Methods For Generating Databases And Databases For Identifying Polymorphic Genetic Markers

Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
118 sequences found in this patent (in total)

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Displaying 41 - 50 of 118 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
41
Length
43
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
26 times in PatSeqDB
Tools
SEQ ID NO
42
Length
22
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809289
      NG_011493
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      79,381 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 42
      100% cov
      NG_011493
      0.03% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
43
Length
23
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Culex quinquefasciatus

    Culex quinquefasciatus

    • Public DB hit
      GI:170052793
      XM_001862348
    • Hit length
      827 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      XM_001862348
      2.78% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Cryptosporidium hominis TU502

    Cryptosporidium hominis TU502

    • Public DB hit
      GI:67581119
      XM_659743
    • Hit length
      387 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      XM_659743
      5.94% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • uncultured bacterium

    uncultured bacterium

    • Public DB hit
      GI:337294962
      FR852462
    • Hit length
      1,006 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      FR852462
      2.29% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI-C3HA

    Cloning vector pAW8ENdeI-C3HA

    • Public DB hit
      GI:336089660
      JF340118
    • Hit length
      8,433 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF340118
      0.27% cov
    • Alignment Length
      23 bp
  • Cloning vector pAW8ENdeI-CTAP

    Cloning vector pAW8ENdeI-CTAP

    • Public DB hit
      GI:336089658
      JF340117
    • Hit length
      8,892 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF340117
      0.26% cov
    • Alignment Length
      23 bp
  • Cloning vector pAW8ENdeI-cyEGFP

    Cloning vector pAW8ENdeI-cyEGFP

    • Public DB hit
      GI:336089656
      JF340116
    • Hit length
      9,057 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF340116
      0.25% cov
    • Alignment Length
      23 bp
  • Cloning vector pAW8ENdeI

    Cloning vector pAW8ENdeI

    • Public DB hit
      GI:336089653
      JF340115
    • Hit length
      8,289 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF340115
      0.28% cov
    • Alignment Length
      23 bp
  • Gene deletion vector pEMG

    Gene deletion vector pEMG

    • Public DB hit
      GI:335893243
      JF965437
    • Hit length
      3,168 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF965437
      0.73% cov
    • Alignment Length
      23 bp
  • Cloning vector pBOB

    Cloning vector pBOB

    • Public DB hit
      GI:335355349
      JF927991
    • Hit length
      8,730 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF927991
      0.26% cov
    • Alignment Length
      23 bp
  • Expression vector pLoxGentrc

    Expression vector pLoxGentrc

    • Public DB hit
      GI:334265229
      JF934954
    • Hit length
      6,295 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF934954
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV34

    Cloning vector pPLV34

    • Public DB hit
      GI:334085873
      JF909487
    • Hit length
      5,606 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909487
      0.41% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV33

    Cloning vector pPLV33

    • Public DB hit
      GI:334085870
      JF909486
    • Hit length
      5,251 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909486
      0.44% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV32

    Cloning vector pPLV32

    • Public DB hit
      GI:334085867
      JF909485
    • Hit length
      4,898 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909485
      0.47% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV31

    Cloning vector pPLV31

    • Public DB hit
      GI:334085864
      JF909484
    • Hit length
      9,507 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909484
      0.24% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV30

    Cloning vector pPLV30

    • Public DB hit
      GI:334085861
      JF909483
    • Hit length
      9,152 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909483
      0.25% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV29

    Cloning vector pPLV29

    • Public DB hit
      GI:334085858
      JF909482
    • Hit length
      8,799 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909482
      0.26% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV28

    Cloning vector pPLV28

    • Public DB hit
      GI:334085855
      JF909481
    • Hit length
      6,389 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909481
      0.36% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV27

    Cloning vector pPLV27

    • Public DB hit
      GI:334085852
      JF909480
    • Hit length
      6,750 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909480
      0.34% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV26

    Cloning vector pPLV26

    • Public DB hit
      GI:334085849
      JF909479
    • Hit length
      6,395 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909479
      0.36% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV25

    Cloning vector pPLV25

    • Public DB hit
      GI:334085846
      JF909478
    • Hit length
      6,042 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909478
      0.38% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV24

    Cloning vector pPLV24

    • Public DB hit
      GI:334085842
      JF909477
    • Hit length
      6,862 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909477
      0.34% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV23

