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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
140 sequences found in this patent (in total)

Displaying 1 - 10 of 140 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,164
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Ricinus communis

Determined organism:
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255574427
      XM_002528081
      1 of 3 hits reported for Ricinus communis.
    • Hit length
      1,897 bp
    • E Value
      0E0
    • BLAST Score
      2,145.1 bits
    • Similarity
      99.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_002528081
      61.36% cov
    • Alignment Length
      1,164 bp
    • CIGAR string
      1037MN126M mismatches: 1 - insertions: 0 - deletions: 0
  • Caragana korshinskii

    Caragana korshinskii

    • Public DB hit
      GI:168014137
      EU433557
    • Hit length
      1,143 bp
    • E Value
      1.04E-124
    • BLAST Score
      457.2 bits
    • Similarity
      75.27%
    • Coverage
      92.1%
    • Alignment (schematic)

      SEQ ID NO 1
      92.1% cov
      EU433557
      93.79% cov
    • Alignment Length
      1,112 bp
  • Gossypium hirsutum

    Gossypium hirsutum

    • Public DB hit
      GI:310657310
      HQ259410
      1 of 2 hits reported for Gossypium hirsutum.
    • Hit length
      1,362 bp
    • E Value
      3.03E-90
    • BLAST Score
      342.8 bits
    • Similarity
      75.03%
    • Coverage
      72.85%
    • Alignment (schematic)

      SEQ ID NO 1
      72.85% cov
      HQ259410
      62.26% cov
    • Alignment Length
      885 bp
Occurrence
21 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
1,155
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Physaria fendleri

Determined organism:
  • Physaria fendleri

    Physaria fendleri

    • Public DB hit
      GI:3452128
      AF016103
      1 of 3 hits reported for Physaria fendleri.
    • Hit length
      3,670 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      99.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AF016103
      31.47% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      131MD4MI160MN288MN76MN5MN176MN65MN14MN2MN200MN24M mismatches: 9 - insertions: 1 - deletions: 1
  • Physaria lindheimeri

    Physaria lindheimeri

    • Public DB hit
      GI:146141440
      EF432246
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,587.4 bits
    • Similarity
      91.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EF432246
      100% cov
    • Alignment Length
      1,160 bp
  • Camelina hispida

    Camelina hispida

    • Public DB hit
      GI:306976239
      GU929426
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,175.6 bits
    • Similarity
      85.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU929426
      100% cov
    • Alignment Length
      1,172 bp
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:21403255
      AY084545
      1 of 11 hits reported for Arabidopsis thaliana.
    • Hit length
      1,451 bp
    • E Value
      0E0
    • BLAST Score
      1,146 bits
    • Similarity
      84.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY084545
      79.39% cov
    • Alignment Length
      1,169 bp
  • Camelina rumelica

    Camelina rumelica

    • Public DB hit
      GI:306976249
      GU929438
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,142.3 bits
    • Similarity
      84.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU929438
      100% cov
    • Alignment Length
      1,173 bp
  • Camelina microcarpa

    Camelina microcarpa

    • Public DB hit
      GI:306976247
      GU929434
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,136.8 bits
    • Similarity
      84.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU929434
      100% cov
    • Alignment Length
      1,176 bp
  • Camelina sativa

    Camelina sativa

    • Public DB hit
      GI:306976233
      GU929419
      1 of 4 hits reported for Camelina sativa.
    • Hit length
      2,725 bp
    • E Value
      0E0
    • BLAST Score
      1,136.8 bits
    • Similarity
      84.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU929419
      42.39% cov
    • Alignment Length
      1,176 bp
  • Camelina laxa

    Camelina laxa

    • Public DB hit
      GI:306976241
      GU929429
    • Hit length
      1,158 bp
    • E Value
      0E0
    • BLAST Score
      1,127.6 bits
    • Similarity
      85.06%
    • Coverage
      97.14%
    • Alignment (schematic)

      SEQ ID NO 2
      97.14% cov
      GU929429
      96.63% cov
    • Alignment Length
      1,138 bp
  • Arabidopsis lyrata

    Arabidopsis lyrata

    • Public DB hit
      GI:306976237
      GU929424
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,122 bits
    • Similarity
      84.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU929424
      100% cov
    • Alignment Length
      1,171 bp
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834001
      XM_002884837
    • Hit length
      1,566 bp
    • E Value
      0E0
    • BLAST Score
      1,116.5 bits
    • Similarity
      84.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_002884837
      73.56% cov
    • Alignment Length
      1,171 bp
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,152
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Physaria lindheimeri

