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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank EMBL-EBI Pat USPTO Fulltext
9 sequences found in this patent (in total)

Displaying 9 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
642
Type
DNA
Locations
Claims, Detailed Description, Summary

Declared organism:
Pseudomonas fluorescens

Determined organism:
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:461401
      L29642
      1 of 6 hits reported for Pseudomonas fluorescens.
    • Hit length
      9,117 bp
    • E Value
      0E0
    • BLAST Score
      1,186.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      L29642
      7.04% cov
    • Alignment Length
      642 bp
    • CIGAR string
      642M mismatches: 0 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis subsp. aureofaciens

    Pseudomonas chlororaphis subsp. aureofaciens

    • Public DB hit
      GI:4680221
      AF115381
    • Hit length
      1,181 bp
    • E Value
      0E0
    • BLAST Score
      1,042.6 bits
    • Similarity
      95.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF115381
      54.36% cov
    • Alignment Length
      642 bp
    • CIGAR string
      92MN27MN13MN68MN2MN65MN41MN5MN5MN17MN38MN11M2N22MN23MN5MN5MN2MN8MN71MN17MN8MN17MN5MN8MN35MN6M mismatches: 26 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis subsp. aurantiaca

    Pseudomonas chlororaphis subsp. aurantiaca

    • Public DB hit
      GI:238915406
      FJ969507
    • Hit length
      701 bp
    • E Value
      0E0
    • BLAST Score
      1,026 bits
    • Similarity
      95.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FJ969507
      91.58% cov
    • Alignment Length
      642 bp
    • CIGAR string
      134MN110MN41MN11MN2MN11MN29MN2MN35MN11M2N22MN8MN2MN8MN2MN5MN5MN2MN6MNMN71MN17MN8MN17MN5MN3MN4MN35MN6M mismatches: 29 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis

    Pseudomonas chlororaphis

    • Public DB hit
      GI:326649652
      JF513195
      1 of 2 hits reported for Pseudomonas chlororaphis.
    • Hit length
      1,183 bp
    • E Value
      0E0
    • BLAST Score
      1,020.5 bits
    • Similarity
      95.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      JF513195
      54.27% cov
    • Alignment Length
      642 bp
  • Pseudomonas protegens Pf-5

    Pseudomonas protegens Pf-5

    • Public DB hit
      GI:68342549
      CP000076
      1 of 2 hits reported for Pseudomonas protegens Pf-5.
    • Hit length
      7,074,893 bp
    • E Value
      0E0
    • BLAST Score
      791.5 bits
    • Similarity
      89.13%
    • Coverage
      98.91%
    • Alignment (schematic)

      SEQ ID NO 1
      98.91% cov
      CP000076
      0.01% cov
    • Alignment Length
      635 bp
  • Pseudomonas tolaasii

    Pseudomonas tolaasii

    • Public DB hit
      GI:188509912
      EU677189
    • Hit length
      771 bp
    • E Value
      0E0
    • BLAST Score
      743.5 bits
    • Similarity
      87.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EU677189
      83.27% cov
    • Alignment Length
      645 bp
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229359445
      AM181176
    • Hit length
      6,722,539 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      87.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AM181176
      0.01% cov
    • Alignment Length
      646 bp
  • Pseudomonas fluorescens Pf0-1

    Pseudomonas fluorescens Pf0-1

    • Public DB hit
      GI:253992019
      CP000094
    • Hit length
      6,438,405 bp
    • E Value
      0E0
    • BLAST Score
      708.4 bits
    • Similarity
      86.88%
    • Coverage
      98.91%
    • Alignment (schematic)

      SEQ ID NO 1
      98.91% cov
      CP000094
      0.01% cov
    • Alignment Length
      640 bp
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:327374765
      CP002585
    • Hit length
      6,843,248 bp
    • E Value
      0E0
    • BLAST Score
      682.5 bits
    • Similarity
      85.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002585
      0.01% cov
    • Alignment Length
      645 bp
  • uncultured Pseudomonas sp.

    uncultured Pseudomonas sp.

    • Public DB hit
      GI:144925973
      EF417476
      1 of 6 hits reported for uncultured Pseudomonas sp..
    • Hit length
      536 bp
    • E Value
      0E0
    • BLAST Score
      675.1 bits
    • Similarity
      89.41%
    • Coverage
      83.49%
    • Alignment (schematic)

      SEQ ID NO 1
      83.49% cov
      EF417476
      100% cov
    • Alignment Length
      538 bp
  • Pseudomonas sp. RB1-2-40

    Pseudomonas sp. RB1-2-40

    • Public DB hit
      GI:93009151
      DQ464397
    • Hit length
      539 bp
    • E Value
      1.12E-176
    • BLAST Score
      629 bits
    • Similarity
      87.99%
    • Coverage
      82.87%
    • Alignment (schematic)

      SEQ ID NO 1
      82.87% cov
      DQ464397
      98.7% cov
    • Alignment Length
      533 bp
  • Pseudomonas sp. PHZ26

    Pseudomonas sp. PHZ26

    • Public DB hit
      GI:23477278
      AF502417
    • Hit length
      406 bp
    • E Value
      8.71E-173
    • BLAST Score
      616.1 bits
    • Similarity
      94.49%
    • Coverage
      62.15%
    • Alignment (schematic)

      SEQ ID NO 1
      62.15% cov
      AF502417
      98.28% cov
    • Alignment Length
      399 bp
  • Pseudomonas sp. PHZ13

    Pseudomonas sp. PHZ13

    • Public DB hit
      GI:23477276
      AF502416
    • Hit length
      406 bp
    • E Value
      4.05E-171
    • BLAST Score
      610.5 bits
    • Similarity
      94.24%
    • Coverage
      62.15%
    • Alignment (schematic)

      SEQ ID NO 1
      62.15% cov
      AF502416
      98.28% cov
    • Alignment Length
      399 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
213
Type
peptide
Locations
Claims, Detailed Description

Declared organism:
Not specified

Determined organism:
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:472403
      AAA98759
      1 of 4 hits reported for Pseudomonas fluorescens.
    • Hit length
      213 aa
    • E Value
      4.56E-119
    • BLAST Score
      431.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAA98759
      100% cov
    • Alignment Length
      213 aa
    • CIGAR string
      213M mismatches: 0 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis subsp. aureofaciens

    Pseudomonas chlororaphis subsp. aureofaciens

    • Public DB hit
      GI:4680222
      AAD27580
    • Hit length
      213 aa
    • E Value
      9.9E-119
    • BLAST Score
      430.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAD27580
      100% cov
    • Alignment Length
      213 aa
    • CIGAR string
      40MN172M mismatches: 1 - insertions: 0 - deletions: 0
  • Pseudomonas protegens Pf-5

