Nucleic Acid Modifying Enzymes

Data obtained from: USPTO Fulltext NCBI GenBank EMBL-EBI Pat DDBJ Pat
17 sequences found in this patent (in total)

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Download sequences in fasta format: 11 peptides 6 nucleotides

Displaying 11 - 17 of 17 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
11
Length
1,965
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Thermus aquaticus

    Thermus aquaticus

    • Public DB hit
      GI:507890
      D32013
      1 of 3 hits reported for Thermus aquaticus.
    • Hit length
      3,026 bp
    • E Value
      0E0
    • BLAST Score
      3,003.8 bits
    • Similarity
      100%
    • Coverage
      82.75%
    • Alignment (schematic)

      SEQ ID NO 11
      82.75% cov
      D32013
      53.73% cov
    • Alignment Length
      1,626 bp
    • CIGAR string
      291H1626M48H mismatches: 0 - insertions: 0 - deletions: 0
  • Thermus sp. YSP2A.A1

    Thermus sp. YSP2A.A1

    • Public DB hit
      GI:210077500
      FJ358542
    • Hit length
      2,499 bp
    • E Value
      0E0
    • BLAST Score
      2,915.1 bits
    • Similarity
      99.02%
    • Coverage
      82.75%
    • Alignment (schematic)

      SEQ ID NO 11
      82.75% cov
      FJ358542
      65.07% cov
    • Alignment Length
      1,626 bp
  • Thermus thermophilus SG0.5JP17-16

    Thermus thermophilus SG0.5JP17-16

    • Public DB hit
      GI:333965676
      CP002777
    • Hit length
      1,863,201 bp
    • E Value
      0E0
    • BLAST Score
      1,785 bits
    • Similarity
      86.74%
    • Coverage
      82.29%
    • Alignment (schematic)

      SEQ ID NO 11
      82.29% cov
      CP002777
      0.09% cov
    • Alignment Length
      1,637 bp
  • Thermus thermophilus HB8

    Thermus thermophilus HB8

    • Public DB hit
      GI:55771382
      AP008226
      1 of 2 hits reported for Thermus thermophilus HB8.
    • Hit length
      1,849,742 bp
    • E Value
      0E0
    • BLAST Score
      1,751.7 bits
    • Similarity
      86.39%
    • Coverage
      82.29%
    • Alignment (schematic)

      SEQ ID NO 11
      82.29% cov
      AP008226
      0.09% cov
    • Alignment Length
      1,638 bp
  • Thermus thermophilus

    Thermus thermophilus

    • Public DB hit
      GI:199581286
      EU708319
      1 of 2 hits reported for Thermus thermophilus.
    • Hit length
      2,505 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      86.34%
    • Coverage
      82.29%
    • Alignment (schematic)

      SEQ ID NO 11
      82.29% cov
      EU708319
      64.55% cov
    • Alignment Length
      1,640 bp
  • Expression vector pLED-HB

    Expression vector pLED-HB

    • Public DB hit
      GI:6009634
      AB025788
    • Hit length
      5,260 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      86.32%
    • Coverage
      82.29%
    • Alignment (schematic)

      SEQ ID NO 11
      82.29% cov
      AB025788
      30.74% cov
    • Alignment Length
      1,638 bp
  • Thermus caldophilus

    Thermus caldophilus

    • Public DB hit
      GI:1470114
      U62584
    • Hit length
      2,760 bp
    • E Value
      0E0
    • BLAST Score
      1,729.6 bits
    • Similarity
      86.14%
    • Coverage
      82.29%
    • Alignment (schematic)

      SEQ ID NO 11
      82.29% cov
      U62584
      58.59% cov
    • Alignment Length
      1,638 bp
  • Thermus thermophilus HB27

    Thermus thermophilus HB27

    • Public DB hit
      GI:46197919
      AE017221
    • Hit length
      1,894,877 bp
    • E Value
      0E0
    • BLAST Score
      1,718.5 bits
    • Similarity
      86.05%
    • Coverage
      82.29%
    • Alignment (schematic)

      SEQ ID NO 11
      82.29% cov
      AE017221
      0.09% cov
    • Alignment Length
      1,641 bp
  • Thermus sp. Fiji3.A1

    Thermus sp. Fiji3.A1

    • Public DB hit
      GI:210077510
      FJ358547
    • Hit length
      2,496 bp
    • E Value
      0E0
    • BLAST Score
      1,618.8 bits
    • Similarity
      84.93%
    • Coverage
      82.29%
    • Alignment (schematic)

