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This invention also provides transgenic plants and progeny seed comprising the transgenic plant cells where the plants are selected for having an enhanced trait selected from the group of traits consisting of enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil. Also disclosed are methods for manufacturing transgenic seed and plants with enhanced traits.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"}]},"abstract_lang":["en"],"has_abstract":true,"claim":{"en":[{"text":"1 . A plant cell nucleus with stably integrated, recombinant DNA, wherein a. said recombinant DNA comprises a promoter that is functional in said plant cell and that is operably linked to a protein coding DNA encoding a protein having an amino acid sequence comprising a Pfam domain module selected from the group consisting of bZIP — 1, AOX, DUF902::DUF906, LRRNT — 2::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1:: LRR — 1::LRR — 1::LRR — 1::Pkinase, ABC_tran::ABC2_membrane::PDR_CDR::ABC_tran::ABC2_membrane, Redoxin, RNase_PH::RNase_PH_C, AAA, GFO_IDH_MocA::GFO_IDH_MocA_C, GRAS, Metallophos, Ribosomal_L18p, Sugar_tr, CDC48_N::AAA::AAA, Pkinase, PAS — 3::PAS — 3::Pkinase, CRAL_TRIO_N::CRAL_TRIO, p450, RRM — 1::RRM — 1, SRF-TF, G-alpha, TPR — 1::TPR — 1, FAE1_CUT1_RppA::ACP_syn_III_C, Globin::FAD_binding 6::NAD_binding 1, TPR — 1::TPR — 2, IF4E, F-box::LRR — 2, FBPase, LRR — 2::LRR — 1::LRR — 1::LRR — 1, HSF_DNA-bind, Dehydrin, TP_methylase, Response_reg:: Myb_DNA-binding, KNOX1::KNOX2:: ELK::Homeobox, Catalase, GTP_EFTU::GTP_EFTU_D2::GTP_EFTU_D3, TPR — 1::TPR — 1::TPR — 1::TPR — 1, ADH_zinc_N, Globin, CS, GH3, HLH, Ribonuclease_T2, TPR — 1::TPR — 1::TPR — 1::U-box, Dicty_CAR, Cyclin_N::Cyclin_C, MFS — 1, Acid_phosphat_A, Methyltransf — 7, TPR — 1::TPR — 1::TPR — 2, IBN_N, polyprenyl_synt, AhpC-TSA, Oxidored_FMN, Hydrolase, DS, Response_reg::CCT, Aa_trans, peroxidase, E1-E2_ATPase, F-box::Tub, Response_reg, Rho_GDI, E2F_TDP, 14-3-3, AT_hook::AT_hook::AT_hook::AT_hook::YDG_SRA::Pre-SET::SET, Tub, KOW::eIF-5a, MtN3_slv::MtN3_slv, GTP_EFTU, UQ_con, MAT1, E2F_TDP::E2F_TDP, HEAT::HEAT::HEAT::FAT::PI3_PI4_kinase::FATC, HMG_CoA_synt_N::HMG_CoA_synt_C, TAP42, DEAD::Helicase_C::DSHCT, NDK, Clp_N::Clp_N::AAA:AAA — 2, Cyclin_N, OPT, Orn_Arg_deC_N::Orn_DAP_Arg_deC, PAS::Pkinase, FtsH_ext::AAA::Peptidase_M41, Wzy_C, Mlo, AP2::B3, SET, FKBP_C::FKBP_C::FKBP_C::TPR — 1::TPR — 1, TPR — 2::TPR — 1::TPR — 1::TPR — 2::TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1, Pyridoxal_deC, RNase_PH, RB_A::RB_B, WD40::WD40::WD40::WD40::WD40::WD40, SNF2_N::Helicase_C, Aminotran — 1 — 2, Gemini_AL1:: Gemini_AL1_M, Hexapep::Hexapep::Hexapep::Hexapep, AP2::AP2, Abhydrolase — 1, PAS — 2::GAF::Phytochrome::PAS::PAS::HisKA::HATPase_c, Cystatin::Cystatin, Pfam module annoation, Cystatin, F-box::FBA — 1, 2OG-FeII_Oxy, FA_desaturase, HSP20, FBPase_glpX, E1-E2_ATPase::Hydrolase, Mito_carr::Mito_carr::Mito_carr, Cellulose_synt, Linker_histone::AT_hook::AT_hook::AT_hook::AT_hook, UPF0016::UPF0016, GDI, Glyco_hydro — 32N::Glyco_hydro — 32C, TPR — 1::TPR — 1::TPR — 2::U-box, ADH_N::ADH_zinc_N, GDA1_CD39, MIP, CRAL_TRIO, TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1, LEA — 4::LEA — 4, Carb_anhydrase, PTR2, Cu_bind_like, HD-ZIP_N::Homeobox::HALZ, eIF-5a, Asp, S1::S1::S1, SAM_decarbox, WD40::WD40, Citrate_synt, SRF-TF::K-box, HSP9_HSP12, PI3_PI4_kinase, Ferritin, Xan_ur_permease, Myb_DNA-binding::Myb_DNA-binding, zf-NF-X1::zf-NF-X1::zf-NF-X1::zf-NF-X1::zf-NF-X1, AP2, and Myb_DNA-binding; b. said recombinant DNA comprises a promoter that is functional in said plant cell and that is operably linked to a protein coding DNA encoding a protein comprising an amino acid sequence with at least 90% identity to a consensus amino acid sequence selected from the group consisting of SEQ ID NO: 24153 through SEQ ID NO: 24174; c. said recombinant DNA comprises a promoter that is functional in plant cells and that is operably linked to a protein coding DNA encoding a protein comprising an amino acid sequence selected from the group consisting of 467, 507, 517, 535, 620, and homologs thereof listed in table 7; or d. said recombinant DNA comprises a promoter that is functional in said plant cell and that is operably linked to a protein coding recombinant DNA encoding a protein having an amino acid sequence having at least 70% identity to an amino acid sequence selected from the group consisting of 511 and 513; and wherein said plant cell nucleus is selected by screening a population of transgenic plants that have said recombinant DNA and an enhanced trait as compared to control plants that do not have said recombinant DNA in their nuclei; and wherein said enhanced trait is selected from group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, enhanced heat tolerance, enhanced resistance to salt exposure, enhanced shade tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"2 . The plant cell nucleus of claim 1 wherein said protein coding DNA encodes a protein having an amino acid sequence selected from the group consisting of SEQ ID NO: 340 through SEQ ID NO: 24149.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"3 . The plant cell nucleus of claim 1 further comprising DNA expressing a protein that provides tolerance from exposure to an herbicide applied at levels that are lethal to a wild type of said plant cell.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"4 . The plant cell nucleus of claim 3 wherein the agent of said herbicide is a glyphosate, dicamba, or glufosinate compound.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"5 . A transgenic plant cell or plant comprising a plurality of plant cells with the plant cell nucleus of claim 1 .","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"6 . The transgenic plant cell or plant of claim 5 which is homozygous for said recombinant DNA.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"7 . A transgenic seed comprising a plurality of plant cells with the plant cell nucleus of claim 1 .","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"8 . The transgenic seed of claim 7 from a corn, soybean, cotton, canola, alfalfa, wheat or rice plant.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"9 . A transgenic pollen grain comprising a haploid derivative of the plant cell nucleus of claim 1 .","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"10 . A method for manufacturing non-natural, transgenic seed of claim 7 that can be used to produce a crop of transgenic plants with an enhanced trait resulting from expression of stably-integrated recombinant DNA wherein said method for manufacturing said transgenic seed comprising: (a) screening a population of plants for said enhanced trait and said recombinant DNA wherein individual plants in said population can exhibit said trait at a level less than, essentially the same as or greater than the level that said trait is exhibited in control plants which do not express the recombinant DNA, wherein said enhanced trait is selected from the group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, enhanced heat tolerance, enhanced resistance to salt exposure, enhanced shade tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil, (b) selecting from said population one or more plants that exhibit said trait at a level greater than the level that said trait is exhibited in control plants, and (c) collecting seed from selected plants selected from step b.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"11 . The method of claim 10 further comprising (d) verifying that said recombinant DNA is stably integrated in said selected plants, and (e) analyzing tissue of said selected plant to determine the expression or suppression of a gene that encodes an protein having the function of a protein having an amino acid sequence selected from the group consisting of one of SEQ ID NO:340-678.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"12 . A method of producing hybrid corn seed comprising: (a) acquiring hybrid corn seed from a herbicide tolerant corn plant which also has stably-integrated, recombinant DNA in a nucleus of claim 1 ; (b) producing corn plants from said hybrid corn seed, wherein a fraction of the plants produced from said hybrid corn seed is homozygous for said recombinant DNA, a fraction of the plants produced from said hybrid corn seed is hemizygous for said recombinant DNA, and a fraction of the plants produced from said hybrid corn seed has none of said recombinant DNA; (c) selecting corn plants which are homozygous and hemizygous for said recombinant DNA by treating with an herbicide; (d) collecting seed from herbicide-treated-surviving corn plants and planting said seed to produce further progeny corn plants; (e) repeating steps (c) and (d) at least once to produce an inbred corn line; and (f) crossing said inbred corn line with a second corn line to produce hybrid seed.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"13 . A plant cell nucleus with stably integrated, recombinant DNA, wherein a. said recombinant DNA comprises a promoter that is functional in said plant cell and that is operably linked to a protein coding DNA encoding a protein having an amino acid sequence comprising a Pfam domain module selected from the group consisting of FBPase, Cyclin_N::Cyclin_C, FA_desaturase, and FBPase_glpX; and wherein said plant cell nucleus is selected by screening a population of transgenic plants that have said recombinant DNA and an enhanced trait as compared to control plants that do not have said recombinant DNA in their nuclei; and wherein said enhanced trait is selected from group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"14 . The plant cell nucleus of claim 13 wherein said protein coding DNA encodes a protein having an amino acid sequence selected from the group consisting of SEQ ID NO: 385, 462, 463, and 525.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"15 . A transgenic plant cell or plant comprising a plurality of plant cells with the plant cell nucleus of claim 13 .","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"16 . The transgenic plant cell or plant of claim 15 which is homozygous for said recombinant DNA.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"17 . A transgenic seed comprising a plurality of plant cells with the plant cell nucleus of claim 13 .","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"18 . A transgenic seed of claim 17 which is collected from a plant that is selected as having enhanced water use efficiency.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"19 . A method for manufacturing non-natural, transgenic seed of claim 17 that can be used to produce a crop of transgenic plants with an enhanced trait resulting from expression of stably-integrated recombinant DNA wherein said method for manufacturing said transgenic seed comprising: (a) screening a population of plants for said enhanced trait and said recombinant DNA wherein individual plants in said population can exhibit said trait at a level less than, essentially the same as or greater than the level that said trait is exhibited in control plants which do not express the recombinant DNA, wherein said enhanced trait is selected from the group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, enhanced heat tolerance, enhanced resistance to salt exposure, enhanced shade tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil, (b) selecting from said population one or more plants that exhibit said trait at a level greater than the level that said trait is exhibited in control plants, and (c) collecting seed from selected plants selected from step b.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"},{"text":"20 . A method of producing hybrid corn seed comprising: (a) acquiring hybrid corn seed from a herbicide tolerant corn plant which also has stably-integrated, recombinant DNA in a nucleus of claim 13 ; (b) producing corn plants from said hybrid corn seed, wherein a fraction of the plants produced from said hybrid corn seed is homozygous for said recombinant DNA, a fraction of the plants produced from said hybrid corn seed is hemizygous for said recombinant DNA, and a fraction of the plants produced from said hybrid corn seed has none of said recombinant DNA; (c) selecting corn plants which are homozygous and hemizygous for said recombinant DNA by treating with an herbicide; (d) collecting seed from herbicide-treated-surviving corn plants and planting said seed to produce further progeny corn plants; (e) repeating steps (c) and (d) at least once to produce an inbred corn line; and (f) crossing said inbred corn line with a second corn line to produce hybrid seed.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"}]},"claim_lang":["en"],"has_claim":true,"description":{"en":{"text":"CROSS-REFERENCE TO RELATED APPLICATIONS This application is a continuation-in-part of prior application Ser. No. 10/310,154 filed Dec. 4, 2002, which application claims priority under 35 U.S.C. § 119(e) of U.S. Provisional Application No. 60/337,358 filed Dec. 4, 2001, all of which applications are incorporated herein by reference in their entirety. INCORPORATION OF SEQUENCE LISTING Two copies of the sequence listing (Copy 1 and Copy 2) and a computer readable form (CRF) of the sequence listing, all on CD-Rs, each containing the text file named 38-21(52796)DIV_seqListing.txt, which is 87,272, 189 bytes (measured in MS-WINDOWS), were created on July 13 and 16, 2007 and are herein incorporated by reference. INCORPORATION OF COMPUTER PROGRAM LISTING Two copies of the Computer Program Listing (Copy 1 and Copy 2) containing folders hmmer-2.3.2 and 164pfamDir, all on CD-Rs are incorporated herein by reference in their entirety. Folder hmmer-2.3.2 contains the source code and other associated file for implementing the HMMer software for Pfam analysis. Folder 164pfamDir contains 164 Pfam Hidden Markov Models. Both folders were created on CD-R on Jul. 17, 2007, having a total size of 15,204,353 bytes (measured in MS-WINDOWS). INCORPORATION OF TABLES Two copies of Table 7 (Copy 1 and Copy 2), all on CD-Rs, each containing the file named 38-21(52796)DIV_table7.doc, which is 512 kilobytes (measured in MS-WINDOWS), were created on Jul. 16, 2007, and comprise 68 pages when viewed in MS Word, are herein incorporated by reference. FIELD OF THE INVENTION Disclosed herein are inventions in the field of plant genetics and developmental biology. More specifically, the present inventions provide plant cells with recombinant DNA for providing an enhanced trait in a transgenic plant, plants comprising such cells, seed and pollen derived from such plants, methods of making and using such cells, plants, seeds and pollen. BACKGROUND OF THE INVENTION Transgenic plants with enhanced agronomic traits such as yield, environmental stress tolerance, pest resistance, herbicide tolerance, improved seed compositions, and the like are desired by both farmers and consumers. Although considerable efforts in plant breeding have provided significant gains in desired traits, the ability to introduce specific DNA into plant genomes provides further opportunities for generation of plants with improved and/or unique traits. The ability to develop transgenic plants with enhanced traits depends in part on the identification of useful recombinant DNA for production of transformed plants with enhanced properties, e.g. by actually selecting a transgenic plant from a screen for such enhanced property. An object of this invention is to provide transgenic plant cell nuclei, plant cells, plants and seeds by screening transgenic crop plants for one of more enhanced agronomic traits where the nucleus in cells of the plant or seed has recombinant DNA provided herein. A further object of the invention is to provide screening methods requiring routine experimentation by which such transgenic plant cell nuclei, cells, plants and seeds can be identified by making a reasonable number of transgenic events and engaging in screening identified in this specification and illustrated in the examples. SUMMARY OF THE INVENTION This invention provides plant cell nuclei with recombinant DNA that imparts enhanced agronomic traits in transgenic plants having the nuclei in their cells, e.g. enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein or enhanced seed oil. Such recombinant DNA in a plant cell nucleus of this invention is provided in as a construct comprising a promoter that is functional in plant cells and that is operably linked to DNA that encodes a protein. Such DNA in the construct is sometimes defined by protein domains of an encoded protein targeted for production or suppression., e.g. a “Pfam domain module” (as defined herein below) from the group of Pfam domain modules identified in Table 21 (page 72). Alternatively, e.g. where a Pfam domain module is not available, such DNA in the construct is defined a consensus amino acid sequence of an encoded protein that is targeted for production e.g. a protein having amino acid sequence with at least 90% identity to a consensus amino acid sequence in the group of SEQ ID NO: 24153 through SEQ ID NO: 24174. Alternatively, in other cases where neither a Pfam domain module nor a consensus amino acid sequence is available, such DNA in the construct is defined by the sequence of a specific encoded and/or its homologous proteins. Other aspects of the invention are specifically directed to transgenic plant cells comprising the recombinant DNA of the invention, transgenic plants comprising a plurality of such plant cells, progeny transgenic seed, embryo and transgenic pollen from such plants. Such plant cells are selected from a population of transgenic plants regenerated from plant cells transformed with recombinant DNA and that express the protein by screening transgenic plants in the population for an enhanced trait as compared to control plants that do not have said recombinant DNA, where the enhanced trait is selected from group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil. In yet another aspect of the invention the plant cells, plants, seeds, embryo and pollen further comprise DNA expressing a protein that provides tolerance from exposure to an herbicide applied at levels that are lethal to a wild type of said plant cell. Such tolerance is especially useful not only as an advantageous trait in such plants but is also useful in a selection step in the methods of the invention. In aspects of the invention the agent of such herbicide is a glyphosate, dicamba, or glufosinate compound. Yet other aspects of the invention provide transgenic plants which are homozygous for the recombinant DNA and transgenic seed of the invention from corn, soybean, cotton, canola, alfalfa, wheat or rice plants. This invention also provides methods for manufacturing non-natural, transgenic seed that can be used to produce a crop of transgenic plants with an enhanced trait resulting from expression of stably-integrated, recombinant DNA in the nucleus of the plant cells. More specifically the method comprises (a) screening a population of plants for an enhanced trait and recombinant DNA, where individual plants in the population can exhibit the trait at a level less than, essentially the same as or greater than the level that the trait is exhibited in control plants which do not express the recombinant DNA; (b) selecting from the population one or more plants that exhibit the trait at a level greater than the level that said trait is exhibited in control plants and (c) collecting seed from a selected plant. Such method further comprises steps (d) verifying that the recombinant DNA is stably integrated in said selected plants; and (e) analyzing tissue of a selected plant to determine the production of a protein having the function of a protein encoded by a recombinant DNA with a sequence of one of SEQ ID NO: 1-339; In one aspect of the invention the plants in the population further comprise DNA expressing a protein that provides tolerance to exposure to an herbicide applied at levels that are lethal to wild type plant cells and where the selecting is effected by treating the population with the herbicide, e.g. a glyphosate, dicamba, or glufosinate compound. In another aspect of the invention the transgenic plants are selected by identifying plants with the enhanced trait. The methods are especially useful for manufacturing corn, soybean, cotton, alfalfa, wheat or rice seed selected as having one of the enhanced traits described above. Another aspect of the invention provides a method of producing hybrid corn seed comprising acquiring hybrid corn seed from a herbicide tolerant corn plant which also has stably-integrated, recombinant DNA comprising a promoter that is (a) functional in plant cells and (b) is operably linked to DNA that encodes a protein having at least one domain of amino acids in a sequence that exceeds the Pfam gathering cutoff for amino acid sequence alignment with a protein domain family identified by a Pfam name in the group of Pfam names identified in Table 12. The methods further comprise producing corn plants from said hybrid corn seed, wherein a fraction of the plants produced from said hybrid corn seed is homozygous for said recombinant DNA, a fraction of the plants produced from said hybrid corn seed is hemizygous for said recombinant DNA, and a fraction of the plants produced from said hybrid corn seed has none of said recombinant DNA; selecting corn plants which are homozygous and hemizygous for said recombinant DNA by treating with an herbicide; collecting seed from herbicide-treated-surviving corn plants and planting said seed to produce further progeny corn plants; repeating the selecting and collecting steps at least once to produce an inbred corn line; and crossing the inbred corn line with a second corn line to produce hybrid seed. BRIEF DESCRIPTION OF THE DRAWINGS FIG. 1 is a consensus amino acid sequence of SEQ ID NO: 358 and its homologs. FIGS. 2-4 are plasmid maps. DETAILED DESCRIPTION OF THE INVENTION In the attached sequence listing: SEQ ID NO: 1-339 are nucleotide sequences of the coding strand of DNA for “genes” used in the recombinant DNA imparting an enhanced trait in plant cells, i.e. each represents a coding sequence for a protein; SEQ ID NO: 340-678 are amino acid sequences of the cognate protein of the “genes” with nucleotide coding sequences 1-339; SEQ ID NO: 679-24149 are amino acid sequences of homologous proteins; SEQ ID NO: 24150 is a nucleotide sequence of a plasmid base vector useful for corn transformation; SEQ ID NO: 24151 is a nucleotide sequence of a plasmid base vector useful for soybean transformation; SEQ ID NO: 24152 is a nucleotide sequence of a plasmid base vector useful for cotton transformation; and SEQ ID NO: 24153-24174 are consensus sequences. Table 1 lists the protein SEQ ID Nos and their corresponding consensus SEQ ID Nos. TABLE 1PEP SEQConsensusID NOGene IDSEQ ID NO357PHE000002524153358PHE000002624154369PHE000003324155397PHE000006324156468PHE000016824157497PHE000022324158508PHE000023524159512PHE000024024160514PHE000024224161516PHE000024924162518PHE000025124163541PHE000027624164551PHE000028924165570PHE000030924166578PHE000031724167608PHE000035324168645PHE000042124169653PHE000043024170658PHE000043524171660PHE000043724172668PHE000045424173669PHE000045524174 DETAILED DESCRIPTION OF THE INVENTION As used herein a “plant cell” means a plant cell that is transformed with stably-integrated, non-natural, recombinant DNA, e.g. by Agrobacterium -mediated transformation or by baombardment using microparticles coated with recombinant DNA or other means. A plant cell of this invention can be an originally-transformed plant cell that exists as a microorganism or as a progeny plant cell that is regenerated into differentiated tissue, e.g. into a transgenic plant with stably-integrated, non-natural recombinant DNA, or seed or pollen derived from a progeny transgenic plant. As used herein a “transgenic plant” means a plant whose genome has been altered by the stable integration of recombinant DNA. A transgenic plant includes a plant regenerated from an originally-transformed plant cell and progeny transgenic plants from later generations or crosses of a transformed plant. As used herein “recombinant DNA” means DNA which has been a genetically engineered and constructed outside of a cell including DNA containing naturally occurring DNA or cDNA or synthetic DNA. As used herein “consensus sequence” means an artificial sequence of amino acids in a conserved region of an alignment of amino acid sequences of homologous proteins, e.g. as determined by a CLUSTALW alignment of amino acid sequence of homolog proteins. As used herein “homolog” means a protein in a group of proteins that perform the same biological function, e.g. proteins that belong to the same Pfam protein family and that