Methods For Generating Databases And Databases For Identifying Polymorphic Genetic Markers

Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
118 sequences found in this patent (in total)

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Displaying 31 - 40 of 118 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
31
Length
2,363
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:2707343
      AF037439
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      2,363 bp
    • E Value
      0E0
    • BLAST Score
      4,364.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 31
      100% cov
      AF037439
      100% cov
    • Alignment Length
      2,363 bp
    • CIGAR string
      2363M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296201625
      XM_002748063
    • Hit length
      2,955 bp
    • E Value
      0E0
    • BLAST Score
      3,801.5 bits
    • Similarity
      95.85%
    • Coverage
      99.66%
    • Alignment (schematic)

      SEQ ID NO 31
      99.66% cov
      XM_002748063
      79.53% cov
    • Alignment Length
      2,364 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123995980
      DQ894666
      1 of 3 hits reported for synthetic construct.
    • Hit length
      2,029 bp
    • E Value
      0E0
    • BLAST Score
      3,631.6 bits
    • Similarity
      99.65%
    • Coverage
      84.09%
    • Alignment (schematic)

      SEQ ID NO 31
      84.09% cov
      DQ894666
      97.93% cov
    • Alignment Length
      1,987 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297715775
      XM_002834203
    • Hit length
      2,478 bp
    • E Value
      0E0
    • BLAST Score
      3,535.6 bits
    • Similarity
      96.68%
    • Coverage
      89.63%
    • Alignment (schematic)

      SEQ ID NO 31
      89.63% cov
      XM_002834203
      86.2% cov
    • Alignment Length
      2,140 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297272138
      XM_001099682
    • Hit length
      2,735 bp
    • E Value
      0E0
    • BLAST Score
      3,498.7 bits
    • Similarity
      97.47%
    • Coverage
      86.97%
    • Alignment (schematic)

      SEQ ID NO 31
      86.97% cov
      XM_001099682
      74.81% cov
    • Alignment Length
      2,056 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332848310
      XM_003315577
    • Hit length
      4,067 bp
    • E Value
      0E0
    • BLAST Score
      3,411.9 bits
    • Similarity
      99.21%
    • Coverage
      80.07%
    • Alignment (schematic)

      SEQ ID NO 31
      80.07% cov
      XM_003315577
      46.55% cov
    • Alignment Length
      1,893 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73956107
      XM_846274
    • Hit length
      2,961 bp
    • E Value
      0E0
    • BLAST Score
      3,391.6 bits
    • Similarity
      92.84%
    • Coverage
      99.11%
    • Alignment (schematic)

      SEQ ID NO 31
      99.11% cov
      XM_846274
      79.2% cov
    • Alignment Length
      2,361 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:67970424
      AB169473
    • Hit length
      1,999 bp
    • E Value
      0E0
    • BLAST Score
      3,354.6 bits
    • Similarity
      97.79%
    • Coverage
      82.31%
    • Alignment (schematic)

      SEQ ID NO 31
      82.31% cov
      AB169473
      97.3% cov
    • Alignment Length
      1,946 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265077
      XM_003281505
    • Hit length
      4,063 bp
    • E Value
      0E0
    • BLAST Score
      3,317.7 bits
    • Similarity
      98.31%
    • Coverage
      80.07%
    • Alignment (schematic)

      SEQ ID NO 31
      80.07% cov
      XM_003281505
      46.59% cov
    • Alignment Length
      1,893 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149725005
      XM_001504879
    • Hit length
      2,690 bp
    • E Value
      0E0
    • BLAST Score
      2,966.8 bits
    • Similarity
      91.92%
    • Coverage
      89.93%
    • Alignment (schematic)

      SEQ ID NO 31
      89.93% cov
      XM_001504879
      79% cov
    • Alignment Length
      2,142 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291404964
      XM_002718948
    • Hit length
      2,163 bp
    • E Value
      0E0
    • BLAST Score
      2,920.7 bits
    • Similarity
      93.25%
    • Coverage
      83.92%
    • Alignment (schematic)