    Pseudomonas protegens Pf-5

    • Public DB hit
      GI:70730924
      YP_260665
    • Hit length
      213 aa
    • E Value
      1.85E-118
    • BLAST Score
      429.5 bits
    • Similarity
      100%
    • Coverage
      99.53%
    • Alignment (schematic)

      SEQ ID NO 2
      99.53% cov
      YP_260665
      99.53% cov
    • Alignment Length
      212 aa
    • CIGAR string
      212M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis subsp. aurantiaca

    Pseudomonas chlororaphis subsp. aurantiaca

    • Public DB hit
      GI:238915407
      ACR78200
    • Hit length
      213 aa
    • E Value
      2.26E-118
    • BLAST Score
      429.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACR78200
      100% cov
    • Alignment Length
      213 aa
  • Pseudomonas chlororaphis

    Pseudomonas chlororaphis

    • Public DB hit
      GI:326649653
      AEA02287
    • Hit length
      213 aa
    • E Value
      2.79E-118
    • BLAST Score
      429.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AEA02287
      100% cov
    • Alignment Length
      213 aa
  • Pseudomonas protegens CHA0

    Pseudomonas protegens CHA0

    • Public DB hit
      GI:417023
      P32967
    • Hit length
      213 aa
    • E Value
      1.95E-117
    • BLAST Score
      426.4 bits
    • Similarity
      99.53%
    • Coverage
      99.53%
    • Alignment (schematic)

      SEQ ID NO 2
      99.53% cov
      P32967
      99.53% cov
    • Alignment Length
      212 aa
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:330808750
      YP_004353212
    • Hit length
      213 aa
    • E Value
      8.11E-117
    • BLAST Score
      424.1 bits
    • Similarity
      99.06%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_004353212
      100% cov
    • Alignment Length
      213 aa
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229589685
      YP_002871804
    • Hit length
      213 aa
    • E Value
      3.93E-113
    • BLAST Score
      411.8 bits
    • Similarity
      96.71%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_002871804
      100% cov
    • Alignment Length
      213 aa
  • Pseudomonas fluorescens Pf0-1

    Pseudomonas fluorescens Pf0-1

    • Public DB hit
      GI:77459289
      YP_348796
    • Hit length
      208 aa
    • E Value
      6.99E-112
    • BLAST Score
      407.9 bits
    • Similarity
      98.55%
    • Coverage
      97.18%
    • Alignment (schematic)

      SEQ ID NO 2
      97.18% cov
      YP_348796
      99.52% cov
    • Alignment Length
      207 aa
  • Pseudomonas viridiflava

    Pseudomonas viridiflava

    • Public DB hit
      GI:3023833
      P95582
    • Hit length
      214 aa
    • E Value
      9.13E-111
    • BLAST Score
      404.1 bits
    • Similarity
      95.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      P95582
      100% cov
    • Alignment Length
      214 aa
  • Pseudomonas fluorescens WH6

    Pseudomonas fluorescens WH6

    • Public DB hit
      GI:312960118
      ZP_07774630
    • Hit length
      210 aa
    • E Value
      1.09E-110
    • BLAST Score
      403.7 bits
    • Similarity
      96.67%
    • Coverage
      98.59%
    • Alignment (schematic)

      SEQ ID NO 2
      98.59% cov
      ZP_07774630
      100% cov
    • Alignment Length
      210 aa
  • Pseudomonas syringae pv. maculicola str. ES4326

    Pseudomonas syringae pv. maculicola str. ES4326

    • Public DB hit
      GI:330958462
      EGH58722
    • Hit length
      214 aa
    • E Value
      1.25E-110
    • BLAST Score
      403.7 bits
    • Similarity
      95.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EGH58722
      100% cov
    • Alignment Length
      214 aa
  • Pseudomonas tolaasii

    Pseudomonas tolaasii

    • Public DB hit
      GI:188509913
      ACD56605
    • Hit length
      213 aa
    • E Value
      2.19E-110
    • BLAST Score
      402.9 bits
    • Similarity
      95.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACD56605
      100% cov
    • Alignment Length
      213 aa
  • Pseudomonas syringae pv. oryzae str. 1_6

    Pseudomonas syringae pv. oryzae str. 1_6

    • Public DB hit
      GI:237800460
      ZP_04588921
    • Hit length
      214 aa
    • E Value
      2.89E-110
    • BLAST Score
      402.5 bits
    • Similarity
      95.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_04588921
      100% cov
    • Alignment Length
      214 aa
  • Pseudomonas syringae pv. glycinea str. B076

    Pseudomonas syringae pv. glycinea str. B076

    • Public DB hit
      GI:320324325
      EFW80404
    • Hit length
      214 aa
    • E Value
      4.07E-110
    • BLAST Score
      401.7 bits
    • Similarity
      95.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EFW80404
      100% cov
    • Alignment Length
      214 aa
  • Pseudomonas syringae pv. syringae B728a

    Pseudomonas syringae pv. syringae B728a

    • Public DB hit
      GI:66046128
      YP_235969
    • Hit length
      222 aa
    • E Value
      8.54E-110
    • BLAST Score
      401 bits
    • Similarity
      95.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_235969
      96.4% cov
    • Alignment Length
      214 aa
Occurrence
20 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
5,559
Type
DNA
Locations
Detailed Description

Declared organism:
Pseudomonas fluorescens

Determined organism:
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:461401
      L29642
    • Hit length
      9,117 bp
    • E Value
      0E0
    • BLAST Score
      10,263 bits
    • Similarity
      99.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      L29642
      60.97% cov
    • Alignment Length
      5,559 bp
    • CIGAR string
      4976MN582M mismatches: 1 - insertions: 0 - deletions: 0
  • Pseudomonas protegens Pf-5

    Pseudomonas protegens Pf-5

    • Public DB hit
      GI:68342549
      CP000076
    • Hit length
      7,074,893 bp
    • E Value
      0E0
    • BLAST Score
      852.4 bits
    • Similarity
      87.52%
    • Coverage
      13.37%
    • Alignment (schematic)

      SEQ ID NO 3
      13.37% cov
      CP000076
      0.01% cov
    • Alignment Length
      753 bp
    • CIGAR string
      4613H78M3I9MN2MN5MN9MN4MNIMD7MN2MN12M3N6MD3MI2MIMN2D3MN2MN17MN2MN5MN7MN3MN14MI3MNMNMN2MND2MN3MN5MN5MNMN12M2N5MN3MIMD13M2N17MN5MN2MN7MDMN11MN7MD7MN5MN3MD23MN2MN2MN2MNM2N11MN14MN2MN4MN16MNDMI5MN34MN15MN8MN2MN19MN3MN17MN2MN14MN2MN5MN5MN2MN24MNMN2MN4M2N2MN14MN14MN58MN3MI2MN8M203H mismatches: 74 - insertions: 10 - deletions: 10
  • Pseudomonas putida GB-1