Determined organism:
  • Physaria lindheimeri

    Physaria lindheimeri

    • Public DB hit
      GI:146141440
      EF432246
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      2,062 bits
    • Similarity
      98.96%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF432246
      100% cov
    • Alignment Length
      1,152 bp
    • CIGAR string
      344MN51MN31MN152MN35MN50MN91MN3MN13MN129MN50MN167MN24M mismatches: 12 - insertions: 0 - deletions: 0
  • Physaria fendleri

    Physaria fendleri

    • Public DB hit
      GI:228481016
      FJ904269
      1 of 4 hits reported for Physaria fendleri.
    • Hit length
      1,330 bp
    • E Value
      0E0
    • BLAST Score
      1,637.3 bits
    • Similarity
      92.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FJ904269
      86.84% cov
    • Alignment Length
      1,159 bp
    • CIGAR string
      47MI4MD12MN6MN3MN23MN7MI2MD14MN12MN14MN11MN16MN5MN18MN5MN11MN8MN18MNMN45MNMN29MN5MN15MN23MN5MN4MN2MN3MN19MN2MN18MN4MN8MN7MN24MN23MN28MNMN9MN3MN6MN7MN5MN5MN11MN12MD2MI29MN8MN5MN2MN11MN5MN9MN46MN3MN2MN10MN20MN5MNMNMN2MN52MN29MN14M2N25MN20MN32MI3MD5MN50MN2MN2MN8MN14MN11MN18MN18MN6MN3M2NIM2I11MN24M mismatches: 78 - insertions: 7 - deletions: 4
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:21403255
      AY084545
      1 of 12 hits reported for Arabidopsis thaliana.
    • Hit length
      1,451 bp
    • E Value
      0E0
    • BLAST Score
      1,083.3 bits
    • Similarity
      83.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AY084545
      79.39% cov
    • Alignment Length
      1,167 bp
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834001
      XM_002884837
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      1,566 bp
    • E Value
      0E0
    • BLAST Score
      1,064.8 bits
    • Similarity
      83.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002884837
      73.56% cov
    • Alignment Length
      1,168 bp
  • Arabidopsis lyrata

    Arabidopsis lyrata

    • Public DB hit
      GI:306976237
      GU929424
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,064.8 bits
    • Similarity
      83.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      GU929424
      100% cov
    • Alignment Length
      1,168 bp
  • Capsella rubella

    Capsella rubella

    • Public DB hit
      GI:306976235
      GU929423
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,048.2 bits
    • Similarity
      83.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      GU929423
      100% cov
    • Alignment Length
      1,171 bp
  • Descurainia sophia

    Descurainia sophia

    • Public DB hit
      GI:315936310
      EF524190
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      992.8 bits
    • Similarity
      82.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF524190
      100% cov
    • Alignment Length
      1,172 bp
  • Rorippa indica

    Rorippa indica

    • Public DB hit
      GI:102230696
      DQ518318
      1 of 2 hits reported for Rorippa indica.
    • Hit length
      780 bp
    • E Value
      0E0
    • BLAST Score
      669.6 bits
    • Similarity
      82.47%
    • Coverage
      67.8%
    • Alignment (schematic)

      SEQ ID NO 3
      67.8% cov
      DQ518318
      99.74% cov
    • Alignment Length
      793 bp
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
1,155
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Lesquerella gracilis A

Determined organism:
  • Physaria lindheimeri

    Physaria lindheimeri

    • Public DB hit
      GI:146141440
      EF432246
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,725.9 bits
    • Similarity
      93.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EF432246
      100% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      26MN11MN15MN16MN3MN23MN7MD2MI14MN27MN8MN2MN12MN5MN25MN2MN11MN5MN9MN6MN4MNMN18MN58MN5MN5MN39MN10MN23MN8MN9MN4MN8MN7MN15MN5MN26MN2MN56MN5MN30MN22MN5MN2MN16MN6MN68MN3MN24MN3MN2MN2MN5MN3MN2MNMN2MN11MN2MN62MN15MN76M2N91MN11MN5MN12MN29M2NDM2D11MN24M mismatches: 68 - insertions: 1 - deletions: 4
  • Physaria fendleri