      SEQ ID NO 31
      83.92% cov
      XM_002718948
      91.68% cov
    • Alignment Length
      1,986 bp
Occurrence
34 times in PatSeqDB
Tools
SEQ ID NO
32
Length
662
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:2707344
      AAB92260
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,383.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 32
      100% cov
      AAB92260
      100% cov
    • Alignment Length
      662 aa
    • CIGAR string
      662M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296201626
      XP_002748109
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,330.5 bits
    • Similarity
      98.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 32
      100% cov
      XP_002748109
      100% cov
    • Alignment Length
      662 aa
    • CIGAR string
      5MN42MN62MN21MN42MN15MN16MN20MN17MN6M2N12MN56MN196MN15MN9MN57MN35MNMN16M mismatches: 19 - insertions: 0 - deletions: 0
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73956108
      XP_851367
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,309.7 bits
    • Similarity
      96.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 32
      100% cov
      XP_851367
      100% cov
    • Alignment Length
      662 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291404965
      XP_002718994
    • Hit length
      720 aa
    • E Value
      0E0
    • BLAST Score
      1,304.7 bits
    • Similarity
      97.28%
    • Coverage
      99.85%
    • Alignment (schematic)

      SEQ ID NO 32
      99.85% cov
      XP_002718994
      91.81% cov
    • Alignment Length
      661 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332848311
      XP_003315625
    • Hit length
      656 aa
    • E Value
      0E0
    • BLAST Score
      1,292.3 bits
    • Similarity
      97.43%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 32
      100% cov
      XP_003315625
      100% cov
    • Alignment Length
      662 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297715776
      XP_002834249
    • Hit length
      766 aa
    • E Value
      0E0
    • BLAST Score
      1,288.1 bits
    • Similarity
      96.42%
    • Coverage
      99.85%
    • Alignment (schematic)

      SEQ ID NO 32
      99.85% cov
      XP_002834249
      87.08% cov
    • Alignment Length
      670 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265078
      XP_003281553
    • Hit length
      656 aa
    • E Value
      0E0
    • BLAST Score
      1,274.6 bits
    • Similarity
      96.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 32
      100% cov
      XP_003281553
      100% cov
    • Alignment Length
      662 aa
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:67970425
      BAE01555
    • Hit length
      636 aa
    • E Value
      0E0
    • BLAST Score
      1,274.2 bits
    • Similarity
      99.21%
    • Coverage
      95.77%
    • Alignment (schematic)

      SEQ ID NO 32
      95.77% cov
      BAE01555
      99.69% cov
    • Alignment Length
      634 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:159507402
      ABW97719
    • Hit length
      655 aa
    • E Value
      0E0
    • BLAST Score
      1,258.4 bits
    • Similarity
      95.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 32
      100% cov
      ABW97719
      100% cov
    • Alignment Length
      662 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:167736404
      NP_001108078
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,258 bits
    • Similarity
      94.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 32
      100% cov
      NP_001108078
      100% cov
    • Alignment Length
      662 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149725006
      XP_001504929
    • Hit length
      633 aa
    • E Value
      0E0
    • BLAST Score
      1,247.3 bits
    • Similarity
      96.52%
    • Coverage
      95.62%
    • Alignment (schematic)

      SEQ ID NO 32
      95.62% cov
      XP_001504929
      100% cov
    • Alignment Length
      633 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301770975
      XP_002920918
    • Hit length
      972 aa
    • E Value
      0E0
    • BLAST Score
      1,240.7 bits
    • Similarity
      94.72%
    • Coverage
      99.09%
    • Alignment (schematic)