provide a common enhanced trait in transgenic plants of this invention. Homologs are expressed by homologous genes. Homologous genes include naturally occurring alleles and artificially-created variants. Degeneracy of the genetic code provides the possibility to substitute at least one base of the protein encoding sequence of a gene with a different base without causing the amino acid sequence of the polypeptide produced from the gene to be changed. Hence, a recombinant DNA molecule useful in the present invention may have any base sequence that has been changed from SEQ ID NO: 1 through SEQ ID NO: 339 substitution in accordance with degeneracy of the genetic code. Homologs are proteins that, when optimally aligned, have at least 60% identity, more preferably about 70% or higher, more preferably at least 80% and even more preferably at least 90% identity over the full length of a protein identified as being associated with imparting an enhanced trait when expressed in plant cells. Homologs include proteins with an amino acid sequence that has at least 90% identity to a consensus amino acid sequence of proteins and homologs disclosed herein. Homologs are identified by comparison of amino acid sequence, e.g. manually or by use of a computer-based tool using known homology-based search algorithms such as those commonly known and referred to as BLAST, FASTA, and Smith-Waterman. A local sequence alignment program, e.g. BLAST, can be used to search a database of sequences to find similar sequences, and the summary Expectation value (E-value) used to measure the sequence base similarity. As a protein hit with the best E-value for a particular organism may not necessarily be an ortholog or the only ortholog, a reciprocal query is used in the present invention to filter hit sequences with significant E-values for ortholog identification. The reciprocal query entails search of the significant hits against a database of amino acid sequences from the base organism that are similar to the sequence of the query protein. A hit is a likely ortholog, when the reciprocal query's best hit is the query protein itself or a protein encoded by a duplicated gene after speciation. A further aspect of the invention comprises functional homolog proteins that differ in one or more amino acids from those of disclosed protein as the result of conservative amino acid substitutions, for example substitutions are among: acidic (negatively charged) amino acids such as aspartic acid and glutamic acid; basic (positively charged) amino acids such as arginine, histidine, and lysine; neutral polar amino acids such as glycine, serine, threonine, cysteine, tyrosine, asparagine, and glutamine; neutral nonpolar (hydrophobic) amino acids such as alanine, leucine, isoleucine, valine, proline, phenylalanine, tryptophan, and methionine; amino acids having aliphatic side chains such as glycine, alanine, valine, leucine, and isoleucine; amino acids having aliphatic-hydroxyl side chains such as serine and threonine; amino acids having amide-containing side chains such as asparagine and glutamine; amino acids having aromatic side chains such as phenylalanine, tyrosine, and tryptophan; amino acids having basic side chains such as lysine, arginine, and histidine; amino acids having sulfur-containing side chains such as cysteine and methionine; naturally conservative amino acids such as valine-leucine, valine-isoleucine, phenylalanine-tyrosine, lysine-arginine, alanine-valine, aspartic acid-glutamic acid, and asparagine-glutamine. A further aspect of the homologs encoded by DNA useful in the transgenic plants of the invention are those proteins that differ from a disclosed protein as the result of deletion or insertion of one or more amino acids in a native sequence. As used herein, “percent identity” means the extent to which two optimally aligned DNA or protein segments are invariant throughout a window of alignment of components, for example nucleotide sequence or amino acid sequence. An “identity fraction” for aligned segments of a test sequence and a reference sequence is the number of identical components that are shared by sequences of the two aligned segments divided by the total number of sequence components in the reference segment over a window of alignment which is the smaller of the full test sequence or the full reference sequence. “Percent identity” (“% identity”) is the identity fraction times 100. The “Pfam” database is a large collection of multiple sequence alignments and hidden Markov models covering many common protein families, e.g. Pfam version 19.0 (December 2005) contains alignments and models for 8183 protein families and is based on the Swissprot 47.0 and SP-TrEMBL 30.0 protein sequence databases. See S. R. Eddy, “Profile Hidden Markov Models”, Bioinformatics 14:755-763, 1998. The Pfam database is currently maintained and updated by the Pfam Consortium. The alignments represent some evolutionary conserved structure that has implications for the protein's function. Profile hidden Markov models (profile HMMs) built from the protein family alignments are useful for automatically recognizing that a new protein belongs to an existing protein family even if the homology by alignment appears to be low. A “Pfam domain module” is a representation of Pfam domains in a protein, in order from N terminus to C terminus. In a Pfam domain module individual Pfam domains are separated by double colons “::”. The order and copy number of the Pfam domains from N to C terminus are attributes of a Pfam domain module. Although the copy number of repetitive domains is important, varying copy number often enables a similar function. Thus, a Pfam domain module with multiple copies of a domain should define an equivalent Pfam domain module with variance in the number of multiple copies. A Pfam domain module is not specific for distance between adjacent domains, but contemplates natural distances and variations in distance that provide equivalent function. The Pfam database contains both narrowly- and broadly-defined domains, leading to identification of overlapping domains on some proteins. A Pfam domain module is characterized by non-overlapping domains. Where there is overlap, the domain having a function that is more closely associated with the function of the protein (based on the E value of the Pfam match) is selected. Once one DNA is identified as encoding a protein which imparts an enhanced trait when expressed in transgenic plants, other DNA encoding proteins with the same Pfam domain module are identified by querying the amino acid sequence of protein encoded by candidate DNA against the Hidden Markov Models which characterizes the Pfam domains using HMMER software, a current version of which is provided in the appended computer listing. Candidate proteins meeting the same Pfam domain module are in the protein family and have cognate DNA that is useful in constructing recombinant DNA for the use in the plant cells of this invention. Hidden Markov Model databases for use with HMMER software in identifying DNA expressing protein with a common Pfam domain module for recombinant DNA in the plant cells of this invention are also included in the appended computer listing. Version 19.0 of the HMMER software and Pfam databases were used to identify known domains in the proteins corresponding to amino acid sequence of SEQ ID NO: 340 through SEQ ID NO: 678. All DNA encoding proteins that have scores higher than the gathering cutoff disclosed in Table 23 by Pfam analysis disclosed herein can be used in recombinant DNA of the plant cells of this invention, e.g. for selecting transgenic plants having enhanced agronomic traits. The relevant Pfams modules for use in this invention, as more specifically disclosed below, are bZIP — 1, AOX, DUF902::DUF906, LRRNT — 2::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::LRR — 1::Pkinase, ABC_tran::ABC2_membrane::PDR_CDR::ABC_tran::ABC2_membrane, Redoxin, RNase_PH::RNase_PH_C, AAA, GFO_IDH_MocA::GFO_IDH_MocA_C, GRAS, Metallophos, Ribosomal_L18p, Sugar_tr, CDC48_N::AAA::AAA, Pkinase, PAS — 3::PAS — 3::Pkinase, CRAL_TRIO_N::CRAL_TRIO, p450, RRM — 1::RRM — 1, SRF-TF, G-alpha, TPR — 1::TPR — 1, FAE1_CUT1_RppA::ACP_syn_III_C, Globin::FAD_binding — 6::NAD_binding — 1, TPR — 1::TPR — 2, IF4E, F-box::LRR — 2, FBPase, LRR — 2::LRR — 1::LRR — 1::LRR — 1, HSF_DNA-bind, Dehydrin, TP_methylase, Response_reg::Myb_DNA-binding, KNOX1::KNOX2::ELK::Homeobox, Catalase, GTP_EFTU::GTP_EFTU_D2::GTP_EFTU_D3, TPR — 1::TPR — 1::TPR — 1::TPR — 1, ADH_zinc_N, Globin, CS, GH3, HLH, Ribonuclease_T2, TPR — 1::TPR — 1::TPR — 1::U-box, Dicty_CAR, Cyclin_N::Cyclin_C, MFS — 1, Acid_phosphat_A, Methyltransf — 7, TPR — 1::TPR — 1::TPR — 2, IBN_N, polyprenyl_synt, AhpC-TSA, Oxidored_FMN, Hydrolase, DS, Response_reg::CCT, Aa_trans, peroxidase, E1-E2_ATPase, F-box::Tub, Response_reg, Rho_GDI, E2F_TDP, 14-3-3, AT_hook::AT_hook::AT_hook::AT_hook::YDG_SRA::Pre-SET::SET, Tub, KOW::eIF-5a, MtN3_slv::MtN3_slv, GTP_EFTU, UQ_con, MAT1, E2F_TDP::E2F_TDP, HEAT::HEAT::HEAT::FAT::PI3_PI4_kinase::FATC, HMG_CoA_synt_N::HMG_CoA_synt_C, TAP42, DEAD::Helicase_C::DSHCT, NDK, Clp_N::Clp_N::AAA::AAA — 2, Cyclin_N, OPT, Orn_Arg_deC_N::Orn_DAP_Arg_deC, PAS::Pkinase, FtsH_ext::AAA::Peptidase_M41, Wzy_C, Mlo, AP2::B3, SET, FKBP_C::FKBP_C::FKBP_C::TPR — 1::TPR — 1, TPR — 2::TPR — 1::TPR — 1::TPR — 2::TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1, Pyridoxal_deC, RNase_PH, RB_A::RB_B, WD40::WD40::WD40::WD40::WD40::WD40, SNF2_N::Helicase_C, Aminotran — 1 — 2, Gemini_AL1::Gemini_AL1_M, Hexapep::Hexapep::Hexapep::Hexapep, AP2::AP2, Abhydrolase — 1, PAS — 2::GAF::Phytochrome::PAS::PAS::HisKA::HATPase_c, Cystatin::Cystatin, Pfam module annoation, Cystatin, F-box::FBA — 1, 20G-FeII_Oxy, FA_desaturase, HSP20, FBPase_glpX, E1-E2_ATPase::Hydrolase, Mito_carr::Mito_carr::Mito_carr, Cellulose_synt, Linker_histone::AT_hook::AT_hook::AT_hook::AT_hook, UPF0016::UPF0016, GDI, Glyco_hydro — 32N::Glyco_hydro — 32C, TPR — 1::TPR — 1::TPR — 2::U-box, ADH_N::ADH_zinc_N, GDA1_CD39, MIP, CRAL_TRIO, TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1::TPR — 1, LEA — 4::LEA — 4, Carb_anhydrase, PTR2, Cu_bind_like, HD-ZIP_N::Homeobox::HALZ, eIF-5a, Asp, S1::S1::S1, SAM_decarbox, WD40::WD40, Citrate_synt, SRF-TF::K-box, HSP9_HSP12, PI3_PI4_kinase, Ferritin, Xan_ur_permease, Myb_DNA-binding::Myb_DNA-binding, zf-NF-X1::zf-NF-X1::zf-NF-X1::zf-NF-X1::zf-NF-X1, AP2, and Myb_DNA-binding. As used herein “promoter” means regulatory DNA for initializing transcription. A “plant promoter” is a promoter capable of initiating transcription in plant cells whether or not its origin is a plant cell, e.g. is it well known that Agrobacterium promoters are functional in plant cells. Thus, plant promoters include promoter DNA obtained from plants, plant viruses and bacteria such as Agrobacterium and Bradyrhizobium bacteria. Examples of promoters under developmental control include promoters that preferentially initiate transcription in certain tissues, such as leaves, roots, or seeds. Such promoters are referred to as “tissue preferred”. Promoters that initiate transcription only in certain tissues are referred to as “tissue specific”. A “cell type” specific promoter primarily drives expression in certain cell types in one or more organs, for example, vascular cells in roots or leaves. An “inducible” or “repressible” promoter is a promoter which is under environmental control. Examples of environmental conditions that may effect transcription by inducible promoters include anaerobic conditions, or certain chemicals, or the presence of light. Tissue specific, tissue preferred, cell type specific, and inducible promoters constitute the class of “non-constitutive” promoters. A “constitutive” promoter is a promoter which is active under most conditions. As used herein “operably linked” means the association of two or more DNA fragments in a DNA construct so that the function of one, e.g. protein-encoding DNA, is controlled by the other, e.g. a promoter. As used herein “expressed” means produced, e.g. a protein is expressed in a plant cell when its cognate DNA is transcribed to mRNA that is translated to the protein. As used herein a “control plant” means a plant that does not contain the recombinant DNA that expressed a protein that impart an enhanced trait. A control plant is to identify and select a transgenic plant that has an enhance trait. A suitable control plant can be a non-transgenic plant of the parental line used to generate a transgenic plant, i.e. devoid of recombinant DNA. A suitable control plant may in some cases be a progeny of a hemizygous transgenic plant line that is does not contain the recombinant DNA, known as a negative segregant. As used herein an “enhanced trait” means a characteristic of a transgenic plant that includes, but is not limited to, an enhance agronomic trait characterized by enhanced plant morphology, physiology, growth and development, yield, nutritional enhancement, disease or pest resistance, or environmental or chemical tolerance. In more specific aspects of this invention enhanced trait is selected from group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil. In an important aspect of the invention the enhanced trait is enhanced yield including increased yield under non-stress conditions and increased yield under environmental stress conditions. Stress conditions may include, for example, drought, shade, fungal disease, viral disease, bacterial disease, insect infestation, nematode infestation, cold temperature exposure, heat exposure, osmotic stress, reduced nitrogen nutrient availability, reduced phosphorus nutrient availability and high plant density. “Yield” can be affected by many properties including without limitation, plant height, pod number, pod position on the plant, number of internodes, incidence of pod shatter, grain size, efficiency of nodulation and nitrogen fixation, efficiency of nutrient assimilation, resistance to biotic and abiotic stress, carbon assimilation, plant architecture, resistance to lodging, percent seed germination, seedling vigor, and juvenile traits. Yield can also be affected by efficiency of germination (including germination in stressed conditions), growth rate (including growth rate in stressed conditions), ear number, seed number per ear, seed size, composition of seed (starch, oil, protein) and characteristics of seed fill. Increased yield of a transgenic plant of the present invention can be measured in a number of ways, including test weight, seed number per plant, seed weight, seed number per unit area (i.e. seeds, or weight of seeds, per acre), bushels per acre, tonnes per acre, tons per acre, kilo per hectare. For example, maize yield may be measured as production of shelled corn kernels per unit of production area, for example in bushels per acre or metric tons per hectare, often reported on a moisture adjusted basis, for example at 15.5 percent moisture. Increased yield may result from improved utilization of key biochemical compounds, such as nitrogen, phosphorous and carbohydrate, or from improved responses to environmental stresses, such as cold, heat, drought, salt, and attack by pests or pathogens. Recombinant DNA used in this invention can also be used to provide plants having improved growth and development, and ultimately increased yield, as the result of modified expression of plant growth regulators or modification of cell cycle or photosynthesis pathways. Also of interest is the generation of transgenic plants that demonstrate enhanced yield with respect to a seed component that may or may not correspond to an increase in overall plant yield. Such properties include enhancements in seed oil, seed molecules such as tocopherol, protein and starch, or oil particular oil components as may be manifest by alterations in the ratios of seed components. A subset of the nucleic molecules of this invention includes fragments of the disclosed recombinant DNA consisting of oligonucleotides of at least 15, preferably at least 16 or 17, more preferably at least 18 or 19, and even more preferably at least 20 or more, consecutive nucleotides. Such oligonucleotides are fragments of the larger molecules having a sequence selected from the group consisting of SEQ ID NO:1 through SEQ ID NO: 339, and find use, for example as probes and primers for detection of the polynucleotides of the present invention. DNA constructs are assembled using methods well known to persons of ordinary skill in the art and typically comprise a promoter operably linked to DNA, the expression of which provides the enhanced agronomic trait. Other construct components may include additional regulatory elements, such as 5′ leasders and introns for enhancing transcription, 3′ untranslated regions (such as polyadenylation signals and sites), DNA for transit or signal peptides. Numerous promoters that are active in plant cells have been described in the literature. These include promoters present in plant genomes as well as promoters from other sources, including nopaline synthase (NOS) promoter and octopine synthase (OCS) promoters carried on tumor-inducing plasmids of Agrobacterium tumefaciens , caulimovirus promoters such as the cauliflower mosaic virus. For instance, see U.S. Pat. Nos. 5,858,742 and 5,322,938, which disclose versions of the constitutive promoter derived from cauliflower mosaic virus (CaMV35S), U.S. Pat. No. 5,641,876, which discloses a rice actin promoter, U.S. Patent Application Publication 2002/0192813A1, which discloses 5′,3′ and intron elements useful in the design of effective plant expression vectors, U.S. patent application Ser. No. 09/757,089, which discloses a maize chloroplast aldolase promoter, U.S. patent application Ser. No. 08/706,946, which discloses a rice glutelin promoter, U.S. patent application Ser. No. 09/757,089, which discloses a maize aldolase (FDA) promoter, and U.S. Patent Application Ser. No. 60/310, 370, which discloses a maize nicotianamine synthase promoter, all of which are incorporated herein by reference. These and numerous other promoters that function in plant cells are known to those skilled in the art and available for use in recombinant polynucleotides of the present invention to provide for expression of desired genes in transgenic plant cells. In other aspects of the invention, preferential expression in plant green tissues is desired. Promoters of interest for such uses include those from genes such as Arabidopsis thaliana ribulose-1,5-bisphosphate carboxylase (Rubisco) small subunit (Fischhoff et al. (1992) Plant Mol. Biol. 20:81-93), aldolase and pyruvate orthophosphate dikinase (PPDK) (Taniguchi et al. (2000) Plant Cell Physiol. 41(1):42-48). Furthermore, the promoters may be altered to contain multiple “enhancer sequences” to assist in elevating gene expression. Such enhancers are known in the art. By including an enhancer sequence with such constructs, the expression of the selected protein may be enhanced. These enhancers often are found 5′ to the start of transcription in a promoter that functions in eukaryotic cells, but can often be inserted upstream (5′) or downstream (3′) to the coding sequence. In some instances, these 5′ enhancing elements are introns. Particularly useful as enhancers are the 5′ introns of the rice actin 1 (see U.S. Pat. No. 5,641,876) and rice actin 2 genes, the maize alcohol dehydrogenase gene intron, the maize heat shock protein 70 gene intron (U.S. Pat. No. 5,593,874) and the maize shrunken 1 gene. In other aspects of the invention, sufficient expression in plant seed tissues is desired to affect improvements in seed composition. Exemplary promoters for use for seed composition modification include promoters from seed genes such as napin (U.S. Pat. No. 5,420,034), maize L3 oleosin (U.S. Pat. No. 6,433,252), zein Z27 (Russell et al. (1997) Transgenic Res. 6(2):157-166), globulin 1 (Belanger et al (1991) Genetics 129:863-872), glutelin 1 (Russell (1997) supra), and peroxiredoxin antioxidant (Perl) (Stacy et al. (1996) Plant Mol. Biol. 31(6):1205-1216). Recombinant DNA constructs prepared in accordance with the invention will also generally include a 3′ element that typically contains a polyadenylation signal and site. Well-known 3′ elements include those from Agrobacterium tumefaciens genes such as nos 3′, tml 3′, tmr 3′, tms 3′, ocs 3′, tr7 3′, for example disclosed in U.S. Pat. No. 6,090,627, incorporated herein by reference; 3′ elements from plant genes such as wheat ( Triticum aesevitum ) heat shock protein 17 (Hsp17 3′), a wheat ubiquitin gene, a wheat fructose-1,6-biphosphatase gene, a rice glutelin gene a rice lactate dehydrogenase gene and a rice beta-tubulin gene, all of which are disclosed in U.S. published patent application 2002/0192813 A1, incorporated herein by reference; and the pea ( Pisum sativum ) ribulose biphosphate carboxylase gene (rbs 3′), and 3′ elements from the genes within the host plant. Constructs and vectors may also include a transit peptide for targeting of a gene to a plant organelle, particularly to a chloroplast, leucoplast or other plastid organelle. For descriptions of the use of chloroplast transit peptides see U.S. Pat. No. 5,188,642 and U.S. Pat. No. 5,728,925, incorporated herein by reference. For description of the transit peptide region of an Arabidopsis EPSPS gene useful in the present invention, see Klee, H. J. et al ( MGG (1987) 210:437-442). Transgenic plants comprising or derived from plant cells of this invention transformed with recombinant DNA can be further enhanced with stacked traits, e.g. a crop plant having an enhanced trait resulting from expression of DNA disclosed herein in combination with herbicide and/or pest resistance traits. For example, genes of the current invention can be stacked with other traits of agronomic interest, such as a trait providing herbicide resistance, or insect resistance, such as using a gene from Bacillus thuringensis to provide resistance against lepidopteran, coliopteran, homopteran, hemiopteran, and other insects. Herbicides for which transgenic plant tolerance has been demonstrated and the method of the present invention can be applied include, but are not limited to, glyphosate, dicamba, glufosinate, sulfonylurea, bromoxynil and norflurazon herbicides. Polynucleotide molecules encoding proteins involved in herbicide tolerance are well-known in the art and include, but are not limited to, a polynucleotide molecule encoding 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) disclosed in U.S. Pat. Nos. 5,094,945; 5,627,061; 5,633,435 and 6,040,497 for imparting glyphosate tolerance; polynucleotide molecules encoding a glyphosate oxidoreductase (GOX) disclosed in U.S. Pat. No. 5,463,175 and a glyphosate-N-acetyl transferase (GAT) disclosed in U.S. Patent Application publication 2003/0083480 A1 also for imparting glyphosate tolerance; dicamba monooxygenase disclosed in U.S. Patent Application publication 2003/0135879 A1 for imparting dicamba tolerance; a polynucleotide molecule encoding bromoxynil nitrilase (Bxn) disclosed in U.S. Pat. No. 4,810,648 for imparting bromoxynil tolerance; a polynucleotide molecule encoding phytoene desaturase (crtI) described in Misawa et al, (1993) Plant J. 4:833-840 and in Misawa et al, (1994) Plant J. 6:481-489 for norflurazon tolerance; a polynucleotide molecule encoding acetohydroxyacid synthase (AHAS, aka ALS) described in Sathasiivan et al. (1990) Nucl. Acids Res. 18:2188-2193 for imparting tolerance to sulfonylurea herbicides; polynucleotide molecules known as bar genes disclosed in DeBlock, et al. (1987) EMBO J. 6:2513-2519 for imparting glufosinate and bialaphos tolerance; polynucleotide molecules disclosed in U.S. Patent Application Publication 2003/010609 A1 for imparting N-amino methyl phosphonic acid tolerance; polynucleotide molecules disclosed in U.S. Pat. No. 6,107,549 for impartinig pyridine herbicide resistance; molecules and methods for imparting tolerance to multiple herbicides such as glyphosate, atrazine, ALS inhibitors, isoxoflutole and glufosinate herbicides are disclosed in U.S. Pat. No. 6,376,754 and U.S. Patent Application Publication 2002/0112260, all of said U.S. Patents and Patent Application Publications are incorporated herein by reference. Molecules and methods for imparting insect/nematode/virus resistance are disclosed in U.S. Pat. Nos. 5,250,515; 5,880,275; 6,506,599; 5,986,175 and U.S. Patent Application Publication 2003/0150017 A1, all of which are incorporated herein by reference. Plant Cell Transformation Methods Numerous methods for transforming plant cells with recombinant DNA are known in the art and may be used in the present invention. Two commonly used methods for plant transformation are Agrobacterium -mediated transformation and microprojectile bombardment. Microprojectile bombardment methods are illustrated in U.S. Pat. Nos. 5,015,580 (soybean); 