Methods For Generating Databases And Databases For Identifying Polymorphic Genetic Markers

Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
118 sequences found in this patent (in total)

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Displaying 81 - 90 of 118 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
81
Length
22
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:193211391
      NG_008107
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      183,614 bp
    • E Value
      1.57E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 81
      100% cov
      NG_008107
      0.01% cov
    • Alignment Length
      22 bp
    • CIGAR string
      16MN5M mismatches: 1 - insertions: 0 - deletions: 0
  • Streptococcus pneumoniae ATCC 700669

    Streptococcus pneumoniae ATCC 700669

    • Public DB hit
      GI:220673408
      FM211187
    • Hit length
      2,221,315 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      95.45%
    • Alignment (schematic)

      SEQ ID NO 81
      95.45% cov
      FM211187
      0% cov
    • Alignment Length
      21 bp
  • Streptococcus pneumoniae Hungary19A-6

    Streptococcus pneumoniae Hungary19A-6

    • Public DB hit
      GI:168994879
      CP000936
    • Hit length
      2,245,615 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      95.45%
    • Alignment (schematic)

      SEQ ID NO 81
      95.45% cov
      CP000936
      0% cov
    • Alignment Length
      21 bp
  • Streptococcus phage MM1 1998

    Streptococcus phage MM1 1998

    • Public DB hit
      GI:73747015
      DQ113772
    • Hit length
      38,893 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      95.45%
    • Alignment (schematic)

      SEQ ID NO 81
      95.45% cov
      DQ113772
      0.05% cov
    • Alignment Length
      21 bp
  • Streptococcus phage MM1

    Streptococcus phage MM1

    • Public DB hit
      GI:20067966
      AJ302074
    • Hit length
      40,248 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      95.45%
    • Alignment (schematic)

      SEQ ID NO 81
      95.45% cov
      AJ302074
      0.05% cov
    • Alignment Length
      21 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
82
Length
36
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
83
Length
34
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:209447062
      NG_008720
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      14,961 bp
    • E Value
      1.93E-3
    • BLAST Score
      48.1 bits
    • Similarity
      93.75%
    • Coverage
      94.12%
    • Alignment (schematic)

      SEQ ID NO 83
      94.12% cov
      NG_008720
      0.21% cov
    • Alignment Length
      32 bp
    • CIGAR string
      2H14MNMN15M mismatches: 2 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332228239
      XM_003263254
      1 of 10 hits reported for Nomascus leucogenys.
    • Hit length
      1,910 bp
    • E Value
      1.93E-3
    • BLAST Score
      48.1 bits
    • Similarity
      93.75%
    • Coverage
      94.12%
    • Alignment (schematic)

      SEQ ID NO 83
      94.12% cov
      XM_003263254
      1.68% cov
    • Alignment Length
      32 bp
    • CIGAR string
      2H14MNMN15M mismatches: 2 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297290235
      XM_002803639
      1 of 5 hits reported for Macaca mulatta.
    • Hit length
      1,273 bp
    • E Value
      1.93E-3
    • BLAST Score
      48.1 bits
    • Similarity
      93.75%
    • Coverage
      94.12%
    • Alignment (schematic)

      SEQ ID NO 83
      94.12% cov
      XM_002803639
      2.51% cov
    • Alignment Length
      32 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296197237
      XM_002746127
    • Hit length
      1,059 bp
    • E Value
      1.93E-3
    • BLAST Score
      48.1 bits
    • Similarity
      93.75%
    • Coverage
      94.12%
    • Alignment (schematic)

      SEQ ID NO 83
      94.12% cov
      XM_002746127
      3.02% cov
    • Alignment Length
      32 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:57114068
      NM_001009101
    • Hit length
      1,047 bp
    • E Value
      1.93E-3
    • BLAST Score
      48.1 bits
    • Similarity
      93.75%
    • Coverage
      94.12%
    • Alignment (schematic)

      SEQ ID NO 83
      94.12% cov
      NM_001009101
      3.06% cov
    • Alignment Length
      32 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:313882929
      HQ258197
    • Hit length
      1,081 bp
    • E Value
      1.93E-3
    • BLAST Score
      48.1 bits
    • Similarity
      93.75%
    • Coverage
      94.12%
    • Alignment (schematic)

