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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
133 sequences found in this patent (in total)

Displaying 1 - 10 of 133 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
58,857
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Streptomyces verticillus

Determined organism:
  • Streptomyces verticillus

    Streptomyces verticillus

    • Public DB hit
      GI:9937210
      AF210249
      1 of 2 hits reported for Streptomyces verticillus.
    • Hit length
      77,457 bp
    • E Value
      0E0
    • BLAST Score
      108,689.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF210249
      75.99% cov
    • Alignment Length
      58,857 bp
    • CIGAR string
      58857M mismatches: 0 - insertions: 0 - deletions: 0
  • Streptoalloteichus hindustanus

    Streptoalloteichus hindustanus

    • Public DB hit
      GI:119433766
      EF032505
    • Hit length
      80,158 bp
    • E Value
      0E0
    • BLAST Score
      3,018.5 bits
    • Similarity
      78.75%
    • Coverage
      8.13%
    • Alignment (schematic)

      SEQ ID NO 1
      8.13% cov
      EF032505
      5.97% cov
    • Alignment Length
      4,946 bp
  • Actinosynnema mirum DSM 43827

    Actinosynnema mirum DSM 43827

    • Public DB hit
      GI:255918463
      CP001630
    • Hit length
      8,248,144 bp
    • E Value
      0E0
    • BLAST Score
      1,511.7 bits
    • Similarity
      76.55%
    • Coverage
      5.17%
    • Alignment (schematic)

      SEQ ID NO 1
      5.17% cov
      CP001630
      0.04% cov
    • Alignment Length
      3,152 bp
  • Streptomyces mobaraensis NBRC 13819 = DSM 40847

    Streptomyces mobaraensis NBRC 13819 = DSM 40847

    • Public DB hit
      GI:238769928
      AB432492
    • Hit length
      731 bp
    • E Value
      0E0
    • BLAST Score
      1,343.6 bits
    • Similarity
      99.86%
    • Coverage
      1.24%
    • Alignment (schematic)

      SEQ ID NO 1
      1.24% cov
      AB432492
      99.86% cov
    • Alignment Length
      730 bp
  • Streptomyces bingchenggensis BCW-1

    Streptomyces bingchenggensis BCW-1

    • Public DB hit
      GI:297153409
      CP002047
    • Hit length
      11,936,683 bp
    • E Value
      0E0
    • BLAST Score
      1,147.9 bits
    • Similarity
      79.05%
    • Coverage
      3%
    • Alignment (schematic)

      SEQ ID NO 1
      3% cov
      CP002047
      0.01% cov
    • Alignment Length
      1,814 bp
  • Streptomyces flavoviridis

    Streptomyces flavoviridis

    • Public DB hit
      GI:195970697
      EU670723
    • Hit length
      84,773 bp
    • E Value
      0E0
    • BLAST Score
      1,107.3 bits
    • Similarity
      77.88%
    • Coverage
      3.29%
    • Alignment (schematic)

      SEQ ID NO 1
      3.29% cov
      EU670723
      2.29% cov
    • Alignment Length
      2,016 bp
  • Micromonospora sp. L5

    Micromonospora sp. L5

    • Public DB hit
      GI:315407437
      CP002399
    • Hit length
      6,962,533 bp
    • E Value
      0E0
    • BLAST Score
      719.5 bits
    • Similarity
      74.84%
    • Coverage
      3.09%
    • Alignment (schematic)

      SEQ ID NO 1
      3.09% cov
      CP002399
      0.03% cov
    • Alignment Length
      1,896 bp
  • Micromonospora aurantiaca ATCC 27029

    Micromonospora aurantiaca ATCC 27029

    • Public DB hit
      GI:302567367
      CP002162
    • Hit length
      7,025,559 bp
    • E Value
      0E0
    • BLAST Score
      702.8 bits
    • Similarity
      74.68%
    • Coverage
      3.09%
    • Alignment (schematic)

      SEQ ID NO 1
      3.09% cov
      CP002162
      0.03% cov
    • Alignment Length
      1,896 bp
  • Kitasatospora setae KM-6054

