Hit length
      1,241 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EF441617
      100% cov
    • Alignment Length
      1,241 bp
  • Stx2-converting phage 86

    Stx2-converting phage 86

    • Public DB hit
      GI:115500802
      AB255436
    • Hit length
      60,238 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AB255436
      2.06% cov
    • Alignment Length
      1,241 bp
  • Escherichia coli O111:NM

    Escherichia coli O111:NM

    • Public DB hit
      GI:108743119
      AM230664
    • Hit length
      1,262 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AM230664
      98.34% cov
    • Alignment Length
      1,241 bp
  • Enterobacteria phage SC370

    Enterobacteria phage SC370

    • Public DB hit
      GI:24415899
      AF548457
    • Hit length
      4,188 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AF548457
      29.63% cov
    • Alignment Length
      1,241 bp
  • Enterobacteria phage LC159

    Enterobacteria phage LC159

    • Public DB hit
      GI:27545499
      AF548456
    • Hit length
      5,812 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AF548456
      21.35% cov
    • Alignment Length
      1,241 bp
  • Stx2 converting phage II

    Stx2 converting phage II

    • Public DB hit
      GI:32128180
      AP005154
    • Hit length
      62,706 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP005154
      1.98% cov
    • Alignment Length
      1,241 bp
  • Escherichia coli O157:H7 str. Sakai

    Escherichia coli O157:H7 str. Sakai

    • Public DB hit
      GI:47118301
      BA000007
    • Hit length
      5,498,450 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      BA000007
      0.02% cov
    • Alignment Length
      1,241 bp
  • Enterobacteria phage 933W

    Enterobacteria phage 933W

    • Public DB hit
      GI:4499783
      Y10775
      1 of 2 hits reported for Enterobacteria phage 933W.
    • Hit length
      12,168 bp
    • E Value
      0E0
    • BLAST Score
      2,292.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      Y10775
      10.2% cov
    • Alignment Length
      1,241 bp
Occurrence
29 times in PatSeqDB
Tools

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