      SEQ ID NO 83
      94.12% cov
      HQ258197
      2.96% cov
    • Alignment Length
      32 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
84
Length
40
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
85
Length
29
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:209447062
      NG_008720
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      14,961 bp
    • E Value
      4.71E0
    • BLAST Score
      36.2 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 85
      100% cov
      NG_008720
      0.2% cov
    • Alignment Length
      30 bp
    • CIGAR string
      16MIN12M mismatches: 1 - insertions: 1 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335291815
      XM_001927970
      1 of 2 hits reported for Sus scrofa.
    • Hit length
      1,911 bp
    • E Value
      4.71E0
    • BLAST Score
      36.2 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 85
      100% cov
      XM_001927970
      1.57% cov
    • Alignment Length
      30 bp
    • CIGAR string
      16MIN12M mismatches: 1 - insertions: 1 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332228241
      XM_003263255
      1 of 8 hits reported for Nomascus leucogenys.
    • Hit length
      1,688 bp
    • E Value
      4.71E0
    • BLAST Score
      36.2 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 85
      100% cov
      XM_003263255
      1.78% cov
    • Alignment Length
      30 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297677340
      XM_002816513
      1 of 5 hits reported for Pongo abelii.
    • Hit length
      1,278 bp
    • E Value
      4.71E0
    • BLAST Score
      36.2 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 85
      100% cov
      XM_002816513
      2.35% cov
    • Alignment Length
      30 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297290235
      XM_002803639
      1 of 5 hits reported for Macaca mulatta.
    • Hit length
      1,273 bp
    • E Value
      4.71E0
    • BLAST Score
      36.2 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 85
      100% cov
      XM_002803639
      2.36% cov
    • Alignment Length
      30 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149731859
      XM_001497045
    • Hit length
      1,047 bp
    • E Value
      4.71E0
    • BLAST Score
      36.2 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 85
      100% cov
      XM_001497045
      2.87% cov
    • Alignment Length
      30 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
86
Length
30
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:262331545
      NG_013351
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      27,374 bp
    • E Value
      5.23E0
    • BLAST Score
      36.2 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 86
      100% cov
      NG_013351
      0.11% cov
    • Alignment Length
      30 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332807649
      XM_001141040
    • Hit length
      7,978 bp
    • E Value
      5.23E0
    • BLAST Score
      36.2 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 86
      100% cov
      XM_001141040
      0.36% cov
    • Alignment Length
      30 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297666448
      XM_002811499
    • Hit length
      2,048 bp
    • E Value
      5.23E0
    • BLAST Score
      36.2 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 86
      100% cov
      XM_002811499
      1.42% cov
    • Alignment Length
      30 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
87
Length
38
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
88
Length
26
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:293651587
      NG_017013
      1 of 17 hits reported for Homo sapiens.
    • Hit length
      26,144 bp
    • E Value
      1.5E-2
    • BLAST Score
      44.1 bits
    • Similarity
      96.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 88
      100% cov
      NG_017013
      0.1% cov
    • Alignment Length
      26 bp
    • CIGAR string
      14MN11M mismatches: 1 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332847219
      XM_003315360
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      2,652 bp
    • E Value
      1.5E-2
    • BLAST Score
      44.1 bits
    • Similarity
      96.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 88
      100% cov
      XM_003315360
      0.98% cov
    • Alignment Length
      26 bp
    • CIGAR string
      14MN11M mismatches: 1 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:261857817
      AB527267
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,196 bp
    • E Value
      1.5E-2
    • BLAST Score
      44.1 bits
    • Similarity
      96.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 88
      100% cov
      AB527267
      2.17% cov
    • Alignment Length
      26 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
89
Length
27
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:293651587
      NG_017013
      1 of 17 hits reported for Homo sapiens.
    • Hit length
      26,144 bp
    • E Value
      1.06E0
    • BLAST Score
      38.2 bits
    • Similarity
      96.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 89
      100% cov
      NG_017013
      0.1% cov
    • Alignment Length
      27 bp
    • CIGAR string
      15MD11M mismatches: 0 - insertions: 0 - deletions: 1
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332847219
      XM_003315360
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      2,652 bp
    • E Value
      1.06E0
    • BLAST Score
      38.2 bits
    • Similarity
      96.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 89
      100% cov
      XM_003315360
      0.98% cov
    • Alignment Length
      27 bp
    • CIGAR string
      15MD11M mismatches: 0 - insertions: 0 - deletions: 1
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:261857817
      AB527267
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,196 bp
    • E Value
      1.06E0
    • BLAST Score
      38.2 bits
    • Similarity
      96.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 89
      100% cov
      AB527267
      2.17% cov
    • Alignment Length
      27 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
90
Length
31
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools

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