    Pseudomonas putida GB-1

    • Public DB hit
      GI:166857509
      CP000926
    • Hit length
      6,078,430 bp
    • E Value
      0E0
    • BLAST Score
      830.3 bits
    • Similarity
      79.8%
    • Coverage
      21.41%
    • Alignment (schematic)

      SEQ ID NO 3
      21.41% cov
      CP000926
      0.02% cov
    • Alignment Length
      1,223 bp
    • CIGAR string
      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 mismatches: 182 - insertions: 33 - deletions: 32
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229359445
      AM181176
    • Hit length
      6,722,539 bp
    • E Value
      0E0
    • BLAST Score
      811.8 bits
    • Similarity
      86.45%
    • Coverage
      13.44%
    • Alignment (schematic)

      SEQ ID NO 3
      13.44% cov
      AM181176
      0.01% cov
    • Alignment Length
      753 bp
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:327374765
      CP002585
    • Hit length
      6,843,248 bp
    • E Value
      0E0
    • BLAST Score
      793.3 bits
    • Similarity
      85.96%
    • Coverage
      13.44%
    • Alignment (schematic)

      SEQ ID NO 3
      13.44% cov
      CP002585
      0.01% cov
    • Alignment Length
      755 bp
  • Pseudomonas syringae pv. tomato str. DC3000

    Pseudomonas syringae pv. tomato str. DC3000

    • Public DB hit
      GI:28856110
      AE016853
    • Hit length
      6,397,126 bp
    • E Value
      0E0
    • BLAST Score
      754.6 bits
    • Similarity
      85.11%
    • Coverage
      13.44%
    • Alignment (schematic)

      SEQ ID NO 3
      13.44% cov
      AE016853
      0.01% cov
    • Alignment Length
      759 bp
  • Pseudomonas entomophila L48

    Pseudomonas entomophila L48

    • Public DB hit
      GI:95101722
      CT573326
    • Hit length
      5,888,780 bp
    • E Value
      0E0
    • BLAST Score
      717.6 bits
    • Similarity
      84.32%
    • Coverage
      13.38%
    • Alignment (schematic)

      SEQ ID NO 3
      13.38% cov
      CT573326
      0.01% cov
    • Alignment Length
      759 bp
  • Pseudomonas putida KT2440

    Pseudomonas putida KT2440

    • Public DB hit
      GI:24987239
      AE015451
    • Hit length
      6,181,863 bp
    • E Value
      0E0
    • BLAST Score
      704.7 bits
    • Similarity
      84.06%
    • Coverage
      13.4%
    • Alignment (schematic)

      SEQ ID NO 3
      13.4% cov
      AE015451
      0.01% cov
    • Alignment Length
      759 bp
  • Pseudomonas putida F1

    Pseudomonas putida F1

    • Public DB hit
      GI:148509317
      CP000712
    • Hit length
      5,959,964 bp
    • E Value
      0E0
    • BLAST Score
      693.6 bits
    • Similarity
      83.84%
    • Coverage
      13.4%
    • Alignment (schematic)

      SEQ ID NO 3
      13.4% cov
      CP000712
      0.01% cov
    • Alignment Length
      761 bp
  • Pseudomonas syringae pv. phaseolicola 1448A

    Pseudomonas syringae pv. phaseolicola 1448A

    • Public DB hit
      GI:71553748
      CP000058
    • Hit length
      5,928,787 bp
    • E Value
      0E0
    • BLAST Score
      682.5 bits
    • Similarity
      83.31%
    • Coverage
      13.49%
    • Alignment (schematic)

      SEQ ID NO 3
      13.49% cov
      CP000058
      0.01% cov
    • Alignment Length
      761 bp
  • Pseudomonas putida BIRD-1

    Pseudomonas putida BIRD-1

    • Public DB hit
      GI:313496345
      CP002290
    • Hit length
      5,731,541 bp
    • E Value
      0E0
    • BLAST Score
      675.1 bits
    • Similarity
      83.42%
    • Coverage
      13.38%
    • Alignment (schematic)

      SEQ ID NO 3
      13.38% cov
      CP002290
      0.01% cov
    • Alignment Length
      760 bp
  • Pseudomonas fluorescens Pf0-1

    Pseudomonas fluorescens Pf0-1

    • Public DB hit
      GI:253992019
      CP000094
    • Hit length
      6,438,405 bp
    • E Value
      0E0
    • BLAST Score
      665.9 bits
    • Similarity
      83.31%
    • Coverage
      13.33%
    • Alignment (schematic)

      SEQ ID NO 3
      13.33% cov
      CP000094
      0.01% cov
    • Alignment Length
      755 bp
  • Pseudomonas syringae pv. syringae B728a

    Pseudomonas syringae pv. syringae B728a

    • Public DB hit
      GI:63253978
      CP000075
    • Hit length
      6,093,698 bp
    • E Value
      0E0
    • BLAST Score
      665.9 bits
    • Similarity
      83.03%
    • Coverage
      13.44%
    • Alignment (schematic)

      SEQ ID NO 3
      13.44% cov
      CP000075
      0.01% cov
    • Alignment Length
      760 bp
  • Pseudomonas putida W619

    Pseudomonas putida W619

    • Public DB hit
      GI:169757190
      CP000949
    • Hit length
      5,774,330 bp
    • E Value
      0E0
    • BLAST Score
      660.4 bits
    • Similarity
      83.05%
    • Coverage
      13.33%
    • Alignment (schematic)

      SEQ ID NO 3
      13.33% cov
      CP000949
      0.01% cov
    • Alignment Length
      755 bp
  • Pseudomonas aeruginosa PAO1

    Pseudomonas aeruginosa PAO1

    • Public DB hit
      GI:110227054
      AE004091
    • Hit length
      6,264,404 bp
    • E Value
      1.32E-169
    • BLAST Score
      608.7 bits
    • Similarity
      81.82%
    • Coverage
      13.42%
    • Alignment (schematic)

      SEQ ID NO 3
      13.42% cov
      AE004091
      0.01% cov
    • Alignment Length
      770 bp
  • Pseudomonas stutzeri

    Pseudomonas stutzeri

    • Public DB hit
      GI:32128352
      AB088753
    • Hit length
      8,232 bp
    • E Value
      2.21E-167
    • BLAST Score
      601.3 bits
    • Similarity
      82.31%
    • Coverage
      12.9%
    • Alignment (schematic)