    Kitasatospora setae KM-6054

    • Public DB hit
      GI:311893446
      AP010968
    • Hit length
      8,783,278 bp
    • E Value
      2.4E-151
    • BLAST Score
      551.4 bits
    • Similarity
      76.71%
    • Coverage
      1.88%
    • Alignment (schematic)

      SEQ ID NO 1
      1.88% cov
      AP010968
      0.01% cov
    • Alignment Length
      1,155 bp
  • Cystobacter sp. SBCb004

    Cystobacter sp. SBCb004

    • Public DB hit
      GI:296280767
      GU002154
    • Hit length
      51,513 bp
    • E Value
      1.58E-83
    • BLAST Score
      326.1 bits
    • Similarity
      74.89%
    • Coverage
      1.45%
    • Alignment (schematic)

      SEQ ID NO 1
      1.45% cov
      GU002154
      1.65% cov
    • Alignment Length
      896 bp
  • Streptosporangium roseum DSM 43021

    Streptosporangium roseum DSM 43021

    • Public DB hit
      GI:270504784
      CP001814
    • Hit length
      10,341,314 bp
    • E Value
      5.82E-68
    • BLAST Score
      274.4 bits
    • Similarity
      74.03%
    • Coverage
      1.41%
    • Alignment (schematic)

      SEQ ID NO 1
      1.41% cov
      CP001814
      0.01% cov
    • Alignment Length
      874 bp
  • Myxococcus fulvus HW-1

    Myxococcus fulvus HW-1

    • Public DB hit
      GI:337255776
      CP002830
    • Hit length
      9,003,593 bp
    • E Value
      9.81E-61
    • BLAST Score
      250.4 bits
    • Similarity
      74.85%
    • Coverage
      1.1%
    • Alignment (schematic)

      SEQ ID NO 1
      1.1% cov
      CP002830
      0.01% cov
    • Alignment Length
      680 bp
  • Sorangium cellulosum So ce56

    Sorangium cellulosum So ce56

    • Public DB hit
      GI:161158851
      AM746676
    • Hit length
      13,033,779 bp
    • E Value
      2.75E-56
    • BLAST Score
      235.6 bits
    • Similarity
      73.42%
    • Coverage
      1.31%
    • Alignment (schematic)

      SEQ ID NO 1
      1.31% cov
      AM746676
      0.01% cov
    • Alignment Length
      809 bp
  • Opitutus terrae PB90-1

    Opitutus terrae PB90-1

    • Public DB hit
      GI:177839040
      CP001032
    • Hit length
      5,957,605 bp
    • E Value
      3.55E-55
    • BLAST Score
      232 bits
    • Similarity
      74.37%
    • Coverage
      1.09%
    • Alignment (schematic)

      SEQ ID NO 1
      1.09% cov
      CP001032
      0.01% cov
    • Alignment Length
      671 bp
  • Streptomyces griseus subsp. griseus NBRC 13350

    Streptomyces griseus subsp. griseus NBRC 13350

    • Public DB hit
      GI:178462309
      AP009493
    • Hit length
      8,545,929 bp
    • E Value
      5.99E-48
    • BLAST Score
      207.9 bits
    • Similarity
      73.12%
    • Coverage
      1.37%
    • Alignment (schematic)

      SEQ ID NO 1
      1.37% cov
      AP009493
      0.01% cov
    • Alignment Length
      863 bp
  • Myxococcus xanthus DK 1622

    Myxococcus xanthus DK 1622

    • Public DB hit
      GI:108460647
      CP000113
    • Hit length
      9,139,763 bp
    • E Value
      1E-45
    • BLAST Score
      200.6 bits
    • Similarity
      74.28%
    • Coverage
      0.96%
    • Alignment (schematic)

      SEQ ID NO 1
      0.96% cov
      CP000113
      0.01% cov
    • Alignment Length
      591 bp
  • Frankia sp. CcI3

    Frankia sp. CcI3

    • Public DB hit
      GI:86565586
      CP000249
    • Hit length
      5,433,628 bp
    • E Value
      1.3E-44
    • BLAST Score
      196.9 bits
    • Similarity
      79.79%
    • Coverage
      0.47%
    • Alignment (schematic)

      SEQ ID NO 1
      0.47% cov
      CP000249
      0.01% cov
    • Alignment Length
      282 bp
  • Streptomyces pristinaespiralis