    Physaria fendleri

    • Public DB hit
      GI:228481016
      FJ904269
      1 of 3 hits reported for Physaria fendleri.
    • Hit length
      1,330 bp
    • E Value
      0E0
    • BLAST Score
      1,724 bits
    • Similarity
      93.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      FJ904269
      86.84% cov
    • Alignment Length
      1,158 bp
    • CIGAR string
      26MN11MN8MI4MD2MN9MN59MN12MN14MN8MN15MN3MI2MD3MN18MN2MN20MN2MN6MN6MN6MN18MN26MNMN51MN23MN10MN2MN2MN20MN35MN23MN5MN2MN26MN25MNMN9MN3MN6MN31MN14MN8MN11MN5MN11MN5MNM2N5MN11MN9MN53MN10MN17MN17MN2MN11MN2MN32MN44MN47MN30MNMI3MD5MN50MN2MN2MN8MN32MN31MN6MN20MN24M mismatches: 68 - insertions: 3 - deletions: 3
  • Camelina hispida

    Camelina hispida

    • Public DB hit
      GI:306976239
      GU929426
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,149.7 bits
    • Similarity
      85.36%
    • Coverage
      97.14%
    • Alignment (schematic)

      SEQ ID NO 4
      97.14% cov
      GU929426
      96.88% cov
    • Alignment Length
      1,134 bp
  • Camelina rumelica

    Camelina rumelica

    • Public DB hit
      GI:306976249
      GU929438
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,122 bits
    • Similarity
      84.92%
    • Coverage
      97.14%
    • Alignment (schematic)

      SEQ ID NO 4
      97.14% cov
      GU929438
      96.88% cov
    • Alignment Length
      1,134 bp
  • Camelina sativa

    Camelina sativa

    • Public DB hit
      GI:306976231
      GU929418
      1 of 5 hits reported for Camelina sativa.
    • Hit length
      3,875 bp
    • E Value
      0E0
    • BLAST Score
      1,122 bits
    • Similarity
      84.96%
    • Coverage
      97.14%
    • Alignment (schematic)

      SEQ ID NO 4
      97.14% cov
      GU929418
      28.88% cov
    • Alignment Length
      1,137 bp
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:21403255
      AY084545
      1 of 11 hits reported for Arabidopsis thaliana.
    • Hit length
      1,451 bp
    • E Value
      0E0
    • BLAST Score
      1,118.3 bits
    • Similarity
      84.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY084545
      79.39% cov
    • Alignment Length
      1,167 bp
  • Camelina laxa

    Camelina laxa

    • Public DB hit
      GI:306976241
      GU929429
    • Hit length
      1,158 bp
    • E Value
      0E0
    • BLAST Score
      1,111 bits
    • Similarity
      84.76%
    • Coverage
      97.14%
    • Alignment (schematic)

      SEQ ID NO 4
      97.14% cov
      GU929429
      96.63% cov
    • Alignment Length
      1,135 bp
  • Camelina microcarpa

    Camelina microcarpa

    • Public DB hit
      GI:306976243
      GU929432
      1 of 2 hits reported for Camelina microcarpa.
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,099.9 bits
    • Similarity
      84.61%
    • Coverage
      97.14%
    • Alignment (schematic)

      SEQ ID NO 4
      97.14% cov
      GU929432
      96.88% cov
    • Alignment Length
      1,137 bp
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
1,155
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Lesquerella gracilis B

Determined organism:
  • Physaria fendleri

    Physaria fendleri

    • Public DB hit
      GI:3452128
      AF016103
      1 of 3 hits reported for Physaria fendleri.
    • Hit length
      3,670 bp
    • E Value
      0E0
    • BLAST Score
      2,017.7 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AF016103
      31.47% cov
    • Alignment Length
      1,157 bp
    • CIGAR string
      32MN98MD6MI153MN4MN12MN44MN34MN166MN105MN5MN80MN95MN59MN5MN14MN2MN32MI3MD71MN26MN90M mismatches: 17 - insertions: 2 - deletions: 2
  • Physaria lindheimeri

    Physaria lindheimeri

    • Public DB hit
      GI:146141440
      EF432246
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,592.9 bits
    • Similarity
      91.63%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EF432246
      100% cov
    • Alignment Length
      1,159 bp
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:21403255
      AY084545
      1 of 11 hits reported for Arabidopsis thaliana.
    • Hit length
      1,451 bp
    • E Value
      0E0
    • BLAST Score
      1,162.7 bits
    • Similarity
      85.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY084545
      79.39% cov
    • Alignment Length
      1,168 bp
  • Camelina sativa