      SEQ ID NO 11
      82.29% cov
      FJ358547
      64.78% cov
    • Alignment Length
      1,639 bp
  • Thermus scotoductus SA-01

    Thermus scotoductus SA-01

    • Public DB hit
      GI:320149275
      CP001962
    • Hit length
      2,346,803 bp
    • E Value
      0E0
    • BLAST Score
      1,500.6 bits
    • Similarity
      83.69%
    • Coverage
      82.09%
    • Alignment (schematic)

      SEQ ID NO 11
      82.09% cov
      CP001962
      0.07% cov
    • Alignment Length
      1,637 bp
  • Thermus sp. NMX2.A1

    Thermus sp. NMX2.A1

    • Public DB hit
      GI:210077502
      FJ358543
    • Hit length
      2,493 bp
    • E Value
      0E0
    • BLAST Score
      1,500.6 bits
    • Similarity
      83.7%
    • Coverage
      82.09%
    • Alignment (schematic)

      SEQ ID NO 11
      82.09% cov
      FJ358543
      64.7% cov
    • Alignment Length
      1,638 bp
  • Thermus sp. ATCC 27737

    Thermus sp. ATCC 27737

    • Public DB hit
      GI:210077498
      FJ358541
    • Hit length
      2,493 bp
    • E Value
      0E0
    • BLAST Score
      1,489.5 bits
    • Similarity
      83.57%
    • Coverage
      82.09%
    • Alignment (schematic)

      SEQ ID NO 11
      82.09% cov
      FJ358541
      64.7% cov
    • Alignment Length
      1,637 bp
  • Thermus sp. Tp10.A2

    Thermus sp. Tp10.A2

    • Public DB hit
      GI:210077508
      FJ358546
    • Hit length
      2,502 bp
    • E Value
      0E0
    • BLAST Score
      1,256.8 bits
    • Similarity
      81.28%
    • Coverage
      81.93%
    • Alignment (schematic)

      SEQ ID NO 11
      81.93% cov
      FJ358546
      64.11% cov
    • Alignment Length
      1,651 bp
  • Thermus sp. OH.A2

    Thermus sp. OH.A2

    • Public DB hit
      GI:210077504
      FJ358544
    • Hit length
      2,502 bp
    • E Value
      0E0
    • BLAST Score
      1,251.3 bits
    • Similarity
      81.38%
    • Coverage
      81.02%
    • Alignment (schematic)

      SEQ ID NO 11
      81.02% cov
      FJ358544
      63.39% cov
    • Alignment Length
      1,633 bp
  • Thermus filiformis

    Thermus filiformis

    • Public DB hit
      GI:2739138
      AF030320
      1 of 2 hits reported for Thermus filiformis.
    • Hit length
      2,760 bp
    • E Value
      0E0
    • BLAST Score
      1,251.3 bits
    • Similarity
      81.36%
    • Coverage
      81.02%
    • Alignment (schematic)

      SEQ ID NO 11
      81.02% cov
      AF030320
      57.46% cov
    • Alignment Length
      1,631 bp
  • Thermus sp. Wai28.A1

    Thermus sp. Wai28.A1

    • Public DB hit
      GI:210077512
      FJ358548
    • Hit length
      2,502 bp
    • E Value
      0E0
    • BLAST Score
      1,229.1 bits
    • Similarity
      80.99%
    • Coverage
      81.93%
    • Alignment (schematic)

      SEQ ID NO 11
      81.93% cov
      FJ358548
      64.11% cov
    • Alignment Length
      1,652 bp
  • Thermus sp. Tok23.A1

    Thermus sp. Tok23.A1

    • Public DB hit
      GI:210077506
      FJ358545
    • Hit length
      2,502 bp
    • E Value
      0E0
    • BLAST Score
      1,229.1 bits
    • Similarity
      80.99%
    • Coverage
      81.93%
    • Alignment (schematic)

      SEQ ID NO 11
      81.93% cov
      FJ358545
      64.11% cov
    • Alignment Length
      1,652 bp
Occurrence
42 times in PatSeqDB
Tools
SEQ ID NO
12
Length
654
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Thermus aquaticus

    Thermus aquaticus

    • Public DB hit
      GI:6730045
      5KTQ_A
      1 of 10 hits reported for Thermus aquaticus.
    • Hit length
      543 aa
    • E Value
      0E0
    • BLAST Score
      1,083.9 bits
    • Similarity
      100%
    • Coverage
      83.03%
    • Alignment (schematic)