5,550,318 (corn); 5,538,880 (corn); 5,914,451 (soybean); 6,160,208 (corn); 6,399,861 (corn) and 6,153,812 (wheat) and Agrobacterium -mediated transformation is described in U.S. Pat. Nos. 5,159,135 (cotton); 5,824,877 (soybean); 5,463,174 (canola); 5,591,616 (corn); and 6,384,301 (soybean), all of which are incorporated herein by reference. For Agrobacterium tumefaciens based plant transformation system, additional elements present on transformation constructs will include T-DNA left and right border sequences to facilitate incorporation of the recombinant polynucleotide into the plant genome. In general it is useful to introduce recombinant DNA randomly, i.e. at a non-specific location, in the genome of a target plant line. In special cases it may be useful to target recombinant DNA insertion in order to achieve site-specific integration, for example to replace an existing gene in the genome, to use an existing promoter in the plant genome, or to insert a recombinant polynucleotide at a predetermined site known to be active for gene expression. Several site specific recombination systems exist which are known to function inplants including cre-lox as disclosed in U.S. Pat. No. 4,959,317 and FLP-FRT as disclosed in U.S. Pat. No. 5,527,695, both incorporated herein by reference. Transformation methods of this invention are preferably practiced in tissue culture on media and in a controlled environment. “Media” refers to the numerous nutrient mixtures that are used to grow cells in vitro, that is, outside of the intact living organism. Recipient cell targets include, but are not limited to, meristem cells, hypocotyls, calli, immature embryos and gametic cells such as microspores, pollen, sperm and egg cells. It is contemplated that any cell from which a fertile plant may be regenerated is useful as a recipient cell. Callus may be initiated from tissue sources including, but not limited to, immature embryos, hypocotyls, seedling apical meristems, microspores and the like. Cells capable of proliferating as callus are also recipient cells for genetic transformation. Practical transformation methods and materials for making transgenic plants of this invention, for example various media and recipient target cells, transformation of immature embryo cells and subsequent regeneration of fertile transgenic plants are disclosed in U.S. Pat. Nos. 6,194,636 and 6,232,526, which are incorporated herein by reference. The seeds of transgenic plants can be harvested from fertile transgenic plants and be used to grow progeny generations of transformed plants of this invention including hybrid plants line for selection of plants having an enhanced trait. In addition to direct transformation of a plant with a recombinant DNA, transgenic plants can be prepared by crossing a first plant having a recombinant DNA with a second plant lacking the DNA. For example, recombinant DNA can be introduced into a first plant line that is amenable to transformation to produce a transgenic plant which can be crossed with a second plant line to introgress the recombinant DNA into the second plant line. A transgenic plant with recombinant DNA providing an enhanced trait, e.g. enhanced yield, can be crossed with transgenic plant line having other recombinant DNA that confers another trait, for example herbicide resistance or pest resistance, to produce progeny plants having recombinant DNA that confers both traits. Typically, in such breeding for combining traits the transgenic plant donating the additional trait is a male line and the transgenic plant carrying the base traits is the female line. The progeny of this cross will segregate such that some of the plants will carry the DNA for both parental traits and some will carry DNA for one parental trait; such plants can be identified by markers associated with parental recombinant DNA, e.g. marker identification by analysis for recombinant DNA or, in the case where a selectable marker is linked to the recombinant, by application of the selecting agent such as a herbicide for use with a herbicide tolerance marker, or by selection for the enhanced trait. Progeny plants carrying DNA for both parental traits can be crossed back into the female parent line multiple times, for example usually 6 to 8 generations, to produce a progeny plant with substantially the same genotype as one original transgenic parental line but for the recombinant DNA of the other transgenic parental line In the practice of transformation DNA is typically introduced into only a small percentage of target plant cells in any one transformation experiment. Marker genes are used to provide an efficient system for identification of those cells that are stably transformed by receiving and integrating a recombinant DNA molecule into their genomes. Preferred marker genes provide selective markers which confer resistance to a selective agent, such as an antibiotic or herbicide. Any of the herbicides to which plants of this invention may be resistant are useful agents for selective markers. Potentially transformed cells are exposed to the selective agent. In the population of surviving cells will be those cells where, generally, the resistance-conferring gene is integrated and expressed at sufficient levels to permit cell survival. Cells may be tested further to confirm stable integration of the exogenous DNA. Commonly used selective marker genes include those conferring resistance to antibiotics such as kanamycin and paromomycin (nptII), hygromycin B (aph IV) spectinomycin (aadA) and gentamycin (aac3 and aacC4) or resistance to herbicides such as glufosinate (bar or pat), dicamba (DMO) and glyphosate (aroA or EPSPS). Examples of such selectable markers are illustrated in U.S. Pat. Nos. 5,550,318; 5,633,435; 5,780,708 and 6,118,047, all of which are incorporated herein by reference. Selectable markers which provide an ability to visually identify transformants can also be employed, for example, a gene expressing a colored or fluorescent protein such as a luciferase or green fluorescent protein (GFP) or a gene expressing a beta-glucuronidase or uidA gene (GUS) for which various chromogenic substrates are known. Plant cells that survive exposure to the selective agent, or plant cells that have been scored positive in a screening assay, may be cultured in regeneration media and allowed to mature into plants. Developing plantlets regenerated from transformed plant cells can be transferred to plant growth mix, and hardened off, for example, in an environmentally controlled chamber at about 85% relative humidity, 600 ppm CO 2 , and 25-250 microeinsteins m −2 s −1 of light, prior to transfer to a greenhouse or growth chamber for maturation. Plants are regenerated from about 6 weeks to 10 months after a transformant is identified, depending on the initial tissue, and the plant species. Plants may be pollinated using conventional plant breeding methods known to those of skill in the art and seed produced, for example self-pollination is commonly used with transgenic corn. The regenerated transformed plant or its progeny seed or plants can be tested for expression of the recombinant DNA and selected for the presence of enhanced agronomic trait. Transgenic Plants and Seed Transgenic plants derived from the plant cells of this invention are grown to generate transgenic plants having an enhanced trait as compared to a control plant and produce transgenic seed and haploid pollen of this invention. Such plants with enhanced traits are identified by selection of transformed plants or progeny seed for the enhanced trait. For efficiency a selection method is designed to evaluate multiple transgenic plants (events) comprising the recombinant DNA, for example multiple plants from 2 to 20 or more transgenic events. Transgenic plants grown from transgenic seed provided herein demonstrate improved agronomic traits that contribute to increased yield or other trait that provides increased plant value, including, for example, improved seed quality. Of particular interest are plants having enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil. Table 2 provides a list of protein encoding DNA (“genes”) that are useful as recombinant DNA for production of transgenic plants with enhanced agronomic trait. Column headings in Table 2 refer to the following information: “PEP SEQ ID NO” refers to a particular amino acid sequence in the Sequence Listing“PHE ID” refers to an arbitrary number used to identify a particular recombinant DNA corresponding to the translated protein encoded by the polynucleotide.“NUC SEQ ID NO” refers to a particular nucleic acid sequence in the Sequence Listing which defines a polynucleotide used in a recombinant DNA of this invention.“GENE NAME” refers to a common name for the recombinant DNA.“CODING SEQUENCE” refers to peptide coding segments of the corresponding recombinant DNA.“SPECIES” refers to the organism from which the recombinant DNA was derived. TABLE 2PEPNUCSEQ IDSEQ IDNOPhe IDNOGene NameCODING SEQUENCESpecies340PHE00000011maize cellulose synthase113-3061Zea mays(eskimo 2)341PHE00000062Arabidopsis RAV2/G981-1136Arabidopsis thaliana342PHE00000073rice G9-like 1336-1430Oryza sativa343PHE00000084rice G9-like 2572-1522Oryza sativa344PHE00000105rice G975201-283, 516-1161Oryza sativa345PHE00002786corn G97541-679Zea mays346PHE00000117corn Glossy 15385-1722Zea mays347PHE00000128corn aquaporin RS811-747Zea mays348PHE00000149rice cycD213-324, 623-709, 813-911,Oryza sativa1003-1204, 1314-1438,1529-1774349PHE000021510invW1108-1489, 1813-2684, 6105-6266,Oryza sativa6417-6658,350PHE000001511rice GCR1312-500, 1123-1154, 1384-1553,Oryza sativa2048-2163, 2724-2825,2946-3002, 3331-3474,3930-4000, 4118-4223351PHE000001612corn Knotted1181-1257Zea mays352PHE000001813corn AAA-ATPase 2104-2533Zea mays353PHE000001914rice AOX1b (alternative4531-4851, 5011-5139, 6072-6560,Oryza sativaoxidase)6663-6722354PHE000002015Emericella nidulans alxA2189-2442, 2492-2783, 2843-3352Emericella nidulans355PHE000002216corn AAP6-like96-1547Zea mays356PHE000002417corn unknown protein441-2390Zea mays357PHE000002518corn GRF1-like protein55-1470Zea mays358PHE000002619rice GRF1193-1380Oryza sativa359PHE000022720soy omega-3 fatty acid138-1496Glycine maxdesaturase360PHE000025821AtFAD7132-1472Arabidopsis thaliana361PHE000025922AtFAD861-1368Arabidopsis thaliana362PHE000004923rice phyA with corn phyC4626-6690, 6913-7729, 8011-8307,Oryza sativaintron 18410-8617363PHE000002724sorghum phyA with corn238-3633Sorghum bicolorphyC intron 1364PHE000002825rice phyB with corn phyC67-3582Oryza sativaintron 1365PHE000002926sorghum phyB with corn429-2640, 3333-4140, 5819-6112,Sorghum bicolorphyC intron 17491-7713366PHE000003027rice phyC with corn phyC1036-3100, 3205-4021, 4418-4711,Oryza sativaintron 15272-5509367PHE000003128sorghum phyC with corn303-3710Sorghum bicolorphyC intron 1368PHE000003229rice PF135-676Oryza sativa369PHE000003330rice GT258-2271Oryza sativa370PHE000003431Synechocystis biliverdin9-992Synechocystis sp.reductasePCC 6803371PHE000003832corn cycD2.1125-1156Zea mays372PHE000003933corn nph1415-3150Zea mays373PHE000004034corn hemoglobin 1172-669Zea mays374PHE000004335rice cyclin 2148-1407Oryza sativa375PHE000004436rice cycC97-870Oryza sativa376PHE000004537rice cycB274-1336Oryza sativa377PHE000004638rice cycA197-1623Oryza sativa378PHE000004739rice cycB5292-361, 1019-1347, 1447-1572,Oryza sativa1657-1908, 2059-2217,2315-2493, 3276-3432379PHE000024440corn SVP-like177-860Zea mays380PHE000024541corn SVP-like93-791Zea mays381PHE000024642soy SVP-like96-713Glycine max382PHE000024743soy jointless-like60-674Glycine max383PHE000010644corn cycA1107-1633Zea mays384PHE000005045corn cycA2107-1222Zea mays385PHE000005146corn cycB2137-1408Zea mays386PHE000005247corn cycB582-1518Zea mays387PHE000038248LIB3279-180-C9_FLI-114-1385Zea maysmaize cyclin III388PHE000005349corn cycB4254-1579Zea mays389PHE000005450corn cycD3.2220-1380Zea mays390PHE000005551corn cycDx.1218-1180Zea mays391PHE000005652corn cycD1.1288-1334Zea mays392PHE000005753corn mt NDK-60-725Zea maysLIB189022Q1E1E9393PHE000005854corn cp NDK-103-816Zea mays700479629394PHE000005955corn NDK-49-495Zea maysLIB3597020Q1K6C3395PHE000006056corn NDK-700241377162-608Zea mays396PHE000006257sRAD54-with NLS437-3556Synechocystis sp.PCC 6803397PHE000006358T4 endonuclease VII603-1148coliphage T4(gp49)-with NLS398PHE000006459corn NDPK-fC-91-624Zea mayszmemLIB3957015Q1K6H6399PHE000006560TOR1302-7714Saccharomycescerevisiae400PHE000029261corn eIF-5A85-564Zea mays401PHE000006762yeast eIF-5A569-1042Saccharomycescerevisiae402PHE000006863yeast deoxyhypusine173-1336Saccharomycessynthasecerevisiae403PHE000006964yeast L5987-1880Saccharomycescerevisiae404PHE000007065yeast ornithine576-1976Saccharomycesdecarboxylasecerevisiae405PHE000007166rice exportin 4-like501-750, 1257-1417, 1735-1800,Oryza sativa3104-3218, 3318-3427,3525-3620, 7587-7744,7828-7915, 8565-8669,8774-8878, 9421-9450,9544-9656, 9732-9819,9961-10180, 11034-11164,12058-12204, 12770-12898,12975-13073, 13221-13259,14674-14823406PHE000007267yeast S-415-1605Saccharomycesadenosylmethioninecerevisiaedecarboxylase407PHE000007368corn S-268-1365Zea maysadenosylmethioninedecarboxylase 1408PHE000007469corn S-581-1780Zea maysadenosylmethioninedecarboxylase 2409PHE000007570retinoblastoma-related37-2634Zea maysprotein 1410PHE000007671C1 protein49-843Wheat dwarf virus411PHE000007772yeast flavohemoglobin-1695-2894Saccharomycesmitochondrialcerevisiae412PHE000000973Arabidopsis G97558-654Arabidopsis thaliana413PHE000007974CUT1372-1082, 1176-1946Oryza sativa414PHE000008275corn cycB388-1425Zea mays415PHE000008376PDR51552-6087Saccharomycescerevisiae416PHE000008477rice cyclin H235-1227Oryza sativa417PHE000008578rice cdc2+/CDC28-173-1447Oryza sativarelated protein kinase418PHE000008679Cdk-activating kinase 114-1240Glycine max419PHE000008980CHL185-1857Arabidopsis thaliana420PHE000009081NTR1144-1898Oryza sativa421PHE000009182Zm SET domain 2101-1009Zea mays422PHE000009283Zm SET domain 1528-1544Zea mays423PHE000009584HSF11017-3518Saccharomycescerevisiae424PHE000009685Zm HSP101436-1773, 1878-2159, 2281-2621,Zea mays2711-2990, 3079-3276,3371-3670425PHE000009886E. coli clpB557-3130Escherichia coli426PHE000009987Synechocystis clpB316-2931Synechocystis sp.PCC 6803427PHE000010088Xylella clpB187-2769Xylella fastidiosa428PHE000010189corn cycD3.1250-1422Zea mays429PHE000010290AnFPPS (farnesyl-146-1186Emericella nidulanspyrophosphatesynthetase)430PHE000010391OsFPPS42-1103Oryza sativa431PHE000010492700331819_FLI-corn313-1377Zea maysFPPS 2432PHE000010593corn cycD1.2229-1275Zea mays433PHE000010794corn cycD1.3206-1252Zea mays434PHE000010895ASH161-801Arabidopsis thaliana435PHE000010996rice ASH1-like1136-1008Oryza sativa436PHE000011097rice MtN2-like425-464, 546-582, 672-783,Oryza sativa812-898, 988-1149, 1556-1675,1776-1952437PHE000011198PAS domain kinase358-2613Zea mays438PHE000011499Su(var) 3-9-like71-814Zea mays439PHE0000115100Receiver domain (RR3-277-1002Zea mayslike) 7440PHE0000116101Receiver domain188-2245Zea mays(ARR2-like) 1441PHE0000117102Receiver domain (TOC1-112-2238Zea mayslike) 2442PHE0000118103Receiver domain (TOC1-84-1976Zea mayslike) 3443PHE0000119104Receiver domain (ARR2-39-1931Zea mayslike) 4444PHE0000120105Receiver domain (RR11-61-1812Zea mayslike) 5445PHE0000121106Receiver domain (RR3-391-1116Zea mayslike) 6446PHE0000122107Receiver domain (RR3-335-1066Zea mayslike) 8447PHE0000123108Receiver domain 955-759Zea mays448PHE0000124109ZmRR2154-624Zea mays449PHE0000125110Receiver domain (TOC1-374-722, 791-2019Zea mayslike) 10450PHE0000126111corn HY5-like32-541Zea mays451PHE0000127112scarecrow 1 (PAT1-like)295-1929Zea mays452PHE0000128113scarecrow 2153-1934Zea mays453PHE0000133114G protein b subunit90-1229Zea mays454PHE000015211514-3-3-like protein 285-861Glycine max455PHE000015311614-3-3-like protein D42-824Glycine max456PHE000015411714-3-3 protein 149-834Glycine max457PHE0000155118Rice FAP1-like protein654-1862, 2310-2426, 3407-3492,Oryza sativa3590-3752, 3845-3890,4476-4522, 4985-5191,5306-5392, 5473-5640458PHE0000156119rice TAP42-like199-1338Oryza sativa459PHE0000158120BMH179-882Saccharomycescerevisiae460PHE0000159121rice chloroplastic41-1261Oryza sativafructose-1,6-bisphosphatase461PHE0000160122E. coli fructose-1,6-208-1206Escherichia colibisphosphatase462PHE0000161123Synechocystis fructose-1-1164Synechocystis sp.1,6-bisphosphatase F-IPCC 6803463PHE0000162124Synechocystis fructose-480-1523Synechocystis sp.1,6-bisphosphatase F-IIPCC 6803464PHE0000164125Yeast RPT5883-2187Saccharomycescerevisiae465PHE0000165126Yeast RRP5331-5520Saccharomycescerevisiae466PHE0000166127Rice CBP-like gene277-436, 479-1524, 1790-2065,Oryza sativa2150-2425, 3134-3262,3380-3580, 3683-3825,3905-4190, 4294-4433,4711-4789, 4874-4929,5754-5946467PHE0000167128rice BAB09754616-903, 1848-1940, 2046-2165,Oryza sativa2254-2355, 2443-2693,2849-2994, 3165-3363,3475-4141, 4438-4770,5028-5309468PHE0000168129LIB3061-001-H7_FLI309-1037Zea mays469PHE0000169130maize p23106-708Zea mays470PHE0000170131maize cyclophilin99-1757Zea mays471PHE0000172132yeast SIT1361-2130Saccharomycescerevisiae472PHE0000173133yeast CNS1762-1919Saccharomycescerevisiae473PHE0000176134RNAse S85-771Zea mays474PHE0000177135maize ecto-apyrase210-2312Zea mays475PHE0000178136PHO51-1404Saccharomycescerevisiae476PHE0000179137high affinity phosphate105-1703Glycine maxtranslocator477PHE0000180138high affinity phosphate128-1750Zea maystranslocator478PHE0000181139Xylella citrate synthase256-1545Xylella fastidiosa479PHE0000182140E. coli citrate synthase309-1592Escherichia coli480PHE0000183141rice citrate synthase105-1523Oryza sativa481PHE0000184142citrate synthase56-1564Zea mays482PHE0000185143citrate synthase153-1691Glycine max483PHE0000186144maize ferritin 23-758Zea mays484PHE0000187145maize ferritin 134-795Zea mays485PHE0000188146E. coli cytoplasmic245-742Escherichia coliferritin486PHE0000190147corn LEA3171-755Zea mays487PHE0000192148soy HSF23-1114Glycine max488PHE0000193149soy HSF93-992Glycine max489PHE0000204150deoxyhypusine synthase26-1129Glycine max490PHE0000219151thylakoid carbonic62-994Chlamydomonasanhydrase, cah3reinhardtii491PHE0000216152thylakoid carbonic49-843Nostoc PCC7120anhydrase, ecaA492PHE0000217153Chlamydomonas156-1232Chlamydomonasreinhardtii envelopereinhardtiiprotein LIP-36G1493PHE0000218154psbO transit271-1674Synechococcus sp.peptide:: SynechococcusPCC 7942sp. PCC 7942 ictB494PHE0000220155corn RNase PH86-805Zea mays495PHE0000221156SKI21351-5211Saccharomycescerevisiae496PHE0000222157SKI3793-5091Saccharomycescerevisiae497PHE0000223158SKI4323-1201Saccharomycescerevisiae498PHE0000224159SKI61007-1747Saccharomycescerevisiae499PHE0000225160SKI7279-2519Saccharomycescerevisiae500PHE0000226161rice SKI7-like464-884, 1132-1287, 2103-2252,Oryza sativa2353-2487, 2957-3288,3399-3509, 3596-4095,4350-4518, 4783-5022,5097-5228, 5315-5449501PHE0000228162Synechocystis cobA w cp70-801Synechocystis sp.transit peptidePCC 6803502PHE0000229163Xylella tetrapyrrole1-774Xylella fastidiosamethylase with transitpeptide503PHE0000230164maize uroporphyrinogen15-1286Zea maysIII methyltransferase504PHE0000231165nucellin-like protein122-1594Zea mays505PHE0000232166nucellin-like protein76-1605Zea mays506PHE0000233167nucellin-like protein195-1628Zea mays507PHE0000234168soy LEA protein6-704Glycine max508PHE0000235169dehydrin-like protein33-710Glycine max509PHE0000237170dehydrin 384-584Zea mays510PHE0000238171probable lipase98-967Zea mays511PHE0000239172yeast GRE11024-1527Saccharomycescerevisiae512PHE0000240173yeast STF2683-934Saccharomycescerevisiae513PHE0000241174yeast SIP18376-855Saccharomycescerevisiae514PHE0000242175yeast YBM6744-1130Saccharomycescerevisiae515PHE0000243176yeast HSP12282-611Saccharomycescerevisiae516PHE0000249177corn allene oxide111-1556Zea mayssynthase517PHE0000250178corn COI1-like139-1911Zea mays518PHE0000251179corn TIR1-like113-1906Zea mays519PHE0000252180corn COI1-like130-1923Zea mays520PHE0000253181COI1-like389-2368Zea mays521PHE0000254182F-box protein123-1304Glycine max522PHE0000255183F-box protein228-1916Glycine max523PHE0000256184corn 1-61-1011Zea maysaminocyclopropane-1-carboxylate oxidase524PHE0000257185rice 1-2-1465Oryza sativaaminocyclopropane-1carboxylate synthase525PHE0000260186S52650 - Synechocystis643-1719Synechocystis sp.desBPCC 6803526PHE0000261187yeast glutamate33-1790Saccharomycesdecarboxylasecerevisiae527PHE0000262188cytochrome P450-like29-1495Zea maysprotein528PHE0000263189cytochrome P450141-1637Zea mays529PHE0000264190cytochrome P450-like104-1657Zea mays530PHE0000265191CYP90 protein81-1589Zea mays531PHE0000266192cytochrome P45092-1648Zea maysDWARF3532PHE0000267193cytochrome P450134-1543Zea mays533PHE0000268194rice receptor protein183-476, 706-735, 2796-6734Oryza sativakinase534PHE0000269195soy E2F-like80-1117Glycine max535PHE0000270196nuclear matrix constituent243-3371Zea maysprotein536PHE0000271197OsE2F193-1403Oryza sativa537PHE0000272198corn GCR174-1036Zea mays538PHE0000273199soy mlo-like15-1532Glycine max539PHE0000274200soy mlo-like48-1841Glycine max540PHE0000275201rice G alpha 1106-1248Oryza sativa541PHE0000276202soy G-gamma subunit210-536Glycine max542PHE0000277203wheat G28-like65-877Triticum aestivum543PHE0000279204sorghum proline16-1341Sorghum bicolorpermease544PHE0000280205rice AA transporter61-1485Oryza sativa545PHE0000282206SET-domain protein-like478-3045Zea mays546PHE0000283207scarecrow 6520-2145Zea mays547PHE0000284208menage a trois-like164-745Zea mays548PHE0000286209Oryzacystatin108-527Oryza sativa549PHE0000287210Similar to cysteine18-767Oryza sativaproteinase inhibitor550PHE0000288211cysteine proteinase135-461Sorghum bicolorinhibitor551PHE0000289212Zm-GRF1 (GA96-1202Zea maysresponsive factor)552PHE0000290213ZmSE001-like253-2115Zea mays553PHE0000291214deoxyhypusine synthase54-1163Zea mays554PHE0000293215gibberellin response131-2020Zea maysmodulator555PHE0000294216scarecrow-like protein266-1948Zea mays556PHE0000295217ubiquitin-conjugating114-599Zea maysenzyme-like protein557PHE0000296218unknown protein90-785Zea maysrecognized by PF01169558PHE000029721926S protease regulatory57-1343Oryza sativasubunit 6A homolog559PHE0000298220rice p23 co-chaperone68-706Oryza sativa560PHE0000299221corn p23 co-chaperone71-565Zea mays561PHE0000300222rice p23 co-chaperone124-642Oryza sativa562PHE0000301223corn p23 co-chaperone90-617Zea mays563PHE0000302224putative purple acid22-1038Oryza sativaphosphatase precursor564PHE0000303225acid phosphatase type 5143-1186Zea mays565PHE0000304226aleurone ribonuclease47-814Oryza sativa566PHE0000305227putative ribonuclease55-888Zea mays567PHE0000306228S-like RNase15-770Zea mays568PHE0000307229ribonuclease95-781Zea mays569PHE0000308230helix-loop-helix protein202-756Zea mays(PIF3-like)570PHE0000309231SKI4-like protein36-632Zea mays571PHE0000310232putative 3238-1098Zea maysexoribonuclease572PHE0000311233GF14-c protein81-848Oryza sativa573PHE000031223414-3-3-like protein6-785Oryza sativa574PHE0000313235rice eIF-(iso)4F96-713Oryza sativa575PHE0000314236rice eIF-4F46-726Oryza sativa576PHE0000315237sorghum eIF-(iso)4F78-707Sorghum bicolor577PHE0000316238sorghum eIF-4F9-668Sorghum bicolor578PHE0000317239rice FIP37-like73-1128Oryza sativa579PHE0000318240scarecrow 17441-2102Zea mays580PHE0000322241maize catalase-1208-1683Zea mays581PHE0000323242maize catalase-330-1511Zea mays582PHE0000324243ascorbate peroxidase197-1063Zea mays583PHE0000325244corn GDI57-1397Zea mays584PHE0000326245soy GDI45-1418Glycine max585PHE0000327246corn rho GDI463-1203Zea mays586PHE0000328247basic blue copper protein13-408Zea mays587PHE0000329248plantacyanin109-489Zea mays588PHE0000330249basic blue copper protein83-463Glycine max589PHE0000331250Similar to blue copper323-868Zea maysprotein precursor590PHE0000332251lamin62-646Zea mays591PHE0000333252fC-zmfl700551169a-allyl56-1105Zea maysalcohol dehydrogenase592PHE0000334253allyl alcohol103-1128Glycine maxdehydrogenase593PHE0000335254allyl alcohol6-1079Zea maysdehydrogenase594PHE0000336255quinone oxidoreductase47-1051Zea mays595PHE0000337256E. nidulans cysA-384-1961Emericella nidulansAF029885596PHE0000338257BAA18167-801-1547Synechocystis sp.Synechocystis cysEPCC 6803597PHE0000339258Synechocystis thiol-36-638Synechocystis sp.specific antioxidantPCC 6803protein-BAA10136598PHE0000340259yeast TSA2-NP_010741108-698Saccharomycescerevisiae599PHE0000341260yeast mTPx-Z35825730-1512Saccharomycescerevisiae600PHE0000343261yeast TPx III-657-1187SaccharomycesNP_013210cerevisiae601PHE0000345262soy putative 2-cys160-939Glycine maxperoxiredoxin602PHE0000346263soy peroxiredoxin104-745Glycine max603PHE0000347264heat shock protein 26,117-836Zea maysplastid-localized604PHE0000349265heat shock protein112-735Zea mays605PHE0000350266low molecular weight28-690Zea maysheat shock protein606PHE000035126718 kDa heat shock protein103-597Zea mays607PHE0000352268heat shock protein 16.9229-690Zea mays608PHE0000353269HSP21-like protein73-696Zea mays609PHE0000354270Opt1p-NP_012323508-2904Saccharomycescerevisiae610PHE0000355271SVCT2-like