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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
4 sequences found in this patent (in total)

Displaying 4 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,985
Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary

Declared organism:
Artificial

Determined organism:
  • Hepatitis C virus subtype 1b

    Hepatitis C virus subtype 1b

    • Public DB hit
      GI:12831193
      AAK08509
      1 of 17 hits reported for Hepatitis C virus subtype 1b.
    • Hit length
      3,010 aa
    • E Value
      0E0
    • BLAST Score
      4,028.4 bits
    • Similarity
      99.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AAK08509
      65.95% cov
    • Alignment Length
      1,985 aa
    • CIGAR string
      N469MN203MN12MN409MN80MN713MN6MN7MN5MN10MN8MN2M2N4MN2MN10M2NMN6M2N5M2NMN8M mismatches: 24 - insertions: 0 - deletions: 0
  • Hepatitis C virus (isolate BK)

    Hepatitis C virus (isolate BK)

    • Public DB hit
      GI:130458
      P26663
    • Hit length
      3,010 aa
    • E Value
      0E0
    • BLAST Score
      4,022.6 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      P26663
      65.95% cov
    • Alignment Length
      1,985 aa
    • CIGAR string
      N65MN19M2N59MN322MN203MN422MN80MN713MN6MN7MN5MN10MN8MN2MN5MN2MN10M2NMN6M2N5M2NMN8M mismatches: 26 - insertions: 0 - deletions: 0
  • Hepatitis C virus

    Hepatitis C virus

    • Public DB hit
      GI:31980453
      BAC77767
      1 of 6 hits reported for Hepatitis C virus.
    • Hit length
      1,984 aa
    • E Value
      0E0
    • BLAST Score
      3,825.8 bits
    • Similarity
      97.93%
    • Coverage
      99.95%
    • Alignment (schematic)

      SEQ ID NO 1
      99.95% cov
      BAC77767
      100% cov
    • Alignment Length
      1,984 aa
    • CIGAR string
      1H25MN21MN73MN73MN51MN16MN33MN54MN5MN18MN3MN19MN66MN147MN46MN2M2N4MN37MN16MN3MN45MN196MN6MN14MNMN42MN40MN14MN12MN4MN11MN13MN30MN3MN15MN31MN25M2N3MNMN16MN16MN14MN4MN16MN11MN2M2N5MN3MN82M2N50MN32MN6MN46MN21MN5MN4MN35MN61MN134MN12MN34MN6MN3MN3MN5MN19MN2MN5MN2MN10M2NMN6M2N5M2NMN8M mismatches: 81 - insertions: 0 - deletions: 0
  • Hepatitis C virus (isolate HC-JT)

    Hepatitis C virus (isolate HC-JT)

    • Public DB hit
      GI:266820
      Q00269
    • Hit length
      3,010 aa
    • E Value
      0E0
    • BLAST Score
      3,805.4 bits
    • Similarity
      98.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      Q00269
      65.95% cov
    • Alignment Length
      1,985 aa
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
1,986
Type
peptide
Locations
Claims, Drawings, Summary

Declared organism:
Artificial

Determined organism:
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:6010582
      AAF01179
      1 of 2 hits reported for synthetic construct.
    • Hit length
      3,015 aa
    • E Value
      0E0
    • BLAST Score
      4,066.5 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAF01179
      65.87% cov
    • Alignment Length
      1,986 aa
    • CIGAR string
      N175MN1001MN807M mismatches: 3 - insertions: 0 - deletions: 0
  • Hepatitis C virus

    Hepatitis C virus

    • Public DB hit
      GI:22129793
      NP_671491
      1 of 2 hits reported for Hepatitis C virus.
    • Hit length
      3,011 aa
    • E Value
      0E0
    • BLAST Score
      4,060.8 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_671491
      65.96% cov
    • Alignment Length
      1,986 aa
    • CIGAR string
      N715MN461MN807M mismatches: 3 - insertions: 0 - deletions: 0
  • Hepatitis C virus (isolate H77)

    Hepatitis C virus (isolate H77)

    • Public DB hit
      GI:2327071
      AAB67036
      1 of 3 hits reported for Hepatitis C virus (isolate H77).
    • Hit length
      3,011 aa
    • E Value
      0E0
    • BLAST Score
      4,060.8 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAB67036
      65.96% cov
    • Alignment Length
      1,986 aa
  • Hepatitis C virus subtype 1a

    Hepatitis C virus subtype 1a

    • Public DB hit
      GI:169252500
      ABV46253
      1 of 17 hits reported for Hepatitis C virus subtype 1a.
    • Hit length
      3,011 aa
    • E Value
      0E0
    • BLAST Score
      4,027.6 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ABV46253
      65.96% cov
    • Alignment Length
      1,986 aa
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
7,987
Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary

Declared organism:
Artificial

Determined organism:
  • Hepatitis C virus subtype 1b

    Hepatitis C virus subtype 1b

    • Public DB hit
      GI:12831192
      AF333324
      1 of 11 hits reported for Hepatitis C virus subtype 1b.
    • Hit length
      9,587 bp
    • E Value
      0E0
    • BLAST Score
      10,896.4 bits
    • Similarity
      98.51%
    • Coverage
      77.43%
    • Alignment (schematic)