    Cloning vector pPLV23

    • Public DB hit
      GI:334085838
      JF909476
    • Hit length
      6,507 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909476
      0.35% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV22

    Cloning vector pPLV22

    • Public DB hit
      GI:334085834
      JF909475
    • Hit length
      6,154 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909475
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV21

    Cloning vector pPLV21

    • Public DB hit
      GI:334085830
      JF909474
    • Hit length
      6,151 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909474
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV20

    Cloning vector pPLV20

    • Public DB hit
      GI:334085826
      JF909473
    • Hit length
      5,797 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 43
      100% cov
      JF909473
      0.4% cov
    • Alignment Length
      23 bp
Occurrence
588 times in PatSeqDB
Tools
SEQ ID NO
44
Length
18
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809289
      NG_011493
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      79,381 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 44
      100% cov
      NG_011493
      0.02% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:307684755
      AB590263
      1 of 4 hits reported for synthetic construct.
    • Hit length
      2,003 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 44
      100% cov
      AB590263
      0.9% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332809455
      XM_001142936
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      3,223 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 44
      94.44% cov
      XM_001142936
      0.53% cov
    • Alignment Length
      17 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332221820
      XM_003260015
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      4,216 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 44
      94.44% cov
      XM_003260015
      0.4% cov
    • Alignment Length
      17 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297664535
      XM_002810649
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      3,233 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 44
      94.44% cov
      XM_002810649
      0.53% cov
    • Alignment Length
      17 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297279073
      XM_001109351
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      4,059 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 44
      94.44% cov
      XM_001109351
      0.42% cov
    • Alignment Length
      17 bp
  • Paenibacillus sp. Y412MC10

    Paenibacillus sp. Y412MC10

    • Public DB hit
      GI:261280339
      CP001793
    • Hit length
      7,121,665 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 44
      94.44% cov
      CP001793
      0% cov
    • Alignment Length
      17 bp
Occurrence
26 times in PatSeqDB
Tools
SEQ ID NO
45
Length
21
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809289
      NG_011493
      1 of 13 hits reported for Homo sapiens.
    • Hit length
      79,381 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 45
      100% cov
      NG_011493
      0.03% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332848310
      XM_003315577
      1 of 10 hits reported for Pan troglodytes.
    • Hit length
      4,067 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 45
      100% cov
      XM_003315577
      0.52% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265077
      XM_003281505
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      4,063 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 45
      100% cov
      XM_003281505
      0.52% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
26 times in PatSeqDB
Tools
SEQ ID NO
46
Length
43
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Binary vector pWY109

    Binary vector pWY109

    • Public DB hit
      GI:219718108
      FJ410919
    • Hit length
      5,575 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      FJ410919
      0.47% cov
    • Alignment Length
      26 bp
    • CIGAR string
      26M17H mismatches: 0 - insertions: 0 - deletions: 0
  • Binary vector pWY107

    Binary vector pWY107

    • Public DB hit
      GI:219718104
      FJ410918
    • Hit length
      5,818 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      FJ410918
      0.45% cov
    • Alignment Length
      26 bp
    • CIGAR string
      26M17H mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:15488434
      AF408185
      1 of 3 hits reported for synthetic construct.
    • Hit length
      82 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AF408185
      31.71% cov
    • Alignment Length
      26 bp
    • CIGAR string
      26M17H mismatches: 0 - insertions: 0 - deletions: 0
  • Binary vector pORE_R5

    Binary vector pORE_R5

    • Public DB hit
      GI:45862401
      AY562548
    • Hit length
      7,221 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562548
      0.36% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_R4

    Binary vector pORE_R4

    • Public DB hit
      GI:45862396
      AY562547
    • Hit length
      7,280 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562547
      0.36% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_R3

    Binary vector pORE_R3

    • Public DB hit
      GI:45862391
      AY562546
    • Hit length
      8,255 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562546
      0.31% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_R2

    Binary vector pORE_R2

    • Public DB hit
      GI:45862386
      AY562545
    • Hit length
      8,367 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562545
      0.31% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_R1

    Binary vector pORE_R1

    • Public DB hit
      GI:45862381
      AY562544
    • Hit length
      9,342 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562544
      0.28% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_O5