      SEQ ID NO 32
      99.09% cov
      XP_002920918
      68.21% cov
    • Alignment Length
      663 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:40807354
      NP_064305
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,237.6 bits
    • Similarity
      94.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 32
      100% cov
      NP_064305
      100% cov
    • Alignment Length
      662 aa
Occurrence
44 times in PatSeqDB
Tools
SEQ ID NO
33
Length
2,363
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:2707343
      AF037439
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      2,363 bp
    • E Value
      0E0
    • BLAST Score
      4,359.2 bits
    • Similarity
      99.96%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 33
      100% cov
      AF037439
      100% cov
    • Alignment Length
      2,363 bp
    • CIGAR string
      2072MN290M mismatches: 1 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296201625
      XM_002748063
    • Hit length
      2,955 bp
    • E Value
      0E0
    • BLAST Score
      3,807.1 bits
    • Similarity
      95.9%
    • Coverage
      99.66%
    • Alignment (schematic)

      SEQ ID NO 33
      99.66% cov
      XM_002748063
      79.53% cov
    • Alignment Length
      2,364 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123995980
      DQ894666
      1 of 3 hits reported for synthetic construct.
    • Hit length
      2,029 bp
    • E Value
      0E0
    • BLAST Score
      3,626.1 bits
    • Similarity
      99.6%
    • Coverage
      84.09%
    • Alignment (schematic)

      SEQ ID NO 33
      84.09% cov
      DQ894666
      97.93% cov
    • Alignment Length
      1,987 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297715775
      XM_002834203
    • Hit length
      2,478 bp
    • E Value
      0E0
    • BLAST Score
      3,541.1 bits
    • Similarity
      96.73%
    • Coverage
      89.63%
    • Alignment (schematic)

      SEQ ID NO 33
      89.63% cov
      XM_002834203
      86.2% cov
    • Alignment Length
      2,140 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297272138
      XM_001099682
    • Hit length
      2,735 bp
    • E Value
      0E0
    • BLAST Score
      3,504.2 bits
    • Similarity
      97.52%
    • Coverage
      86.97%
    • Alignment (schematic)

      SEQ ID NO 33
      86.97% cov
      XM_001099682
      74.81% cov
    • Alignment Length
      2,056 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332848310
      XM_003315577
    • Hit length
      4,067 bp
    • E Value
      0E0
    • BLAST Score
      3,411.9 bits
    • Similarity
      99.21%
    • Coverage
      80.07%
    • Alignment (schematic)

      SEQ ID NO 33
      80.07% cov
      XM_003315577
      46.55% cov
    • Alignment Length
      1,893 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73956107
      XM_846274
    • Hit length
      2,961 bp
    • E Value
      0E0
    • BLAST Score
      3,397.1 bits
    • Similarity
      92.88%
    • Coverage
      99.11%
    • Alignment (schematic)

      SEQ ID NO 33
      99.11% cov
      XM_846274
      79.2% cov
    • Alignment Length
      2,361 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:67970424
      AB169473
    • Hit length
      1,999 bp
    • E Value
      0E0
    • BLAST Score
      3,360.2 bits
    • Similarity
      97.84%
    • Coverage
      82.31%
    • Alignment (schematic)

      SEQ ID NO 33
      82.31% cov
      AB169473
      97.3% cov
    • Alignment Length
      1,946 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265077
      XM_003281505
    • Hit length
      4,063 bp
    • E Value
      0E0
    • BLAST Score
      3,317.7 bits
    • Similarity
      98.31%
    • Coverage
      80.07%
    • Alignment (schematic)

      SEQ ID NO 33
      80.07% cov
      XM_003281505
      46.59% cov
    • Alignment Length
      1,893 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149725005
      XM_001504879
    • Hit length
      2,690 bp
    • E Value
      0E0
    • BLAST Score
      2,972.4 bits
    • Similarity
      91.97%
    • Coverage
      89.93%
    • Alignment (schematic)

      SEQ ID NO 33
      89.93% cov
      XM_001504879
      79% cov
    • Alignment Length
      2,142 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291404964
      XM_002718948
    • Hit length
      2,163 bp
    • E Value
      0E0
    • BLAST Score
      2,926.2 bits
    • Similarity
      93.3%
    • Coverage
      83.92%
    • Alignment (schematic)

