Methods For Generating Databases And Databases For Identifying Polymorphic Genetic Markers

Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
118 sequences found in this patent (in total)

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Displaying 51 - 60 of 118 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
51
Length
23
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Culex quinquefasciatus

    Culex quinquefasciatus

    • Public DB hit
      GI:170052793
      XM_001862348
    • Hit length
      827 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      XM_001862348
      2.78% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Cryptosporidium hominis TU502

    Cryptosporidium hominis TU502

    • Public DB hit
      GI:67581119
      XM_659743
    • Hit length
      387 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      XM_659743
      5.94% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • uncultured bacterium

    uncultured bacterium

    • Public DB hit
      GI:337294962
      FR852462
    • Hit length
      1,006 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      FR852462
      2.29% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI-C3HA

    Cloning vector pAW8ENdeI-C3HA

    • Public DB hit
      GI:336089660
      JF340118
    • Hit length
      8,433 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF340118
      0.27% cov
    • Alignment Length
      23 bp
  • Cloning vector pAW8ENdeI-CTAP

    Cloning vector pAW8ENdeI-CTAP

    • Public DB hit
      GI:336089658
      JF340117
    • Hit length
      8,892 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF340117
      0.26% cov
    • Alignment Length
      23 bp
  • Cloning vector pAW8ENdeI-cyEGFP

    Cloning vector pAW8ENdeI-cyEGFP

    • Public DB hit
      GI:336089656
      JF340116
    • Hit length
      9,057 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF340116
      0.25% cov
    • Alignment Length
      23 bp
  • Cloning vector pAW8ENdeI

    Cloning vector pAW8ENdeI

    • Public DB hit
      GI:336089653
      JF340115
    • Hit length
      8,289 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF340115
      0.28% cov
    • Alignment Length
      23 bp
  • Gene deletion vector pEMG

    Gene deletion vector pEMG

    • Public DB hit
      GI:335893243
      JF965437
    • Hit length
      3,168 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF965437
      0.73% cov
    • Alignment Length
      23 bp
  • Cloning vector pBOB

    Cloning vector pBOB

    • Public DB hit
      GI:335355349
      JF927991
    • Hit length
      8,730 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF927991
      0.26% cov
    • Alignment Length
      23 bp
  • Expression vector pLoxGentrc

    Expression vector pLoxGentrc

    • Public DB hit
      GI:334265229
      JF934954
    • Hit length
      6,295 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF934954
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV34

    Cloning vector pPLV34

    • Public DB hit
      GI:334085873
      JF909487
    • Hit length
      5,606 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909487
      0.41% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV33

    Cloning vector pPLV33

    • Public DB hit
      GI:334085870
      JF909486
    • Hit length
      5,251 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909486
      0.44% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV32

    Cloning vector pPLV32

    • Public DB hit
      GI:334085867
      JF909485
    • Hit length
      4,898 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909485
      0.47% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV31

    Cloning vector pPLV31

    • Public DB hit
      GI:334085864
      JF909484
    • Hit length
      9,507 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909484
      0.24% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV30

    Cloning vector pPLV30

    • Public DB hit
      GI:334085861
      JF909483
    • Hit length
      9,152 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909483
      0.25% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV29

    Cloning vector pPLV29

    • Public DB hit
      GI:334085858
      JF909482
    • Hit length
      8,799 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909482
      0.26% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV28

    Cloning vector pPLV28

    • Public DB hit
      GI:334085855
      JF909481
    • Hit length
      6,389 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909481
      0.36% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV27

    Cloning vector pPLV27

    • Public DB hit
      GI:334085852
      JF909480
    • Hit length
      6,750 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909480
      0.34% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV26

    Cloning vector pPLV26

    • Public DB hit
      GI:334085849
      JF909479
    • Hit length
      6,395 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909479
      0.36% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV25

    Cloning vector pPLV25

    • Public DB hit
      GI:334085846
      JF909478
    • Hit length
      6,042 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909478
      0.38% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV24

    Cloning vector pPLV24

    • Public DB hit
      GI:334085842
      JF909477
    • Hit length
      6,862 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909477
      0.34% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV23

    Cloning vector pPLV23

    • Public DB hit
      GI:334085838
      JF909476
    • Hit length
      6,507 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909476
      0.35% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV22

    Cloning vector pPLV22

    • Public DB hit
      GI:334085834
      JF909475
    • Hit length
      6,154 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909475
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV21