    Streptomyces pristinaespiralis

    • Public DB hit
      GI:302607722
      FR681999
      1 of 4 hits reported for Streptomyces pristinaespiralis.
    • Hit length
      66,339 bp
    • E Value
      7.8E-42
    • BLAST Score
      187.6 bits
    • Similarity
      80.07%
    • Coverage
      0.46%
    • Alignment (schematic)

      SEQ ID NO 1
      0.46% cov
      FR681999
      0.41% cov
    • Alignment Length
      286 bp
  • Streptomyces virginiae

    Streptomyces virginiae

    • Public DB hit
      GI:297233228
      AB283030
    • Hit length
      57,999 bp
    • E Value
      4.7E-39
    • BLAST Score
      178.4 bits
    • Similarity
      75.2%
    • Coverage
      0.78%
    • Alignment (schematic)

      SEQ ID NO 1
      0.78% cov
      AB283030
      0.79% cov
    • Alignment Length
      488 bp
  • Streptomyces venezuelae ATCC 10712

    Streptomyces venezuelae ATCC 10712

    • Public DB hit
      GI:328880049
      FR845719
    • Hit length
      8,226,158 bp
    • E Value
      2.18E-37
    • BLAST Score
      172.9 bits
    • Similarity
      72%
    • Coverage
      1.47%
    • Alignment (schematic)

      SEQ ID NO 1
      1.47% cov
      FR845719
      0.01% cov
    • Alignment Length
      918 bp
  • Streptomyces ambofaciens ATCC 23877

    Streptomyces ambofaciens ATCC 23877

    • Public DB hit
      GI:126347282
      AM238663
    • Hit length
      1,544,032 bp
    • E Value
      1.02E-35
    • BLAST Score
      167.3 bits
    • Similarity
      77.35%
    • Coverage
      0.51%
    • Alignment (schematic)

      SEQ ID NO 1
      0.51% cov
      AM238663
      0.02% cov
    • Alignment Length
      309 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
2
Length
18,660
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Streptomyces verticillus

Determined organism:
  • Streptomyces verticillus

    Streptomyces verticillus

    • Public DB hit
      GI:9937210
      AF210249
    • Hit length
      77,457 bp
    • E Value
      0E0
    • BLAST Score
      34,459.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AF210249
      24.09% cov
    • Alignment Length
      18,660 bp
    • CIGAR string
      18660M mismatches: 0 - insertions: 0 - deletions: 0
  • Streptomyces hygroscopicus subsp. jinggangensis

    Streptomyces hygroscopicus subsp. jinggangensis

    • Public DB hit
      GI:76262884
      DQ164098
    • Hit length
      45,164 bp
    • E Value
      0E0
    • BLAST Score
      1,663.1 bits
    • Similarity
      87.82%
    • Coverage
      7.64%
    • Alignment (schematic)

      SEQ ID NO 2
      7.64% cov
      DQ164098
      3.16% cov
    • Alignment Length
      1,437 bp
    • CIGAR string
      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 mismatches: 151 - insertions: 12 - deletions: 12
  • Streptomyces fradiae

    Streptomyces fradiae

    • Public DB hit
      GI:6002935
      AF164961
    • Hit length
      11,790 bp
    • E Value
      0E0
    • BLAST Score
      1,618.8 bits
    • Similarity
      87.15%
    • Coverage
      7.68%
    • Alignment (schematic)

      SEQ ID NO 2
      7.68% cov
      AF164961
      12.22% cov
    • Alignment Length
      1,455 bp
    • CIGAR string
      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 mismatches: 151 - insertions: 22 - deletions: 14
  • Kitasatospora setae KM-6054

    Kitasatospora setae KM-6054

    • Public DB hit
      GI:311893446
      AP010968
    • Hit length
      8,783,278 bp
    • E Value
      0E0
    • BLAST Score
      1,363.9 bits
    • Similarity
      84.05%
    • Coverage
      7.69%
    • Alignment (schematic)

      SEQ ID NO 2
      7.69% cov
      AP010968
      0.02% cov
    • Alignment Length
      1,461 bp
  • Streptomyces scabiei 87.22