      SEQ ID NO 33
      83.92% cov
      XM_002718948
      91.68% cov
    • Alignment Length
      1,986 bp
Occurrence
26 times in PatSeqDB
Tools
SEQ ID NO
34
Length
662
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:2707344
      AAB92260
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,382.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 34
      100% cov
      AAB92260
      100% cov
    • Alignment Length
      662 aa
    • CIGAR string
      645MN16M mismatches: 1 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296201626
      XP_002748109
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,330.9 bits
    • Similarity
      98.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 34
      100% cov
      XP_002748109
      100% cov
    • Alignment Length
      662 aa
    • CIGAR string
      5MN42MN62MN21MN42MN15MN16MN20MN17MN6M2N12MN56MN196MN15MN9MN57MN35MN18M mismatches: 18 - insertions: 0 - deletions: 0
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73956108
      XP_851367
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,310 bits
    • Similarity
      96.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 34
      100% cov
      XP_851367
      100% cov
    • Alignment Length
      662 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291404965
      XP_002718994
    • Hit length
      720 aa
    • E Value
      0E0
    • BLAST Score
      1,305.4 bits
    • Similarity
      97.28%
    • Coverage
      99.85%
    • Alignment (schematic)

      SEQ ID NO 34
      99.85% cov
      XP_002718994
      91.81% cov
    • Alignment Length
      661 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332848311
      XP_003315625
    • Hit length
      656 aa
    • E Value
      0E0
    • BLAST Score
      1,293.1 bits
    • Similarity
      97.43%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 34
      100% cov
      XP_003315625
      100% cov
    • Alignment Length
      662 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297715776
      XP_002834249
    • Hit length
      766 aa
    • E Value
      0E0
    • BLAST Score
      1,289.2 bits
    • Similarity
      96.42%
    • Coverage
      99.85%
    • Alignment (schematic)

      SEQ ID NO 34
      99.85% cov
      XP_002834249
      87.08% cov
    • Alignment Length
      670 aa
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:67970425
      BAE01555
    • Hit length
      636 aa
    • E Value
      0E0
    • BLAST Score
      1,275.8 bits
    • Similarity
      99.21%
    • Coverage
      95.77%
    • Alignment (schematic)

      SEQ ID NO 34
      95.77% cov
      BAE01555
      99.69% cov
    • Alignment Length
      634 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265078
      XP_003281553
    • Hit length
      656 aa
    • E Value
      0E0
    • BLAST Score
      1,274.6 bits
    • Similarity
      96.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 34
      100% cov
      XP_003281553
      100% cov
    • Alignment Length
      662 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:167736404
      NP_001108078
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,259.2 bits
    • Similarity
      94.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 34
      100% cov
      NP_001108078
      100% cov
    • Alignment Length
      662 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:159507402
      ABW97719
    • Hit length
      655 aa
    • E Value
      0E0
    • BLAST Score
      1,259.2 bits
    • Similarity
      95.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 34
      100% cov
      ABW97719
      100% cov
    • Alignment Length
      662 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149725006
      XP_001504929
    • Hit length
      633 aa
    • E Value
      0E0
    • BLAST Score
      1,248 bits
    • Similarity
      96.52%
    • Coverage
      95.62%
    • Alignment (schematic)

      SEQ ID NO 34
      95.62% cov
      XP_001504929
      100% cov
    • Alignment Length
      633 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301770975
      XP_002920918
    • Hit length
      972 aa
    • E Value
      0E0
    • BLAST Score
      1,241.5 bits
    • Similarity
      94.72%
    • Coverage
      99.09%
    • Alignment (schematic)

