Methods For Generating Databases And Databases For Identifying Polymorphic Genetic Markers

Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
118 sequences found in this patent (in total)

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Displaying 11 - 20 of 118 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
11
Length
15
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
12
Length
15
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
13
Length
16
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
14
Length
17
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297663689
      XM_002810255
      1 of 3 hits reported for Pongo abelii.
    • Hit length
      1,513 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      XM_002810255
      1.12% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296198030
      XM_002746491
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      516 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      XM_002746491
      3.29% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Leishmania braziliensis MHOM/BR/75/M2904

    Leishmania braziliensis MHOM/BR/75/M2904

    • Public DB hit
      GI:322505382
      FR799006
    • Hit length
      1,550,184 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      FR799006
      0% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Sesamum indicum

    Sesamum indicum

    • Public DB hit
      GI:305644222
      HQ122995
    • Hit length
      962 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      HQ122995
      1.77% cov
    • Alignment Length
      17 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4467346
      AL022323
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      183,113 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      AL022323
      0.01% cov
    • Alignment Length
      17 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:60817271
      AY893379
    • Hit length
      495 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      AY893379
      3.43% cov
    • Alignment Length
      17 bp
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:40445467
      AC147717
    • Hit length
      189,841 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      AC147717
      0.01% cov
    • Alignment Length
      17 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
15
Length
205
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:210032137
      NG_008855
      1 of 17 hits reported for Homo sapiens.
    • Hit length
      35,189 bp
    • E Value
      3.56E-102
    • BLAST Score
      379.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 15
      100% cov
      NG_008855
      0.58% cov
    • Alignment Length
      205 bp
    • CIGAR string
      205M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332825654
      XM_001149804
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      4,048 bp
    • E Value
      3.56E-102
    • BLAST Score
      379.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 15
      100% cov
      XM_001149804
      5.06% cov
    • Alignment Length
      205 bp
    • CIGAR string
      205M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168275757
      AB384743
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,442 bp
    • E Value
      3.56E-102
    • BLAST Score
      379.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 15
      100% cov
      AB384743
      14.22% cov
    • Alignment Length
      205 bp
  • Pongo pygmaeus

    Pongo pygmaeus

    • Public DB hit
      GI:14599881
      AF358853
    • Hit length
      312 bp
    • E Value
      1.66E-100
    • BLAST Score
      374.1 bits
    • Similarity
      99.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 15
      100% cov
      AF358853
      65.71% cov
    • Alignment Length
      205 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
16
Length
42
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
17
Length
42
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
18
Length
20
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:210032137
      NG_008855
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      35,189 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 18
      100% cov
      NG_008855
      0.06% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332825654
      XM_001149804
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      4,048 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 18
      100% cov
      XM_001149804
      0.49% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332215297
      XM_003256730
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      4,046 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 18
      100% cov
      XM_003256730
      0.49% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297682392
      XM_002818859
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,574 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 18
      100% cov
      XM_002818859
      0.78% cov
    • Alignment Length
      20 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296221838
      XM_002756889
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      1,725 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 18
      100% cov
      XM_002756889
      1.16% cov
    • Alignment Length
      20 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:126723005
      NM_008509
      1 of 4 hits reported for Mus musculus.
    • Hit length
      4,049 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 18
      100% cov
      NM_008509
      0.49% cov
    • Alignment Length
      20 bp
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:162951949
      NM_001112612
    • Hit length
      3,563 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 18
      100% cov
      NM_001112612
      0.56% cov
    • Alignment Length
      20 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168275757
      AB384743
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,442 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 18
      100% cov
      AB384743
      1.39% cov
    • Alignment Length
      20 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:90081175
      AB173006
    • Hit length
      2,170 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 18
      100% cov
      AB173006
      0.92% cov
    • Alignment Length
      20 bp
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
19
Length
20
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:210032137
      NG_008855
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      35,189 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      NG_008855
      0.06% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332825654
      XM_001149804
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      4,048 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      XM_001149804
      0.49% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332215297
      XM_003256730
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      4,046 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      XM_003256730
      0.49% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297682392
      XM_002818859
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,574 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      XM_002818859
      0.78% cov
    • Alignment Length
      20 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296221838
      XM_002756889
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      1,725 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      XM_002756889
      1.16% cov
    • Alignment Length
      20 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:126723005
      NM_008509
      1 of 4 hits reported for Mus musculus.
    • Hit length
      4,049 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      NM_008509
      0.49% cov
    • Alignment Length
      20 bp
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:162951949
      NM_001112612
    • Hit length
      3,563 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      NM_001112612
      0.56% cov
    • Alignment Length
      20 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168275757
      AB384743
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,442 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      AB384743
      1.39% cov
    • Alignment Length
      20 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:90081175
      AB173006
    • Hit length
      2,170 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      AB173006
      0.92% cov
    • Alignment Length
      20 bp
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
20
Length
21
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:210032137
      NG_008855
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      35,189 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      NG_008855
      0.06% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332825654
      XM_001149804
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      4,048 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      XM_001149804
      0.52% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332215297
      XM_003256730
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      4,046 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      XM_003256730
      0.52% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297682392
      XM_002818859
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,574 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      XM_002818859
      0.82% cov
    • Alignment Length
      21 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296221838
      XM_002756889
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      1,725 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      XM_002756889
      1.22% cov
    • Alignment Length
      21 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:126723005
      NM_008509
      1 of 6 hits reported for Mus musculus.
    • Hit length
      4,049 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      NM_008509
      0.52% cov
    • Alignment Length
      21 bp
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:162951949
      NM_001112612
    • Hit length
      3,563 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      NM_001112612
      0.59% cov
    • Alignment Length
      21 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168275757
      AB384743
    • Hit length
      1,442 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      AB384743
      1.46% cov
    • Alignment Length
      21 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:90081175
      AB173006
    • Hit length
      2,170 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      AB173006
      0.97% cov
    • Alignment Length
      21 bp
Occurrence
18 times in PatSeqDB
Tools

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