permease220-1779Zea mays611PHE0000356272SVCT2-like permease34-1632Zea mays612PHE0000357273maize tubby-like519-1958Zea mays613PHE0000358274maize tubby-like517-1269Zea mays614PHE0000359275soy HMG CoA synthase80-1441Glycine max615PHE0000360276yeast HMGS-X96617220-1695Saccharomycescerevisiae616PHE0000361277PAT1-like scarecrow 9191-1900Zea mays617PHE0000362278CDC28-related protein198-1484Zea mayskinase618PHE0000385279H+ transporting ATPase176-2836Zea mays619PHE0000386280cation-transporting222-2168Zea maysATPase620PHE0000387281yeast DRS2 (ALA1-like)-170-4237SaccharomycesL01795cerevisiae621PHE0000388282S. pombe ALA1-like-56-3832SchizosaccharomycesCAA21897pombe622PHE0000389283rice ALA1-like 1-47-1538, 1619-1925, 3116-3824,Oryza sativaBAA895443920-4043, 4143-4362,4590-5048, 5937-6153623PHE0000390284rice chloroplastic136-1311Oryza sativasedoheptulose-1,7-bisphosphatase-624PHE0000391285rice cytosolic fructose-171-1187Oryza sativa1,6-bisphosphatase625PHE0000392286Wheat sedoheptulose-1,7-14-1192Triticum aestivumbisphosphatase626PHE0000394287sedoheptulose-1,7-90-1238Chlorella sorokinianabisphosphatase627PHE0000395288soy phantastica275-1345Glycine max628PHE0000396289soy phantastica 2178-1260Glycine max629PHE0000397290maize rough sheath 192-1144Zea mays630PHE0000398291soy Ig3-like 1103-1026Glycine max631PHE0000399292soy rough sheath1-like 1144-1076Glycine max632PHE0000400293soy G559-like301-1560Glycine max633PHE0000401294soy G1635-like 128-888Glycine max634PHE0000402295rice amino acid89-1426Oryza sativatransporter-like protein635PHE0000403296corn amino acid permease116-1453Zea mays636PHE0000404297rice proline transport313-1731Oryza sativaprotein637PHE0000412298corn monosaccharide75-1643Zea maystransporter 1638PHE0000413299soy monosaccharide132-1685Glycine maxtransporter 3639PHE0000414300corn monosaccharide141-1670Zea maystransporter 3640PHE0000415301soy monosaccharide160-1899Glycine maxtransporter 1641PHE0000416302corn monosaccharide74-1690Zea maystransporter 6642PHE0000418303corn monosaccharide146-1744Zea maystransporter 4643PHE0000419304soy monosaccharide63-1505Glycine maxtransporter 2644PHE0000420305soy sucrose transporter63-1595Glycine max645PHE0000421306corn sucrose transporter 276-1599Zea mays646PHE0000422307corn monosaccharide201-1763Zea maystransporter 8647PHE0000423308corn monosaccharide93-1634Zea maystransporter 7648PHE0000425309soy isoflavone synthase45-1607Glycine max649PHE0000426310soy ttg1-like 252-1059Glycine max650PHE0000427311GATE5-corn SPA1-like 1227-3139Zea mays651PHE0000428312corn PIF3-like173-856Zea mays652PHE0000429313soy Athb-2-like 178-932Glycine max653PHE0000430314corn SUB1-like 144-1954Zea mays654PHE0000431315soy GH3 protein42-1820Glycine max655PHE0000432316corn 12-128-1240Zea maysoxophytodienoatereductase 1656PHE0000433317corn 12-oxo-166-1242Zea maysphytodienoate reductase-like 3657PHE0000434318corn 12-92-1210Zea maysoxophytodienoatereductase-like 4658PHE0000435319corn hydroperoxide lyase83-1594Zea mays659PHE0000436320rice cns1-like121-1242Oryza sativa660PHE0000437321corn HCH1-like 142-1100Zea mays661PHE0000438322corn HOP-like 188-1830Zea mays662PHE0000439323corn HOP-like 265-1261Zea mays663PHE0000440324rice CHIP-like 1121-939Oryza sativa664PHE0000441325corn CHIP-like 2115-939Zea mays665PHE0000451326wheat SVP-like 1149-736Triticum aestivum666PHE0000452327corn SVP-like 375-749Zea mays667PHE0000453328corn SVP-like 5304-774, 956-1219Zea mays668PHE0000454329fC-zmhuLIB3062-044-113-853Zea maysQ1-K1-B8669PHE0000455330corn E4/E8 binding253-2259Zea maysprotein-like670PHE0000469331yeast YKL091c-Z28091110-1042Saccharomycescerevisiae671PHE0000470332corn Ssh1-like protein 157-1037Zea mays672PHE0000471333corn Ssh1-like protein 389-841Zea mays673PHE0000472334corn Ssh1-like protein 4309-1196Zea mays674PHE0000473335soy Ssh1-like protein 2209-976Glycine max[ssh2]675PHE0000484336soy JMT-like protien 126-1135Glycine max676PHE0000485337corn JMT-like protein 139-1184Zea mays677PHE0000486338corn JMT-like protein 263-1208Zea mays678PHE0000017339corn AAA-ATPase 1184-2214Zea mays Selection Methods for Transgenic Plants with Enhanced Agronomic Trait Within a population of transgenic plants regenerated from plant cells transformed with the recombinant DNA many plants that survive to fertile transgenic plants that produce seeds and progeny plants will not exhibit an enhanced agronomic trait. Selection from the population is necessary to identify one or more transgenic plant cells that can provide plants with the enhanced trait. Transgenic plants having enhanced traits are selected from populations of plants regenerated or derived from plant cells transformed as described herein by evaluating the plants in a variety of assays to detect an enhanced trait, e.g. enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil. These assays also may take many forms including, but not limited to, direct screening for the trait in a greenhouse or field trial or by screening for a surrogate trait. Such analyses can be directed to detecting changes in the chemical composition, biomass, physiological properties, morphology of the plant. Changes in chemical compositions such as nutritional composition of grain can be detected by analysis of the seed composition and content of protein, free amino acids, oil, free fatty acids, starch or tocopherols. Changes in biomass characteristics can be made on greenhouse or field grown plants and can include plant height, stem diameter, root and shoot dry weights; and, for corn plants, ear length and diameter. Changes in physiological properties can be identified by evaluating responses to stress conditions, for example assays using imposed stress conditions such as water deficit, nitrogen deficiency, cold growing conditions, pathogen or insect attack or light deficiency, or increased plant density. Changes in morphology can be measured by visual observation of tendency of a transformed plant with an enhanced agronomic trait to also appear to be a normal plant as compared to changes toward bushy, taller, thicker, narrower leaves, striped leaves, knotted trait, chlorosis, albino, anthocyanin production, or altered tassels, ears or roots. Other selection properties include days to pollen shed, days to silking, leaf extension rate, chlorophyll content, leaf temperature, stand, seedling vigor, internode length, plant height, leaf number, leaf area, tillering, brace roots, stay green, stalk lodging, root lodging, plant health, barreness/prolificacy, green snap, and pest resistance. In addition, phenotypic characteristics of harvested grain may be evaluated, including number of kernels per row on the ear, number of rows of kernels on the ear, kernel abortion, kernel weight, kernel size, kernel density and physical grain quality. Although the plant cells and methods of this invention can be applied to any plant cell, plant, seed or pollen, e.g. any fruit, vegetable, grass, tree or ornamental plant, the various aspects of the invention are preferably applied to corn, soybean, cotton, canola, alfalfa, wheat and rice plants. The following examples are included to demonstrate aspects of the invention, those of skill in the art should, in light of the present disclosure, appreciate that many changes can be made in the specific aspects which are disclosed and still obtain a like or similar results without departing from the spirit and scope of the invention. EXAMPLES Example 1 Plant Expression Constructs This example illustrates the construction of plasmids for transferring recombinant DNA into plant cells which can be regenerated into transgenic plants of this invention A. Plant Expression Constructs for Corn Transformation A GATEWAY™ Destination (Invitrogen Life Technologies, Carlsbad, Calif.) plant expression vector, pMON65154, is constructed for use in preparation of constructs comprising recombinant polynucleotides for corn transformation. The elements of the expression vector are summarized in Table 3 below. Generally, pMON65154 comprises a selectable marker expression cassette comprising a Cauliflower Mosaic Virus 35S promoter operably linked to a gene encoding neomycin phosphotransferase II (nptII). The 3′ region of the selectable marker expression cassette comprises the 3′ region of the Agrobacterium tumefaciense nopaline synthase gene (nos) followed 3′ by the 3′ region of the potato proteinase inhibitor II (pinII) gene. The plasmid pMON 65154 further comprises a plant expression cassette into which a gene of interest may be inserted using GATEWAY™ cloning methods. The GATEWAY™ cloning cassette is flanked 5′ by a rice actin 1 promoter, exon and intron and flanked 3′ by the 3′ region of the potato pinII gene. Using GATEWAY™ methods, the cloning cassette may be replaced with a gene of interest. The vector pMON65154, and derivatives thereof comprising a gene of interest, are particularly useful in methods of plant transformation via direct DNA delivery, such as microprojectile bombardment. TABLE 3Elements of Plasmid pMON65154FUNCTIONELEMENTREFERENCEPlant gene of interestRice actin 1 promoterU.S. Pat. No. 5,641,876expression cassetteRice actin 1 exon 1, intron 1U.S. Pat. No. 5,641,876enhancerGene of interest insertionAttR1GATEWAY ™ Cloning TechnologysiteInstruction ManualCmR geneGATEWAY ™ Cloning TechnologyInstruction ManualccdA, ccdB genesGATEWAY ™ Cloning TechnologyInstruction ManualattR2GATEWAY ™ Cloning TechnologyInstruction ManualPlant gene of interestPotato pinII 3′ regionAn et al. (1989) Plant Cell 1: 115-122expression cassettePlant selectable markerCaMV 35S promoterU.S. Pat. No. 5,858,742expression cassettenptII selectable markerU.S. Pat. No. 5,858,742nos 3′ regionU.S. Pat. No. 5,858,742PinII 3′ regionAn et al. (1989) Plant Cell 1: 115-122Maintenance in E. coliColE1 origin of replicationF1 origin of replicationBla ampicillin resistance A similar plasmid vector, pMON72472, is constructed for use in Agrobacterium mediated methods of plant transformation. pMON72472 comprises the gene of interest plant expression cassette, GATEWAY™ cloning, and plant selectable marker expression cassettes present in pMON65154. In addition, left and right T-DNA border sequences from Agrobacterium are added to the plasmid (Zambryski et al. (1982)). The right border sequence is located 5′ to the rice actin 1 promoter and the left border sequence is located 3′ to the pinII 3′ sequence situated 3′ to the nptII gene. Furthermore, pMON72472 comprises a plasmid backbone to facilitate replication of the plasmid in both E. coli and Agrobacterium tumefaciens . The backbone has an oriV wide host range origin of DNA replication functional in Agrobacterium , a pBR322 origin of replication functional in E. coli , and a spectinomycin/stretptomycin resistance gene for selection in both E. coli and Agrobacterium. Vectors similar to those described above may be constructed for use in Agrobacterium or microprojectile bombardment maize transformation systems where the rice actin 1 promoter in the plant expression cassette portion is replaced with other desirable promoters including, but not limited to a corn globulin 1 promoter, a maize oleosin promoter, a glutelin I promoter, an aldolase promoter, a zein Z27 promoter, a pyruvate orthophosphate dikinase (PPDK) promoter, a a soybean 7S alpha promoter, a peroxiredoxin antioxidant (Perl) promoter and a CaMV 35S promoter. Protein coding segments are amplified by PCR prior to insertion into vectors such as described above. Primers for PCR amplification can be designed at or near the start and stop codons of the coding sequence, in order to eliminate most of the 5′ and 3′ untranslated regions. For GATEWAY cloning methods, PCR products are tailed with attB1 and attB2 sequences, purified then recombined into a destination vectors to produce an expression vector for use in transformation. Another base corn plant transformation vector pMON93039, as set forth in SEQ ID NO: 24150, illustrated in Table 4 and FIG. 2 , was fabricated for use in preparing recombinant DNA for Agrobacterium -mediated transformation into corn tissue. TABLE 4Coordinates of SEQfunctionNameAnnotationID NO: 24150AgrobacteriumB-AGRtu.right borderAgro right border sequence,11364-11720T-DNA transferessential for transfer of T-DNA.Gene of interestE-Os.Act1upstream promoter region of19-775expressionthe rice actin 1 genecassetteE-CaMV.35S.2xA1-B3duplicated35S A1-B3788-1120domain without TATA boxP-Os.Act1promoter region of the rice1125-1204actin 1 geneL-Ta.Lhcb15′ untranslated leader of1210-1270wheat major chlorophyll a/bbinding proteinI-Os.Act1first intron and flanking1287-1766UTR exon sequences fromthe rice actin 1 geneT-St.Pis43′ non-translated region of1838-2780the potato proteinaseinhibitor II gene whichfunctions to directpolyadenylation of themRNAPlant selectableP-Os.Act1Promoter from the rice actin2830-3670marker1 geneexpressionL-Os.Act1first exon of the rice actin 13671-3750cassettegeneI-Os.Act1first intron and flanking3751-4228UTR exon sequences fromthe rice actin 1 geneTS-At.ShkG-CTP2Transit peptide region of4238-4465Arabidopsis EPSPSCR-AGRtu.aroA-CP4.natCoding region for bacterial4466-5833strain CP4 native aroA gene.T-AGRtu.nosA 3′ non-translated region of5849-6101the nopaline synthase geneof Agrobacteriumtumefaciens Ti plasmidwhich functions to directpolyadenylation of themRNA.AgrobacteriumB-AGRtu.left borderAgro left border sequence,6168-6609T-DNA transferessential for transfer of T-DNA.Maintenance inOR-Ec.oriV-RK2The vegetative origin of6696-7092E. colireplication from plasmidRK2.CR-Ec.ropCoding region for repressor8601-8792of primer from the ColE1plasmid. Expression of thisgene product interferes withprimer binding at the originof replication, keepingplasmid copy number low.OR-Ec.ori-ColE1The minimal origin of9220-9808replication from the E. coliplasmid ColE1.P-Ec.aadA-SPC/STRromoter for Tn710339-10380adenylyltransferase(AAD(3″))CR-Ec.aadA-SPC/STRCoding region for Tn710381-11169adenylyltransferase(AAD(3″)) conferringspectinomycin andstreptomycin resistance.T-Ec.aadA-SPC/STR3′ UTR from the Tn711170-11227adenylyltransferase(AAD(3″)) gene of E. coli . B. Plant Expression Constructs for Soy and Canola Transformation Plasmids for use in transformation of soybean and canola were also prepared. Elements of an exemplary common expression vector pMON82053 are shown in Table 5 below and FIG. 3 . TABLE 5Coordinates ofFunctionNameAnnotationSEQ ID NO: 24151Agrobacterium T-B-AGRtu.left borderAgro left border sequence, essential for6144-6585DNA transfertransfer of T-DNA.Plant selectableP-At.Act7Promoter from the Arabidopsis actin 7 gene6624-7861marker expressionL-At.Act75′UTR of Arabidopsis Act7 genecassetteI-At.Act7Intron from the Arabidopsis actin7 geneTS-At.ShkG-CTP2Transit peptide region of Arabidopsis7864-8091EPSPSCR-AGRtu.aroA-Synthetic CP4 coding region with dicot8092-9459CP4.nno_Atpreferred codon usage.T-AGRtu.nosA 3′ non-translated region of the nopaline9466-9718synthase gene of Agrobacteriumtumefaciens Ti plasmid which functions todirect polyadenylation of the mRNA.Gene of interestP-CaMV.35S-enhPromoter for 35S RNA from CaMV1-613expression cassettecontaining a duplication of the −90 to −350region.T-Gb.E6-3b3′ untranslated region from the fiber protein688-1002E6 gene of sea-island cotton.Agrobacterium T-B-AGRtu.rightAgro right border sequence, essential for1033-1389DNA transferbordertransfer of T-DNA.Maintenance in E. coliOR-Ec.oriV-RK2The vegetative origin of replication from5661-6057plasmid RK2.CR-Ec.ropCoding region for repressor of primer from3961-4152the ColE1 plasmid. Expression of this geneproduct interferes with primer binding at theorigin of replication, keeping plasmid copynumber low.OR-Ec.ori-ColE1The minimal origin of replication from the2945-3533E. coli plasmid ColE1.P-Ec.aadA-SPC/STRPromoter for Tn7 adenylyltransferase2373-2414(AAD(3″))CR-Ec.aadA-Coding region for Tn7 adenylyltransferase1584-2372SPC/STR(AAD(3″)) conferring spectinomycin andstreptomycin resistance.T-Ec.aadA-SPC/STR3′ UTR from the Tn7 adenylyltransferase1526-1583(AAD(3″)) gene of E. coli . Primers for PCR amplification of protein coding nucleotides of recombinant DNA are designed at or near the start and stop codons of the coding sequence, in order to eliminate most of the 5′ and 3′ untranslated regions. Each recombinant DNA coding for a protein identified in Table 2 is amplified by PCR prior to insertion into the insertion site within the gene of interest expression cassette of one of the base vectors. Vectors similar to that described above may be constructed for use in Agrobacterium mediated soybean transformation systems where the enhanced 35S promoter in the plant expression cassette portion is replaced with other desirable promoters including, but not limited to a napin promoter and an Arabidopsis SSU promoter. Protein coding segments are amplified by PCR prior to insertion into vectors such as described above. Primers for PCR amplification can be designed at or near the start and stop codons of the coding sequence, in order to eliminate most of the 5′ and 3′ untranslated regions. C. Cotton Transformation Vector Plasmids for use in transformation of cotton are also prepared. Elements of an exemplary common expression vector plasmid pMON99053 are shown in Table 6 below and FIG. 4 . Primers for PCR amplification of protein coding nucleotides of recombinant DNA are designed at or near the start and stop codons of the coding sequence, in order to eliminate most of the 5′ and 3′ untranslated regions. Each recombinant DNA coding for a protein identified in Table 2 is amplified by PCR prior to insertion into the insertion site within the gene of interest expression cassette of one of the base vectors. TABLE 6Coordinates ofSEQ ID NO:functionNameannotation24152AgrobacteriumB-AGRtu.right borderAgro right border sequence,11364-11720T-DNA transferessential for transfer of T-DNA.Gene of interestExp-CaMV.35S-Enhanced version of the 35S7794-8497expressionenh+ph.DnaKRNA promoter from CaMV pluscassettethe petunia hsp70 5′ untranslatedregionT-Ps.RbcS2-E9The 3′ non-translated region of67-699the pea RbcS2 gene whichfunctions to directpolyadenylation of the mRNA.Plant selectableExp-CaMV.35SPromoter from the rice actin 1730-1053markergeneexpressionCR-Ec.nptII-Tn5first exon of the rice actin 1 gene1087-1881cassetteT-AGRtu.nosA 3′ non-translated region of the1913-2165nopaline synthase gene ofAgrobacterium tumefaciens Tiplasmid which functions todirect polyadenylation of themRNA.AgrobacteriumB-AGRtu.left borderAgro left border sequence,2211-2652T-DNA transferessential for transfer of T-DNA.Maintenance inOR-Ec.oriV-RK2The vegetative origin of2739-3135E. colireplication from plasmid RK2.CR-Ec.ropCoding region for repressor of4644-4835primer from the ColE1 plasmid.Expression of this gene productinterferes with primer binding atthe origin of replication, keepingplasmid copy number low.OR-Ec.ori-ColE1The minimal origin of5263-5851replication from the E. coliplasmid ColE1.P-Ec.aadA-SPC/STRromoter for Tn76382-6423adenylyltransferase (AAD(3″))CR-Ec.aadA-SPC/STRCoding region for Tn76424-7212adenylyltransferase (AAD(3″))conferring spectinomycin andstreptomycin resistance.T-Ec.aadA-SPC/STR3′ UTR from the Tn77213-7270adenylyltransferase (AAD(3″))gene of E. coli . Example 2 Corn Transformation This example illustrates plant cell transformation methods useful in producing transgenic corn plant cells, plants, seeds and pollen of this invention and the production and identification of transgenic corn plants and seed with an enhanced trait, i.e. enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil. Plasmid vectors were prepared by cloning DNA identified in Table 1 in the identified base vectors for use in corn transformation of corn plant cells to produce transgenic corn plants and progeny plants, seed and pollen. For Agrobacterium -mediated transformation of corn embryo cells corn plants of a readily transformable line (designated LH59) is grown in the greenhouse and ears harvested when the embryos are 1.5 to 2.0 mm in length. Ears are surface sterilized by spraying or soaking the ears in 80% ethanol, followed by air drying. Immature embryos are isolated from individual kernels on surface sterilized ears. Prior to inoculation of maize cells, Agrobacterium cells are grown overnight at room temperature. Immature maize embryo cells are inoculated with Agrobacterium shortly after excision, and incubated at room temperature with Agrobacterium for 5-20 minutes. Immature embryo plant cells are then co-cultured with Agrobacterium for 1 to 3 days at 23° C. in the dark. Co-cultured embryos are transferred to selection media and cultured for approximately two weeks to allow embryogenic callus to develop. Embryogenic callus is transferred to culture medium containing 100 mg/L paromomycin and subcultured at about two week intervals. Transformed plant cells are recovered 6 to 8 weeks after initiation of selection. For Agrobacterium -mediated transformation of maize callus immature embryos are cultured for approximately 8-21 days after excision to allow callus to develop. Callus is then incubated for about 30 minutes at room temperature with the Agrobacterium suspension, followed by removal of the liquid by aspiration. The callus and Agrobacterium are co-cultured without selection for 3-6 days followed by selection on paromomycin for approximately 6 weeks, with biweekly transfers to fresh media, and paromomycin resistant callus identified as containing the recombinant DNA in an expression cassette. For transformation by microprojectile bombardment immature maize embryos are isolated and cultured 3-4 days prior to bombardment. Prior to microprojectile bombardment, a suspension of gold particles is prepared onto which the desired recombinant DNA expression cassettes are precipitated. DNA is introduced into maize cells as described in U.S. Pat. Nos. 5,550,318 and 6,399,861 using the electric discharge particle acceleration gene delivery device. Following microprojectile bombardment, tissue is cultured in the dark at 27 degrees C. Additional transformation methods and materials for making transgenic plants of this invention, for example, various media and recipient target cells, transformation of immature embryos and subsequence regeneration of fertile transgenic plants are disclosed in U.S. Pat. Nos. 6,194,636 and 6,232,526 and U.S. patent application Ser. No. 09/757,089, which are incorporated herein by reference. To regenerate transgenic corn plants a callus of transgenic plant cells resulting from transformation is placed on media to initiate shoot development in plantlets which are transferred to potting soil for initial growth in a growth chamber at 26 degrees C. followed by a mist bench before transplanting to 5 inch pots where plants are grown to maturity. The regenerated plants are self fertilized and seed is harvested for use in one or more methods to select seed, seedlings or progeny second generation transgenic plants (R2 plants) or hybrids, e.g. by selecting transgenic plants exhibiting an enhanced trait as compared to a control plant. Transgenic corn plant cells are transformed with recombinant DNA from each of the genes identified in Table 2. Progeny transgenic plants and seed of the transformed plant cells are screened for enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil as reported in Example 5. Example 3 Soybean Transformation This example illustrates plant transformation useful in producing the transgenic soybean plants of this invention and the production and identification of transgenic seed for transgenic soybean having enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil. For Agrobacterium mediated transformation, soybean seeds are germinated overnight and the meristem explants excised. The meristems and the explants are placed in a wounding vessel. Soybean explants and induced Agrobacterium cells from a strain containing plasmid DNA with the gene of interest cassette and a plant selectable marker cassette are mixed no later than 14 hours from the time of initiation of seed germination and wounded using sonication. Following wounding, explants are placed in co-culture for 2-5 days at which point they are transferred to selection media for 6-8 weeks to allow selection and growth of transgenic shoots. Trait positive shoots are harvested approximately 6-8 weeks and placed into selective rooting media for 2-3 weeks. Shoots producing roots are transferred to the greenhouse and potted in soil. Shoots that remain healthy on selection, but do not produce roots are transferred to non-selective rooting media for an additional two weeks. Roots from any shoots that produce roots off selection are tested for expression of the plant selectable marker before they are transferred to the greenhouse and potted in soil. Additionally, a DNA construct can be transferred into the genome of a soybean cell by particle bombardment and the cell regenerated into a fertile soybean plant as described in U.S. Pat. No. 5,015,580, herein