      SEQ ID NO 34
      99.09% cov
      XP_002920918
      68.21% cov
    • Alignment Length
      663 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:40807354
      NP_064305
    • Hit length
      662 aa
    • E Value
      0E0
    • BLAST Score
      1,238.4 bits
    • Similarity
      94.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 34
      100% cov
      NP_064305
      100% cov
    • Alignment Length
      662 aa
Occurrence
33 times in PatSeqDB
Tools
SEQ ID NO
35
Length
162,025
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:3779042
      AC005730
      1 of 16 hits reported for Homo sapiens.
    • Hit length
      162,025 bp
    • E Value
      0E0
    • BLAST Score
      299,204.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 35
      100% cov
      AC005730
      100% cov
    • Alignment Length
      162,025 bp
    • CIGAR string
      162025M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:113207763
      CT954296
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      189,451 bp
    • E Value
      0E0
    • BLAST Score
      7,544.7 bits
    • Similarity
      94.77%
    • Coverage
      3%
    • Alignment (schematic)

      SEQ ID NO 35
      3% cov
      CT954296
      2.56% cov
    • Alignment Length
      4,895 bp
    • CIGAR string
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mismatches: 172 - insertions: 35 - deletions: 49
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332848310
      XM_003315577
    • Hit length
      4,067 bp
    • E Value
      0E0
    • BLAST Score
      3,471 bits
    • Similarity
      99.12%
    • Coverage
      1.19%
    • Alignment (schematic)

      SEQ ID NO 35
      1.19% cov
      XM_003315577
      47.38% cov
    • Alignment Length
      1,933 bp
    • CIGAR string
      155164H42MN43MN116MN174MN21MD6MN21MN85MN93MN264MD185MN132M3D8MD398MN294MN34M4928H mismatches: 11 - insertions: 0 - deletions: 6
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297715777
      XM_002834189
    • Hit length
      1,177 bp
    • E Value
      0E0
    • BLAST Score
      1,893.9 bits
    • Similarity
      95.69%
    • Coverage
      0.73%
    • Alignment (schematic)

      SEQ ID NO 35
      0.73% cov
      XM_002834189
      100% cov
    • Alignment Length
      1,182 bp
    • CIGAR string
      52164H25MN3MN40MN6MN11MN10MN2MN7MN8MN4MN5MN72MN10MN21MN89MN20MI2MD4MN27MD27MNMN8MN10MN54MN23MN12MD6MN37MN30MN20MN5MN22MN28MN12MN15MN24MN25MN15MN7MN36MN10MN10MN9MNMN9MN34MI25MN42MDMN28MN174MD5M108681H mismatches: 44 - insertions: 2 - deletions: 5
Occurrence
26 times in PatSeqDB
Tools
SEQ ID NO
36
Length
162,025
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:3779042
      AC005730
      1 of 16 hits reported for Homo sapiens.
    • Hit length
      162,025 bp
    • E Value
      0E0
    • BLAST Score
      299,199 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 36
      100% cov
      AC005730
      100% cov
    • Alignment Length
      162,025 bp
    • CIGAR string
      156276MN5748M mismatches: 1 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:113207763
      CT954296
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      189,451 bp
    • E Value
      0E0
    • BLAST Score
      7,544.7 bits
    • Similarity
      94.77%
    • Coverage
      3%
    • Alignment (schematic)

      SEQ ID NO 36
      3% cov
      CT954296
      2.56% cov
    • Alignment Length
      4,895 bp
    • CIGAR string
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mismatches: 172 - insertions: 35 - deletions: 49
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332848310
      XM_003315577
    • Hit length
      4,067 bp
    • E Value
      0E0
    • BLAST Score
      3,465.4 bits
    • Similarity
      99.07%
    • Coverage
      1.19%
    • Alignment (schematic)