    Camelina sativa

    • Public DB hit
      GI:315435717
      HQ008322
    • Hit length
      2,755 bp
    • E Value
      0E0
    • BLAST Score
      1,142.3 bits
    • Similarity
      84.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      HQ008322
      41.92% cov
    • Alignment Length
      1,173 bp
  • Camelina laxa

    Camelina laxa

    • Public DB hit
      GI:306976241
      GU929429
    • Hit length
      1,158 bp
    • E Value
      0E0
    • BLAST Score
      1,136.8 bits
    • Similarity
      85.15%
    • Coverage
      97.32%
    • Alignment (schematic)

      SEQ ID NO 5
      97.32% cov
      GU929429
      96.8% cov
    • Alignment Length
      1,138 bp
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834001
      XM_002884837
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      1,566 bp
    • E Value
      0E0
    • BLAST Score
      1,133.1 bits
    • Similarity
      84.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_002884837
      73.56% cov
    • Alignment Length
      1,169 bp
  • Arabidopsis lyrata

    Arabidopsis lyrata

    • Public DB hit
      GI:306976237
      GU929424
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,133.1 bits
    • Similarity
      84.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU929424
      100% cov
    • Alignment Length
      1,169 bp
  • Camelina rumelica

    Camelina rumelica

    • Public DB hit
      GI:306976251
      GU929439
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,125.7 bits
    • Similarity
      84.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU929439
      100% cov
    • Alignment Length
      1,174 bp
  • Camelina microcarpa

    Camelina microcarpa

    • Public DB hit
      GI:306976245
      GU929433
    • Hit length
      1,158 bp
    • E Value
      0E0
    • BLAST Score
      1,105.4 bits
    • Similarity
      84.17%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU929433
      100% cov
    • Alignment Length
      1,175 bp
  • Capsella rubella

    Capsella rubella

    • Public DB hit
      GI:306976235
      GU929423
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,105.4 bits
    • Similarity
      84.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU929423
      100% cov
    • Alignment Length
      1,167 bp
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:299929219
      HM138373
    • Hit length
      2,734 bp
    • E Value
      0E0
    • BLAST Score
      780.4 bits
    • Similarity
      79.23%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      HM138373
      42.17% cov
    • Alignment Length
      1,175 bp
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
1,125
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Crepis biennis

Determined organism:
  • Crepis palaestina

    Crepis palaestina

    • Public DB hit
      GI:3135017
      Y16283
    • Hit length
      1,358 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      Y16283
      82.84% cov
    • Alignment Length
      1,127 bp
    • CIGAR string
      9M2N3MNMN6MN6MN25MN12MN7MN2MN5MN2MN30MN7MN5MN14MN5MN36MNMNMN6MN2MNMN3MN3MN2M2N22MN23MN10MN14MN2MN5MN18MNMN2MD2MI4MN22M2N31MN7MN19MN13MN2MN46MN2MN21MN8MN5MN3MN2MN58MN47MN23MN14MN8MN32MN11MN5MN5MN15MNM2N14MN8MNMN5MNMN24MN11MN29MN26MN3MN34MN12MN28MD4MI19M2N5MNMN7MN12MN14MN6MN12MN2MN3MN28MN9MN8MN12M mismatches: 88 - insertions: 2 - deletions: 2
  • Crepis alpina

    Crepis alpina

    • Public DB hit
      GI:83272390
      DQ289485
      1 of 2 hits reported for Crepis alpina.
    • Hit length
      1,131 bp
    • E Value
      0E0
    • BLAST Score
      1,277.2 bits
    • Similarity
      87.49%
    • Coverage
      98.93%
    • Alignment (schematic)

      SEQ ID NO 6
      98.93% cov
      DQ289485
      98.67% cov
    • Alignment Length
      1,127 bp
    • CIGAR string
      12H4MN6MN2MN3MN5MNM2N16MN8M3D7MIN2MDMN6MNMN27MN10MN8MN8M2N4MN6MI2MD5MN26MN5MN17MN12MNMN41MN2MN6MN2MN7MN20MN5MN5MN26M2N7MN6MNMN14MN11MN8MN16MN3MIMNMD2MN17MN2MN9MN5MN8MI2MD6MN4MN3MN4MN5MN8MIMD5MD2MI4M2N11MN2MN3MN10MN2MN20MN2MN14MN17MN8MN2MN23MN24MN4MN3MN5MN4MN6M2N6MN2MN2MN6MN4MN2MN2MN3MN4MIMNMND7MN4MNMN16MN19MN5MDMI11MN3MN14MN10MN6MN23MN10M2N25MN9MN31MN20MN3MN2MNMN7MN5MN19MN8MN25MNMN12MNM2IM2N2MNM3IMN4MI13MN7MN3M mismatches: 116 - insertions: 14 - deletions: 11
  • Helianthus annuus