incorporated by reference. Transgenic soybean plant cells are transformed with recombinant DNA from each of the genes identified in Table 2. Progeny transgenic plants and seed of the transformed plant cells are screened for enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil as reported in Example 5. Example 4 Cotton Transgenic Plants with Enhanced Agronomic Traits Cotton transformation is performed as generally described in WO0036911 and in U.S. Pat. No. 5,846,797. Transgenic cotton plants containing each of the recombinant DNA having a sequence of SEQ ID NO: 1 through SEQ ID NO: 339 are obtained by transforming with recombinant DNA from each of the genes identified in Table 2. Progeny transgenic plants are selected from a population of transgenic cotton events under specified growing conditions and are compared with control cotton plants. Control cotton plants are substantially the same cotton genotype but without the recombinant DNA, for example, either a parental cotton plant of the same genotype that was not transformed with the identical recombinant DNA or a negative isoline of the transformed plant. Additionally, a commercial cotton cultivar adapted to the geographical region and cultivation conditions, i.e. cotton variety ST474, cotton variety FM 958, and cotton variety Siokra L-23, are used to compare the relative performance of the transgenic cotton plants containing the recombinant DNA. The specified culture conditions are growing a first set of transgenic and control plants under “wet” conditions, i.e. irrigated in the range of 85 to 100 percent of evapotranspiration to provide leaf water potential of −14 to −18 bars, and growing a second set of transgenic and control plants under “dry” conditions, i.e. irrigated in the range of 40 to 60 percent of evapotranspiration to provide a leaf water potential of −21 to −25 bars. Pest control, such as weed and insect control is applied equally to both wet and dry treatments as needed. Data gathered during the trial includes weather records throughout the growing season including detailed records of rainfall; soil characterization information; any herbicide or insecticide applications; any gross agronomic differences observed such as leaf morphology, branching habit, leaf color, time to flowering, and fruiting pattern; plant height at various points during the trial; stand density; node and fruit number including node above white flower and node above crack boll measurements; and visual wilt scoring. Cotton boll samples are taken and analyzed for lint fraction and fiber quality. The cotton is harvested at the normal harvest timeframe for the trial area. Enhanced water use efficiency is indicated by increased yield, improved relative water content, enhanced leaf water potential, increased biomass, enhanced leaf extension rates, and improved fiber parameters. The transgenic cotton plants of this invention are identified from among the transgenic cotton plants by agronomic trait screening as having increased yield and enhanced water use efficiency. Example 5 Canola Transformation This example illustrates plant transformation useful in producing the transgenic canola plants of this invention and the production and identification of transgenic seed for transgenic canola having enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil. Tissues from in vitro grown canola seedlings are prepared and inoculated with overnight-grown Agrobacterium cells containing plasmid DNA with the gene of interest cassette and a plant selectable marker cassette. Following co-cultivation with Agrobacterium , the infected tissues are allowed to grow on selection to promote growth of transgenic shoots, followed by growth of roots from the transgenic shoots. The selected plantlets are then transferred to the greenhouse and potted in soil. Molecular characterization are performed to confirm the presence of the gene of interest, and its expression in transgenic plants and progenies. Progeny transgenic plants are selected from a population of transgenic canola events under specified growing conditions and are compared with control canola plants. Control canola plants are substantially the same canola genotype but without the recombinant DNA, for example, either a parental canola plant of the same genotype that is not transformed with the identical recombinant DNA or a negative isoline of the transformed plant Transgenic canola plant cells are transformed with recombinant DNA from each of the genes identified in Table 2. Transgenic progeny plants and seed of the transformed plant cells are screened for enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil as reported in Example 7. Example 6 Homolog Identification This example illustrates the identification of homologs of proteins encoded by the DNA identified in Table 2 which is used to provide transgenic seed and plants having enhanced agronomic traits. From the sequence of the homologs, homologous DNA sequence can be identified for preparing additional transgenic seeds and plants of this invention with enhanced agronomic traits. An “All Protein Database” was constructed of known protein sequences using a proprietary sequence database and the National Center for Biotechnology Information (NCBI) non-redundant amino acid database (nr.aa). For each organism from which a polynucleotide sequence provided herein was obtained, an “Organism Protein Database” was constructed of known protein sequences of the organism; it is a subset of the All Protein Database based on the NCBI taxonomy ID for the organism. The All Protein Database was queried using amino acid sequences provided herein as SEQ ID NO: 340 through SEQ ID NO: 678 using NCBI “blastp” program with E-value cutoff of le-8. Up to 1000 top hits were kept, and separated by organism names. For each organism other than that of the query sequence, a list was kept for hits from the query organism itself with a more significant E-value than the best hit of the organism. The list contains likely duplicated genes of the polynucleotides provided herein, and is referred to as the Core List. Another list was kept for all the hits from each organism, sorted by E-value, and referred to as the Hit List. The Organism Protein Database was queried using polypeptide sequences provided herein as SEQ ID NO: 340 through SEQ ID NO: 678 using NCBI “blastp” program with E-value cutoff of 1e-4. Up to 1000 top hits were kept. A BLAST searchable database was constructed based on these hits, and is referred to as “SubDB”. SubDB was queried with each sequence in the Hit List using NCBI “blastp” program with E-value cutoff of 1e-8. The hit with the best E-value was compared with the Core List from the corresponding organism. The hit is deemed a likely ortholog if it belongs to the Core List, otherwise it is deemed not a likely ortholog and there is no further search of sequences in the Hit List for the same organism. Homologs from a large number of distinct organisms were identified and are reported by amino acid sequences of SEQ ID NO: 679 through SEQ ID NO: 24149. These relationship of proteins of SEQ ID NO: 340 through 678 and homologs of SEQ ID NO: 679 through 24149 is identified in Table 7. The source organism for each homolog is found in the Sequence Listing. Example 7 Selection of Transgenic Plants with Enhanced Agronomic Trait(s) This example illustrates identification of plant cells of the invention by screening derived plants and seeds for enhanced trait. Transgenic corn seed and plants with recombinant DNA identified in Table 2 are prepared by plant cells transformed with DNA that is stably integrated into the genome of the corn cell. Transgenic corn plant cells are transformed with recombinant DNA from each of the genes identified in Table 2. Progeny transgenic plants and seed of the transformed plant cells are screened for enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil as compared to control plants. A. Selection for Enhanced Nitrogen Use Efficiency The physiological efficacy of transgenic corn plants (tested as hybrids) can be tested for nitrogen use efficiency (NUE) traits in a high-throughput nitrogen (N) selection method. The collected data are compared to the measurements from wildtype controls using a statistical model to determine if the changes are due to the transgene. Raw data were analyzed by SAS software. Results shown herein are the comparison of transgenic plants relative to the wildtype controls. (1) Media Preparation for Planting a NUE Protocol Planting materials used: Metro Mix 200 (vendor: Hummert) Cat. # 10-0325, Scotts Micro Max Nutrients (vendor: Hummert) Cat. # 07-6330, OS 4⅓″×3⅞″ pots (vendor: Hummert) Cat. # 16-1415, OS trays (vendor: Hummert) Cat. # 16-1515, Hoagland's macronutrients solution, Plastic 5″ stakes (vendor: Hummert) yellow Cat. # 49-1569, white Cat. # 49-1505, Labels with numbers indicating material contained in pots. Fill 500 pots to rim with Metro Mix 200 to a weight of ˜140 g/pot. Pots are filled uniformly by using a balancer. Add 0.4 g of Micro Max nutrients to each pot. Stir ingredients with spatula to a depth of 3 inches while preventing material loss. (2) Planting a NUE Selection in the Greenhouse (a) Seed Germination—Each pot is lightly atered twice using reverse osmosis purified water. The first watering is scheduled to occur just before planting; and the second watering, after the seed has been planted in the pot. Ten Seeds of each entry (1 seed per pot) are planted to select eight healthy uniform seedlings. Additional wild type controls are planted for use as border rows. Alternatively, 15 seeds of each entry (1 seed per pot) are planted to select 12 healthy uniform seedlings (this larger number of plantings is used for the second, or confirmation, planting). Place pots on each of the 12 shelves in the Conviron growth chamber for seven days. This is done to allow more uniform germination and early seedling growth. The following growth chamber settings are 25° C./day and 22° C./night, 14 hours light and ten hours dark, humidity ˜80%, and light intensity ˜350 μmol/m 2 /S (at pot level). Watering is done via capillary matting similar to greenhouse benches with duration of ten minutes three times a day. (b) Seedling transfer—After seven days, the best eight or 12 seedlings for the first or confirmation pass runs, respectively, are chosen and transferred to greenhouse benches. The pots are spaced eight inches apart (center to center) and are positioned on the benches using the spacing patterns printed on the capillary matting. The Vattex matting creates a 384-position grid, randomizing all range, row combinations. Additional pots of controls are placed along the outside of the experimental block to reduce border effects. Plants are allowed to grow for 28 days under the low N run or for 23 days under the high N run. The macronutrients are dispensed in the form of a macronutrient solution (see composition below) containing precise amounts of N added (2mM NH 4 NO 3 for limiting N selection and 20 mM NH 4 NO 3 for high N selection runs). Each pot is manually dispensed 100 ml of nutrient solution three times a week on alternate days starting at eight and ten days after planting for high N and low N runs, respectively. On the day of nutrient application, two 20 min waterings at 05:00 and 13:00 are skipped. The vattex matting should be changed every third run to avoid N accumulation and buildup of root matter. Table 8 shows the amount of nutrients in the nutrient solution for either the low or high nitrogen selection. TABLE 82 mM NH 4 NO 320 mM NH 4 NO 3 (high(Low Nitrogen GrowthNitrogen GrowthCondition, Low N)Condition, High N)Nutrient StockmL/LmL/L1 M NH 4 N0 32201 M KH 2 PO 40.50.51 M MgSO 4 •7H 2 O221 M CaCl 22.52.51 M K 2 SO 411Note:Adjust pH to 5.6 with HCl or KOH (c) Harvest Measurements and Data Collection—After 28 days of plant growth for low N runs and 23 days of plant growth for high N runs, the following measurements are taken (phenocodes in parentheses): total shoot fresh mass (g) (SFM) measured by Sartorius electronic balance, V6 leaf chlorophyll measured by Minolta SPAD meter (relative units) (LC), V6 leaf area (cm 2 ) (LA) measured by a Li-Cor leaf area meter, V6 leaf fresh mass (g) (LFM) measured by Sartorius electronic balance, and V6 leaf dry mass (g) (LDM) measured by Sartorius electronic balance. Raw data were analyzed by SAS software. Results shown are the comparison of transgenic plants relative to the wildtype controls. To take a leaf reading, samples were excised from the V6 leaf. Since chlorophyll meter readings of corn leaves are affected by the part of the leaf and the position of the leaf on the plant that is sampled, SPAD meter readings were done on leaf six of the plants. Three measurements per leaf were taken, of which the first reading was taken from a point one-half the distance between the leaf tip and the collar and halfway from the leaf margin to the midrib while two were taken toward the leaf tip. The measurements were restricted in the area from ½ to ¾ of the total length of the leaf (from the base) with approximately equal spacing between them. The average of the three measurements was taken from the SPAD machine. Leaf fresh mass is recorded for an excised V6 leaf, the leaf is placed into a paper bag. The paper bags containing the leaves are then placed into a forced air oven at 80° C. for 3 days. After 3 days, the paper bags are removed from the oven and the leaf dry mass measurements are taken. From the collected data, two derived measurements are made: (1) Leaf chlorophyll area (LCA), which is a product of V6 relative chlorophyll content and its leaf area (relative units). Leaf chlorophyll area=leaf chlorophyll X leaf area. This parameter gives an indication of the spread of chlorophyll over the entire leaf area; (2) specific leaf area (LSA) is calculated as the ratio of V6 leaf area to its dry mass (cm 2 /g dry mass), a parameter also recognized as a measure of NUE. A list of recombinant DNA constructs which improved growth in high nitrogen in transgenic plants is illustrated in Table 9. TABLE 9ConfirmedPositiveevents/ActualNUCPEPevents/Totalevents withSEQSEQeventsconfirmationIDIDPHE IDConstructscreenedattempted8347PHE0000012PMON678081/50/012351PHE0000016PMON677501/30/016355PHE0000022PMON678261/10/016355PHE0000022PMON678261/30/033372PHE0000039PMON678071/20/034373PHE0000040PMON778891/40/046385PHE0000051PMON688591/20/047386PHE0000052PMON678132/20/054393PHE0000058PMON683511/20/062401PHE0000067PMON678164/43/464403PHE0000069PMON678211/10/068407PHE0000073PMON683573/30/072411PHE0000077PMON678273/41/4101440PHE0000116PMON683672/20/0105444PHE0000120PMON688532/20/0108447PHE0000123PMON688552/30/2112451PHE0000127PMON688871/10/0116455PHE0000153PMON678174/54/5117456PHE0000154PMON678181/20/2120459PHE0000158PMON731692/20/2135474PHE0000177PMON688811/21/2136475PHE0000178PMON731661/20/0143482PHE0000185PMON694681/30/0146485PHE0000188PMON731672/20/0169508PHE0000235PMON731611/20/0176515PHE0000243PMON724672/20/2190529PHE0000264PMON688663/30/0193532PHE0000267PMON688672/21/2204543PHE0000279PMON688963/32/2214553PHE0000291PMON724553/31/2234573PHE0000312PMON724561/30/2235574PHE0000313PMON683781/21/2236575PHE0000314PMON683794/41/4237576PHE0000315PMON683812/40/2239578PHE0000317PMON683802/20/0249588PHE0000330PMON731642/30/0264603PHE0000347PMON683861/20/0265604PHE0000349PMON683891/10/0266605PHE0000350PMON744101/21/2268607PHE0000352PMON744091/50/5269608PHE0000353PMON731602/20/0284623PHE0000390PMON678361/20/0296635PHE0000403PMON678311/20/0301640PHE0000415PMON678464/50/5303642PHE0000418PMON694972/41/4304643PHE0000419PMON678481/20/2324663PHE0000440PMON724733/50/0331670PHE0000469PMON686361/30/0 A list of recombinant DNA constructs which improved growth in limited nitrogen in transgenic plants is illustrated in Table 10. TABLE 10ConfirmedPositiveevents/ActualNUCPEPevents/Totalevents withSEQSEQeventsconfirmationIDIDPHE IDConstructscreenedattempted2341PHE0000006PMON688611/50/15344PHE0000010PMON678004/52/48347PHE0000012PMON678061/31/116355PHE0000022PMON678263/31/317356PHE0000024PMON683541/40/420359PHE0000227PMON683762/40/024363PHE0000027PMON850092/60/031370PHE0000034PMON678052/60/232371PHE0000038PMON683831/60/233372PHE0000039PMON678071/30/234373PHE0000040PMON678011/50/034373PHE0000040PMON778894/44/434373PHE0000040PMON924051/60/037376PHE0000045PMON812932/80/040379PHE0000244PMON683722/21/241380PHE0000245PMON683733/41/441380PHE0000245PMON847371/70/642381PHE0000246PMON683742/30/043382PHE0000247PMON683751/30/044383PHE0000106PMON694571/10/044383PHE0000106PMON924833/60/146385PHE0000051PMON688592/21/247386PHE0000052PMON678131/40/251390PHE0000055PMON683551/30/253392PHE0000057PMON683501/41/454393PHE0000058PMON683511/40/356395PHE0000060PMON683561/30/259398PHE0000064PMON678041/60/061400PHE0000292PMON688881/20/062401PHE0000067PMON678164/42/462401PHE0000067PMON928141/60/063402PHE0000068PMON678241/20/064403PHE0000069PMON678214/52/365404PHE0000070PMON678251/30/067406PHE0000072PMON678281/20/072411PHE0000077PMON678272/60/272411PHE0000077PMON778901/20/074413PHE0000079PMON677522/50/079418PHE0000086PMON678121/40/080419PHE0000089PMON841112/40/099438PHE0000114PMON683611/20/0100439PHE0000115PMON683621/10/0101440PHE0000116PMON683671/70/2102441PHE0000117PMON683681/20/2103442PHE0000118PMON678116/72/6104443PHE0000119PMON683631/40/1105444PHE0000120PMON688532/60/5108447PHE0000123PMON688553/40/3110449PHE0000125PMON683693/70/4111450PHE0000126PMON694584/71/4112451PHE0000127PMON688872/50/0114453PHE0000133PMON688601/40/0116455PHE0000153PMON678171/60/5117456PHE0000154PMON678182/21/2120459PHE0000158PMON731692/22/2129468PHE0000168PMON688571/50/5135474PHE0000177PMON688812/32/3135474PHE0000177PMON928004/60/0138477PHE0000180PMON837531/70/0140479PHE0000182PMON744203/31/2141480PHE0000183PMON802582/50/5142481PHE0000184PMON849852/50/0143482PHE0000185PMON694683/41/4146485PHE0000188PMON731671/40/2151490PHE0000219PMON688651/20/0169508PHE0000235PMON731611/21/2176515PHE0000243PMON724671/20/2182521PHE0000254PMON731721/40/0183522PHE0000255PMON724591/11/1190529PHE0000264PMON688661/40/3192531PHE0000266PMON694703/31/3193532PHE0000267PMON688672/52/2196535PHE0000270PMON847512/40/0197536PHE0000271PMON849813/90/0204543PHE0000279PMON688962/32/3205544PHE0000280PMON724512/20/2210549PHE0000287PMON688981/20/0214553PHE0000291PMON724553/33/3216555PHE0000294PMON688972/30/0217556PHE0000295PMON688942/40/4221560PHE0000299PMON688751/20/2223562PHE0000301PMON688771/60/0224563PHE0000302PMON688781/10/0227566PHE0000305PMON688801/10/0228567PHE0000306PMON688821/10/0234573PHE0000312PMON724562/42/3234573PHE0000312PMON9281111/110/0235574PHE0000313PMON683782/20/2236575PHE0000314PMON683794/44/4237576PHE0000315PMON683812/41/2238577PHE0000316PMON683821/31/2239578PHE0000317PMON683801/71/2241580PHE0000322PMON744031/10/0243582PHE0000324PMON731621/50/0245584PHE0000326PMON724631/10/0246585PHE0000327PMON694811/50/3247586PHE0000328PMON744161/40/4249588PHE0000330PMON731641/50/3255594PHE0000336PMON744142/40/0262601PHE0000345PMON744111/30/0264603PHE0000347PMON683862/21/2266605PHE0000350PMON744102/62/2268607PHE0000352PMON744093/51/5269608PHE0000353PMON731602/42/2269608PHE0000353PMON925823/80/0270609PHE0000354PMON818792/71/6272611PHE0000356PMON724641/40/0284623PHE0000390PMON678361/21/2286625PHE0000392PMON763352/21/2295634PHE0000402PMON678331/30/1298637PHE0000412PMON678432/32/3301640PHE0000415PMON678462/52/5302641PHE0000416PMON678472/21/2303642PHE0000418PMON694973/42/4304643PHE0000419PMON678483/32/3306645PHE0000421PMON837601/80/0312651PHE0000428PMON744171/10/0313652PHE0000429PMON744181/20/2321660PHE0000437PMON686301/20/1324663PHE0000440PMON724733/62/5325664PHE0000441PMON724741/50/1326665PHE0000451PMON724751/30/0327666PHE0000452PMON724761/10/0338677PHE0000486PMON694963/50/0339678PHE0000017PMON688504/40/3 Nitrogen Use Field Efficacy Assay Level I. Transgenic plants provided by the present invention are planted in field without any nitrogen source being applied. Transgenic plants and control plants are grouped by genotype and construct with controls arranged randomly within genotype blocks. Each type of transgenic plants are tested by 3 replications and across 5 locations. Nitrogen levels in the fields are analyzed in early April pre-planting by collecting 30 sample soil cores from 0-24″ and 24 to 48″ soil layer. Soil samples are analyzed for nitrate-nitrogen, phosphorus(P), Potassium (K), organic matter and pH to provide baseline values. P, K and micronutrients are applied based upon soil test recommendations. A list of recombinant DNA constructs which improved growth without any nitrogen source in transgenic plants is illustrated in Table 11. TABLE 11ConfirmedPositiveevents/ActualNUCPEPevents/Totalevents withSEQSEQeventsconfirmationIDIDPHEConstructscreenedattempted34373PHE0000040PMON924051/30/062401PHE0000067PMON928141/30/061400PHE0000292PMON938511/30/0236575PHE0000314PMON941232/30/0 Level II. Transgenic plants provided by the present invention are planted in field with three levels of nitrogen (N) fertilizer being applied, i.e. low level (0 N), medium level (80 lb/ac) and high level (180 lb/ac). Liquid 28% or 32% UAN (Urea, Ammonium Nitrogen) are used as the N source and apply by broadcast boom and incorporate with a field cultivator with rear rolling basket in the same direction as intended crop rows. Although there is no N applied to the 0 N treatment the soil should still be disturbed in the same fashion as the treated area. Transgenic plants and control plants are grouped by genotype and construct with controls arranged randomly within genotype blocks. Each type of transgenic plants is tested by 3 replications and across 4 locations. Nitrogen levels in the fields are analyzed in early April pre-planting by collecting 30 sample soil cores from 0-24″ and 24 to 48″ soil layer. Soil samples are analyzed for nitrate-nitrogen, phosphorus (P), Potassium (K), organic matter and pH to provide baseline values. P, K and micronutrients are applied based upon soil test recommendations. B. Selection for Increased Yield Many transgenic plants of this invention exhibit improved yield as compared to a control plant. Improved yield can result from enhanced seed sink potential, i.e. the number and size of endosperm cells or kernels and/or enhanced sink strength, i.e. the rate of starch biosynthesis. Sink potential can be established very early during kernel development, as endosperm cell number and size are determined within the first few days after pollination. Much of the increase in corn yield of the past several decades has resulted from an increase in planting density. During that period, corn yield has been increasing at a rate of 2.1 bushels/acre/year, but the planting density has increased at a rate of 250 plants/acre/year. A characteristic of modern hybrid corn is the ability of these varieties to be planted at high density. Many studies have shown that a higher than current planting density should result in more biomass production, but current germplasm does not perform. well at these higher densities. One approach to increasing yield is to increase harvest index (HI), the proportion of biomass that is allocated to the kernel compared to total biomass, in high density plantings. Effective yield selection of enhanced yielding transgenic corn events uses hybrid progeny of the transgenic event over multiple locations with plants grown under optimal production management practices, and maximum pest control. A useful target for improved yield is a 5% to 10% increase in yield as compared to yield produced by plants grown from seed for a control plant. Selection methods may be applied in multiple and diverse geographic locations, for example up to 16 or more locations, over one or more plating seasons, for example at least two planting seasons to statistically distinguish yield improvement from natural environmental effects. It is to plant multiple transgenic plants, positive and negative control plants, and pollinator plants in standard plots, for example 2 row plots, 20 feet long by 5 feet wide with 30 inches distance between rows and a 3 foot alley between ranges. Transgenic events can be grouped by recombinant DNA constructs with groups randomly placed in the field. A pollinator plot of a high quality corn line is planted for every two plots to allow open pollination when using male sterile transgenic events. A useful planting density is about 30,000 plants/acre. High planting density is greater than 30,000 plants/acre, preferably about 40,000 plants/acre, more preferably about 42,000 plants/acre, most preferably about 45,000 plants/acre. Surrogate indicators for yield improvement include source capacity (biomass), source output (sucrose and photosynthesis), sink components (kernel size, ear size, starch in the seed), development (light response, height, density tolerance), maturity, early flowering trait and physiological responses to high density planting, for example at 45,000 plants per