      SEQ ID NO 36
      1.19% cov
      XM_003315577
      47.38% cov
    • Alignment Length
      1,933 bp
    • CIGAR string
      155164H42MN43MN116MN174MN21MD6MN21MN85MN93MN264MD185MN51MN80M3D8MD398MN294MN34M4928H mismatches: 12 - insertions: 0 - deletions: 6
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297715777
      XM_002834189
    • Hit length
      1,177 bp
    • E Value
      0E0
    • BLAST Score
      1,893.9 bits
    • Similarity
      95.69%
    • Coverage
      0.73%
    • Alignment (schematic)

      SEQ ID NO 36
      0.73% cov
      XM_002834189
      100% cov
    • Alignment Length
      1,182 bp
    • CIGAR string
      52164H25MN3MN40MN6MN11MN10MN2MN7MN8MN4MN5MN72MN10MN21MN89MN20MI2MD4MN27MD27MNMN8MN10MN54MN23MN12MD6MN37MN30MN20MN5MN22MN28MN12MN15MN24MN25MN15MN7MN36MN10MN10MN9MNMN9MN34MI25MN42MDMN28MN174MD5M108681H mismatches: 44 - insertions: 2 - deletions: 5
Occurrence
26 times in PatSeqDB
Tools
SEQ ID NO
37
Length
1,350
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:6136944
      AJ242973
      1 of 15 hits reported for Homo sapiens.
    • Hit length
      1,350 bp
    • E Value
      0E0
    • BLAST Score
      2,494.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 37
      100% cov
      AJ242973
      100% cov
    • Alignment Length
      1,350 bp
    • CIGAR string
      1350M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862675
      XM_001138036
      1 of 3 hits reported for Pan troglodytes.
    • Hit length
      1,537 bp
    • E Value
      0E0
    • BLAST Score
      2,335.3 bits
    • Similarity
      98.14%
    • Coverage
      98.96%
    • Alignment (schematic)

      SEQ ID NO 37
      98.96% cov
      XM_001138036
      87.31% cov
    • Alignment Length
      1,342 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332244623
      XM_003271424
    • Hit length
      1,517 bp
    • E Value
      0E0
    • BLAST Score
      2,089.7 bits
    • Similarity
      95.07%
    • Coverage
      98.96%
    • Alignment (schematic)

      SEQ ID NO 37
      98.96% cov
      XM_003271424
      87.21% cov
    • Alignment Length
      1,339 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297298934
      XM_001089893
    • Hit length
      1,473 bp
    • E Value
      0E0
    • BLAST Score
      2,026.9 bits
    • Similarity
      94.41%
    • Coverage
      97.85%
    • Alignment (schematic)

      SEQ ID NO 37
      97.85% cov
      XM_001089893
      89.48% cov
    • Alignment Length
      1,324 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:84579080
      AB220441
    • Hit length
      1,455 bp
    • E Value
      0E0
    • BLAST Score
      2,001 bits
    • Similarity
      95.33%
    • Coverage
      93.41%
    • Alignment (schematic)

      SEQ ID NO 37
      93.41% cov
      AB220441
      86.6% cov
    • Alignment Length
      1,264 bp
Occurrence
19 times in PatSeqDB
Tools
SEQ ID NO
38
Length
235
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:6912516
      NP_036463
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      235 aa
    • E Value
      5.57E-138
    • BLAST Score
      495 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      NP_036463
      100% cov
    • Alignment Length
      235 aa
    • CIGAR string
      235M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:84579081
      BAE72974
    • Hit length
      235 aa
    • E Value
      1.32E-135
    • BLAST Score
      486.9 bits
    • Similarity
      99.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      BAE72974
      100% cov
    • Alignment Length
      235 aa
    • CIGAR string
      28MN98MN49MN21MN30MN4M mismatches: 5 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114623478
      XP_001138036
    • Hit length
      236 aa
    • E Value
      6.27E-134
    • BLAST Score
      481.5 bits
    • Similarity
      98.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      XP_001138036
      100% cov
    • Alignment Length
      236 aa
    • CIGAR string
      8MN2MI9MN106MN107M mismatches: 3 - insertions: 1 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332244624
      XP_003271472
    • Hit length
      235 aa
    • E Value
      4.45E-133
    • BLAST Score
      478.4 bits
    • Similarity
      97.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      XP_003271472
      100% cov
    • Alignment Length
      235 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109085621
      XP_001089893
    • Hit length
      233 aa
    • E Value
      1.93E-132
    • BLAST Score
      476.5 bits
    • Similarity
      99.14%
    • Coverage
      98.72%
    • Alignment (schematic)