    Streptomyces scabiei 87.22

    • Public DB hit
      GI:260644157
      FN554889
    • Hit length
      10,148,695 bp
    • E Value
      0E0
    • BLAST Score
      1,146 bits
    • Similarity
      82.03%
    • Coverage
      7.37%
    • Alignment (schematic)

      SEQ ID NO 2
      7.37% cov
      FN554889
      0.01% cov
    • Alignment Length
      1,408 bp
  • Streptomyces niger

    Streptomyces niger

    • Public DB hit
      GI:238770483
      AB432571
    • Hit length
      740 bp
    • E Value
      4.11E-45
    • BLAST Score
      196.9 bits
    • Similarity
      85.49%
    • Coverage
      1.03%
    • Alignment (schematic)

      SEQ ID NO 2
      1.03% cov
      AB432571
      25.54% cov
    • Alignment Length
      193 bp
  • Streptomyces aurantiacus

    Streptomyces aurantiacus

    • Public DB hit
      GI:238770651
      AB432655
    • Hit length
      742 bp
    • E Value
      1.92E-38
    • BLAST Score
      174.7 bits
    • Similarity
      81.42%
    • Coverage
      1.19%
    • Alignment (schematic)

      SEQ ID NO 2
      1.19% cov
      AB432655
      29.51% cov
    • Alignment Length
      226 bp
  • Actinoplanes friuliensis

    Actinoplanes friuliensis

    • Public DB hit
      GI:126635107
      AJ488769
    • Hit length
      70,820 bp
    • E Value
      1.92E-38
    • BLAST Score
      174.7 bits
    • Similarity
      80.16%
    • Coverage
      1.33%
    • Alignment (schematic)

      SEQ ID NO 2
      1.33% cov
      AJ488769
      0.35% cov
    • Alignment Length
      257 bp
  • Streptomyces hygroscopicus

    Streptomyces hygroscopicus

    • Public DB hit
      GI:52222852
      AY735112
    • Hit length
      48,200 bp
    • E Value
      6.92E-38
    • BLAST Score
      172.9 bits
    • Similarity
      78.47%
    • Coverage
      1.51%
    • Alignment (schematic)

      SEQ ID NO 2
      1.51% cov
      AY735112
      0.58% cov
    • Alignment Length
      288 bp
  • Streptomyces griseus subsp. griseus NBRC 13350

    Streptomyces griseus subsp. griseus NBRC 13350

    • Public DB hit
      GI:178462309
      AP009493
    • Hit length
      8,545,929 bp
    • E Value
      3.22E-36
    • BLAST Score
      167.3 bits
    • Similarity
      75.91%
    • Coverage
      1.98%
    • Alignment (schematic)

      SEQ ID NO 2
      1.98% cov
      AP009493
      0% cov
    • Alignment Length
      386 bp
  • Ralstonia solanacearum Po82

    Ralstonia solanacearum Po82

    • Public DB hit
      GI:334197458
      CP002820
    • Hit length
      1,949,172 bp
    • E Value
      1.16E-35
    • BLAST Score
      165.5 bits
    • Similarity
      78.29%
    • Coverage
      1.47%
    • Alignment (schematic)

      SEQ ID NO 2
      1.47% cov
      CP002820
      0.01% cov
    • Alignment Length
      281 bp
  • Streptomyces coelicolor A3(2)

    Streptomyces coelicolor A3(2)

    • Public DB hit
      GI:24426505
      AL939115
    • Hit length
      276,800 bp
    • E Value
      1.16E-35
    • BLAST Score
      165.5 bits
    • Similarity
      76.69%
    • Coverage
      1.87%
    • Alignment (schematic)

      SEQ ID NO 2
      1.87% cov
      AL939115
      0.12% cov
    • Alignment Length
      369 bp
  • Streptomyces anulatus

    Streptomyces anulatus

    • Public DB hit
      GI:295683927
      HM038106
    • Hit length
      66,086 bp
    • E Value
      1.94E-33
    • BLAST Score
      158.1 bits
    • Similarity
      80%
    • Coverage
      1.22%
    • Alignment (schematic)

      SEQ ID NO 2
      1.22% cov
      HM038106
      0.35% cov
    • Alignment Length
      240 bp
  • Rhodococcus opacus B4