    Helianthus annuus

    • Public DB hit
      GI:31322134
      AY166773
      1 of 2 hits reported for Helianthus annuus.
    • Hit length
      1,419 bp
    • E Value
      0E0
    • BLAST Score
      758.2 bits
    • Similarity
      79.82%
    • Coverage
      95.82%
    • Alignment (schematic)

      SEQ ID NO 6
      95.82% cov
      AY166773
      76.18% cov
    • Alignment Length
      1,105 bp
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
1,152
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Ricinus communis

Determined organism:
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255574427
      XM_002528081
      1 of 3 hits reported for Ricinus communis.
    • Hit length
      1,897 bp
    • E Value
      0E0
    • BLAST Score
      1,919.8 bits
    • Similarity
      98.97%
    • Coverage
      93.06%
    • Alignment (schematic)

      SEQ ID NO 7
      93.06% cov
      XM_002528081
      56.51% cov
    • Alignment Length
      1,072 bp
    • CIGAR string
      80H3MN2MN6MNM2NMN2MN2MN2MN4MN912MN126M mismatches: 11 - insertions: 0 - deletions: 0
  • Caragana korshinskii

    Caragana korshinskii

    • Public DB hit
      GI:168014137
      EU433557
    • Hit length
      1,143 bp
    • E Value
      1.03E-119
    • BLAST Score
      440.6 bits
    • Similarity
      75.25%
    • Coverage
      90.19%
    • Alignment (schematic)

      SEQ ID NO 7
      90.19% cov
      EU433557
      90.9% cov
    • Alignment Length
      1,079 bp
  • Gossypium hirsutum

    Gossypium hirsutum

    • Public DB hit
      GI:310657310
      HQ259410
      1 of 2 hits reported for Gossypium hirsutum.
    • Hit length
      1,362 bp
    • E Value
      3E-90
    • BLAST Score
      342.8 bits
    • Similarity
      75.03%
    • Coverage
      73.61%
    • Alignment (schematic)

      SEQ ID NO 7
      73.61% cov
      HQ259410
      62.26% cov
    • Alignment Length
      885 bp
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
1,155
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Physaria fendleri

Determined organism:
  • Physaria fendleri

    Physaria fendleri

    • Public DB hit
      GI:3452128
      AF016103
      1 of 3 hits reported for Physaria fendleri.
    • Hit length
      3,670 bp
    • E Value
      0E0
    • BLAST Score
      1,929 bits
    • Similarity
      96.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF016103
      31.47% cov
    • Alignment Length
      1,160 bp
    • CIGAR string
      8MN11M3N4MI2MDNMN14MN5MN2MDMI2MDMI3MN4MDMI2MN2MN8MN2MN3MNMN2M3N30MD4MI160MN288MN76MN5MN176MN65MN14MN2MN200MN24M mismatches: 27 - insertions: 5 - deletions: 5
  • Physaria lindheimeri

    Physaria lindheimeri

    • Public DB hit
      GI:146141440
      EF432246
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,476.6 bits
    • Similarity
      89.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EF432246
      100% cov
    • Alignment Length
      1,164 bp
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:21403255
      AY084545
      1 of 11 hits reported for Arabidopsis thaliana.
    • Hit length
      1,451 bp
    • E Value
      0E0
    • BLAST Score
      1,290.1 bits
    • Similarity
      86.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY084545
      79.39% cov
    • Alignment Length
      1,165 bp
  • Arabidopsis lyrata

    Arabidopsis lyrata

    • Public DB hit
      GI:306976237
      GU929424
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,255 bits
    • Similarity
      86.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      GU929424
      100% cov
    • Alignment Length
      1,168 bp
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834001
      XM_002884837
    • Hit length
      1,566 bp
    • E Value
      0E0
    • BLAST Score
      1,249.5 bits
    • Similarity
      86.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_002884837
      73.56% cov
    • Alignment Length
      1,168 bp
  • Camelina hispida