      SEQ ID NO 3
      12.9% cov
      AB088753
      8.65% cov
    • Alignment Length
      735 bp
  • Pseudomonas stutzeri DSM 4166

    Pseudomonas stutzeri DSM 4166

    • Public DB hit
      GI:327478612
      CP002622
    • Hit length
      4,689,946 bp
    • E Value
      1.72E-163
    • BLAST Score
      588.4 bits
    • Similarity
      82.09%
    • Coverage
      12.84%
    • Alignment (schematic)

      SEQ ID NO 3
      12.84% cov
      CP002622
      0.02% cov
    • Alignment Length
      737 bp
  • Pseudomonas stutzeri A1501

    Pseudomonas stutzeri A1501

    • Public DB hit
      GI:145568602
      CP000304
    • Hit length
      4,567,418 bp
    • E Value
      1.72E-163
    • BLAST Score
      588.4 bits
    • Similarity
      82.09%
    • Coverage
      12.84%
    • Alignment (schematic)

      SEQ ID NO 3
      12.84% cov
      CP000304
      0.02% cov
    • Alignment Length
      737 bp
  • Pseudomonas mendocina NK-01

    Pseudomonas mendocina NK-01

    • Public DB hit
      GI:328915200
      CP002620
    • Hit length
      5,434,353 bp
    • E Value
      2.26E-152
    • BLAST Score
      551.4 bits
    • Similarity
      80.73%
    • Coverage
      13.31%
    • Alignment (schematic)

      SEQ ID NO 3
      13.31% cov
      CP002620
      0.01% cov
    • Alignment Length
      768 bp
  • Pseudomonas mendocina ymp

    Pseudomonas mendocina ymp

    • Public DB hit
      GI:145573243
      CP000680
    • Hit length
      5,072,807 bp
    • E Value
      2.29E-142
    • BLAST Score
      518.2 bits
    • Similarity
      79.9%
    • Coverage
      13.33%
    • Alignment (schematic)

      SEQ ID NO 3
      13.33% cov
      CP000680
      0.01% cov
    • Alignment Length
      766 bp
  • Azotobacter vinelandii DJ

    Azotobacter vinelandii DJ

    • Public DB hit
      GI:226717097
      CP001157
    • Hit length
      5,365,318 bp
    • E Value
      1.42E-119
    • BLAST Score
      442.5 bits
    • Similarity
      78.02%
    • Coverage
      13.42%
    • Alignment (schematic)

      SEQ ID NO 3
      13.42% cov
      CP001157
      0.01% cov
    • Alignment Length
      769 bp
  • Moraxella catarrhalis BBH18

    Moraxella catarrhalis BBH18

    • Public DB hit
      GI:295919923
      CP002005
    • Hit length
      1,863,286 bp
    • E Value
      7.44E-33
    • BLAST Score
      154.4 bits
    • Similarity
      92.73%
    • Coverage
      1.98%
    • Alignment (schematic)

      SEQ ID NO 3
      1.98% cov
      CP002005
      0.01% cov
    • Alignment Length
      110 bp
  • Cronobacter sakazakii ATCC BAA-894

    Cronobacter sakazakii ATCC BAA-894

    • Public DB hit
      GI:156530483
      CP000783
    • Hit length
      4,368,373 bp
    • E Value
      7.44E-33
    • BLAST Score
      154.4 bits
    • Similarity
      92.66%
    • Coverage
      1.94%
    • Alignment (schematic)

      SEQ ID NO 3
      1.94% cov
      CP000783
      0% cov
    • Alignment Length
      109 bp
  • Alcanivorax borkumensis SK2

    Alcanivorax borkumensis SK2

    • Public DB hit
      GI:110645972
      AM286690
    • Hit length
      3,120,143 bp
    • E Value
      7.44E-33
    • BLAST Score
      154.4 bits
    • Similarity
      90.83%
    • Coverage
      2.14%
    • Alignment (schematic)

      SEQ ID NO 3
      2.14% cov
      AM286690
      0% cov
    • Alignment Length
      120 bp
  • Pantoea ananatis AJ13355

    Pantoea ananatis AJ13355

    • Public DB hit
      GI:327392658
      AP012032
    • Hit length
      4,555,536 bp
    • E Value
      2.68E-32
    • BLAST Score
      152.5 bits
    • Similarity
      98.82%
    • Coverage
      1.53%
    • Alignment (schematic)

      SEQ ID NO 3
      1.53% cov
      AP012032
      0% cov
    • Alignment Length
      85 bp
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
983
Type
DNA
Locations
Detailed Description

Declared organism:
Pseudomonas fluorescens

Determined organism:
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:461401
      L29642
      1 of 6 hits reported for Pseudomonas fluorescens.
    • Hit length
      9,117 bp
    • E Value
      0E0
    • BLAST Score
      1,805.3 bits
    • Similarity
      99.8%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 4
      99.9% cov
      L29642
      10.79% cov
    • Alignment Length
      984 bp
    • CIGAR string
      1H932M2I50M mismatches: 0 - insertions: 2 - deletions: 0
  • Pseudomonas chlororaphis subsp. aureofaciens

    Pseudomonas chlororaphis subsp. aureofaciens

    • Public DB hit
      GI:4680221
      AF115381
    • Hit length
      1,181 bp
    • E Value
      0E0
    • BLAST Score
      1,299.3 bits
    • Similarity
      96.56%
    • Coverage
      79.86%
    • Alignment (schematic)

      SEQ ID NO 4
      79.86% cov
      AF115381
      66.38% cov
    • Alignment Length
      785 bp
    • CIGAR string
      1H76MD112MN27MN13MN68MN2MN65MN41MN5MN5MN17MN38MN11M2N22MN23MN5MN5MN2MN8MN71MN17MN8MN17MN5MN8MN35MN52M197H mismatches: 26 - insertions: 0 - deletions: 1
  • Pseudomonas chlororaphis

    Pseudomonas chlororaphis

    • Public DB hit
      GI:326649652
      JF513195
    • Hit length
      1,183 bp
    • E Value
      0E0
    • BLAST Score
      1,247.6 bits
    • Similarity
      95.63%
    • Coverage
      79.15%
    • Alignment (schematic)

      SEQ ID NO 4
      79.15% cov
      JF513195
      65.68% cov
    • Alignment Length
      778 bp
    • CIGAR string
      4H15MNMN55MD154MN38MN5MN65MN17MN23MN11MN2MN11MN29MN2MN35MN11M2N22MN8MN2MN8MN2MN5MN5MN2MN8MN71MN17MN8MN17MN5MN8MN35MN12MN35M201H mismatches: 33 - insertions: 0 - deletions: 1
  • Pseudomonas protegens Pf-5