    Rhodococcus opacus B4

    • Public DB hit
      GI:226237899
      AP011115
    • Hit length
      7,913,450 bp
    • E Value
      1.17E-30
    • BLAST Score
      148.9 bits
    • Similarity
      78.54%
    • Coverage
      1.28%
    • Alignment (schematic)

      SEQ ID NO 2
      1.28% cov
      AP011115
      0% cov
    • Alignment Length
      247 bp
  • Burkholderia glumae BGR1

    Burkholderia glumae BGR1

    • Public DB hit
      GI:237878166
      CP001504
    • Hit length
      2,827,355 bp
    • E Value
      1.51E-29
    • BLAST Score
      145.2 bits
    • Similarity
      73.75%
    • Coverage
      2.7%
    • Alignment (schematic)

      SEQ ID NO 2
      2.7% cov
      CP001504
      0.02% cov
    • Alignment Length
      541 bp
  • Saccharopolyspora erythraea NRRL 2338

    Saccharopolyspora erythraea NRRL 2338

    • Public DB hit
      GI:133909243
      AM420293
    • Hit length
      8,212,805 bp
    • E Value
      1.51E-29
    • BLAST Score
      145.2 bits
    • Similarity
      76.97%
    • Coverage
      1.54%
    • Alignment (schematic)

      SEQ ID NO 2
      1.54% cov
      AM420293
      0% cov
    • Alignment Length
      304 bp
  • Streptomyces bingchenggensis BCW-1

    Streptomyces bingchenggensis BCW-1

    • Public DB hit
      GI:297153409
      CP002047
    • Hit length
      11,936,683 bp
    • E Value
      9.08E-27
    • BLAST Score
      135.9 bits
    • Similarity
      73.22%
    • Coverage
      2.64%
    • Alignment (schematic)

      SEQ ID NO 2
      2.64% cov
      CP002047
      0% cov
    • Alignment Length
      519 bp
  • Streptomyces noursei

    Streptomyces noursei

    • Public DB hit
      GI:238769682
      AB432369
    • Hit length
      715 bp
    • E Value
      1.52E-24
    • BLAST Score
      128.5 bits
    • Similarity
      76.69%
    • Coverage
      1.37%
    • Alignment (schematic)

      SEQ ID NO 2
      1.37% cov
      AB432369
      35.66% cov
    • Alignment Length
      266 bp
  • Pseudomonas sp. SHC52

    Pseudomonas sp. SHC52

    • Public DB hit
      GI:331704081
      HQ888764
    • Hit length
      40,038 bp
    • E Value
      1.97E-23
    • BLAST Score
      124.8 bits
    • Similarity
      73.65%
    • Coverage
      2.1%
    • Alignment (schematic)

      SEQ ID NO 2
      2.1% cov
      HQ888764
      0.96% cov
    • Alignment Length
      406 bp
  • Ralstonia eutropha H16

    Ralstonia eutropha H16

    • Public DB hit
      GI:113528459
      AM260480
    • Hit length
      2,912,490 bp
    • E Value
      7.07E-23
    • BLAST Score
      123 bits
    • Similarity
      77.02%
    • Coverage
      1.24%
    • Alignment (schematic)

      SEQ ID NO 2
      1.24% cov
      AM260480
      0.01% cov
    • Alignment Length
      235 bp
  • Frankia sp. EAN1pec

    Frankia sp. EAN1pec

    • Public DB hit
      GI:158107272
      CP000820
    • Hit length
      8,982,042 bp
    • E Value
      9.14E-22
    • BLAST Score
      119.3 bits
    • Similarity
      78.14%
    • Coverage
      1.1%
    • Alignment (schematic)

      SEQ ID NO 2
      1.1% cov
      CP000820
      0% cov
    • Alignment Length
      215 bp
  • Streptomyces viridochromogenes subsp. komabensis

    Streptomyces viridochromogenes subsp. komabensis

    • Public DB hit
      GI:238769984
      AB432520
    • Hit length
      709 bp
    • E Value
      1.18E-20
    • BLAST Score
      115.6 bits
    • Similarity
      78.17%
    • Coverage
      1.03%
    • Alignment (schematic)

      SEQ ID NO 2
      1.03% cov
      AB432520
      26.66% cov
    • Alignment Length
      197 bp
  • Nocardia farcinica IFM 10152