    Camelina hispida

    • Public DB hit
      GI:306976239
      GU929426
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,247.6 bits
    • Similarity
      86.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      GU929426
      100% cov
    • Alignment Length
      1,169 bp
  • Camelina rumelica

    Camelina rumelica

    • Public DB hit
      GI:306976249
      GU929438
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,208.8 bits
    • Similarity
      85.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      GU929438
      100% cov
    • Alignment Length
      1,171 bp
  • Camelina microcarpa

    Camelina microcarpa

    • Public DB hit
      GI:306976247
      GU929434
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      85.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      GU929434
      100% cov
    • Alignment Length
      1,173 bp
  • Camelina sativa

    Camelina sativa

    • Public DB hit
      GI:306976233
      GU929419
      1 of 4 hits reported for Camelina sativa.
    • Hit length
      2,725 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      85.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      GU929419
      42.39% cov
    • Alignment Length
      1,173 bp
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
1,152
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Physaria lindheimeri

Determined organism:
  • Physaria lindheimeri

    Physaria lindheimeri

    • Public DB hit
      GI:146141440
      EF432246
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,917.9 bits
    • Similarity
      96.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      EF432246
      100% cov
    • Alignment Length
      1,157 bp
    • CIGAR string
      8MN11M3N4MI2MDNMN14MD6MI2MDMI2MDMN3MI4MN3MIMDMN8MN2MN3MNMN2M3N243MN51MN31MN152MN35MN50MN91MN3MN13MN129MN50MN167MN24M mismatches: 28 - insertions: 5 - deletions: 5
  • Physaria fendleri

    Physaria fendleri

    • Public DB hit
      GI:228481016
      FJ904269
      1 of 3 hits reported for Physaria fendleri.
    • Hit length
      1,330 bp
    • E Value
      0E0
    • BLAST Score
      1,526.5 bits
    • Similarity
      90.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      FJ904269
      86.84% cov
    • Alignment Length
      1,162 bp
    • CIGAR string
      8MN11M3N4MI2MDNMN14MN5MN2MDMI2MDMI3MN4MDMI2MN2MN8MN2MN3MNMN2M3N6MI2MD14MN12MN14MN11MN16MN5MN18MN5MN11MN8MN18MNMN45MNMN29MN5MN15MN23MN5MN4MN2MN3MN19MN2MN18MN4MN8MN7MN24MN23MN28MNMN9MN3MN6MN7MN5MN5MN11MN12MD2MI29MN8MN5MN2MN11MN5MN9MN46MN3MN2MN10MN20MN5MNMNMN2MN52MN29MN14M2N25MN20MN32MI3MD5MN50MN2MN2MN8MN14MN11MN18MN18MN6MN3M2NIM2I11MN24M mismatches: 92 - insertions: 10 - deletions: 7
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:21403255
      AY084545
      1 of 11 hits reported for Arabidopsis thaliana.
    • Hit length
      1,451 bp
    • E Value
      0E0
    • BLAST Score
      1,227.3 bits
    • Similarity
      85.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AY084545
      79.39% cov
    • Alignment Length
      1,162 bp
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834001
      XM_002884837
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      1,566 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      85.64%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_002884837
      73.56% cov
    • Alignment Length
      1,163 bp
  • Arabidopsis lyrata

    Arabidopsis lyrata

    • Public DB hit
      GI:306976237
      GU929424
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      85.64%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      GU929424
      100% cov
    • Alignment Length
      1,163 bp
  • Camelina microcarpa

    Camelina microcarpa

    • Public DB hit
      GI:306976247
      GU929434
      1 of 2 hits reported for Camelina microcarpa.
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,144.2 bits
    • Similarity
      84.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      GU929434
      100% cov
    • Alignment Length
      1,173 bp
  • Camelina sativa

    Camelina sativa

    • Public DB hit
      GI:306976233
      GU929419
      1 of 2 hits reported for Camelina sativa.
    • Hit length
      2,725 bp
    • E Value
      0E0
    • BLAST Score
      1,144.2 bits
    • Similarity
      84.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      GU929419
      42.39% cov
    • Alignment Length
      1,173 bp
  • Capsella rubella

    Capsella rubella

    • Public DB hit
      GI:306976235
      GU929423
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,136.8 bits
    • Similarity
      84.66%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      GU929423
      100% cov
    • Alignment Length
      1,167 bp
  • Camelina rumelica