acre, for example as illustrated in Table 12 and 13. TABLE 12TimingEvaluationDescriptioncommentsV2-3Early standCan be taken any time aftergermination and prior toremoval of any plants.Pollen shedGDU to 50% shedGDU to 50% plants shedding50% tassel.SilkingGDU to 50% silkGDU to 50% plants showingsilks.MaturityPlant heightHeight from soil surface to10 plants per plot - Yieldflag leaf attachment (inches).team assistanceMaturityEar heightHeight from soil surface to10 plants per plot - Yieldprimary ear attachment node.team assistanceMaturityLeaves above earvisual scores: erect, size,rollingMaturityTassel sizeVisual scores +/− vs. WTPre-HarvestFinal StandFinal stand count prior toharvest, exclude tillersPre-HarvestStalk lodgingNo. of stalks broken belowthe primary ear attachment.Exclude leaning tillersPre-HarvestRoot lodgingNo. of stalks leaning >45°angle from perpendicular.Pre-HarvestStay greenAfter physiological maturityand when differences amonggenotypes are evident: Scale1 (90-100% tissue green) − 9(0-19% tissue green).HarvestGrain YieldGrain yield/plot (Shellweight) TABLE 13TimingEvaluationDescriptionV8-V12ChlorophyllV12-VTEar leaf areaV15-15DAPChl fluorescenceV15-15DAPCER15-25 DAPCarbohydratessucrose, starchPre-Harvest1st internode diameterPre-HarvestBase 3 internode diameterPre-HarvestEar internode diameterMaturityEar traitsdiameter, length, kernelnumber, kernel weight Electron transport rates (ETR) and CO2 exchange rates (CER): ETR and CER are measured with Li6400LCF (Licor, Lincoln, Nebr.) around V9-R1 stages. Leaf chlorophyll fluorescence is a quick way to monitor the source activity and is reported to be highly correlated with CO 2 assimilation under varies conditions (Photosyn Research, 37: 89-102). The youngest fully expanded leaf or 2 leaves above the ear leaf is measured with actinic light 1500 (with 10% blue light) micromol m −2 s −1 , 28° C., CO2 levels 450 ppm. Ten plants are measured in each event. There are 2 readings for each plant. A hand-held chlorophyll meter SPAD-502 (Minolta—Japan) is used to measure the total chlorophyll level on live transgenic plants and the wild type counterparts a. Three trifoliates from each plant are analyzed, and each trifoliate were analyzed three times. Then 9 data points are averaged to obtain the chlorophyll level. The number of analyzed plants of each genotype ranges from 5 to 8. When selecting for yield improvement a useful statistical measurement approach comprises three components, i.e. modeling spatial autocorrelation of the test field separately for each location, adjusting traits of recombinant DNA events for spatial dependence for each location, and conducting an across location analysis. The first step in modeling spatial autocorrelation is estimating the covariance parameters of the semivariogram. A spherical covariance model is assumed to model the spatial autocorrelation. Because of the size and nature of the trial, it is likely that the spatial autocorrelation may change. Therefore, anisotropy is also assumed along with spherical covariance structure. The following set of equations describes the statistical form of the anisotropic spherical covariance model. where I() is the indicator function, h=√{square root over ({dot over (x)} 2 +{dot over (y)} 2 )}, and {dot over (x)} =[cos(ρπ/180)( x 1 −x 2 )−sin(ρπ/180)( y 1 −y 2 )]/ω x {dot over (y)} =[sin(ρπ/180)( x 1 −x 2 )+cos(ρπ/180)( y 1 −y 2 )]/ω y where s 1 =(x 1 , y 1 ) are the spatial coordinates of one location and s 2 =(x 2 , y 2 ) are the spatial coordinates of the second location. There are 5 covariance parameters, θ=(V, σ 2 , ρ, ω n , ω j ), where v is the nugget effect, σ 2 is the partial sill, ρ is a rotation in degrees clockwise from north, ω n is a scaling parameter for the minor axis and ω j is a scaling parameter for the major axis of an anisotropical ellipse of equal covariance. The five covariance parameters that defines the spatial trend will then be estimated by using data from heavily replicated pollinator plots via restricted maximum likelihood approach. In a multi-location field trial, spatial trend are modeled separately for each location. After obtaining the variance parameters of the model, a variance-covariance structure is generated for the data set to be analyzed. This variance-covariance structure contains spatial information required to adjust yield data for spatial dependence. In this case, a nested model that best represents the treatment and experimental design of the study is used along with the variance-covariance structure to adjust the yield data. During this process the nursery or the seed batch effects can also be modeled and estimated to adjust the yields for any yield parity caused by seed batch differences. After spatially adjusted data from different locations are generated, all adjusted data is combined and analyzed assuming locations as replications. In this analysis, intra and inter-location variances are combined to estimate the standard error of yield from transgenic plants and control plants. Relative mean comparisons are used to indicate statistically significant yield improvements. A list of recombinant DNA constructs which show improved yield in transgenic plants is illustrated in Table 14. TABLE 14ConfirmedPositiveevents/ActualNUCPEPevents/Totalevents withSEQSEQeventsconfirmationIDIDPHE IDConstructscreenedattempted12351PHE0000016PMON677501/40/214353PHE0000019PMON808791/30/015354PHE0000020PMON812411/80/031370PHE0000034PMON678051/60/432371PHE0000038PMON683831/70/033372PHE0000039PMON678071/30/241380PHE0000245PMON683731/40/142381PHE0000246PMON683741/30/243382PHE0000247PMON683751/40/268407PHE0000073PMON683571/60/572411PHE0000077PMON678272/81/495434PHE0000108PMON678491/40/3101440PHE0000116PMON683671/70/6102441PHE0000117PMON683681/20/1103442PHE0000118PMON678111/70/4105444PHE0000120PMON688531/60/2112451PHE0000127PMON688872/50/3116455PHE0000153PMON678171/60/5117456PHE0000154PMON678181/31/2123462PHE0000161PMON822311/40/0135474PHE0000177PMON688811/30/2136475PHE0000178PMON731661/20/1143482PHE0000185PMON694681/41/2146485PHE0000188PMON731671/40/4148487PHE0000192PMON683941/70/5214553PHE0000291PMON724551/30/3230569PHE0000308PMON688842/30/1257596PHE0000338PMON686281/20/2263602PHE0000346PMON731651/30/2264603PHE0000347PMON683861/20/2265604PHE0000349PMON683891/41/1280619PHE0000386PMON678341/30/3303642PHE0000418PMON694971/40/2326665PHE0000451PMON724751/30/0 C. Selection for Enhanced Water Use Efficiency (WUE) Described in this example is a high-throughput method for greenhouse selection of transgenic corn plants to wild type corn plants (tested as inbreds or hybrids) for water use efficiency. This selection process imposes 3 drought/re-water cycles on plants over a total period of 15 days after an initial stress free growth period of 11 days. Each cycle consists of 5 days, with no water being applied for the first four days and a water quenching on the 5th day of the cycle. The primary phenotypes analyzed by the selection method are the changes in plant growth rate as determined by height and biomass during a vegetative drought treatment. The hydration status of the shoot tissues following the drought is also measured. The plant height are measured at three time points. The first is taken just prior to the onset drought when the plant is 11 days old, which is the shoot initial height (SIH). The plant height is also measured halfway throughout the drought/re-water regimen, on day 18 after planting, to give rise to the shoot mid-drought height (SMH). Upon the completion of the final drought cycle on day 26 after planting, the shoot portion of the plant is harvested and measured for a final height, which is the shoot wilt height (SWH) and also measured for shoot wilted biomass (SWM). The shoot is placed in water at 40 degree Celsius in the dark. Three days later, the shoot is weighted to give rise to the shoot turgid weight (STM). After drying in an oven for four days, the shoots are weighted for shoot dry biomass (SDM). The shoot average height (SAH) is the mean plant height across the 3 height measurements. The procedure described above may be adjusted for +/−˜one day for each step given the situation. To correct for slight differences between plants, a size corrected growth value is derived from SIH and SWH. This is the Relative Growth Rate (RGR). Relative Growth Rate (RGR) is calculated for each shoot using the formula [RGR %=(SWH−SIH)/((SWH+SIH)/2)*100]. Relative water content (RWC) is a measurement of how much (%) of the plant was water at harvest. Water Content (RWC) is calculated for each shoot using the formula [RWC %=(SWM−SDM)/(STM−SDM)*100]. Fully watered corn plants of this age run around 98% RWC. A list of recombinant DNA constructs which improved water use efficiency in transgenic plants is illustrated in Table 15. TABLE 15ConfirmedPositiveevents/ActualNUCPEPevents/Totalevents withSEQSEQeventsconfirmationIDIDPHEConstructscreenedattempted2341PHE0000006PMON688613/50/45344PHE0000010PMON678002/50/48347PHE0000012PMON678064/91/812351PHE0000016PMON677503/41/415354PHE0000020PMON812412/80/016355PHE0000022PMON678262/31/217356PHE0000024PMON683545/71/520359PHE0000227PMON683763/50/423362PHE0000049PMON809121/50/031370PHE0000034PMON678054/70/732371PHE0000038PMON683831/80/133372PHE0000039PMON678072/30/234373PHE0000040PMON678013/50/534373PHE0000040PMON778891/40/037376PHE0000045PMON812931/80/441380PHE0000245PMON683732/51/342381PHE0000246PMON683742/31/243382PHE0000247PMON683753/41/246385PHE0000051PMON688592/41/247386PHE0000052PMON678133/50/548387PHE0000382PMON744011/30/351390PHE0000055PMON683551/31/353392PHE0000057PMON683504/41/454393PHE0000058PMON683512/31/256395PHE0000060PMON683563/42/361400PHE0000292PMON688882/20/262401PHE0000067PMON678162/40/364403PHE0000069PMON678214/50/565404PHE0000070PMON678253/31/367406PHE0000072PMON678282/22/268407PHE0000073PMON683576/9N/A72411PHE0000077PMON678271/61/574413PHE0000079PMON677525/51/579418PHE0000086PMON678123/50/083422PHE0000092PMON683596/70/495434PHE0000108PMON678493/41/499438PHE0000114PMON683611/20/1101440PHE0000116PMON683673/70/7102441PHE0000117PMON683681/21/2103442PHE0000118PMON678115/73/6104443PHE0000119PMON683632/41/2105444PHE0000120PMON688532/60/2108447PHE0000123PMON688552/40/3110449PHE0000125PMON683692/70/3111450PHE0000126PMON694581/60/6112451PHE0000127PMON688871/50/4114453PHE0000133PMON688603/40/4115454PHE0000152PMON778991/70/4116455PHE0000153PMON678173/61/6117456PHE0000154PMON678182/32/2123462PHE0000161PMON822312/40/0124463PHE0000162PMON754882/60/0129468PHE0000168PMON688571/50/2134473PHE0000176PMON683881/40/2135474PHE0000177PMON688811/30/2136475PHE0000178PMON731662/20/2143482PHE0000185PMON694683/40/3144483PHE0000186PMON694602/21/1146485PHE0000188PMON731671/40/4148487PHE0000192PMON683946/70/1169508PHE0000235PMON731612/20/2170509PHE0000237PMON688912/20/2171510PHE0000238PMON694663/30/3172511PHE0000239PMON724661/51/4177516PHE0000249PMON744221/20/0180519PHE0000252PMON744071/40/0186525PHE0000260PMON754872/60/0190529PHE0000264PMON688662/31/3193532PHE0000267PMON688671/51/3203542PHE0000277PMON688901/20/1204543PHE0000279PMON688962/30/2210549PHE0000287PMON688982/30/2214553PHE0000291PMON724551/30/3216555PHE0000294PMON688971/30/0217556PHE0000295PMON688942/20/2219558PHE0000297PMON688992/40/4221560PHE0000299PMON688751/21/2223562PHE0000301PMON688772/60/5228567PHE0000306PMON688821/10/1233572PHE0000311PMON724581/10/0234573PHE0000312PMON724562/40/4235574PHE0000313PMON683781/31/2236575PHE0000314PMON683792/42/4237576PHE0000315PMON683811/40/4238577PHE0000316PMON683821/40/3239578PHE0000317PMON683805/51/5241580PHE0000322PMON744031/11/1242581PHE0000323PMON684001/70/0243582PHE0000324PMON731624/51/5245584PHE0000326PMON724632/51/5246585PHE0000327PMON694811/50/5247586PHE0000328PMON744162/40/4249588PHE0000330PMON731641/50/5251590PHE0000332PMON683851/30/1252591PHE0000333PMON754701/60/0253592PHE0000334PMON683952/90/2262601PHE0000345PMON744116/82/8263602PHE0000346PMON731651/30/3264603PHE0000347PMON683861/20/1265604PHE0000349PMON683891/20/2266605PHE0000350PMON744101/60/6268607PHE0000352PMON744091/50/5269608PHE0000353PMON731604/43/4272611PHE0000356PMON724642/40/3280619PHE0000386PMON678341/30/0294633PHE0000401PMON678374/50/0301640PHE0000415PMON678461/50/0303642PHE0000418PMON694972/40/0304643PHE0000419PMON678482/30/0310649PHE0000426PMON744081/50/0313652PHE0000429PMON744182/30/2339678PHE0000017PMON688503/41/4 D. Selection for Growth Under Cold Stress (1) Cold germination assay—Three sets of seeds are used for the assay. The first set consists of positive transgenic events (F1 hybrid) where the genes of the present invention are expressed in the seed. The second seed set is nontransgenic, wild-type negative control made from the same genotype as the transgenic events. The third set consisted of two cold tolerant and one cold sensitive commercial check lines of corn. All seeds are treated with a fungicide “Captan” (MAESTRO® 80DF Fungicide, Arvesta Corporation, San Francisco, Calif., USA). 0.43 mL Captan is applied per 45 g of corn seeds by mixing it well and drying the fungicide prior to the experiment. Corn kernels are placed embryo side down on blotter paper within an individual cell (8.9×8.9 cm) of a germination tray (54×36 cm). Ten seeds from an event are placed into one cell of the germination tray. Each tray can hold 21 transgenic events and 3 replicates of wildtype (LH244SDms+LH59), which is randomized in a complete block design. For every event there are five replications (five trays). The trays are placed at 9.7 C for 24 days (no light) in a Convrion growth chamber (Conviron Model PGV36, Controlled Environments, Winnipeg, Canada). Two hundred and fifty millilters of deionized water are added to each germination tray. Germination counts are taken 10th, 11th, 12th, 13th, 14th, 17th, 19th, 21st, and 24th day after start date of the experiment. Seeds are considered germinated if the emerged radicle size is 1 cm. From the germination counts germination index is calculated. The germination index is calculated as per: Germination index=(Σ([ T+ 1 −n i ]*[P i −P i−1 ]))/ T Where T is the total number of days for which the germination assay is performed. The number of days after planting is defined by n. “i” indicated the number of times the germination had been counted, including the current day. P is the percentage of seeds germinated during any given rating. Statistical differences are calculated between transgenic events and wild type control. After statistical analysis, the events that show a statistical significance at the p level of less than 0.1 relative to wild-type controls will advance to a secondary cold selection. The secondary cold screen is conducted in the same manner of the primary selection only increasing the number of repetitions to ten. Statistical analysis of the data from the secondary selection is conducted to identify the events that show a statistical significance at the p level of less than 0.05 relative to wild-type controls. A list of recombinant DNA constructs which improve growth in seed under cold stress in transgenic plants is illustrated in Table 16. TABLE 16ConfirmedPositiveevents/ActualNUCPEPevents/Totalevents withSEQSEQeventsconfirmationIDIDPHEConstructscreenedattempted2341PHE0000006PMON688611/40/15344PHE0000010PMON678001/50/58347PHE0000012PMON678083/70/312351PHE0000016PMON677500/40/114353PHE0000019PMON808791/80/016355PHE0000022PMON678261/40/217356PHE0000024PMON683541/70/529368PHE0000032PMON836273/71/731370PHE0000034PMON678055/74/633372PHE0000039PMON678071/30/234373PHE0000040PMON678012/51/434373PHE0000040PMON924051/70/041380PHE0000245PMON683731/30/242381PHE0000246PMON683742/31/243382PHE0000247PMON683752/40/244383PHE0000106PMON924831/70/053392PHE0000057PMON683503/41/356395PHE0000060PMON683563/32/361400PHE0000292PMON688881/20/262401PHE0000067PMON678162/42/464403PHE0000069PMON678211/50/368407PHE0000073PMON683575/94/972411PHE0000077PMON678271/60/574413PHE0000079PMON677520/50/086425PHE0000098PMON731681/20/092431PHE0000104PMON686084/63/495434PHE0000108PMON678491/40/2101440PHE0000116PMON683674/72/7103442PHE0000118PMON678115/72/6105444PHE0000120PMON688535/62/5108447PHE0000123PMON688551/50/3109448PHE0000124PMON688561/50/3111450PHE0000126PMON694582/71/7112451PHE0000127PMON688874/53/4114453PHE0000133PMON688603/40/4115454PHE0000152PMON778994/73/7116455PHE0000153PMON678176/65/6117456PHE0000154PMON678181/21/1117456PHE0000154PMON850351/70/0120459PHE0000158PMON731691/20/1123462PHE0000161PMON822311/40/0124463PHE0000162PMON754881/50/0129468PHE0000168PMON688573/52/3133472PHE0000173PMON731711/30/0135474PHE0000177PMON688811/30/2136475PHE0000178PMON731661/20/1141480PHE0000183PMON802583/50/5143482PHE0000185PMON694683/41/3146485PHE0000188PMON731671/41/2148487PHE0000192PMON683941/10/0165504PHE0000231PMON724983/72/7168507PHE0000234PMON731591/10/0169508PHE0000235PMON731612/20/2170509PHE0000237PMON688912/20/2171510PHE0000238PMON694663/30/3172511PHE0000239PMON724662/51/4173512PHE0000240PMON724683/51/5182521PHE0000254PMON731721/60/0190529PHE0000264PMON688664/43/4191530PHE0000265PMON694691/10/0192531PHE0000266PMON694703/42/3193532PHE0000267PMON688672/61/4196535PHE0000270PMON847511/50/1199538PHE0000273PMON744231/20/0204543PHE0000279PMON688961/30/2210549PHE0000287PMON688983/41/2214553PHE0000291PMON724553/32/3217556PHE0000295PMON688943/40/2219558PHE0000297PMON688991/41/3220559PHE0000298PMON688742/51/3230569PHE0000308PMON688843/32/2234573PHE0000312PMON724561/41/3234573PHE0000312PMON928112/70/7236575PHE0000314PMON683791/40/3237576PHE0000315PMON683812/40/2239578PHE0000317PMON683803/71/7242581PHE0000323PMON684004/52/5246585PHE0000327PMON694811/51/3247586PHE0000328PMON744162/61/2249588PHE0000330PMON731643/51/5252591PHE0000333PMON754702/30/0253592PHE0000334PMON683954/91/5254593PHE0000335PMON744131/60/2260599PHE0000341PMON683972/20/0262601PHE0000345PMON744117/83/6266605PHE0000350PMON744101/60/3268607PHE0000352PMON744091/50/3269608PHE0000353PMON731604/43/4272611PHE0000356PMON724644/40/4280619PHE0000386PMON678341/30/0295634PHE0000402PMON678332/30/1300639PHE0000414PMON6784510/0306645PHE0000421PMON837601/80/0317656PHE0000433PMON744241/20/0324663PHE0000440PMON724735/61/6325664PHE0000441PMON724742/51/5328667PHE0000453PMON924091/40/0337676PHE0000485PMON694984/72/7338677PHE0000486PMON694962/51/5 (2) Cold Shock assay—The experimental set-up for the cold shock assay is the same as described in the above cold germination assay except seeds were grown in potted media for the cold shock assay. The desired numbers of 2.5″ square plastic pots are placed on flats (n=32, 4×8). Pots were filled with Metro Mix 200 soil-less media containing 19:6:12 fertilizer (6 lbs/cubic yard) (Metro Mix, Pots and Flat are obtained from Hummert International, Earth City, Mo.). After planting seeds, pots are placed in a growth chamber set at 23° C., relative humidity of 65% with 12 hour day and night photoperiod (300 uE/m2-min). Planted seeds are watered for 20 minute every other day by sub-irrigation and flats were rotated every third day in a growth chamber for growing corn seedlings. On the 10 th day after planting the transgenic positive and wild-type negative (WT) plants are positioned in flats in an alternating pattern. Chlorophyll fluorescence of plants is measured on the 10 th day during the dark period of growth by using a PAM-2000 portable fluorometer as per the manufacturer's instructions (Walz, Germany). After chlorophyll measurements, leaf samples from each event are collected for confirming the expression of genes of the present invention. For expression analysis six V1 leaf tips from each selection are randomly harvested. The flats are moved to a growth chamber set at 5° C. All other conditions such as humidity, day/night cycle and light intensity are held constant in the growth chamber. The flats are sub-irrigated every day after transfer to the cold temperature. On the 4 th day chlorophyll fluorescence is measured. Plants are transferred to normal growth conditions after six days of cold shock treatment and allowed to recover for the next three days. During this recovery period the length of the V3 leaf is measured on the 1 st and 3 rd days. After two days of recovery V2 leaf damage is determined visually by estimating percent of green V2 leaf. Statistical differences in V3 leaf growth, V2 leaf necrosis and fluorescence during pre-shock and cold shock can be used for estimation of cold shock damage on corn plants. (3) Early seedling growth assay—Three sets of seeds are used for the experiment. The first set consists of positive transgenic events (F1 hybrid) where the genes of the present invention are expressed in the seed. The second seed set is nontransgenic, wild-type negative control made from the same genotype as the transgenic events. The third seed set consists of two cold tolerant and two cold sensitive commercial check lines of corn. All seeds are treated with a fungicide “Captan”, (3a,4,7,a-tetrahydro-2-[(trichloromethly)thio]-1H-isoindole-1,3(2H)-dione, Drex Chemical Co. Memphis, Tenn.). Seeds are grown in germination paper for the early seedling growth assay. Three 12″×18″ pieces of germination paper (Anchor Paper #SD7606) are used for each entry in the test (three repetitions per transgenic event). The papers are wetted in a solution of 0.5% KNO 3 and 0.1% Thyram. For each paper fifteen seeds are placed on the line evenly spaced down the length of the paper. The fifteen seeds are positioned on the paper such that the radical would grow downward, for example longer distance to the paper's edge. The wet paper is rolled up starting from one of the short ends. The paper is rolled evenly and tight enough to hold the seeds in place. The roll is secured into place with two large paper clips, one at the top and one at the bottom. The rolls are incubated in a growth chamber at 23° C. for three days in a randomized complete block design within an appropriate container. The chamber is set for 65% humidity with no light cycle. For the cold stress treatment the rolls are then incubated in a growth chamber at 12° C. for twelve days. The chamber is set for 65% humidity with no light cycle. After the cold treatment the germination papers are unrolled and the seeds that did not germinate are discarded. The lengths of the radicle and coleoptile for each seed are measured through an automated imaging program that automatically collects and processes the images. The imaging program automatically measures the shoot length, root length, and whole seedling length of every individual seedling and then calculates the average of each roll. After statistical analysis, the events that show a statistical significance at the p level of less than 0.1 relative to wild-type controls will advance to a secondary cold selection. The secondary cold selection is conducted in the same manner of the primary selection only increasing the number of repetitions to five. Statistical analysis of the data from the secondary selection is conducted to identify the events that show a statistical significance at the p level of less than 0.05 relative to wild-type controls. 