    Nocardia farcinica IFM 10152

    • Public DB hit
      GI:54013472
      AP006618
    • Hit length
      6,021,225 bp
    • E Value
      5.5E-19
    • BLAST Score
      110.1 bits
    • Similarity
      75.08%
    • Coverage
      1.53%
    • Alignment (schematic)

      SEQ ID NO 2
      1.53% cov
      AP006618
      0% cov
    • Alignment Length
      301 bp
  • Pseudomonas aeruginosa PA7

    Pseudomonas aeruginosa PA7

    • Public DB hit
      GI:150958624
      CP000744
    • Hit length
      6,588,339 bp
    • E Value
      1.98E-18
    • BLAST Score
      108.2 bits
    • Similarity
      76.05%
    • Coverage
      1.25%
    • Alignment (schematic)

      SEQ ID NO 2
      1.25% cov
      CP000744
      0% cov
    • Alignment Length
      238 bp
  • Mycobacterium avium 104

    Mycobacterium avium 104

    • Public DB hit
      GI:118163506
      CP000479
    • Hit length
      5,475,491 bp
    • E Value
      1.98E-18
    • BLAST Score
      108.2 bits
    • Similarity
      79.76%
    • Coverage
      0.86%
    • Alignment (schematic)

      SEQ ID NO 2
      0.86% cov
      CP000479
      0% cov
    • Alignment Length
      168 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,761
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Streptomyces verticillus

Occurrence
Tools
PatSeq Finder
SEQ ID NO
4
Length
7
Type
peptide
Locations
Detailed Description, Summary

Declared organism:
Artificial

Determined organism:
Occurrence
19 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
18
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Streptomyces verticillus

    Streptomyces verticillus

    • Public DB hit
      GI:9937210
      AF210249
    • Hit length
      77,457 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AF210249
      0.02% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Acidovorax avenae subsp. avenae ATCC 19860

    Acidovorax avenae subsp. avenae ATCC 19860

    • Public DB hit
      GI:323371659
      CP002521
    • Hit length
      5,482,170 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 5
      94.44% cov
      CP002521
      0% cov
    • Alignment Length
      17 bp
    • CIGAR string
      1H17M mismatches: 0 - insertions: 0 - deletions: 0
  • Sinorhizobium fredii NGR234

    Sinorhizobium fredii NGR234

    • Public DB hit
      GI:227337257
      CP000874
    • Hit length
      2,430,033 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 5
      94.44% cov
      CP000874
      0% cov
    • Alignment Length
      17 bp
    • CIGAR string
      1H17M mismatches: 0 - insertions: 0 - deletions: 0
  • Ostreococcus lucimarinus CCE9901

    Ostreococcus lucimarinus CCE9901

    • Public DB hit
      GI:144580792
      CP000592
    • Hit length
      538,963 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 5
      94.44% cov
      CP000592
      0% cov
    • Alignment Length
      17 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
6
Length
18
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Streptomyces verticillus

    Streptomyces verticillus

    • Public DB hit
      GI:9937210
      AF210249
      1 of 2 hits reported for Streptomyces verticillus.
    • Hit length
      77,457 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AF210249
      0.02% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Sphingobium japonicum UT26S

    Sphingobium japonicum UT26S

    • Public DB hit
      GI:292676846
      AP010804
    • Hit length
      681,892 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 6
      94.44% cov
      AP010804
      0% cov
    • Alignment Length
      17 bp
    • CIGAR string
      1H17M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:29893079
      AL732640
    • Hit length
      183,414 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 6
      94.44% cov
      AL732640
      0.01% cov
    • Alignment Length
      17 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
7
Length
18
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Verminephrobacter eiseniae EF01-2

    Verminephrobacter eiseniae EF01-2

    • Public DB hit
      GI:121551644
      CP000542
    • Hit length
      5,566,749 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000542
      0% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Streptomyces verticillus

    Streptomyces verticillus

    • Public DB hit
      GI:9937210
      AF210249
    • Hit length
      77,457 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AF210249
      0.02% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194223717
      XM_001499597
      1 of 2 hits reported for Equus caballus.
    • Hit length
      1,905 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      XM_001499597
      0.89% cov
    • Alignment Length
      17 bp
    • CIGAR string
      1H17M mismatches: 0 - insertions: 0 - deletions: 0
  • Chlamydomonas reinhardtii