    Camelina rumelica

    • Public DB hit
      GI:306976251
      GU929439
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,105.4 bits
    • Similarity
      84.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      GU929439
      100% cov
    • Alignment Length
      1,170 bp
  • Descurainia sophia

    Descurainia sophia

    • Public DB hit
      GI:315936310
      EF524190
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,098 bits
    • Similarity
      84.06%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      EF524190
      100% cov
    • Alignment Length
      1,167 bp
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
1,155
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Lesquerella gracilis A

Determined organism:
  • Physaria lindheimeri

    Physaria lindheimeri

    • Public DB hit
      GI:146141440
      EF432246
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,615.1 bits
    • Similarity
      91.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EF432246
      100% cov
    • Alignment Length
      1,161 bp
    • CIGAR string
      8MN11M3N4MI2MDNMN14MD6MI2MDMI2MDMN3MI4MN3MIMDMN8MN2MN3MNMN2M3N6MD2MI14MN27MN8MN2MN12MN5MN25MN2MN11MN5MN9MN6MN4MNMN18MN58MN5MN5MN39MN10MN23MN8MN9MN4MN8MN7MN15MN5MN26MN2MN56MN5MN30MN22MN5MN2MN16MN6MN68MN3MN24MN3MN2MN2MN5MN3MN2MNMN2MN11MN2MN62MN15MN76M2N91MN11MN5MN12MN29M2NDM2D11MN24M mismatches: 78 - insertions: 6 - deletions: 9
  • Physaria fendleri

    Physaria fendleri

    • Public DB hit
      GI:228481016
      FJ904269
      1 of 3 hits reported for Physaria fendleri.
    • Hit length
      1,330 bp
    • E Value
      0E0
    • BLAST Score
      1,613.2 bits
    • Similarity
      91.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      FJ904269
      86.84% cov
    • Alignment Length
      1,161 bp
    • CIGAR string
      8MN11M3N4MI2MDNMN14MN5MN2MDMI2MDMI3MN4MDMI2MN2MN8MN2MN3MNMN2M3N23MN12MN14MN8MN15MN3MI2MD3MN18MN2MN20MN2MN6MN6MN6MN18MN26MNMN51MN23MN10MN2MN2MN20MN35MN23MN5MN2MN26MN25MNMN9MN3MN6MN31MN14MN8MN11MN5MN11MN5MNM2N5MN11MN9MN53MN10MN17MN17MN2MN11MN2MN32MN44MN47MN30MNMI3MD5MN50MN2MN2MN8MN32MN31MN6MN20MN24M mismatches: 82 - insertions: 6 - deletions: 6
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:21403255
      AY084545
      1 of 11 hits reported for Arabidopsis thaliana.
    • Hit length
      1,451 bp
    • E Value
      0E0
    • BLAST Score
      1,279 bits
    • Similarity
      86.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY084545
      79.39% cov
    • Alignment Length
      1,162 bp
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834001
      XM_002884837
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      1,566 bp
    • E Value
      0E0
    • BLAST Score
      1,243.9 bits
    • Similarity
      86.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_002884837
      73.56% cov
    • Alignment Length
      1,163 bp
  • Arabidopsis lyrata

    Arabidopsis lyrata

    • Public DB hit
      GI:306976237
      GU929424
    • Hit length
      1,152 bp
    • E Value
      0E0
    • BLAST Score
      1,243.9 bits
    • Similarity
      86.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      GU929424
      100% cov
    • Alignment Length
      1,163 bp
  • Camelina hispida

    Camelina hispida

    • Public DB hit
      GI:306976239
      GU929426
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,236.5 bits
    • Similarity
      86.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      GU929426
      100% cov
    • Alignment Length
      1,166 bp
  • Camelina rumelica

    Camelina rumelica

    • Public DB hit
      GI:306976249
      GU929438
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,208.8 bits
    • Similarity
      85.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      GU929438
      100% cov
    • Alignment Length
      1,167 bp
  • Camelina sativa

    Camelina sativa

    • Public DB hit
      GI:306976231
      GU929418
      1 of 4 hits reported for Camelina sativa.
    • Hit length
      3,875 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      85.63%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      GU929418
      29.81% cov
    • Alignment Length
      1,169 bp
  • Camelina microcarpa

    Camelina microcarpa

    • Public DB hit
      GI:306976247
      GU929434
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,192.2 bits
    • Similarity
      85.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      GU929434
      100% cov
    • Alignment Length
      1,174 bp
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder

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