4. Cold Field Efficacy Trial This example sets forth a cold field efficacy trial to identify gene constructs that confer enhanced cold vigor at germination and early seedling growth under early spring planting field conditions in conventional-till and simulated no-till environments. Seeds are planted into the ground around two weeks before local farmers are beginning to plant corn so that a significant cold stress is exerted onto the crop, named as cold treatment. Seeds also are planted under local optimal planting conditions such that the crop has little or no exposure to cold condition, named as normal treatment. The cold field efficacy trials are carried out in five locations, including Glyndon Minn., Mason Mich., Monmouth Ill., Dayton Iowa, Mystic Conn. At each location, seeds are planted under both cold and normal conditions with 3 repetitions per treatment, 20 kernels per row and single row per plot. Seeds are planted 1.5 to 2 inch deep into soil to avoid muddy conditions. Two temperature monitors are set up at each location to monitor both air and soil temperature daily. Seed emergence is defined as the point when the growing shoot breaks the soil surface. The number of emerged seedling in each plot is counted everyday from the day the earliest plot begins to emerge until no significant changes in emergence occur. In addition, for each planting date, the latest date when emergence is 0 in all plots is also recorded. Seedling vigor is also rated at V3-V4 stage before the average of corn plant height reaches 10 inches, with 1=excellent early growth, 5=Average growth and 9=poor growth. Days to 50% emergence, maximum percent emergence and seedling vigor are calculated using SAS software for the data within each location or across all locations. A list of recombinant DNA constructs which enhanced cold vigor at germination and early seedling growth under early spring planting field conditions in table 17. TABLE 17ConfirmedPositiveevents/ActualNUCPEPevents/Totalevents withSEQSEQeventsconfirmationIDIDPHEConstructscreenedattempted31370PHE0000034PMON678050/034373PHE0000040PMON678011/50/092431PHE0000104PMON686083/40/0124463PHE0000162PMON754881/40/0129468PHE0000168PMON688572/30/0143482PHE0000185PMON694682/30/0165504PHE0000231PMON724982/30/0192531PHE0000266PMON694702/20/0242581PHE0000323PMON684001/30/0262601PHE0000345PMON744114/40/0269608PHE0000353PMON731601/40/0294633PHE0000401PMON678371/30/0310649PHE0000426PMON744081/40/0337676PHE0000485PMON694982/30/0 E. Screens for Transgenic Plant Seeds with Increased Protein and/or Oil Levels This example sets forth a high-throughput selection for identifying plant seeds with improvement in seed composition using the Infratec 1200 series Grain Analyzer, which is a near-infrared transmittance spectrometer used to determine the composition of a bulk seed sample. Near infrared analysis is a non-destructive, high-throughput method that can analyze multiple traits in a single sample scan. An NIR calibration for the analytes of interest is used to predict the values of an unknown sample. The NIR spectrum is obtained for the sample and compared to the calibration using a complex chemometric software package that provides a predicted values as well as information on how well the sample fits in the calibration. Infratec Model 1221, 1225, or 1227 with transport module by Foss North America is used with cuvette, item # 1000-4033, Foss North America or for small samples with small cell cuvette, Foss standard cuvette modified by Leon Girard Co. Corn and soy check samples of varying composition maintained in check cell cuvettes are supplied by Leon Girard Co. NIT collection software is provided by Maximum Consulting Inc. Software. Calculations are performed automatically by the software. Seed samples are received in packets or containers with barcode labels from the customer. The seed is poured into the cuvettes and analyzed as received. The detail information has been provided in Table 18. TABLE 18Typical sample(s):Whole grain corn and soybean seedsAnalytical time to run method:Less than 0.75 min per sampleTotal elapsed time per run:1.5 minute per sampleTypical and minimum sampleCorn typical: 50 cc; minimum 30 ccsize:Soybean typical: 50 cc; minimum 5 ccTypical analytical range:Determined in part by the specificcalibration.Corn - moisture 5-15%, oil 5-20%,protein 5-30%, starch 50-75%, anddensity 1.0-1.3%.Soybean - moisture 5-15%, oil15-25%, and protein 35-50%. A list of recombinant DNA constructs which improve seed compositions in terms of protein content in transgenic plants is illustrated in Table 19. TABLE 19ConfirmedPositiveevents/ActualNUCPEPevents/Totalevents withSEQSEQeventsconfirmationIDIDPHEConstructscreenedattempted2341PHE0000006PMON688611/10/06345PHE0000278PMON688861/10/08347PHE0000012PMON576261/80/18347PHE0000012PMON678062/30/48347PHE0000012PMON678081/62/212351PHE0000016PMON677501/32/220359PHE0000227PMON683761/50/022361PHE0000259PMON744042/51/129368PHE0000032PMON836278/83/331370PHE0000034PMON678051/60/033372PHE0000039PMON678071/20/334373PHE0000040PMON678011/50/237376PHE0000045PMON812931/20/041380PHE0000245PMON683731/21/242381PHE0000246PMON683742/21/443382PHE0000247PMON683752/31/244383PHE0000106PMON694571/10/047386PHE0000052PMON678131/50/053392PHE0000057PMON683501/30/054393PHE0000058PMON683512/40/456395PHE0000060PMON683563/46/659398PHE0000064PMON678041/60/061400PHE0000292PMON688881/30/162401PHE0000067PMON678163/40/064403PHE0000069PMON678213/50/167406PHE0000072PMON678281/20/068407PHE0000073PMON683573/62/671410PHE0000076PMON688512/21/272411PHE0000077PMON678271/52/272411PHE0000077PMON778901/20/074413PHE0000079PMON677521/50/079418PHE0000086PMON678123/52/382421PHE0000091PMON683581/10/083422PHE0000092PMON683592/60/086425PHE0000098PMON731681/40/090429PHE0000102PMON678151/20/092431PHE0000104PMON686082/60/199438PHE0000114PMON683612/20/2101440PHE0000116PMON683673/70/4102441PHE0000117PMON683682/20/2103442PHE0000118PMON678116/66/16104443PHE0000119PMON683633/43/6105444PHE0000120PMON688531/22/2108447PHE0000123PMON688554/42/2110449PHE0000125PMON683692/72/2111450PHE0000126PMON694582/81/1112451PHE0000127PMON688872/41/4114453PHE0000133PMON688601/40/0115454PHE0000152PMON778992/72/2116455PHE0000153PMON678174/60/0117456PHE0000154PMON678181/30/0122461PHE0000160PMON754851/10/0124463PHE0000162PMON754882/50/0125464PHE0000164PMON731702/20/0129468PHE0000168PMON688571/51/1133472PHE0000173PMON731712/40/0134473PHE0000176PMON683881/30/0136475PHE0000178PMON731661/20/0138477PHE0000180PMON837535/81/5140479PHE0000182PMON744201/31/1143482PHE0000185PMON694682/30/2144483PHE0000186PMON694601/20/0146485PHE0000188PMON731671/40/1148487PHE0000192PMON683941/70/1149488PHE0000193PMON688892/30/0151490PHE0000219PMON688651/30/0155494PHE0000220PMON744344/82/3158497PHE0000223PMON694781/11/1165504PHE0000231PMON724981/50/0168507PHE0000234PMON731591/10/0170509PHE0000237PMON688911/20/0171510PHE0000238PMON694661/30/0172511PHE0000239PMON724663/50/0175514PHE0000242PMON724701/31/1180519PHE0000252PMON744072/40/1182521PHE0000254PMON731721/40/1186525PHE0000260PMON754872/60/0192531PHE0000266PMON694701/30/3193532PHE0000267PMON688673/52/2202541PHE0000276PMON688681/10/0203542PHE0000277PMON688901/20/0204543PHE0000279PMON688961/10/0204543PHE0000279PMON688961/10/0205544PHE0000280PMON724511/30/0214553PHE0000291PMON850372/151/2216555PHE0000294PMON688972/31/1217556PHE0000295PMON688943/40/4219558PHE0000297PMON688991/30/0220559PHE0000298PMON688742/40/1222561PHE0000300PMON688761/30/1223562PHE0000301PMON688773/60/0228567PHE0000306PMON688821/10/0230569PHE0000308PMON688841/20/2232571PHE0000310PMON683772/20/0233572PHE0000311PMON724581/10/0234573PHE0000312PMON724564/42/3236575PHE0000314PMON683792/40/0237576PHE0000315PMON683811/40/0238577PHE0000316PMON683822/31/1239578PHE0000317PMON683802/70/0243582PHE0000324PMON731622/50/0245584PHE0000326PMON724631/50/0247586PHE0000328PMON744163/40/0249588PHE0000330PMON731642/50/0252591PHE0000333PMON754701/40/0253592PHE0000334PMON683951/70/0255594PHE0000336PMON744142/40/1258597PHE0000339PMON686271/10/0262601PHE0000345PMON744113/80/0264603PHE0000347PMON683862/20/2266605PHE0000350PMON744103/61/3268607PHE0000352PMON744091/50/0269608PHE0000353PMON731601/42/2272611PHE0000356PMON724642/40/0280619PHE0000386PMON678341/30/1291630PHE0000398PMON724881/20/0296635PHE0000403PMON678311/30/3298637PHE0000412PMON678432/40/0300639PHE0000414PMON678451/10/0301640PHE0000415PMON678461/50/1303642PHE0000418PMON694972/42/2306645PHE0000421PMON837606/81/1309648PHE0000425PMON724951/10/0310649PHE0000426PMON744082/50/0312651PHE0000428PMON744171/10/0317656PHE0000433PMON744242/20/1321660PHE0000437PMON686303/42/3324663PHE0000440PMON724734/60/0325664PHE0000441PMON724743/50/0326665PHE0000451PMON724751/20/1329668PHE0000454PMON724771/30/0331670PHE0000469PMON686361/30/1338677PHE0000486PMON694961/50/0339678PHE0000017PMON688501/40/0 A list of recombinant DNA constructs which improve seed compositions in terms of oil content in transgenic plants is illustrated in Table 20. TABLE 20ConfirmedPositiveevents/ActualNUCPEPevents/Totalevents withSEQSEQeventsconfirmationIDIDPHEConstructscreenedattempted2341PHE0000006PMON688611/30/08347PHE0000012PMON576261/20/08347PHE0000012PMON678061/30/28347PHE0000012PMON678081/62/412351PHE0000016PMON677502/31/434373PHE0000040PMON678011/50/234373PHE0000040PMON778891/20/040379PHE0000244PMON683721/11/241380PHE0000245PMON683732/21/442381PHE0000246PMON683741/20/243382PHE0000247PMON683751/30/246385PHE0000051PMON688591/30/047386PHE0000052PMON678131/40/054393PHE0000058PMON683511/30/356395PHE0000060PMON683561/31/368407PHE0000073PMON683572/60/471410PHE0000076PMON688511/20/072411PHE0000077PMON678271/51/2101440PHE0000116PMON683671/70/3102441PHE0000117PMON683681/20/2103442PHE0000118PMON678116/64/15105444PHE0000120PMON688531/21/2108447PHE0000123PMON688551/30/2110449PHE0000125PMON683691/30/0111450PHE0000126PMON694581/30/0129468PHE0000168PMON688571/40/0169508PHE0000235PMON731611/20/0182521PHE0000254PMON731721/20/0193532PHE0000267PMON688671/41/2214553PHE0000291PMON724551/30/0216555PHE0000294PMON688971/10/0217556PHE0000295PMON688941/20/2219558PHE0000297PMON688991/40/0221560PHE0000299PMON688751/10/0222561PHE0000300PMON688761/10/0223562PHE0000301PMON688771/60/0238577PHE0000316PMON683821/10/0249588PHE0000330PMON731642/50/0269608PHE0000353PMON731601/41/2272611PHE0000356PMON724641/40/0296635PHE0000403PMON678311/20/1304643PHE0000419PMON678481/20/0321660PHE0000437PMON686301/20/0326665PHE0000451PMON724751/10/0327666PHE0000452PMON724761/10/0 Example 8 Consensus Sequence This example illustrates the identification of consensus amino acid sequence for the proteins and homologs encoded by DNA that is used to prepare the transgenic seed and plants of this invention having enhanced agronomic traits. ClustalW program was selected for multiple sequence alignments of the amino acid sequence of SEQ ID NO: 357, 358, 369, 397, 468, 497, 508, 512, 514, 516, 518, 541, 551, 570, 578, 608, 645, 653, 658, 660, 668, 669 and their homologs. Three major factors affecting the sequence alignments dramatically are (1) protein weight matrices; (2) gap open penalty; (3) gap extension penalty. Protein weight matrices available for ClustalW program include Blosum, Pam and Gonnet series. Those parameters with gap open penalty and gap extension penalty were extensively tested. On the basis of the test results, Blosum weight matrix, gap open penalty of 10 and gap extension penalty of 1 were chosen for multiple sequence alignment. FIG. 1 shows the consensus sequence of SEQ ID NO: 358 and its homologs. The symbols for consensus sequence are (1) uppercase letters for 100% identity in all positions of multiple sequence alignment output; (2) lowercase letters for >=70% identity; symbol; (3) “X” indicated <70% identity; (4) dashes “−” meaning that gaps were in >=70% sequences. The consensus amino acid sequence can be used to identify DNA corresponding to the full scope of this invention that is useful in providing transgenic plants, for example corn and soybean plants with enhanced agronomic traits, for example improved nitrogen use efficiency, improved yield, improved water use efficiency and/or improved growth under cold stress, due to the expression in the plants of DNA encoding a protein with amino acid sequence identical to the consensus amino acid sequence. Example 9 Pfam Domain Module Annoation This example illustrates the identification of domain and domain module by Pfam analysis. The amino acid sequence of the expressed proteins that were shown to be associated with an enhanced trait were analyzed for Pfam protein family against the current Pfam collection of multiple sequence alignments and hidden Markov models using the HMMER software in the appended computer listing. The Pfam domain modules and individual protein domain for the proteins of SEQ ID NO: 340 through 678 are shown in Table 21 and Table 22 respectively. The Hidden Markov model databases for the identified protein families are also in the appended computer listing allowing identification of other homologous proteins and their cognate encoding DNA to enable the full breadth of the invention for a person of ordinary skill in the art. Certain proteins are identified by a single Pfam domain and others by multiple Pfam domains. For instance, the protein with amino acids of SEQ ID NO: 401 is characterized by two Pfam domains, i.e KOW and eIF-5a. See also the protein with amino acids of SEQ ID NO: 346 which is characterized by two copies of the Pfam domain “AP2”. In Table 22 “score” is the gathering score for the Hidden Markov Model of the domain which exceeds the gathering cutoff reported in Table 23. TABLE 21PEP SEQ IDNOPfam module annoationpfam coordinates340Cellulose_synt167-977341AP2::B367-129::192-300342AP2::B366-128::181-294343AP2::B364-126::177-286344AP25-69345AP213-77346AP2::AP2111-174::203-267347MIP11-231348Cyclin_N::Cyclin_C63-195::197-317349Glyco_hydro_32N::Glyco_hydro_32C118-438::479-601350Dicty_CAR12-328351KNOX1::KNOX2::ELK::Homeobox102-146::153-204::242-263::273-324352CDC48_N::AAA::AAA30-116::247-431::520-707353AOX55-330354AOX26-333355Aa_trans32-471356PI3_PI4_kinase169-432359FA_desaturase156-400360FA_desaturase147-391361FA_desaturase140-384362PAS_2::GAF::Phytochrome::PAS::70-186::219-404::415-595::622-737::752-877::897-956::PAS::HisKA::HATPase_c1011-1123363PAS_2::GAF::Phytochrome::PAS::70-186::219-404::415-595::622-737::752-877::897-956::PAS::HisKA::HATPase_c1011-1123364PAS_2::GAF::Phytochrome::PAS::105-226::259-442::453-632::663-779::794-916::936-1000::PAS::HisKA::HATPase_c1048-1160365PAS_2::GAF::Phytochrome::PAS::114-234::267-449::460-639::670-786::801-923::943-1007::PAS::HisKA::HATPase_c1055-1167366PAS_2::GAF::Phytochrome::PAS::68-184::217-400::411-591::622-737::752-877::898-961::PAS::HisKA::HATPase_c1009-1121367PAS_2::GAF::Phytochrome::PAS::67-183::216-399::410-590::620-735::750-875::896-959::PAS::HisKA::HATPase_c1007-1121368Linker_histone::AT_hook::AT_hook::21-97::98-110::129-141::154-166::192-204AT_hook::AT_hook370GFO_IDH_MocA::GFO_IDH_MocA_C11-129::130-236371Cyclin_N::Cyclin_C54-186::188-314372PAS_3::PAS_3::Pkinase141-233::415-507::582-870373Globin17-157374Cyclin_N::Cyclin_C165-291::293-413375Cyclin_N4-144376Cyclin_N::Cyclin_C157-283::285-405377Cyclin_N::Cyclin_C243-370::372-499378Cyclin_N::Cyclin_C166-292::294-415379SRF-TF::K-box9-59::69-172380SRF-TF::K-box13-63::73-178381SRF-TF::K-box9-59::72-171382SRF-TF::K-box9-59::73-171383Cyclin_N::Cyclin_C244-371::373-500384Cyclin_N::Cyclin_C104-233::235-363385Cyclin_N::Cyclin_C163-289::291-411386Cyclin_N::Cyclin_C228-354::356-477387Cyclin_N::Cyclin_C173-299::301-421388Cyclin_N::Cyclin_C187-312::314-441389Cyclin_N47-190390Cyclin_N::Cyclin_C43-176::178-298391Cyclin_N55-184392NDK75-209393NDK89-223394NDK2-134395NDK2-135396SNF2_N::Helicase_C560-842::891-970398NDK33-170399HEAT::HEAT::HEAT::FAT::PI3_PI4_kinase::FATC248-284::746-782::787-824::1461-1847::2118-2368::2438-2470400eIF-5a86-155401KOW::eIF-5a26-60::84-151402DS45-377403Ribosomal_L18p26-173404Orn_Arg_deC_N::Orn_DAP_Arg_deC91-326::329-460405IBN_N29-93406SAM_decarbox23-396407SAM_decarbox12-319408SAM_decarbox12-346409RB_A::RB_B274-475::594-721410Gemini_AL1::Gemini_AL1_M9-127::129-233411Globin::FAD_binding_6::NAD_binding_16-133::151-263::276-373412AP24-68413FAE1_CUT1_RppA::ACP_syn_III_C79-367::381-465414Cyclin_N::Cyclin_C189-315::317-441415ABC_tran::ABC2_membrane::PDR_CDR::186-386::503-715::724-887::898-1087::1186-1404ABC_tran::ABC2_membrane416Cyclin_N66-173417Pkinase19-299418Pkinase20-346419PTR299-507420PTR2113-517421RRM_1::RRM_198-165::216-286422SET110-239423HSF_DNA-bind173-416424Clp_N::Clp_N::AAA::AAA_217-69::98-148::204-398::598-763425Clp_N::Clp_N::AAA::AAA_217-69::94-145::201-395::596-760426Clp_N::Clp_N::AAA::AAA_220-71::96-147::203-397::602-767427Clp_N::Clp_N::AAA::AAA_217-69::94-145::201-395::596-763428Cyclin_N47-183429polyprenyl_synt37-308430polyprenyl_synt45-316431polyprenyl_synt47-318432Cyclin_N56-202433Cyclin_N::Cyclin_C79-193::195-327434MtN3_slv::MtN3_slv6-95::128-214435MtN3_slv::MtN3_slv7-96::129-215436MtN3_slv::MtN3_slv8-77::125-211437PAS::Pkinase111-222::480-732438SET86-232439Response_reg13-149440Response_reg::Myb_DNA-binding15-128::203-253441Response_reg::CCT26-142::660-698442Response_reg::CCT44-160::588-626443Response_reg::Myb_DNA-binding26-139::213-263444Response_reg::Myb_DNA-binding13-126::197-247445Response_reg10-139446Response_reg12-135447Response_reg42-177448Response_reg37-157449Response_reg::CCT28-153::457-495450bZIP_164-128451GRAS149-455452GRAS162-497453WD40::WD40::WD40::WD40::WD40::WD4056-94::98-136::147-186::194-234::239-277::334-37245414-3-37-24245514-3-37-24245614-3-39-246457zf-NF-X1::zf-NF-X1::zf-NF-X1::zf-209-227::262-281::315-334::369-389::423-442NF-X1::zf-NF-X1458TAP4230-36745914-3-35-241460FBPase71-406461FBPase2-329462FBPase_glpX2-334463FBPase18-341464AAA217-404465S1::S1::S1603-676::1173-1245::1261-1336466DUF902::DUF906407-464::533-800469CS5-79470FKBP_C::FKBP_C::FKBP_C::TPR_1::TPR_153-147::169-264::286-383::452-485::486-519471TPR_1::TPR_1::TPR_1::TPR_1::5-38::40-73::74-107::262-295::336-369::396-429::430-463::TPR_1::TPR_1::TPR_1::TPR_1464-497472TPR_1::TPR_183-116::121-154473Ribonuclease_T228-217474GDA1_CD3991-547475Acid_phosphat_A65-399476Sugar_tr22-517477Sugar_tr26-520478Citrate_synt47-413479Citrate_synt46-409480Citrate_synt78-455481Citrate_synt90-458482Citrate_synt100-468483Ferritin88-233484Ferritin91-236485Ferritin7-144486LEA_4::LEA_410-79::90-163487HSF_DNA-bind15-189488HSF_DNA-bind22-224489DS44-361490Carb_anhydrase75-310491Carb_anhydrase38-264492Mito_carr::Mito_carr::Mito_carr24-123::129-236::247-338493Wzy_C311-377494RNase_PH15-135495DEAD::Helicase_C::DSHCT331-484::686-767::1094-1286496TPR_1::TPR_1::TPR_1::TPR_1508-541::702-735::736-769::1226-1259498RNase_PH::RNase_PH_C21-153::156-220499GTP_EFTU265-516500GTP_EFTU::GTP_EFTU_D2::GTP_EFTU_D3391-619::641-708::713-821501TP_methylase4-211502TP_methylase221-432503TP_methylase120-333504Asp85-441505Asp148-505506Asp139-476509Dehydrin14-167510Dehydrin25-286515HSP9_HSP121-59519F-box::LRR_217-64::299-323520LRR_2::LRR_1::LRR_1::LRR_1389-414::415-437::465-489::568-591521F-box::FBA_13-47::202-359522F-box::LRR_262-108::414-4385232OG-Fell_Oxy158-258524Aminotran_1_250-438525FA_desaturase73-313526Pyridoxal_deC63-412527p45040-480528p45044-477529p45060-515530p45042-496531p45073-511532p45041-466533LRRNT_2::LRR_1::LRR_1::LRR_1::127-167::194-216::218-240::266-288::290-312::314-336::LRR_1::LRR_1::LRR_1::LRR_1::338-360::362-384::458-480::551-573::575-597::598-620::LRR_1::LRR_1::LRR_1::LRR_1::646-668::670-692::694-716::718-741::754-776::778-800::LRR_1::LRR_1::LRR_1::LRR_1::826-848::851-870::875-894::927-949::951-973::1114-1396LRR_1::LRR_1::LRR_1::LRR_1::LRR_1::LRR_1::LRR_1::Pkinase534E2F_TDP::E2F_TDP12-77::148-224536E2F_TDP111-176537Dicty_CAR14-321538Mlo6-494539Mlo32-520540G-alpha12-376542AP2128-193543Aa_trans32-427544Aa_trans34-465545AT_hook::AT_hook::AT_hook::AT_hook::151-163::214-226::294-306::324-336::397-548::575-675::YDG_SRA::Pre-SET::SET677-830546GRAS146-452547MAT114-193548Cystatin48-135549Cystatin::Cystatin49-137::156-247550Cystatin14-104552PI3_PI4_kinase172-437553DS47-363554GRAS217-521555GRAS165-471556UQ_con20-159557UPF0016::UPF00169-84::145-220558AAA212-399559CS5-81560CS19-95561CS5-81562CS5-80563Metallophos44-255564Metallophos50-259565Ribonuclease_T223-245566Ribonuclease_T239-247567Ribonuclease_T230-215568Ribonuclease_T228-217569HLH19-68571RNase_PH::RNase_PH_C29-169::199-26557214-3-33-24057314-3-38-245574IF4E5-206575IF4E6-227576IF4E7-210577IF4E1-220579GRAS154-464580Catalase18-401581Catalase18-402582peroxidase17-224583GDI1-438584GDI1-452585Rho_GDI35-245586Cu_bind_like47-125587Cu_bind_like42-120588Cu_bind_like42-120589Cu_bind_like45-105590Cu_bind_like39-121591ADH_zinc_N160-307592ADH_zinc_N152-299593ADH_zinc_N165-314594ADH_N::ADH_zinc_N33-115::146-290595Abhydrolase_1175-412596Hexapep::Hexapep::Hexapep::Hexapep65-82::91-108::117-134::135-152597AhpC-TSA7-185598AhpC-TSA5-182599AhpC-TSA51-233600Redoxin4-176601AhpC-TSA69-248602Redoxin68-211603HSP20134-240604HSP2077-181605HSP2085-182606HSP2060-163607HSP2050-153609OPT104-758610Xan_ur_permease35-432611Xan_ur_permease38-445612F-box::Tub57-112::123-480613Tub1-251614HMG_CoA_synt_N::HMG_CoA_synt_C5-178::179-453615HMG_CoA_synt_N::HMG_CoA_synt_C45-216::217-490616GRAS176-480617Pkinase23-304618E1-E2_ATPase::Hydrolase34-255::259-545619E1-E2_ATPase225-473621Hydrolase512-930622Hydrolase457-898623FBPase66-379624FBPase13-337625FBPase68-380626FBPase63-374627Myb_DNA-binding::Myb_DNA-4-53::59-104binding628Myb_DNA-binding::Myb_DNA-4-53::59-104binding629KNOX1::KNOX2::ELK::Homeobox88-132::135-186::232-253::255-314630KNOX1::KNOX2::ELK::Homeobox65-109::117-168::205-226::228-287631KNOX1::KNOX2::ELK::Homeobox57-101::104-155::202-223::225-284632bZIP_1227-289633Myb_DNA-binding59-104634Aa_trans27-433635Aa_trans31-433636Aa_trans59-459637Sugar_tr26-487638Sugar_tr26-489639Sugar_tr29-489640Sugar_tr29-552641Sugar_tr101-535642Sugar_tr53-503643Sugar_tr47-479644MFS_140-463646Sugar_tr27-490647Sugar_tr26-488648p45035-499649WD40::WD40160-197::249-288650WD40::WD40740-779::826-863651HLH14-63652HO-ZIP_N::Homeobox::HALZ1-96::123-177::178-222654GH315-570655Oxidored_FMN10-345656Oxidored_FMN1-330657Oxidored_FMN11-342659TPR_1::TPR_278-111::112-145661TPR_2::TPR_1::TPR_1::TPR_2::2-35::36-69::70-103::253-286::287-320::328-365::392-425::TPR_1::TPR_1::TPR_1::TPR_1::426-459::460-493TPR_1662TPR_1::TPR_1::TPR_2124-157::158-191::192-225663TPR_1::TPR_1::TPR_2::U-box14-47::48-81::82-115::195-269664TPR_1::TPR_1::TPR_1::U-box16-49::50-83::84-117::197-271665SRF-TF9-59666SRF-TF::K-box9-59::69-173667SRF-TF::K-box9-59::75-174670CRAL_TRIO_N::CRAL_TRIO20-87::110-296671CRAL_TRIO_N::CRAL_TRIO1-71::90-275672CRAL_TRIO87-251673CRAL_TRIO91-264674CRAL_TRIO_N::CRAL_TRIO19-86::101-255675Methyltransf_736-369676Methyltransf_736-382677Methyltransf_738-378678FtsH_ext::AAA::Peptidase_M4177-223::249-436::443-653 TABLE 22PEP SEQID NOPfam domain namebeginstopscoreE-value340Cellulose_synt1679772072.70341AP267129130.54.20E−36341B31923001343.80E−37342AP2661281138.10E−31342B3181294124.33.30E−34343AP264126104.43.00E−28343B3177286116.19.30E−32344AP2569130.54.30E−36345AP213771313.10E−36346AP2111174102.21.40E−27346AP220326787.73.30E−23347MIP11231379.74.00E−111348Cyclin_N63195120.15.80E−33348Cyclin_C19731719.90.00099349Glyco_hydro_32N118438651.37.20E−193349Glyco_hydro_32C479601147.92.40E−41350Dicty_CAR12328−10.25.20E−06351KNOX110214690.45.10E−24351KNOX2153204101.22.90E−27351ELK242263376.00E−08351Homeobox273324−1.90.0072352CDC48_N30116134.72.30E−37352AAA2474313281.50E−95352AAA_52473798.90.00035352AAA520707344.12.10E−100353AOX55330700.51.10E−207354AOX26333421.31.30E−123355Aa_trans32471375.76.60E−110356PI3_PI4_kinase169432249.75.80E−72359FA_desaturase156400352.85.40E−103360FA_desaturase147391347.81.70E−101361FA_desaturase140384347.71.80E−101362PAS_2701862221.20E−63362GAF219404108.41.90E−29362Phytochrome415595409.15.90E−120362PAS62273796.66.70E−26362PAS752877107.44.00E−29362HisKA89795626.96.50E−05362HATPase_c1011112364.43.40E−16363PAS_270186231.61.60E−66363GAF219404108.71.60E−29363Phytochrome415595406.53.50E−119363PAS62273790.45.10E−24363PAS_462874218.40.0029363PAS75287797.53.60E−26363HisKA89795631.62.50E−06363HATPase_c1011112361.23.10E−15364PAS_2105226209.28.50E−60364GAF259442111.81.90E−30364Phytochrome453632405.19.30E−119364PAS663779117.24.40E−32364PAS_4669784190.0025364PAS794916106.76.40E−29364HisKA936100045.61.50E−10364HATPase_c1048116060.93.90E−15365PAS_2114234214.81.80E−61365GAF267449114.33.20E−31365Phytochrome4606394172.50E−122365PAS670786118.12.40E−32365PAS_467679122.50.0011365PAS80192387.63.60E−23365HisKA943100754.82.60E−13365HATPase_c1055116756.96.20E−14366PAS_268184237.82.10E−68366GAF217400119.96.80E−33366Phytochrome411591408.68.00E−120366PAS62273788.51.90E−23366PAS_462874218.50.0028366PAS75287771.91.90E−18366HisKA89896137.44.70E−08366HATPase_c1009112152.11.70E−12367PAS_267183229.37.60E−66367GAF216399119.31.00E−32367Phytochrome410590383.72.50E−112367PAS62073582.89.70E−22367PAS75087578.32.20E−20367HisKA89695938.91.60E−08367HATPase_c1007112161.91.90E−15368Linker_histone219727.11.80E−05368AT_hook9811011.40.22368AT_hook1291417.41.1368AT_hook1541668.80.65368AT_hook19220413.60.096370GFO_IDH_MocA11129167.62.90E−47370NAD_binding_3171287.50.00084370GFO_IDH_MocA_C13023644.92.50E−10371Cyclin_N54186115.81.20E−31371Cyclin_C18831423.70.00051372PAS11623022.80.0011372PAS_314123322.80.00057372PAS39050410.50.038372PAS_341550720.30.00099372Pkinase582870291.41.60E−84373Globin17157113.26.90E−31374Cyclin_N165291230.43.80E−66374Cyclin_C293413191.22.30E−54375Cyclin_N414452.41.40E−12376Cyclin_N157283241.81.40E−69376Cyclin_C285405178.31.80E−50377Cyclin_N2433702351.50E−67377Cyclin_C372499182.31.10E−51378Cyclin_N166292221.32.00E−63378Cyclin_C294415160.25.00E−45379SRF-TF9591038.00E−28379K-box6917238.71.80E−08380SRF-TF136394.53.00E−25380K-box7317830.71.10E−06381SRF-TF95999.21.10E−26381K-box7217130.31.10E−06382SRF-TF95999.21.10E−26382K-box7317138.52.20E−08383Cyclin_N244371237.72.20E−68383Cyclin_C373500188.61.40E−53384Cyclin_N104233228.81.10E−65384Cyclin_C2353631421.50E−39385Cyclin_N163289221.71.50E−63385Cyclin_C291411165.99.20E−47386Cyclin_N228354221.61.70E−63386Cyclin_C356477173.93.70E−49387Cyclin_N173299229.18.80E−66387Cyclin_C301421173.64.50E−49388Cyclin_N187312228.51.30E−65388Cyclin_C314441164.72.10E−46389Cyclin_N4719039.21.30E−08390Cyclin_N43176131.22.60E−36390Cyclin_C17829818.60.0013391Cyclin_N5518474.62.90E−19392NDK75209338.69.90E−99393NDK89223317.22.70E−92394NDK2134312.47.30E−91395NDK2135357.42.10E−104396SNF2_N560842279.94.50E−81396Helicase_C89197088.91.40E−23398NDK33170137.82.80E−38399HEAT24828414.60.33399HEAT74678218.80.019399HEAT78782427.73.90E−05399FAT14611847532.73.70E−157399PI3_PI4_kinase21182368376.44.00E−110399FATC2438247072.41.30E−18400eIF-5a86155133.74.80E−37401KOW266030.55.40E−06401eIF-5a84151151.52.10E−42402DS45377776.61.40E−230403Ribosomal_L18p26173282.57.40E−82404Orn_Arg_deC_N91326431.31.30E−126404Orn_DAP_Arg_deC329460140.44.60E−39405IBN_