    Chlamydomonas reinhardtii

    • Public DB hit
      GI:159475055
      XM_001695587
      1 of 2 hits reported for Chlamydomonas reinhardtii.
    • Hit length
      3,017 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      XM_001695587
      0.56% cov
    • Alignment Length
      17 bp
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229359445
      AM181176
    • Hit length
      6,722,539 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      AM181176
      0% cov
    • Alignment Length
      17 bp
  • Stenotrophomonas maltophilia K279a

    Stenotrophomonas maltophilia K279a

    • Public DB hit
      GI:190010013
      AM743169
    • Hit length
      4,851,126 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      AM743169
      0% cov
    • Alignment Length
      17 bp
  • Deinococcus radiodurans R1

    Deinococcus radiodurans R1

    • Public DB hit
      GI:11612677
      AE001825
    • Hit length
      412,348 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      AE001825
      0% cov
    • Alignment Length
      17 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
8
Length
18
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Solanum lycopersicum

    Solanum lycopersicum

    • Public DB hit
      GI:312986084
      HQ317908
      1 of 3 hits reported for Solanum lycopersicum.
    • Hit length
      7,544 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      HQ317908
      0.24% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Streptomyces verticillus

    Streptomyces verticillus

    • Public DB hit
      GI:9937210
      AF210249
    • Hit length
      77,457 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF210249
      0.02% cov
    • Alignment Length
      18 bp
  • Mesorhizobium opportunistum WSM2075

    Mesorhizobium opportunistum WSM2075

    • Public DB hit
      GI:336024847
      CP002279
    • Hit length
      6,884,444 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 8
      94.44% cov
      CP002279
      0% cov
    • Alignment Length
      17 bp
  • Alicycliphilus denitrificans K601

    Alicycliphilus denitrificans K601

    • Public DB hit
      GI:329308025
      CP002657
    • Hit length
      4,995,263 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 8
      94.44% cov
      CP002657
      0% cov
    • Alignment Length
      17 bp
  • Ralstonia pickettii 12D

    Ralstonia pickettii 12D

    • Public DB hit
      GI:240863652
      CP001644
    • Hit length
      3,647,724 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 8
      94.44% cov
      CP001644
      0% cov
    • Alignment Length
      17 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
9
Length
18
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Streptomyces verticillus

    Streptomyces verticillus

    • Public DB hit
      GI:9937210
      AF210249
    • Hit length
      77,457 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AF210249
      0.02% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301784374
      XM_002927556
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      2,775 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 9
      94.44% cov
      XM_002927556
      0.61% cov
    • Alignment Length
      17 bp
    • CIGAR string
      1H17M mismatches: 0 - insertions: 0 - deletions: 0
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297476384
      XM_002688603
      1 of 7 hits reported for Bos taurus.
    • Hit length
      3,053 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 9
      94.44% cov
      XM_002688603
      0.56% cov
    • Alignment Length
      17 bp
    • CIGAR string
      1H17M mismatches: 0 - insertions: 0 - deletions: 0
  • Culex quinquefasciatus

    Culex quinquefasciatus

    • Public DB hit
      GI:170051532
      XM_001861771
      1 of 2 hits reported for Culex quinquefasciatus.
    • Hit length
      903 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 9
      94.44% cov
      XM_001861771
      1.88% cov
    • Alignment Length
      17 bp
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:118097047
      XM_425165
      1 of 2 hits reported for Gallus gallus.
    • Hit length
      3,936 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 9
      94.44% cov
      XM_425165
      0.43% cov
    • Alignment Length
      17 bp
  • Brachybacterium faecium DSM 4810

    Brachybacterium faecium DSM 4810

    • Public DB hit
      GI:256558041
      CP001643
    • Hit length
      3,614,992 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 9
      94.44% cov
      CP001643
      0% cov
    • Alignment Length
      17 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
10
Length
18
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Streptomyces verticillus

    Streptomyces verticillus

    • Public DB hit
      GI:9937210
      AF210249
    • Hit length
      77,457 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AF210249
      0.02% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
Tools
PatSeq Finder

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