    Pseudomonas protegens Pf-5

    • Public DB hit
      GI:68342549
      CP000076
      1 of 2 hits reported for Pseudomonas protegens Pf-5.
    • Hit length
      7,074,893 bp
    • E Value
      0E0
    • BLAST Score
      1,175.6 bits
    • Similarity
      88.47%
    • Coverage
      99.19%
    • Alignment (schematic)

      SEQ ID NO 4
      99.19% cov
      CP000076
      0.01% cov
    • Alignment Length
      980 bp
  • Pseudomonas chlororaphis subsp. aurantiaca

    Pseudomonas chlororaphis subsp. aurantiaca

    • Public DB hit
      GI:238915406
      FJ969507
    • Hit length
      701 bp
    • E Value
      0E0
    • BLAST Score
      1,129.4 bits
    • Similarity
      95.72%
    • Coverage
      71.31%
    • Alignment (schematic)

      SEQ ID NO 4
      71.31% cov
      FJ969507
      100% cov
    • Alignment Length
      701 bp
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229359445
      AM181176
    • Hit length
      6,722,539 bp
    • E Value
      0E0
    • BLAST Score
      1,048.2 bits
    • Similarity
      86.59%
    • Coverage
      97.05%
    • Alignment (schematic)

      SEQ ID NO 4
      97.05% cov
      AM181176
      0.01% cov
    • Alignment Length
      962 bp
  • Pseudomonas fluorescens Pf0-1

    Pseudomonas fluorescens Pf0-1

    • Public DB hit
      GI:253992019
      CP000094
    • Hit length
      6,438,405 bp
    • E Value
      0E0
    • BLAST Score
      968.8 bits
    • Similarity
      85.44%
    • Coverage
      95.32%
    • Alignment (schematic)

      SEQ ID NO 4
      95.32% cov
      CP000094
      0.01% cov
    • Alignment Length
      948 bp
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:327374765
      CP002585
    • Hit length
      6,843,248 bp
    • E Value
      0E0
    • BLAST Score
      952.1 bits
    • Similarity
      85.1%
    • Coverage
      95.32%
    • Alignment (schematic)

      SEQ ID NO 4
      95.32% cov
      CP002585
      0.01% cov
    • Alignment Length
      946 bp
  • Pseudomonas tolaasii

    Pseudomonas tolaasii

    • Public DB hit
      GI:188509912
      EU677189
    • Hit length
      771 bp
    • E Value
      0E0
    • BLAST Score
      893.1 bits
    • Similarity
      87.52%
    • Coverage
      78.54%
    • Alignment (schematic)

      SEQ ID NO 4
      78.54% cov
      EU677189
      100% cov
    • Alignment Length
      777 bp
  • Pseudomonas alkylphenolia

    Pseudomonas alkylphenolia

    • Public DB hit
      GI:148509165
      EF583622
    • Hit length
      2,500 bp
    • E Value
      0E0
    • BLAST Score
      778.6 bits
    • Similarity
      81.71%
    • Coverage
      97.15%
    • Alignment (schematic)

      SEQ ID NO 4
      97.15% cov
      EF583622
      38.2% cov
    • Alignment Length
      973 bp
  • Pseudomonas entomophila L48

    Pseudomonas entomophila L48

    • Public DB hit
      GI:95101722
      CT573326
    • Hit length
      5,888,780 bp
    • E Value
      0E0
    • BLAST Score
      710.2 bits
    • Similarity
      80.71%
    • Coverage
      95.42%
    • Alignment (schematic)

      SEQ ID NO 4
      95.42% cov
      CT573326
      0.02% cov
    • Alignment Length
      959 bp
  • Pseudomonas mendocina NK-01

    Pseudomonas mendocina NK-01

    • Public DB hit
      GI:328915200
      CP002620
    • Hit length
      5,434,353 bp
    • E Value
      0E0
    • BLAST Score
      697.3 bits
    • Similarity
      80.98%
    • Coverage
      91.25%
    • Alignment (schematic)

      SEQ ID NO 4
      91.25% cov
      CP002620
      0.02% cov
    • Alignment Length
      915 bp
  • Pseudomonas putida KT2440

    Pseudomonas putida KT2440

    • Public DB hit
      GI:24987239
      AE015451
    • Hit length
      6,181,863 bp
    • E Value
      0E0
    • BLAST Score
      684.4 bits
    • Similarity
      80.7%
    • Coverage
      91.25%
    • Alignment (schematic)

      SEQ ID NO 4
      91.25% cov
      AE015451
      0.01% cov
    • Alignment Length
      912 bp
  • Pseudomonas putida F1

    Pseudomonas putida F1

    • Public DB hit
      GI:148509317
      CP000712
    • Hit length
      5,959,964 bp
    • E Value
      0E0
    • BLAST Score
      673.3 bits
    • Similarity
      80.5%
    • Coverage
      91.25%
    • Alignment (schematic)

      SEQ ID NO 4
      91.25% cov
      CP000712
      0.02% cov
    • Alignment Length
      913 bp
  • Pseudomonas putida BIRD-1

    Pseudomonas putida BIRD-1

    • Public DB hit
      GI:313496345
      CP002290
    • Hit length
      5,731,541 bp
    • E Value
      0E0
    • BLAST Score
      667.8 bits
    • Similarity
      80.39%
    • Coverage
      91.25%
    • Alignment (schematic)

      SEQ ID NO 4
      91.25% cov
      CP002290
      0.02% cov
    • Alignment Length
      913 bp
  • Pseudomonas aeruginosa PA7

    Pseudomonas aeruginosa PA7

    • Public DB hit
      GI:150958624
      CP000744
    • Hit length
      6,588,339 bp
    • E Value
      0E0
    • BLAST Score
      662.2 bits
    • Similarity
      80.39%
    • Coverage
      91.25%
    • Alignment (schematic)

      SEQ ID NO 4
      91.25% cov
      CP000744
      0.01% cov
    • Alignment Length
      918 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:15886584
      AJ342167
    • Hit length
      712 bp
    • E Value
      0E0
    • BLAST Score
      656.7 bits
    • Similarity
      85.4%
    • Coverage
      65.01%
    • Alignment (schematic)

      SEQ ID NO 4
      65.01% cov
      AJ342167
      89.19% cov
    • Alignment Length
      644 bp
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
642
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:461401
      L29642
      1 of 6 hits reported for Pseudomonas fluorescens.
    • Hit length
      9,117 bp
    • E Value
      0E0
    • BLAST Score
      1,136.8 bits
    • Similarity
      98.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      L29642
      7.04% cov
    • Alignment Length
      642 bp
    • CIGAR string
      17MN35MN38MN20MN146MN29MN20MN2MN229MN97M mismatches: 9 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis subsp. aureofaciens