    Binary vector pORE_O5

    • Public DB hit
      GI:45862377
      AY562543
    • Hit length
      6,496 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562543
      0.4% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_O4

    Binary vector pORE_O4

    • Public DB hit
      GI:45862373
      AY562542
    • Hit length
      6,555 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562542
      0.4% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_O3

    Binary vector pORE_O3

    • Public DB hit
      GI:45862369
      AY562541
    • Hit length
      6,312 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562541
      0.41% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_O2

    Binary vector pORE_O2

    • Public DB hit
      GI:45862365
      AY562540
    • Hit length
      7,530 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562540
      0.35% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_O1

    Binary vector pORE_O1

    • Public DB hit
      GI:45862361
      AY562539
    • Hit length
      7,287 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562539
      0.36% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_EX

    Binary vector pORE_EX

    • Public DB hit
      GI:45862356
      AY562538
    • Hit length
      9,138 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562538
      0.28% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_E4

    Binary vector pORE_E4

    • Public DB hit
      GI:45862352
      AY562537
    • Hit length
      8,029 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562537
      0.32% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_E3

    Binary vector pORE_E3

    • Public DB hit
      GI:45862348
      AY562536
    • Hit length
      7,786 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562536
      0.33% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_E2

    Binary vector pORE_E2

    • Public DB hit
      GI:45862344
      AY562535
    • Hit length
      8,028 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562535
      0.32% cov
    • Alignment Length
      26 bp
  • Binary vector pORE_E1

    Binary vector pORE_E1

    • Public DB hit
      GI:45862340
      AY562534
    • Hit length
      7,785 bp
    • E Value
      2.03E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      60.47%
    • Alignment (schematic)

      SEQ ID NO 46
      60.47% cov
      AY562534
      0.33% cov
    • Alignment Length
      26 bp
Occurrence
26 times in PatSeqDB
Tools
SEQ ID NO
47
Length
23
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
oligonucleotide primer
Determined organism
  • Culex quinquefasciatus

    Culex quinquefasciatus

    • Public DB hit
      GI:170052793
      XM_001862348
    • Hit length
      827 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      XM_001862348
      2.78% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Cryptosporidium hominis TU502

    Cryptosporidium hominis TU502

    • Public DB hit
      GI:67581119
      XM_659743
    • Hit length
      387 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      XM_659743
      5.94% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • uncultured bacterium

    uncultured bacterium

    • Public DB hit
      GI:337294962
      FR852462
    • Hit length
      1,006 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      FR852462
      2.29% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI-C3HA

    Cloning vector pAW8ENdeI-C3HA

    • Public DB hit
      GI:336089660
      JF340118
    • Hit length
      8,433 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF340118
      0.27% cov
    • Alignment Length
      23 bp
  • Cloning vector pAW8ENdeI-CTAP

    Cloning vector pAW8ENdeI-CTAP

    • Public DB hit
      GI:336089658
      JF340117
    • Hit length
      8,892 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF340117
      0.26% cov
    • Alignment Length
      23 bp
  • Cloning vector pAW8ENdeI-cyEGFP

    Cloning vector pAW8ENdeI-cyEGFP

    • Public DB hit
      GI:336089656
      JF340116
    • Hit length
      9,057 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF340116
      0.25% cov
    • Alignment Length
      23 bp
  • Cloning vector pAW8ENdeI

    Cloning vector pAW8ENdeI

    • Public DB hit
      GI:336089653
      JF340115
    • Hit length
      8,289 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF340115
      0.28% cov
    • Alignment Length
      23 bp
  • Gene deletion vector pEMG

    Gene deletion vector pEMG

    • Public DB hit
      GI:335893243
      JF965437
    • Hit length
      3,168 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF965437
      0.73% cov
    • Alignment Length
      23 bp
  • Cloning vector pBOB

    Cloning vector pBOB

    • Public DB hit
      GI:335355349
      JF927991
    • Hit length
      8,730 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF927991
      0.26% cov
    • Alignment Length
      23 bp
  • Expression vector pLoxGentrc

    Expression vector pLoxGentrc

    • Public DB hit
      GI:334265229
      JF934954
    • Hit length
      6,295 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF934954
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV34

    Cloning vector pPLV34

    • Public DB hit
      GI:334085873
      JF909487
    • Hit length
      5,606 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909487
      0.41% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV33

