Methods For Generating Databases And Databases For Identifying Polymorphic Genetic Markers

Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
118 sequences found in this patent (in total)

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Download sequences in fasta format: 3 peptides 115 nucleotides

Displaying 1 - 10 of 118 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
361
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:56157802
      AY838896
      1 of 20 hits reported for Homo sapiens.
    • Hit length
      23,164 bp
    • E Value
      0E0
    • BLAST Score
      667.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AY838896
      1.56% cov
    • Alignment Length
      361 bp
    • CIGAR string
      361M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:261857817
      AB527267
      1 of 4 hits reported for synthetic construct.
    • Hit length
      1,196 bp
    • E Value
      1.37E-143
    • BLAST Score
      518.2 bits
    • Similarity
      100%
    • Coverage
      77.56%
    • Alignment (schematic)

      SEQ ID NO 1
      77.56% cov
      AB527267
      23.41% cov
    • Alignment Length
      280 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
2
Length
44
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
3
Length
42
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
4
Length
17
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:293651587
      NG_017013
      1 of 16 hits reported for Homo sapiens.
    • Hit length
      26,144 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NG_017013
      0.07% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332847219
      XM_003315360
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      2,652 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_003315360
      0.64% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Toxoplasma gondii ME49

    Toxoplasma gondii ME49

    • Public DB hit
      GI:237843038
      XM_002370776
      1 of 2 hits reported for Toxoplasma gondii ME49.
    • Hit length
      11,454 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002370776
      0.15% cov
    • Alignment Length
      17 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:261857817
      AB527267
    • Hit length
      1,196 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AB527267
      1.42% cov
    • Alignment Length
      17 bp
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
5
Length
17
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:293651587
      NG_017013
      1 of 16 hits reported for Homo sapiens.
    • Hit length
      26,144 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NG_017013
      0.07% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332847219
      XM_003315360
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      2,652 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_003315360
      0.64% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Toxoplasma gondii ME49

    Toxoplasma gondii ME49

    • Public DB hit
      GI:237843038
      XM_002370776
      1 of 2 hits reported for Toxoplasma gondii ME49.
    • Hit length
      11,454 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_002370776
      0.15% cov
    • Alignment Length
      17 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:261857817
      AB527267
    • Hit length
      1,196 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AB527267
      1.42% cov
    • Alignment Length
      17 bp
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
6
Length
19
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:332330352
      HQ457168
      1 of 20 hits reported for Homo sapiens.
    • Hit length
      252 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ457168
      7.54% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:261857817
      AB527267
      1 of 4 hits reported for synthetic construct.
    • Hit length
      1,196 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AB527267
      1.59% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:157694627
      AC192208
    • Hit length
      158,948 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AC192208
      0.01% cov
    • Alignment Length
      19 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
7
Length
18
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:293651587
      NG_017013
      1 of 16 hits reported for Homo sapiens.
    • Hit length
      26,144 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NG_017013
      0.07% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332847219
      XM_003315360
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      2,652 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003315360
      0.68% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Toxoplasma gondii ME49

    Toxoplasma gondii ME49

    • Public DB hit
      GI:237843038
      XM_002370776
      1 of 2 hits reported for Toxoplasma gondii ME49.
    • Hit length
      11,454 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002370776
      0.16% cov
    • Alignment Length
      18 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:45774249
      AC129189
    • Hit length
      152,947 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AC129189
      0.01% cov
    • Alignment Length
      18 bp
Occurrence
25 times in PatSeqDB
Tools
SEQ ID NO
8
Length
161
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:221139857
      NG_009364
      1 of 22 hits reported for Homo sapiens.
    • Hit length
      15,651 bp
    • E Value
      7.66E-78
    • BLAST Score
      298.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NG_009364
      1.03% cov
    • Alignment Length
      161 bp
    • CIGAR string
      161M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:117644614
      AM392920
      1 of 3 hits reported for synthetic construct.
    • Hit length
      540 bp
    • E Value
      7.66E-78
    • BLAST Score
      298.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AM392920
      29.81% cov
    • Alignment Length
      161 bp
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
9
Length
43
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
18 times in PatSeqDB
Tools
SEQ ID NO
10
Length
44
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:15088643
      AF394911
    • Hit length
      93 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 10
      63.64% cov
      AF394911
      30.11% cov
    • Alignment Length
      28 bp
    • CIGAR string
      28M16H mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
18 times in PatSeqDB
Tools

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