    Pseudomonas chlororaphis subsp. aureofaciens

    • Public DB hit
      GI:4680221
      AF115381
    • Hit length
      1,181 bp
    • E Value
      0E0
    • BLAST Score
      1,009.4 bits
    • Similarity
      95.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AF115381
      54.36% cov
    • Alignment Length
      642 bp
    • CIGAR string
      17MN35MN59MN6MN13MN68MN2MN53MN11MN17MN20MN2MN5MN5MN17MN38MN11M2N22MN23MN5MN5MN2MN8MN71MN4MN12MN8MN17MN5MN8MN35MN6M mismatches: 32 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis subsp. aurantiaca

    Pseudomonas chlororaphis subsp. aurantiaca

    • Public DB hit
      GI:238915406
      FJ969507
    • Hit length
      701 bp
    • E Value
      0E0
    • BLAST Score
      981.7 bits
    • Similarity
      94.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FJ969507
      91.58% cov
    • Alignment Length
      642 bp
    • CIGAR string
      17MN35MN38MN20MN20MN110MN14MN26MN2MN8MN2MN8MN2MN29MN2MN35MN11M2N22MN8MN2MN8MN2MN5MN5MN2MN6MNMN71MN4MN12MN8MN17MN5MN3MN4MN35MN6M mismatches: 37 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis

    Pseudomonas chlororaphis

    • Public DB hit
      GI:326649652
      JF513195
      1 of 2 hits reported for Pseudomonas chlororaphis.
    • Hit length
      1,183 bp
    • E Value
      0E0
    • BLAST Score
      976.2 bits
    • Similarity
      94.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF513195
      54.27% cov
    • Alignment Length
      642 bp
  • Pseudomonas protegens Pf-5

    Pseudomonas protegens Pf-5

    • Public DB hit
      GI:68342549
      CP000076
      1 of 2 hits reported for Pseudomonas protegens Pf-5.
    • Hit length
      7,074,893 bp
    • E Value
      0E0
    • BLAST Score
      763.8 bits
    • Similarity
      88.36%
    • Coverage
      98.91%
    • Alignment (schematic)

      SEQ ID NO 5
      98.91% cov
      CP000076
      0.01% cov
    • Alignment Length
      636 bp
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229359445
      AM181176
    • Hit length
      6,722,539 bp
    • E Value
      0E0
    • BLAST Score
      710.2 bits
    • Similarity
      86.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AM181176
      0.01% cov
    • Alignment Length
      646 bp
  • Pseudomonas tolaasii

    Pseudomonas tolaasii

    • Public DB hit
      GI:188509912
      EU677189
    • Hit length
      771 bp
    • E Value
      0E0
    • BLAST Score
      710.2 bits
    • Similarity
      86.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EU677189
      83.27% cov
    • Alignment Length
      645 bp
  • Pseudomonas fluorescens Pf0-1

    Pseudomonas fluorescens Pf0-1

    • Public DB hit
      GI:253992019
      CP000094
    • Hit length
      6,438,405 bp
    • E Value
      0E0
    • BLAST Score
      691.8 bits
    • Similarity
      86.41%
    • Coverage
      98.91%
    • Alignment (schematic)

      SEQ ID NO 5
      98.91% cov
      CP000094
      0.01% cov
    • Alignment Length
      640 bp
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:327374765
      CP002585
    • Hit length
      6,843,248 bp
    • E Value
      0E0
    • BLAST Score
      654.8 bits
    • Similarity
      85.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002585
      0.01% cov
    • Alignment Length
      646 bp
  • uncultured Pseudomonas sp.

    uncultured Pseudomonas sp.

    • Public DB hit
      GI:144925973
      EF417476
      1 of 7 hits reported for uncultured Pseudomonas sp..
    • Hit length
      536 bp
    • E Value
      0E0
    • BLAST Score
      647.4 bits
    • Similarity
      88.48%
    • Coverage
      83.49%
    • Alignment (schematic)

      SEQ ID NO 5
      83.49% cov
      EF417476
      100% cov
    • Alignment Length
      538 bp
  • Pseudomonas sp. RB1-2-40

    Pseudomonas sp. RB1-2-40

    • Public DB hit
      GI:93009151
      DQ464397
    • Hit length
      539 bp
    • E Value
      2.44E-168
    • BLAST Score
      601.3 bits
    • Similarity
      87.08%
    • Coverage
      82.87%
    • Alignment (schematic)

      SEQ ID NO 5
      82.87% cov
      DQ464397
      98.7% cov
    • Alignment Length
      534 bp
  • Pseudomonas sp. BSB1-2-37

    Pseudomonas sp. BSB1-2-37

    • Public DB hit
      GI:144925943
      EF417461
    • Hit length
      546 bp
    • E Value
      3.16E-167
    • BLAST Score
      597.6 bits
    • Similarity
      86.72%
    • Coverage
      83.96%
    • Alignment (schematic)

      SEQ ID NO 5
      83.96% cov
      EF417461
      98.72% cov
    • Alignment Length
      542 bp
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
18
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
24
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
1,005
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Pseudomonas chlororaphis O6

    Pseudomonas chlororaphis O6

    • Public DB hit
      GI:33150230
      AY336077
    • Hit length
      2,970 bp
    • E Value
      0E0
    • BLAST Score
      1,628 bits
    • Similarity
      95.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY336077
      33.84% cov
    • Alignment Length
      1,007 bp
    • CIGAR string
      72MN79MN2MN17MN18MN67MN2MN8MN57MN4MN2MN11MN8MN11MN21MN8MN11MD2MI2MN63MN28MN50MN8MN20MN7MN54MD2MNI2MN8MN68MN2MN66MN13MN8MN2MN26MN2MN35MN47MN5MN11MN11MN24M mismatches: 39 - insertions: 2 - deletions: 2
  • Pseudomonas chlororaphis

    Pseudomonas chlororaphis

    • Public DB hit
      GI:103488975
      DQ525801
      1 of 2 hits reported for Pseudomonas chlororaphis.
    • Hit length
      1,258 bp
    • E Value
      0E0
    • BLAST Score
      1,616.9 bits
    • Similarity
      95.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ525801
      79.89% cov
    • Alignment Length
      1,007 bp
    • CIGAR string
      47MN24MN79MN2MN17MN18MN67MN2MN8MN57MN4MN2MN11MN8MN11MN21MN8MN11MD2MI2MN63MN28MN50MN8MN20MN7MN54MD2MNI2MN8MN68MN2MN66MN13MN5MN2MN2MN26MN2MN35MN47MN5MN11MN11MN24M mismatches: 41 - insertions: 2 - deletions: 2
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:327374765
      CP002585
    • Hit length
      6,843,248 bp
    • E Value
      0E0
    • BLAST Score
      1,153.4 bits
    • Similarity
      87.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP002585
      0.01% cov
    • Alignment Length
      1,018 bp
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:148469866
      EF587266
      1 of 2 hits reported for Pseudomonas fluorescens.
    • Hit length
      4,380 bp
    • E Value
      0E0
    • BLAST Score
      1,127.6 bits
    • Similarity
      86.94%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 8
      99.8% cov
      EF587266
      22.97% cov
    • Alignment Length
      1,018 bp
  • Pseudomonas fluorescens Pf0-1