    Cloning vector pPLV33

    • Public DB hit
      GI:334085870
      JF909486
    • Hit length
      5,251 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909486
      0.44% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV32

    Cloning vector pPLV32

    • Public DB hit
      GI:334085867
      JF909485
    • Hit length
      4,898 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909485
      0.47% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV31

    Cloning vector pPLV31

    • Public DB hit
      GI:334085864
      JF909484
    • Hit length
      9,507 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909484
      0.24% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV30

    Cloning vector pPLV30

    • Public DB hit
      GI:334085861
      JF909483
    • Hit length
      9,152 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909483
      0.25% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV29

    Cloning vector pPLV29

    • Public DB hit
      GI:334085858
      JF909482
    • Hit length
      8,799 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909482
      0.26% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV28

    Cloning vector pPLV28

    • Public DB hit
      GI:334085855
      JF909481
    • Hit length
      6,389 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909481
      0.36% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV27

    Cloning vector pPLV27

    • Public DB hit
      GI:334085852
      JF909480
    • Hit length
      6,750 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909480
      0.34% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV26

    Cloning vector pPLV26

    • Public DB hit
      GI:334085849
      JF909479
    • Hit length
      6,395 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909479
      0.36% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV25

    Cloning vector pPLV25

    • Public DB hit
      GI:334085846
      JF909478
    • Hit length
      6,042 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909478
      0.38% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV24

    Cloning vector pPLV24

    • Public DB hit
      GI:334085842
      JF909477
    • Hit length
      6,862 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909477
      0.34% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV23

    Cloning vector pPLV23

    • Public DB hit
      GI:334085838
      JF909476
    • Hit length
      6,507 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909476
      0.35% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV22

    Cloning vector pPLV22

    • Public DB hit
      GI:334085834
      JF909475
    • Hit length
      6,154 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909475
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV21

    Cloning vector pPLV21

    • Public DB hit
      GI:334085830
      JF909474
    • Hit length
      6,151 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909474
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV20

    Cloning vector pPLV20

    • Public DB hit
      GI:334085826
      JF909473
    • Hit length
      5,797 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 47
      100% cov
      JF909473
      0.4% cov
    • Alignment Length
      23 bp
Occurrence
588 times in PatSeqDB
Tools
SEQ ID NO
48
Length
18
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Oligonucleotide primer
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809289
      NG_011493
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      79,381 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 48
      100% cov
      NG_011493
      0.02% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332848310
      XM_003315577
    • Hit length
      4,067 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 48
      100% cov
      XM_003315577
      0.44% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Phytophthora infestans T30-4

    Phytophthora infestans T30-4

    • Public DB hit
      GI:301093952
      XM_002997775
    • Hit length
      1,490 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 48
      94.44% cov
      XM_002997775
      1.14% cov
    • Alignment Length
      17 bp
  • Hyperthermus butylicus DSM 5456

    Hyperthermus butylicus DSM 5456

    • Public DB hit
      GI:123977600
      CP000493
    • Hit length
      1,667,163 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 48
      94.44% cov
      CP000493
      0% cov
    • Alignment Length
      17 bp
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:123686772
      AM450351
    • Hit length
      56,888 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 48
      94.44% cov
      AM450351
      0.03% cov
    • Alignment Length
      17 bp
  • Arthrobacter aurescens TC1

    Arthrobacter aurescens TC1

    • Public DB hit
      GI:119947346
      CP000474
    • Hit length
      4,597,686 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 48
      94.44% cov
      CP000474
      0% cov
    • Alignment Length
      17 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
49
Length
20
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862681
      XM_001138292
      1 of 10 hits reported for Pan troglodytes.
    • Hit length
      1,133 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 49
      100% cov
      XM_001138292
      1.77% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:315013567
      NM_001199729
      1 of 9 hits reported for Homo sapiens.
    • Hit length
      1,716 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 49
      100% cov
      NM_001199729
      1.17% cov
    • Alignment Length
      20 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297298938
      XM_002805259
      1 of 6 hits reported for Macaca mulatta.
    • Hit length
      1,708 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 49
      100% cov
      XM_002805259
      1.17% cov
    • Alignment Length
      20 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
50
Length
44
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools

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