      SEQ ID NO 38
      98.72% cov
      XP_001089893
      99.57% cov
    • Alignment Length
      232 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296221641
      XP_002756839
    • Hit length
      233 aa
    • E Value
      1.49E-128
    • BLAST Score
      463.4 bits
    • Similarity
      96.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      XP_002756839
      100% cov
    • Alignment Length
      235 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291385818
      XP_002709490
    • Hit length
      233 aa
    • E Value
      6.13E-122
    • BLAST Score
      441.4 bits
    • Similarity
      94.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      XP_002709490
      100% cov
    • Alignment Length
      235 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301766994
      XP_002918911
    • Hit length
      233 aa
    • E Value
      5.02E-121
    • BLAST Score
      438.3 bits
    • Similarity
      93.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      XP_002918911
      100% cov
    • Alignment Length
      235 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:109914952
      P54149
      1 of 3 hits reported for Bos taurus.
    • Hit length
      233 aa
    • E Value
      9.87E-121
    • BLAST Score
      437.6 bits
    • Similarity
      93.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      P54149
      100% cov
    • Alignment Length
      235 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:16758004
      NP_445759
    • Hit length
      233 aa
    • E Value
      1.45E-116
    • BLAST Score
      423.7 bits
    • Similarity
      90.64%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      NP_445759
      100% cov
    • Alignment Length
      235 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:31981013
      NP_080598
    • Hit length
      233 aa
    • E Value
      1.89E-116
    • BLAST Score
      423.3 bits
    • Similarity
      91.06%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      NP_080598
      100% cov
    • Alignment Length
      235 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311270421
      XP_001924212
    • Hit length
      233 aa
    • E Value
      2.2E-115
    • BLAST Score
      419.9 bits
    • Similarity
      90.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 38
      100% cov
      XP_001924212
      100% cov
    • Alignment Length
      235 aa
Occurrence
89 times in PatSeqDB
Tools
SEQ ID NO
39
Length
481
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:29126950
      BC047552
      1 of 19 hits reported for Homo sapiens.
    • Hit length
      1,722 bp
    • E Value
      0E0
    • BLAST Score
      854.3 bits
    • Similarity
      98.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 39
      100% cov
      BC047552
      27.82% cov
    • Alignment Length
      482 bp
    • CIGAR string
      105MD240MN2MN4MD5MIMD119M mismatches: 2 - insertions: 1 - deletions: 3
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862681
      XM_001138292
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      1,133 bp
    • E Value
      0E0
    • BLAST Score
      787.8 bits
    • Similarity
      96.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 39
      100% cov
      XM_001138292
      42.28% cov
    • Alignment Length
      483 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
40
Length
390
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:9963778
      AF183420
      1 of 19 hits reported for Homo sapiens.
    • Hit length
      1,343 bp
    • E Value
      0E0
    • BLAST Score
      682.5 bits
    • Similarity
      98.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 40
      100% cov
      AF183420
      28.67% cov
    • Alignment Length
      390 bp
    • CIGAR string
      128MD116MN5MD8MD48MD36MD43M mismatches: 1 - insertions: 0 - deletions: 5
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862681
      XM_001138292
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      1,133 bp
    • E Value
      6.58E-177
    • BLAST Score
      629 bits
    • Similarity
      96.35%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 40
      98.46% cov
      XM_001138292
      33.54% cov
    • Alignment Length
      384 bp
Occurrence
18 times in PatSeqDB
Tools

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