    Cloning vector pPLV21

    • Public DB hit
      GI:334085830
      JF909474
    • Hit length
      6,151 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909474
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV20

    Cloning vector pPLV20

    • Public DB hit
      GI:334085826
      JF909473
    • Hit length
      5,797 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 51
      100% cov
      JF909473
      0.4% cov
    • Alignment Length
      23 bp
Occurrence
588 times in PatSeqDB
Tools
SEQ ID NO
52
Length
18
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862681
      XM_001138292
      1 of 10 hits reported for Pan troglodytes.
    • Hit length
      1,133 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 52
      100% cov
      XM_001138292
      1.59% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332244627
      XM_003271426
      1 of 8 hits reported for Nomascus leucogenys.
    • Hit length
      1,392 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 52
      100% cov
      XM_003271426
      1.29% cov
    • Alignment Length
      18 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:315013567
      NM_001199729
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      1,716 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 52
      100% cov
      NM_001199729
      1.05% cov
    • Alignment Length
      18 bp
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:295681572
      AC214979
      1 of 2 hits reported for Gallus gallus.
    • Hit length
      190,330 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 52
      100% cov
      AC214979
      0.01% cov
    • Alignment Length
      18 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
53
Length
20
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:336285265
      NG_029153
      1 of 25 hits reported for Homo sapiens.
    • Hit length
      66,244 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 53
      100% cov
      NG_029153
      0.03% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
77 times in PatSeqDB
Tools
SEQ ID NO
54
Length
22
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809289
      NG_011493
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      79,381 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 54
      100% cov
      NG_011493
      0.03% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
55
Length
20
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809289
      NG_011493
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      79,381 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 55
      100% cov
      NG_011493
      0.03% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
26 times in PatSeqDB
Tools
SEQ ID NO
56
Length
18
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:219689120
      NG_009262
      1 of 14 hits reported for Homo sapiens.
    • Hit length
      21,891 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 56
      100% cov
      NG_009262
      0.08% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332841676
      XM_001149885
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      3,058 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 56
      100% cov
      XM_001149885
      0.59% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332261490
      XM_003279757
      1 of 4 hits reported for Nomascus leucogenys.
    • Hit length
      1,300 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 56
      100% cov
      XM_003279757
      1.38% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296188997
      XM_002742552
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      1,377 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 56
      100% cov
      XM_002742552
      1.31% cov
    • Alignment Length
      18 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:313883363
      HQ258414
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,369 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 56
      100% cov
      HQ258414
      1.31% cov
    • Alignment Length
      18 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
57
Length
18
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:219689120
      NG_009262
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      21,891 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 57
      100% cov
      NG_009262
      0.08% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:111120407
      AC161613
      1 of 3 hits reported for Pan troglodytes.
    • Hit length
      218,563 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 57
      100% cov
      AC161613
      0.01% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Gorilla gorilla

    Gorilla gorilla

    • Public DB hit
      GI:87046160
      DQ142917
      1 of 2 hits reported for Gorilla gorilla.
    • Hit length
      10,198 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 57
      100% cov
      DQ142917
      0.18% cov
    • Alignment Length
      18 bp
  • Pan paniscus

    Pan paniscus

    • Public DB hit
      GI:87046150
      DQ142913
      1 of 2 hits reported for Pan paniscus.
    • Hit length
      9,544 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 57
      100% cov
      DQ142913
      0.19% cov
    • Alignment Length
      18 bp
  • Branchiostoma floridae

    Branchiostoma floridae

    • Public DB hit
      GI:260805763
      XM_002597710
    • Hit length
      366 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 57
      94.44% cov
      XM_002597710
      4.64% cov
    • Alignment Length
      17 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:254746260
      FP015883
    • Hit length
      207,869 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 57
      94.44% cov
      FP015883
      0.01% cov
    • Alignment Length
      17 bp
  • Paralichthys olivaceus

    Paralichthys olivaceus

    • Public DB hit
      GI:237772683
      FJ915047
      1 of 5 hits reported for Paralichthys olivaceus.
    • Hit length
      163 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 57
      94.44% cov
      FJ915047
      10.43% cov
    • Alignment Length
      17 bp
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:116310898
      CR855227
    • Hit length
      144,811 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 57
      94.44% cov
      CR855227
      0.01% cov
    • Alignment Length
      17 bp
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
58
Length
15
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
59
Length
30
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
60
Length
15
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools

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