    Pseudomonas fluorescens Pf0-1

    • Public DB hit
      GI:253992019
      CP000094
    • Hit length
      6,438,405 bp
    • E Value
      0E0
    • BLAST Score
      1,122 bits
    • Similarity
      86.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP000094
      0.02% cov
    • Alignment Length
      1,019 bp
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229359445
      AM181176
    • Hit length
      6,722,539 bp
    • E Value
      0E0
    • BLAST Score
      1,107.3 bits
    • Similarity
      86.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AM181176
      0.01% cov
    • Alignment Length
      1,016 bp
  • Pseudomonas sp. CT07

    Pseudomonas sp. CT07

    • Public DB hit
      GI:186702712
      EU424108
    • Hit length
      1,011 bp
    • E Value
      0E0
    • BLAST Score
      1,101.7 bits
    • Similarity
      86.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU424108
      100% cov
    • Alignment Length
      1,020 bp
  • Pseudomonas protegens Pf-5

    Pseudomonas protegens Pf-5

    • Public DB hit
      GI:68342549
      CP000076
      1 of 2 hits reported for Pseudomonas protegens Pf-5.
    • Hit length
      7,074,893 bp
    • E Value
      0E0
    • BLAST Score
      1,083.3 bits
    • Similarity
      86.14%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 8
      99.9% cov
      CP000076
      0.01% cov
    • Alignment Length
      1,017 bp
  • Pseudomonas brassicacearum

    Pseudomonas brassicacearum

    • Public DB hit
      GI:193089924
      EU595545
    • Hit length
      1,290 bp
    • E Value
      0E0
    • BLAST Score
      1,062.9 bits
    • Similarity
      85.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU595545
      78.14% cov
    • Alignment Length
      1,020 bp
  • Pseudomonas sp. 122

    Pseudomonas sp. 122

    • Public DB hit
      GI:157688388
      EU147502
    • Hit length
      1,005 bp
    • E Value
      0E0
    • BLAST Score
      1,048.2 bits
    • Similarity
      85.6%
    • Coverage
      99.3%
    • Alignment (schematic)

      SEQ ID NO 8
      99.3% cov
      EU147502
      99.3% cov
    • Alignment Length
      1,007 bp
  • Pseudomonas tolaasii

    Pseudomonas tolaasii

    • Public DB hit
      GI:2289783
      AB006073
    • Hit length
      3,122 bp
    • E Value
      0E0
    • BLAST Score
      1,003.9 bits
    • Similarity
      84.86%
    • Coverage
      99.3%
    • Alignment (schematic)

      SEQ ID NO 8
      99.3% cov
      AB006073
      32.16% cov
    • Alignment Length
      1,017 bp
  • Pseudomonas protegens

    Pseudomonas protegens

    • Public DB hit
      GI:58257338
      AF245440
    • Hit length
      4,179 bp
    • E Value
      0E0
    • BLAST Score
      1,000.2 bits
    • Similarity
      84.69%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 8
      99.9% cov
      AF245440
      24.1% cov
    • Alignment Length
      1,019 bp
  • Pseudomonas alkylphenolia

    Pseudomonas alkylphenolia

    • Public DB hit
      GI:116668481
      EF026091
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      926.3 bits
    • Similarity
      83.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EF026091
      36.13% cov
    • Alignment Length
      1,016 bp
  • Pseudomonas entomophila L48

    Pseudomonas entomophila L48

    • Public DB hit
      GI:95101722
      CT573326
    • Hit length
      5,888,780 bp
    • E Value
      0E0
    • BLAST Score
      883.8 bits
    • Similarity
      82.65%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 8
      99.9% cov
      CT573326
      0.02% cov
    • Alignment Length
      1,020 bp
  • Pseudomonas putida KT2440

    Pseudomonas putida KT2440

    • Public DB hit
      GI:24987239
      AE015451
    • Hit length
      6,181,863 bp
    • E Value
      0E0
    • BLAST Score
      869 bits
    • Similarity
      82.35%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 8
      99.9% cov
      AE015451
      0.02% cov
    • Alignment Length
      1,020 bp
  • Pseudomonas putida W619

    Pseudomonas putida W619

    • Public DB hit
      GI:169757190
      CP000949
    • Hit length
      5,774,330 bp
    • E Value
      0E0
    • BLAST Score
      863.5 bits
    • Similarity
      82.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP000949
      0.02% cov
    • Alignment Length
      1,021 bp
  • Pseudomonas oleovorans

    Pseudomonas oleovorans

    • Public DB hit
      GI:25900788
      AJ519340
    • Hit length
      1,081 bp
    • E Value
      0E0
    • BLAST Score
      861.7 bits
    • Similarity
      82.2%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 8
      99.9% cov
      AJ519340
      93.15% cov
    • Alignment Length
      1,017 bp
  • Pseudomonas putida GB-1

    Pseudomonas putida GB-1

    • Public DB hit
      GI:166857509
      CP000926
    • Hit length
      6,078,430 bp
    • E Value
      0E0
    • BLAST Score
      856.1 bits
    • Similarity
      82.14%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 8
      99.9% cov
      CP000926
      0.02% cov
    • Alignment Length
      1,019 bp
  • Pseudomonas syringae pv. tomato str. DC3000

    Pseudomonas syringae pv. tomato str. DC3000

    • Public DB hit
      GI:28856110
      AE016853
    • Hit length
      6,397,126 bp
    • E Value
      0E0
    • BLAST Score
      856.1 bits
    • Similarity
      82.17%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AE016853
      0.02% cov
    • Alignment Length
      1,021 bp
  • Pseudomonas syringae pv. tomato

    Pseudomonas syringae pv. tomato

    • Public DB hit
      GI:3132687
      AF061853
    • Hit length
      1,119 bp
    • E Value
      0E0
    • BLAST Score
      856.1 bits
    • Similarity
      82.17%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF061853
      90.08% cov
    • Alignment Length
      1,021 bp
  • Pseudomonas putida BIRD-1