      SEQ ID NO 12
      83.03% cov
      5KTQ_A
      100% cov
    • Alignment Length
      543 aa
    • CIGAR string
      96H543M15H mismatches: 0 - insertions: 0 - deletions: 0
  • Methylocystis sp. ATCC 49242

    Methylocystis sp. ATCC 49242

    • Public DB hit
      GI:323140021
      ZP_08075033
    • Hit length
      833 aa
    • E Value
      0E0
    • BLAST Score
      1,082.8 bits
    • Similarity
      99.63%
    • Coverage
      83.64%
    • Alignment (schematic)

      SEQ ID NO 12
      83.64% cov
      ZP_08075033
      65.67% cov
    • Alignment Length
      547 aa
    • CIGAR string
      92HM3N543M15H mismatches: 3 - insertions: 0 - deletions: 0
  • eukaryotic synthetic construct

    eukaryotic synthetic construct

    • Public DB hit
      GI:319802967
      BAJ61823
    • Hit length
      829 aa
    • E Value
      0E0
    • BLAST Score
      1,082.4 bits
    • Similarity
      99.63%
    • Coverage
      83.64%
    • Alignment (schematic)

      SEQ ID NO 12
      83.64% cov
      BAJ61823
      65.98% cov
    • Alignment Length
      547 aa
    • CIGAR string
      92HM3N543M15H mismatches: 3 - insertions: 0 - deletions: 0
  • Thermus sp. YSP2A.A1

    Thermus sp. YSP2A.A1

    • Public DB hit
      GI:210077501
      ACJ07015
    • Hit length
      832 aa
    • E Value
      0E0
    • BLAST Score
      1,070.8 bits
    • Similarity
      98.72%
    • Coverage
      83.64%
    • Alignment (schematic)

      SEQ ID NO 12
      83.64% cov
      ACJ07015
      65.75% cov
    • Alignment Length
      547 aa
  • Thermus thermophilus HB27

    Thermus thermophilus HB27

    • Public DB hit
      GI:46198998
      YP_004665
    • Hit length
      834 aa
    • E Value
      0E0
    • BLAST Score
      962.6 bits
    • Similarity
      92.49%
    • Coverage
      83.49%
    • Alignment (schematic)

      SEQ ID NO 12
      83.49% cov
      YP_004665
      65.47% cov
    • Alignment Length
      546 aa
  • Thermus thermophilus SG0.5JP17-16

    Thermus thermophilus SG0.5JP17-16

    • Public DB hit
      GI:333966710
      AEG33475
    • Hit length
      831 aa
    • E Value
      0E0
    • BLAST Score
      961.8 bits
    • Similarity
      92.49%
    • Coverage
      83.49%
    • Alignment (schematic)

      SEQ ID NO 12
      83.49% cov
      AEG33475
      65.7% cov
    • Alignment Length
      546 aa
  • Thermus thermophilus HB8

    Thermus thermophilus HB8

    • Public DB hit
      GI:55981023
      YP_144320
      1 of 2 hits reported for Thermus thermophilus HB8.
    • Hit length
      834 aa
    • E Value
      0E0
    • BLAST Score
      961.4 bits
    • Similarity
      92.49%
    • Coverage
      83.49%
    • Alignment (schematic)

      SEQ ID NO 12
      83.49% cov
      YP_144320
      65.47% cov
    • Alignment Length
      546 aa
  • Thermus thermophilus

    Thermus thermophilus

    • Public DB hit
      GI:199581287
      ACH89345
      1 of 3 hits reported for Thermus thermophilus.
    • Hit length
      834 aa
    • E Value
      0E0
    • BLAST Score
      959.9 bits
    • Similarity
      92.31%
    • Coverage
      83.49%
    • Alignment (schematic)

      SEQ ID NO 12
      83.49% cov
      ACH89345
      65.47% cov
    • Alignment Length
      546 aa
  • Thermus caldophilus

    Thermus caldophilus

    • Public DB hit
      GI:2506365
      P80194
    • Hit length
      834 aa
    • E Value
      0E0
    • BLAST Score
      955.3 bits
    • Similarity
      92.12%
    • Coverage
      83.49%
    • Alignment (schematic)

      SEQ ID NO 12
      83.49% cov
      P80194
      65.47% cov
    • Alignment Length
      546 aa
  • Thermus sp. Fiji3.A1

    Thermus sp. Fiji3.A1

    • Public DB hit
      GI:210077511
      ACJ07020
    • Hit length
      831 aa
    • E Value
      0E0
    • BLAST Score
      948.7 bits
    • Similarity
      93.77%
    • Coverage
      83.49%
    • Alignment (schematic)