      SEQ ID NO 3
      77.43% cov
      AF333324
      64.34% cov
    • Alignment Length
      6,195 bp
    • CIGAR string
      1803H1408MDMI609MN38MN16MN26MN416MN26MN86MN71MN113MN468MN243MN2130MN10MI2MD7MN6MN3M2N14MN6MI2MN2MN2MD5MN4MIMD29MI3MD2MI3MD2MN14M2N4MN2MDMN2MNI13MN8M3N5MN17MN6MN2MN6MN6MN12MI2MNMNMD10MN2M2N3MN3M2N13MN8MN7MNM2D3MIMI10MI4M2NMD14MD20MD8MD5MN4M2N2M5D6MD2M2D3M2D3MD2MD2MN2MND108M mismatches: 54 - insertions: 11 - deletions: 27
  • Hepatitis C virus replicon I389/NS3-3'UTR

    Hepatitis C virus replicon I389/NS3-3'UTR

    • Public DB hit
      GI:5441840
      AJ242654
    • Hit length
      8,001 bp
    • E Value
      0E0
    • BLAST Score
      9,625.9 bits
    • Similarity
      92.24%
    • Coverage
      85.19%
    • Alignment (schematic)

      SEQ ID NO 3
      85.19% cov
      AJ242654
      85.06% cov
    • Alignment Length
      6,839 bp
  • Hepatitis C virus replicon I377/NS3-3'UTR

    Hepatitis C virus replicon I377/NS3-3'UTR

    • Public DB hit
      GI:5441834
      AJ242652
    • Hit length
      7,989 bp
    • E Value
      0E0
    • BLAST Score
      9,625.9 bits
    • Similarity
      92.24%
    • Coverage
      85.19%
    • Alignment (schematic)

      SEQ ID NO 3
      85.19% cov
      AJ242652
      85.19% cov
    • Alignment Length
      6,839 bp
  • Hepatitis C virus

    Hepatitis C virus

    • Public DB hit
      GI:11559442
      AB049088
      1 of 12 hits reported for Hepatitis C virus.
    • Hit length
      9,616 bp
    • E Value
      0E0
    • BLAST Score
      8,859.5 bits
    • Similarity
      92.52%
    • Coverage
      77.43%
    • Alignment (schematic)

      SEQ ID NO 3
      77.43% cov
      AB049088
      64.44% cov
    • Alignment Length
      6,215 bp
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
7,990
Type
nucleotide
Locations
Claims, Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
  • Hepatitis C virus (isolate H77)

    Hepatitis C virus (isolate H77)

    • Public DB hit
      GI:2327072
      AF011752
      1 of 3 hits reported for Hepatitis C virus (isolate H77).
    • Hit length
      9,599 bp
    • E Value
      0E0
    • BLAST Score
      11,095.8 bits
    • Similarity
      99.05%
    • Coverage
      77.46%
    • Alignment (schematic)

      SEQ ID NO 4
      77.46% cov
      AF011752
      64.4% cov
    • Alignment Length
      6,191 bp
    • CIGAR string
      1801H7MN2MN5MN3MN4MN6MN35MN253MN81MNMN121MN34MN61MN422MN182MN178MN120MN713MN496MN60MN41MN204MN54MN121MN106MN142MN56MN42MN193MN141MN72MN134MN74MN415MN206MN191MN188MN113MN53MN581MN2MN34MN8MN3MD8MD11MD20MN3MNI4MN2MI3M2D2MD7MD2MD4M2ND108M mismatches: 48 - insertions: 2 - deletions: 9
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:6010587
      AF177040
      1 of 4 hits reported for synthetic construct.
    • Hit length
      9,611 bp
    • E Value
      0E0
    • BLAST Score
      11,034.9 bits
    • Similarity
      98.87%
    • Coverage
      77.46%
    • Alignment (schematic)

      SEQ ID NO 4
      77.46% cov
      AF177040
      64.32% cov
    • Alignment Length
      6,192 bp
    • CIGAR string
      1801H7MN2MN5MN3MN4MN6MN259MN29MN14MN66MNMN86MN2MN31MN96MN119MN101MN102MN91MI6MD56MN77MN47MN149MN28MN9MN110MN89MN18MN340MN221MN41MN158MN11MN6MN379MN41MN470MN215MNMN201MN47MN509MN320MN110MN284MN188MN119MN404MN14MN209MN2MN34MN8MN3MD8MD11MD20MN3MNI4MN2MI3M2D2MD7MD2MD4M2ND108M mismatches: 57 - insertions: 3 - deletions: 10
  • Hepatitis C virus subtype 1a

    Hepatitis C virus subtype 1a

    • Public DB hit
      GI:2316097
      AF009606
      1 of 18 hits reported for Hepatitis C virus subtype 1a.
    • Hit length
      9,646 bp
    • E Value
      0E0
    • BLAST Score
      10,962.8 bits
    • Similarity
      99.18%
    • Coverage
      76.2%
    • Alignment (schematic)

      SEQ ID NO 4
      76.2% cov
      AF009606
      63.08% cov
    • Alignment Length
      6,088 bp
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder

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