    Pseudomonas putida BIRD-1

    • Public DB hit
      GI:313496345
      CP002290
    • Hit length
      5,731,541 bp
    • E Value
      0E0
    • BLAST Score
      850.6 bits
    • Similarity
      82.06%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 8
      99.9% cov
      CP002290
      0.02% cov
    • Alignment Length
      1,020 bp
  • Pseudomonas putida F1

    Pseudomonas putida F1

    • Public DB hit
      GI:148509317
      CP000712
    • Hit length
      5,959,964 bp
    • E Value
      0E0
    • BLAST Score
      850.6 bits
    • Similarity
      82.06%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 8
      99.9% cov
      CP000712
      0.02% cov
    • Alignment Length
      1,020 bp
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
334
Type
peptide
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Pseudomonas chlororaphis O6

    Pseudomonas chlororaphis O6

    • Public DB hit
      GI:33150232
      AAP97086
    • Hit length
      334 aa
    • E Value
      0E0
    • BLAST Score
      657.5 bits
    • Similarity
      97.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAP97086
      100% cov
    • Alignment Length
      334 aa
    • CIGAR string
      24MN85MN20MN2MN3MN22MN8MN29MN133M mismatches: 8 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis

    Pseudomonas chlororaphis

    • Public DB hit
      GI:48727551
      AAT46075
    • Hit length
      334 aa
    • E Value
      0E0
    • BLAST Score
      655.2 bits
    • Similarity
      97.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAT46075
      100% cov
    • Alignment Length
      334 aa
    • CIGAR string
      24MN27MN57MN20MN2MN3MN22MN8MN29MN133M mismatches: 9 - insertions: 0 - deletions: 0
  • Pseudomonas fluorescens Pf0-1

    Pseudomonas fluorescens Pf0-1

    • Public DB hit
      GI:77457359
      YP_346864
    • Hit length
      335 aa
    • E Value
      0E0
    • BLAST Score
      643.3 bits
    • Similarity
      96.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_346864
      100% cov
    • Alignment Length
      335 aa
    • CIGAR string
      21MNM2N5MI2MNMN75MN20MN2MN3MN22MN8MN29MN133M mismatches: 12 - insertions: 1 - deletions: 0
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:330807812
      YP_004352274
    • Hit length
      335 aa
    • E Value
      0E0
    • BLAST Score
      643.3 bits
    • Similarity
      96.42%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_004352274
      100% cov
    • Alignment Length
      335 aa
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:148469868
      ABQ65863
    • Hit length
      335 aa
    • E Value
      0E0
    • BLAST Score
      639.4 bits
    • Similarity
      96.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ABQ65863
      100% cov
    • Alignment Length
      335 aa
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229588834
      YP_002870953
    • Hit length
      334 aa
    • E Value
      0E0
    • BLAST Score
      638.6 bits
    • Similarity
      95.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_002870953
      100% cov
    • Alignment Length
      334 aa
  • Pseudomonas sp. CT07

    Pseudomonas sp. CT07

    • Public DB hit
      GI:186702713
      ACC91623
    • Hit length
      336 aa
    • E Value
      2.78E-180
    • BLAST Score
      636.3 bits
    • Similarity
      96.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ACC91623
      100% cov
    • Alignment Length
      336 aa
  • Pseudomonas sp. 122

    Pseudomonas sp. 122

    • Public DB hit
      GI:157688389
      ABV64841
    • Hit length
      334 aa
    • E Value
      2.95E-180
    • BLAST Score
      636.3 bits
    • Similarity
      95.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ABV64841
      100% cov
    • Alignment Length
      334 aa
  • Pseudomonas brassicacearum

    Pseudomonas brassicacearum

    • Public DB hit
      GI:193089925
      ACF15191
    • Hit length
      335 aa
    • E Value
      1.53E-179
    • BLAST Score
      633.6 bits
    • Similarity
      95.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ACF15191
      100% cov
    • Alignment Length
      335 aa
  • Pseudomonas protegens Pf-5

    Pseudomonas protegens Pf-5

    • Public DB hit
      GI:157169065
      YP_258338
    • Hit length
      335 aa
    • E Value
      8.3E-179
    • BLAST Score
      631.3 bits
    • Similarity
      95.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_258338
      100% cov
    • Alignment Length
      335 aa
  • Pseudomonas fluorescens WH6

    Pseudomonas fluorescens WH6

    • Public DB hit
      GI:312959424
      ZP_07773941
    • Hit length
      335 aa
    • E Value
      1.61E-177
    • BLAST Score
      627.1 bits
    • Similarity
      94.93%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_07773941
      100% cov
    • Alignment Length
      335 aa
  • Pseudomonas tolaasii

    Pseudomonas tolaasii

    • Public DB hit
      GI:2289784
      BAA21674
    • Hit length
      336 aa
    • E Value
      3.24E-176
    • BLAST Score
      622.9 bits
    • Similarity
      94.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      BAA21674
      100% cov
    • Alignment Length
      336 aa
  • Pseudomonas protegens

    Pseudomonas protegens

    • Public DB hit
      GI:58257340
      AAK30051
    • Hit length
      335 aa
    • E Value
      9.42E-174
    • BLAST Score
      614.8 bits
    • Similarity
      94.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAK30051
      100% cov
    • Alignment Length
      335 aa
  • Pseudomonas alkylphenolia

    Pseudomonas alkylphenolia

    • Public DB hit
      GI:116668483
      ABK15514
    • Hit length
      335 aa
    • E Value
      1.05E-173
    • BLAST Score
      614.4 bits
    • Similarity
      94.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ABK15514
      100% cov
    • Alignment Length
      336 aa
  • Pseudomonas syringae pv. syringae 642

    Pseudomonas syringae pv. syringae 642

    • Public DB hit
      GI:302187929
      ZP_07264602
    • Hit length
      335 aa
    • E Value
      1.39E-173
    • BLAST Score
      614 bits
    • Similarity
      92.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_07264602
      100% cov
    • Alignment Length
      335 aa
  • Pseudomonas entomophila L48

    Pseudomonas entomophila L48

    • Public DB hit
      GI:104783164
      YP_609662
    • Hit length
      335 aa
    • E Value
      2.05E-173
    • BLAST Score
      613.6 bits
    • Similarity
      93.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_609662
      100% cov
    • Alignment Length
      336 aa
  • Pseudomonas syringae pv. aesculi str. NCPPB 3681

    Pseudomonas syringae pv. aesculi str. NCPPB 3681

    • Public DB hit
      GI:289626003
      ZP_06458957
    • Hit length
      335 aa
    • E Value
      3.32E-173
    • BLAST Score
      612.8 bits
    • Similarity
      92.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_06458957
      100% cov
    • Alignment Length
      335 aa
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder

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