      SEQ ID NO 12
      83.49% cov
      ACJ07020
      65.7% cov
    • Alignment Length
      546 aa
Occurrence
44 times in PatSeqDB
Tools
SEQ ID NO
13
Length
6
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335290054
      XP_003127422
    • Hit length
      2,167 aa
    • E Value
      4.86E2
    • BLAST Score
      26.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 13
      100% cov
      XP_003127422
      0.28% cov
    • Alignment Length
      6 aa
    • CIGAR string
      6M mismatches: 0 - insertions: 0 - deletions: 0
  • Corynebacterium ulcerans BR-AD22

    Corynebacterium ulcerans BR-AD22

    • Public DB hit
      GI:337290086
      YP_004629107
    • Hit length
      539 aa
    • E Value
      4.86E2
    • BLAST Score
      26.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 13
      100% cov
      YP_004629107
      1.11% cov
    • Alignment Length
      6 aa
    • CIGAR string
      6M mismatches: 0 - insertions: 0 - deletions: 0
  • Desulfotomaculum kuznetsovii DSM 6115

    Desulfotomaculum kuznetsovii DSM 6115

    • Public DB hit
      GI:333977559
      YP_004515504
    • Hit length
      320 aa
    • E Value
      4.86E2
    • BLAST Score
      26.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 13
      100% cov
      YP_004515504
      1.88% cov
    • Alignment Length
      6 aa
    • CIGAR string
      6M mismatches: 0 - insertions: 0 - deletions: 0
  • Methylomicrobium album BG8

    Methylomicrobium album BG8

    • Public DB hit
      GI:334109493
      ZP_08483773
    • Hit length
      844 aa
    • E Value
      3E3
    • BLAST Score
      24 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 13
      100% cov
      ZP_08483773
      0.71% cov
    • Alignment Length
      6 aa
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:334343630
      XP_001365767
    • Hit length
      964 aa
    • E Value
      5.86E3
    • BLAST Score
      23.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 13
      100% cov
      XP_001365767
      0.62% cov
    • Alignment Length
      6 aa
  • Desulfotomaculum ruminis DSM 2154

    Desulfotomaculum ruminis DSM 2154

    • Public DB hit
      GI:334341253
      YP_004546233
    • Hit length
      141 aa
    • E Value
      1.33E4
    • BLAST Score
      21.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 13
      100% cov
      YP_004546233
      4.26% cov
    • Alignment Length
      6 aa
  • Methylomonas methanica MC09

    Methylomonas methanica MC09

    • Public DB hit
      GI:333985918
      YP_004515128
    • Hit length
      601 aa
    • E Value
      1.66E4
    • BLAST Score
      21.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 13
      100% cov
      YP_004515128
      1% cov
    • Alignment Length
      6 aa
Occurrence
16496 times in PatSeqDB
Tools
SEQ ID NO
14
Length
8
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:330865602
      AEC47043
      1 of 18 hits reported for synthetic construct.
    • Hit length
      412 aa
    • E Value
      7.91E1
    • BLAST Score
      29.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      AEC47043
      1.94% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:315113237
      3ALA_A
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      748 aa
    • E Value
      7.91E1
    • BLAST Score
      29.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      3ALA_A
      1.07% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • Agrobacterium fabrum str. C58

    Agrobacterium fabrum str. C58

    • Public DB hit
      GI:288965857
      3LLQ_A
    • Hit length
      256 aa
    • E Value
      7.91E1
    • BLAST Score
      29.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      3LLQ_A
      3.12% cov
    • Alignment Length
      8 aa
  • Drosophila melanogaster

    Drosophila melanogaster

    • Public DB hit
      GI:223365839
      3DC4_A
    • Hit length
      344 aa
    • E Value
      7.91E1
    • BLAST Score
      29.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      3DC4_A
      2.33% cov
    • Alignment Length
      8 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:260656293
      3GKZ_A
    • Hit length
      257 aa
    • E Value
      1.24E2
    • BLAST Score
      29.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      3GKZ_A
      3.11% cov
    • Alignment Length
      8 aa
Occurrence
8847 times in PatSeqDB
Tools
SEQ ID NO
15
Length
4
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
104 times in PatSeqDB
Tools
SEQ ID NO
16
Length
6
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
93 times in PatSeqDB
Tools
SEQ ID NO
17
Length
21
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
33 times in PatSeqDB
Tools

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