N299327.93.30E−05406SAM_decarbox23396657.21.20E−194407SAM_decarbox12319557.61.10E−164408SAM_decarbox12346668.35.40E−198409RB_A274475423.52.80E−124409RB_B594721245.31.20E−70410Gemini_AL19127269.65.70E−78410Gemini_AL1_M129233190.43.90E−54411Globin613369.88.00E−18411FAD_binding_615126330.43.50E−07411NAD_binding_127637319.62.50E−05412AP2468133.36.30E−37413FAE1_CUT1_RppA79367749.52.00E−222413Chal_sti_synt_C3244678.30.00033413ACP_syn_III_C38146521.38.20E−08414Cyclin_N189315212.96.80E−61414Cyclin_C317441138.91.30E−38415ABC_tran186386140.73.60E−39415ABC2_membrane503715206.46.00E−59415PDR_CDR724887213.44.70E−61415ABC_tran8981087782.70E−20415ABC2_membrane11861404179.29.60E−51416Cyclin_N66173−1.10.00017417Pkinase192993242.40E−94418Pkinase20346243.63.90E−70419PTR299507587.79.90E−174420PTR2113517353.14.20E−103421RRM_19816522.90.001421RRM_1216286339.90E−07422SET110239181.91.40E−51423HSF_DNA-bind173416227.72.30E−65424Clp_N1769339.70E−07424Clp_N9814854.72.80E−13424AAA20439853.66.00E−13424AAA_2598763366.24.70E−107424AAA_560276821.23.90E−05425Clp_N176963.37.10E−16425Clp_N9414555.22.00E−13425AAA20139547.83.30E−11425AAA_2596760383.52.90E−112425AAA_560076532.91.00E−06426Clp_N207160.35.90E−15426Clp_N9614745.31.90E−10426AAA20339750.64.80E−12426AAA_2602767377.81.50E−110426AAA_560676826.51.60E−05427Clp_N1769575.80E−14427Clp_N94145521.80E−12427AAA20139554.33.70E−13427AAA_2596763373.53.10E−109427AAA_560074831.42.90E−06428Cyclin_N4718348.71.80E−11429polyprenyl_synt37308318.98.30E−93430polyprenyl_synt45316353.82.60E−103431polyprenyl_synt473183651.10E−106432Cyclin_N5620270.93.70E−18433Cyclin_N79193575.60E−14433Cyclin_C195327−2.10.052434MtN3_slv69579.78.40E−21434MtN3_slv128214120.64.00E−33435MtN3_slv79694.52.90E−25435MtN3_slv129215127.43.70E−35436MtN3_slv87720.59.60E−05436MtN3_slv125211108.71.50E−29437PAS11122263.27.80E−16437PAS_4117227344.70E−07437PAS_313322518.80.0014437Pkinase480732264.71.70E−76437Pkinase_Tyr480732257.23.20E−74438SET86232142.51.00E−39439Response_reg1314977.92.90E−20440Response_reg1512895.31.70E−25440Myb_DNA-binding20325348.61.90E−11441Response_reg2614286.19.80E−23441CCT66069874.92.40E−19442Response_reg44160101.52.40E−27442CCT58862679.59.70E−21443Response_reg26139106.47.70E−29443Myb_DNA-binding21326351.13.50E−12444Response_reg13126104.92.20E−28444Myb_DNA-binding19724746.39.50E−11445Response_reg1013977.24.80E−20446Response_reg12135821.70E−21447Response_reg4217769.41.10E−17448Response_reg3715788.22.30E−23449Response_reg2815325.43.50E−05449CCT45749570.64.80E−18450bZIP_16412836.21.10E−07450bZIP_26411835.51.80E−07451GRAS149455424.51.30E−124452GRAS162497270.92.30E−78453WD405694421.90E−09453WD409813623.60.00065453WD4014718635.31.90E−07453WD40194234344.90E−07453WD4023927745.91.20E−10453WD4033437224.10.0004645414-3-37242490.22.30E−14445514-3-37242509.92.70E−15045614-3-39246514.98.30E−152457zf-NF-X120922719.90.0087457zf-NF-X126228127.54.30E−05457zf-NF-X131533420.60.005457zf-NF-X136938925.20.00022457zf-NF-X142344223.40.00076458TAP4230367617.51.10E−18245914-3-35241509.34.10E−150460FBPase71406486.13.90E−143461FBPase2329748.83.30E−222462FBPase_glpX2334864.16.50E−257463FBPase18341448.67.30E−132464AAA217404296.64.40E−86465S160367656.96.20E−14465S11173124545.31.90E−10465S11261133674.53.00E−19466DUF902407464117.43.70E−32466DUF906533800650.41.40E−192469CS57962.31.50E−15470FKBP_C53147201.71.60E−57470FKBP_C16926487.73.30E−23470FKBP_C286383119.21.10E−32470TPR_145248521.50.0027470TPR_148651929.89.10E−06470TPR_248651923.80.00057471TPR_253828.22.70E−05471TPR_153833.18.80E−07471TPR_1407314.10.1471TPR_27410733.76.00E−07471TPR_17410739.88.50E−09471TPR_126229516.50.053471TPR_133636927.83.60E−05471TPR_139642912.10.18471TPR_143046339.88.70E−09471TPR_243046324.40.00037471TPR_14644979.40.37472TPR_18311610.10.31472TPR_112115434.24.10E−07472TPR_212115423.30.00081473Ribonuclease_T228217341.91.00E−99474GDA1_CD399154787.73.30E−23475Acid_phosphat_A65399324.41.80E−94476Sugar_tr2251787.83.20E−23476MFS_12746478.22.40E−20477Sugar_tr2652084.33.40E−22477MFS_13046775.21.80E−19478Citrate_synt474136755.40E−200479Citrate_synt46409799.22.10E−237480Citrate_synt78455704.76.00E−209481Citrate_synt90458508.28.60E−150482Citrate_synt100468512.64.00E−151483Ferritin88233224.91.60E−64484Ferritin91236230.82.70E−66485Ferritin7144163.64.60E−46486LEA_4107933.19.00E−07486LEA_49016376.11.00E−19487HSF_DNA-bind15189226.55.40E−65488HSF_DNA-bind22224161.91.50E−45489DS44361611.19.30E−181490Carb_anhydrase75310108.71.50E−29491Carb_anhydrase38264150.25.20E−42492Mito_carr2412382.99.50E−22492Mito_carr129236101.72.00E−27492Mito_carr24733896.19.70E−26493Wzy_C31137772.11.60E−18494RNase_PH1513560.26.40E−15495DEAD331484123.94.20E−34495Helicase_C68676725.28.20E−05495DSHCT10941286378.31.10E−110496TPR_150854112.20.17496TPR_17027358.40.49496TPR_173676934.43.60E−07496TPR_273676929.51.10E−05496TPR_1122612597.90.56498RNase_PH21153152.21.30E−42498RNase_PH_C15622053.75.50E−13499GTP_EFTU26551652.81.10E−12500GTP_EFTU391619253.25.10E−73500GTP_EFTU_D264170843.28.10E−10500GTP_EFTU_D371382145.51.70E−10501TP_methylase4211321.11.80E−93502TP_methylase221432292.66.90E−85503TP_methylase120333257.42.70E−74504Asp85441−78.85.40E−09505Asp148505−71.21.90E−09506Asp139476−126.63.60E−06509Dehydrin14167241.41.70E−69510Dehydrin2528688.71.70E−23515HSP9_HSP12159150.83.40E−42519F-box176416.70.079519LRR_229932312.30.31520LRR_23894146.42520LRR_14154377.98.9520LRR_14654898.18520LRR_15685917.89.4521F-box34740.74.70E−09521FBA_1202359−34.40.0019522F-box6210840.17.00E−09522LRR_24144389.90.665232OG-FeII_Oxy158258150.34.70E−42524Aminotran_1_250438510.12.30E−150525FA_desaturase73313316.44.60E−92526Pyridoxal_deC63412151.71.70E−42527p45040480110.74.10E−30528p45044477184.22.90E−52529p4506051580.93.70E−21530p45042496111.62.20E−30531p45073511131.32.50E−36532p45041466200.14.70E−57533LRRNT_212716727.15.70E−05533LRR_119421611.32533LRR_121824017.20.055533LRR_126628813.40.78533LRR_129031217.20.055533LRR_131433611.91.6533LRR_133836016.40.098533LRR_136238419.90.0087533LRR_145848018.80.018533LRR_155157314.40.39533LRR_157559710.43533LRR_159862012.41.3533LRR_164666813.60.65533LRR_167069213.80.6533LRR_169471620.30.0065533LRR_171874112.61.1533LRR_175477695.5533LRR_17788008.27.6533LRR_182684814.10.46533LRR_185187012.11.5533LRR_187589412.61.1533LRR_192794915.10.24533LRR_195197313.70.61533Pkinase_Tyr11141396115.41.50E−31533Pkinase11141396136.47.20E−38534E2F_TDP1277115.11.90E−31534E2F_TDP1482241191.20E−32536E2F_TDP111176137.72.80E−38537Dicty_CAR14321−22.23.10E−05538Mlo649410121.90E−301539Mlo325201031.30540G-alpha12376553.42.20E−163542AP21281931405.90E−39543Aa_trans32427170.25.00E−48544Aa_trans34465480.51.90E−141545AT_hook15116311.60.21545AT_hook2142269.70.45545AT_hook29430610.80.29545AT_hook32433611.90.19545YDG_SRA397548198.31.70E−56545Pre-SET5756751469.00E−41545SET677830196.56.00E−56546GRAS146452451.59.80E−133547MAT1141931.11.10E−07548Cystatin48135100.35.50E−27549Cystatin49137682.80E−17549Cystatin15624718.90.0033550Cystatin1410462.11.60E−15552PI3_PI4_kinase172437231.71.50E−66553DS47363592.44.00E−175554GRAS2175214911.30E−144555GRAS165471427.71.50E−125556UQ_con20159187.82.50E−53557UPF0016984102.11.60E−27557UPF0016145220111.72.00E−30558AAA212399308.61.10E−89558AAA_521234780.0004559CS58159.88.00E−15560CS199538.22.60E−08561CS58167.34.60E−17562CS58063.85.00E−16563Metallophos4425574.53.20E−19564Metallophos5025981.13.20E−21565Ribonuclease_T223245252.48.60E−73566Ribonuclease_T2392472105.20E−60567Ribonuclease_T23021593.27.00E−25568Ribonuclease_T228217341.91.00E−99569HLH196862.51.30E−15571RNase_PH29169100.25.60E−27571RNase_PH_C19926520.70.004957214-3-33240509.73.00E−15057314-3-38245508.76.20E−150574IF4E5206413.13.70E−121575IF4E6227480.91.40E−141576IF4E72103851.10E−112577IF4E1220424.81.10E−124579GRAS154464462.74.30E−136580Catalase18401955.42.00E−284581Catalase18402954.15.00E−284582peroxidase17224241.81.40E−69583GDI14381048.30584GDI14521080.80585Rho_GDI3524592.51.20E−24586Copper-bind361324.50.00038586Cu_bind_like47125137.24.10E−38587Cu_bind_like42120113.65.20E−31588Cu_bind_like42120149.29.80E−42589Cu_bind_like4510558.12.60E−14590Cu_bind_like3912155.81.30E−13591ADH_zinc_N160307113.74.80E−31592ADH_zinc_N152299101.72.00E−27593ADH_zinc_N165314109.87.10E−30594ADH_N3311574.63.00E−19594ADH_zinc_N146290124.13.70E−34595Abhydrolase_117541261.42.60E−15596Hexapep658213.80.57596Hexapep9110814.10.48596Hexapep1171348.911596Hexapep135152140.49597Redoxin616157.93.00E−14597AhpC-TSA7185368.31.10E−107598Redoxin416043.75.90E−10598AhpC-TSA5182347.81.60E−101599Redoxin5021029.41.20E−05599AhpC-TSA51233380.81.90E−111600Redoxin4176172.41.10E−48601Redoxin6822456.67.50E−14601AhpC-TSA69248400.81.90E−117602Redoxin6821197.34.40E−26602AhpC-TSA70211−5.35.70E−11603HSP20134240137.92.50E−38604HSP2077181153.26.40E−43605HSP208518230.75.10E−07606HSP2060163175.89.70E−50607HSP20501531851.70E−52609OPT104758686.81.50E−203610Xan_ur_permease35432176.94.60E−50611Xan_ur_permease38445188.81.20E−53612F-box5711232.11.90E−06612Tub123480632.14.50E−187613Tub1251393.23.50E−115614HMG_CoA_synt_N5178338.31.20E−98614HMG_CoA_synt_C179453549.92.40E−162615HMG_CoA_synt_N452164264.80E−125615HMG_CoA_synt_C217490622.43.50E−184616GRAS176480418.11.10E−122617Pkinase233043381.50E−98618E1-E2_ATPase34255306.83.50E−89618Hydrolase259545682.80E−17619E1-E2_ATPase225473−52.81.50E−06621Hydrolase51293019.10.0013622Hydrolase45789826.96.40E−05623FBPase66379554.78.80E−164624FBPase13337691.46.10E−205625FBPase68380555.93.70E−164626FBPase63374513.62.10E−151627Myb_DNA-binding45339.79.50E−09627Myb_DNA-binding5910439.31.30E−08628Myb_DNA-binding453452.30E−10628Myb_DNA-binding5910439.61.00E−08629KNOX18813290.35.40E−24629KNOX2135186102.89.20E−28629ELK232253376.10E−08629Homeobox255314−0.20.0048630KNOX165109975.30E−26630KNOX2117168118.41.90E−32630ELK20522629.88.60E−06630Homeobox2282875.70.0012631KNOX15710181.62.30E−21631KNOX210415594.72.60E−25631ELK202223307.60E−06631Homeobox2252841.80.003632bZIP_222527926.58.50E−05632bZIP_122728929.21.40E−05633Myb_DNA-binding5910458.32.30E−14634Aa_trans27433475.65.50E−140635Aa_trans31433508.56.80E−150636Aa_trans59459295.77.90E−86637Sugar_tr264875656.80E−167637MFS_13044879.41.00E−20638MFS_12145089.59.40E−24638Sugar_tr26489611.37.90E−181639Sugar_tr29489392.17.60E−115639MFS_13344975.61.40E−19640Sugar_tr29552421.51.10E−123640MFS_13351190.83.90E−24641Sugar_tr101535347.71.80E−101641MFS_110549480.93.60E−21642Sugar_tr53503427.71.50E−125642MFS_157462125.41.50E−34643Sugar_tr47479287.42.60E−83643MFS_152439775.60E−20644Sugar_tr37468−46.31.90E−05644MFS_14046326.41.80E−05646Sugar_tr27490468.67.10E−138646MFS_13344786.57.80E−23647Sugar_tr26488522.34.70E−154647MFS_14144561.13.30E−15648p450354993104.00E−90649WD4016019727.35.10E−05649WD4024928833.18.90E−07650WD4074077935.71.50E−07650WD4082686330.74.80E−06651HLH146360.26.30E−15652HD-ZIP_N196151.22.60E−42652Homeobox12317765.21.90E−16652HALZ17822286.11.00E−22654GH3155701262.50655Oxidored_FMN10345295.21.10E−85656Oxidored_FMN1330262.86.30E−76657Oxidored_FMN113423329.60E−97659TPR_17811122.50.0014659TPR_111214522.30.0016659TPR_211214522.50.0014661TPR_223530.94.20E−06661TPR_123529.11.40E−05661TPR_136699.30.39661TPR_270103344.70E−07661TPR_17010337.34.80E−08661TPR_225328627.83.50E−05661TPR_125328627.15.70E−05661TPR_2287320210.0038661TPR_128732028.81.80E−05661TPR_132836511.30.22661TPR_239242527.25.30E−05661TPR_139242533.75.90E−07661TPR_242645923.40.00074661TPR_142645934.24.20E−07661TPR_246049324.80.00029661TPR_146049335.61.60E−07662TPR_112415714.20.099662TPR_115819126.49.40E−05662TPR_119222516.20.058662TPR_219222521.30.0033663TPR_1144722.20.0017663TPR_2144720.60.0053663TPR_2488123.30.00078663TPR_1488133.18.90E−07663TPR_18211512.80.15663TPR_28211521.10.0036663U-box195269132.51.10E−36664TPR_1164923.20.00086664TPR_2164920.70.005664TPR_1508329.31.30E−05664TPR_18411711.90.19664U-box197271125.91.00E−34665SRF-TF95980.26.00E−21666SRF-TF95992.51.20E−24666K-box6917331.29.50E−07667SRF-TF959120.83.60E−33667K-box75174154.82.00E−43670CRAL_TRIO_N20871191.30E−32670CRAL_TRIO110296350.52.60E−102671CRAL_TRIO_N17130.94.20E−06671CRAL_TRIO9027525.87.70E−08672CRAL_TRIO87251652.20E−16673CRAL_TRIO9126488.51.90E−23674CRAL_TRIO_N1986282.30E−05674CRAL_TRIO10125568.71.70E−17675Methyltransf_736369629.72.40E−186676Methyltransf_736382371.99.00E−109677Methyltransf_7383783842.10E−112678FtsH_ext772231374.70E−38678AAA249436336.63.90E−98678AAA_52493845.90.00059678Peptidase_M414436533996.30E−117 TABLE 23Pfam domainAccessionGatheringnamenumbercutoffDomain description14-3-3PF00244.92514-3-3 protein2OG-FeII_OxyPF03171.1011.52OG-Fe(II) oxygenase superfamilyAAAPF00004.1912.3ATPase family associated with various cellular activities (AAA)AAA_2PF07724.3−5ATPase family associated with various cellular activities (AAA)AAA_5PF07728.44ATPase family associated with various cellular activities (AAA)ABC2_membranePF01061.13−17.9ABC-2 type transporterABC_tranPF00005.169.5ABC transporterACP_syn_III_CPF08541.1−24.43-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminalADH_NPF08240.2−14.5Alcohol dehydrogenase GroES-like domainADH_zinc_NPF00107.1623.8Zinc-binding dehydrogenaseAOXPF01786.825Alternative oxidaseAP2PF00847.100AP2 domainAT_hookPF02178.83.6AT hook motifAa_transPF01490.7−128.4Transmembrane amino acid transporter proteinAbhydrolase_1PF00561.1010.3alpha/beta hydrolase foldAcid_phosphat_APF00328.12−64.5Histidine acid phosphataseAhpC-TSAPF00578.10−92.2AhpC/TSA familyAminotran_1_2PF00155.11−57.5Aminotransferase class I and IIAspPF00026.13−153.8Eukaryotic aspartyl proteaseB3PF02362.1226.5B3 DNA binding domainCCTPF06203.425CCT motifCDC48_NPF02359.8−2Cell division protein 48 (CDC48), N-terminal domainCRAL_TRIOPF00650.9−26CRAL/TRIO domainCRAL_TRIO_NPF03765.416CRAL/TRIO, N-terminusCSPF04969.68.6CS domainCarb_anhydrasePF00194.10−105Eukaryotic-type carbonic anhydraseCatalasePF00199.9−229CatalaseCellulose_syntPF03552.4−257.9Cellulose synthaseChal_sti_synt_CPF02797.5−6.1Chalcone and stilbene synthases, C-terminal domainCitrate_syntPF00285.11−101.5Citrate synthaseClp_NPF02861.100Clp amino terminal domainCopper-bindPF00127.10−7.7Copper binding proteins, plastocyanin/azurin familyCu_bind_likePF02298.7−16.4Plastocyanin-like domainCyclin_CPF02984.9−13Cyclin, C-terminal domainCyclin_NPF00134.13−14.7Cyclin, N-terminal domainCystatinPF00031.1117.5Cystatin domainDEADPF00270.187.2DEAD/DEAH box helicaseDSPF01916.7−95.2Deoxyhypusine synthaseDSHCTPF08148.1−86.9DSHCT (NUC185) domainDUF902PF06001.225Domain of Unknown Function (DUF902)DUF906PF06010.125Domain of Unknown Function (DUF906)DehydrinPF00257.10−4.4DehydrinDicty_CARPF05462.2−39.7Slime mold cyclic AMP receptorE1-E2_ATPasePF00122.9−84E1-E2 ATPaseE2F_TDPPF02319.1117E2F/DP family winged-helix DNA-binding domainELKPF03789.325ELK domainF-boxPF00646.2213.8F-box domainFAD_binding_6PF00970.13−11.4Oxidoreductase FAD-binding domainFAE1_CUT1_RppAPF08392.2−192.7FAE1/Type III polyketide synthase-like proteinFATPF02259.12275FAT domainFATCPF02260.920FATC domainFA_desaturasePF00487.14−46Fatty acid desaturaseFBA_1PF07734.2−39.4F-box associatedFBPasePF00316.10−170.3Fructose-1-6-bisphosphataseFBPase_glpXPF03320.4−198.1Bacterial fructose-1,6-bisphosphatase, glpX-encodedFKBP_CPF00254.17−7.6FKBP-type peptidyl-prolyl cis-trans isomeraseFerritinPF00210.14−10Ferritin-like domainFtsH_extPF06480.425FtsH ExtracellularG-alphaPF00503.9−230G-protein alpha subunitGAFPF01590.1523GAF domainGDA1_CD39PF01150.7−183GDA1/CD39 (nucleoside phosphatase) familyGDIPF00996.8−285.8GDP dissociation inhibitorGFO_IDH_MocAPF01408.12−4.4Oxidoreductase family, NAD-binding Rossmann foldGFO_IDH_MocA_CPF02894.76Oxidoreductase family, C-terminal alpha/beta domainGH3PF03321.3−336GH3 auxin-responsive promoterGRASPF03514.5−78GRAS family transcription factorGTP_EFTUPF00009.168Elongation factor Tu GTP binding domainGTP_EFTU_D2PF03144.1525Elongation factor Tu domain 2GTP_EFTU_D3PF03143.614.3Elongation factor Tu C-terminal domainGemini_AL1PF00799.10−38.7Geminivirus Rep catalytic domainGemini_AL1_MPF08283.1−3Geminivirus rep protein central domainGlobinPF00042.11−8.8GlobinGlyco_hydro_32CPF08244.28.8Glycosyl hydrolases family 32 C terminalGlyco_hydro_32NPF00251.10−197Glycosyl hydrolases family 32 N terminalHALZPF02183.717Homeobox associated leucine zipperHATPase_cPF02518.1522.4Histidine kinase-, DNA gyrase B-, and HSP90-like ATPaseHD-ZIP_NPF04618.225HD-ZIP protein N terminusHEATPF02985.1111.5HEAT repeatHLHPF00010.158.2Helix-loop-helix DNA-binding domainHMG_CoA_synt_CPF08540.1−158.1Hydroxymethylglutaryl-coenzyme A synthase C terminalHMG_CoA_synt_NPF01154.8−6.2Hydroxymethylglutaryl-coenzyme A synthase N terminalHSF_DNA-bindPF00447.7−70HSF-type DNA-bindingHSP20PF00011.1013Hsp20/alpha crystallin familyHSP9_HSP12PF04119.225Heat shock protein 9/12Helicase_CPF00271.202.1Helicase conserved C-terminal domainHexapepPF00132.130.3Bacterial transferase hexapeptide (three repeats)HisKAPF00512.1410.3His Kinase A (phosphoacceptor) domainHomeoboxPF00046.18−4.1Homeobox domainHydrolasePF00702.1513.6haloacid dehalogenase-like hydrolaseIBN_NPF03810.921.9Importin-beta N-terminal domainIF4EPF01652.8−35Eukaryotic initiation factor 4EK-boxPF01486.70K-box regionKNOX1PF03790.325KNOX1 domainKNOX2PF03791.325KNOX2 domainKOWPF00467.1829.1KOW motifLEA_4PF02987.60Late embryogenesis abundant proteinLRRNT_2PF08263.318.6Leucine rich repeat N-terminal domainLRR_1PF00560.227.7Leucine Rich RepeatLRR_2PF07723.26Leucine Rich RepeatLinker_histonePF00538.8−8linker histone H1 and H5 familyMAT1PF06391.2−55.1CDK-activating kinase assembly factor MAT1MFS_1PF07690.623.5Major Facilitator SuperfamilyMIPPF00230.10−62Major intrinsic proteinMetallophosPF00149.1822Calcineurin-like phosphoesteraseMethyltransf_7PF03492.525SAM dependent carboxyl methyltransferaseMito_carrPF00153.160Mitochondrial carrier proteinMloPF03094.5−263Mlo familyMtN3_slvPF03083.59.7MtN3/saliva familyMyb_DNA-bindingPF00249.2014Myb-like DNA-binding domainNAD_binding_1PF00175.11−3.9Oxidoreductase NAD-binding domainNAD_binding_3PF03447.6−1.7Homoserine dehydrogenase, NAD binding domainNDKPF00334.9−59.9Nucleoside diphosphate kinaseOPTPF03169.6−238.6OPT oligopeptide transporter proteinOrn_Arg_deC_NPF02784.7−76Pyridoxal-dependent decarboxylase, pyridoxal binding domainOrn_DAP_Arg_deCPF00278.126.7Pyridoxal-dependent decarboxylase, C-terminal sheet domainOxidored_FMNPF00724.9−147.7NADH: flavin oxidoreductase/NADH oxidase familyPASPF00989.130PAS foldPAS_2PF08446.1−2.1PAS foldPAS_3PF08447.113.4PAS foldPAS_4PF08448.116.4PAS foldPDR_CDRPF06422.2−51.8CDR ABC transporterPI3_PI4_kinasePF00454.1614.8Phosphatidylinositol 3- and 4-kinasePTR2PF00854.12−50POT familyPeptidase_M41PF01434.8−139.8Peptidase family M41PhytochromePF00360.913Phytochrome regionPkinasePF00069.15−70.3Protein kinase domainPkinase_TyrPF07714.665Protein tyrosine kinasePre-SETPF05033.53.9Pre-SET motifPyridoxal_deCPF00282.9−158.6Pyridoxal-dependent decarboxylase conserved domainRB_APF01858.7−65.3Retinoblastoma-associated protein A domainRB_BPF01857.9−48.7Retinoblastoma-associated protein B domainRNase_PHPF01138.1043′ exoribonuclease family, domain 1RNase_PH_CPF03725.4203′ exoribonuclease family, domain 2RRM_1PF00076.1217.7RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)RedoxinPF08534.1−1RedoxinResponse_regPF00072.134Response regulator receiver domainRho_GDIPF02115.6−55RHO protein GDP dissociation inhibitorRibonuclease_T2PF00445.8−53Ribonuclease T2 familyRibosomal_L18pPF00861.1225Ribosomal L18p/L5e familyS1PF00575.1316.8S1 RNA binding domainSAM_decarboxPF01536.6−154Adenosylmethionine decarboxylaseSETPF00856.1723.5SET domainSNF2_NPF00176.13−72SNF2 family N-terminal domainSRF-TFPF00319.811SRF-type transcription factor (DNA-binding and dimerisation domain)Sugar_trPF00083.14−85Sugar (and other) transporterTAP42PF04177.325TAP42-like familyTPR_1PF00515.177.7Tetratricopeptide repeatTPR_2PF07719.620.1Tetratricopeptide repeatTP_methylasePF00590.10−38Tetrapyrrole (Corrin/Porphyrin) MethylasesTubPF01167.7−98Tub familyU-boxPF04564.6−7.6U-box domainUPF0016PF01169.825Uncharacterized protein family UPF0016UQ_conPF00179.16−30Ubiquitin-conjugating enzymeWD40PF00400.2121.5WD domain, G-beta repeatWzy_CPF04932.425O-Antigen PolymeraseXan_ur_permeasePF00860.11−151.2Permease familyYDG_SRAPF02182.725YDG/SRA domainbZIP_1PF00170.1124.5bZIP transcription factorbZIP_2PF07716.515Basic region leucine zippereIF-5aPF01287.99.6Eukaryotic initiation factor 5A hypusine, DNA-binding OB foldp450PF00067.11−105Cytochrome P450peroxidasePF00141.12−10Peroxidasepolyprenyl_syntPF00348.8−43Polyprenyl synthetasezf-NF-X1PF01422.73NF-X1 type zinc finger Example 9 Selection of Transgenic Plants with Enhanced Agronomic Trait(s) This example illustrates the preparation and identification by selection of transgenic seeds and plants derived from transgenic plant cells of this invention where the plants and seed are identified by screening for a transgenic plant having an enhanced agronomic trait imparted by expression of a protein selected from the group including the homologous proteins identified in Example 6. Transgenic plant cells of corn, soybean, cotton, canola, alfalfa, wheat and rice are transformed with recombinant DNA for expressing each of the homologs identified in Example 6. Plants are regenerated from the transformed plant cells and used to produce progeny plants and seed that are screened for enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil. Plants are identified exhibiting enhanced traits imparted by expression of the homologous proteins.","lang":"en","source":"USPTO_FULLTEXT","data_format":"ORIGINAL"}},"description_lang":["en"],"has_description":true,"has_docdb":true,"has_inpadoc":true,"has_full_text":true,"biblio_lang":"en"},"jurisdiction":"US","collections":[],"usersTags":[],"lensId":"074-200-153-449-070","publicationKey":"US_2009_0158452_A1","displayKey":"US 2009/0158452 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RICHARD G","valueNormalised":"Johnson Richard G"},"inventorship":null},{"name":{"value":"MADSON LINDA L","valueNormalised":"Madson Linda L"},"inventorship":null},{"name":{"value":"EDGERTON MICHAEL D","valueNormalised":"Edgerton Michael D"},"inventorship":null},{"name":{"value":"BELL ERIN","valueNormalised":"Bell Erin"},"inventorship":null},{"name":{"value":"DEIKMAN JILL","valueNormalised":"Deikman Jill"},"inventorship":null}],"inventorships":[],"unmatchedInventorships":[],"activeUserHasInventorship":false},"simpleFamilyId":217682622,"citesPatentCount":11,"countrySpec":{"countryName":"USA","description":"FIRST PUBLISHED PATENT APPLICATION [FROM 2001 ONWARDS]","rule":"pubdate:AFTER:15-03-2001","docType":"PATENT_APPLICATION"},"pageTitle":"US 2009/0158452 A1 - Transgenic plants with enhanced agronomic traits","documentTitle":"Transgenic plants with enhanced agronomic traits"},"claims":{"source":"xml_claims","claims":[{"lines":["A plant cell nucleus with stably integrated, recombinant DNA, wherein\n
a. said recombinant DNA comprises a promoter that is functional in said plant cell and that is operably linked to a protein coding DNA encoding a protein having an amino acid sequence comprising a Pfam domain module selected from the group consisting of bZIP—1, AOX, DUF902::DUF906, LRRNT—2::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1::LRR—1:: LRR—1::LRR—1::LRR—1::Pkinase, ABC_tran::ABC2_membrane::PDR_CDR::ABC_tran::ABC2_membrane, Redoxin, RNase_PH::RNase_PH_C, AAA, GFO_IDH_MocA::GFO_IDH_MocA_C, GRAS, Metallophos, Ribosomal_L18p, Sugar_tr, CDC48_N::AAA::AAA, Pkinase, PAS—3::PAS—3::Pkinase, CRAL_TRIO_N::CRAL_TRIO, p450, RRM—1::RRM—1, SRF-TF, G-alpha, TPR—1::TPR—1, FAE1_CUT1_RppA::ACP_syn_III_C, Globin::FAD_binding 6::NAD_binding 1, TPR—1::TPR—2, IF4E, F-box::LRR—2, FBPase, LRR—2::LRR—1::LRR—1::LRR—1, HSF_DNA-bind, Dehydrin, TP_methylase, Response_reg:: Myb_DNA-binding, KNOX1::KNOX2:: ELK::Homeobox, Catalase, GTP_EFTU::GTP_EFTU_D2::GTP_EFTU_D3, TPR—1::TPR—1::TPR—1::TPR—1, ADH_zinc_N, Globin, CS, GH3, HLH, Ribonuclease_T2, TPR—1::TPR—1::TPR—1::U-box, Dicty_CAR, Cyclin_N::Cyclin_C, MFS—1, Acid_phosphat_A, Methyltransf—7, TPR—1::TPR—1::TPR—2, IBN_N, polyprenyl_synt, AhpC-TSA, Oxidored_FMN, Hydrolase, DS, Response_reg::CCT, Aa_trans, peroxidase, E1-E2_ATPase, F-box::Tub, Response_reg, Rho_GDI, E2F_TDP, 14-3-3, AT_hook::AT_hook::AT_hook::AT_hook::YDG_SRA::Pre-SET::SET, Tub, KOW::eIF-5a, MtN3_slv::MtN3_slv, GTP_EFTU, UQ_con, MAT1, E2F_TDP::E2F_TDP, HEAT::HEAT::HEAT::FAT::PI3_PI4_kinase::FATC, HMG_CoA_synt_N::HMG_CoA_synt_C, TAP42, DEAD::Helicase_C::DSHCT, NDK, Clp_N::Clp_N::AAA:AAA—2, Cyclin_N, OPT, Orn_Arg_deC_N::Orn_DAP_Arg_deC, PAS::Pkinase, FtsH_ext::AAA::Peptidase_M41, Wzy_C, Mlo, AP2::B3, SET, FKBP_C::FKBP_C::FKBP_C::TPR—1::TPR—1, TPR—2::TPR—1::TPR—1::TPR—2::TPR—1::TPR—1::TPR—1::TPR—1::TPR—1, Pyridoxal_deC, RNase_PH, RB_A::RB_B, WD40::WD40::WD40::WD40::WD40::WD40, SNF2_N::Helicase_C, Aminotran—1—2, Gemini_AL1:: Gemini_AL1_M, Hexapep::Hexapep::Hexapep::Hexapep, AP2::AP2, Abhydrolase—1, PAS—2::GAF::Phytochrome::PAS::PAS::HisKA::HATPase_c, Cystatin::Cystatin, Pfam module annoation, Cystatin, F-box::FBA—1, 2OG-FeII_Oxy, FA_desaturase, HSP20, FBPase_glpX, E1-E2_ATPase::Hydrolase, Mito_carr::Mito_carr::Mito_carr, Cellulose_synt, Linker_histone::AT_hook::AT_hook::AT_hook::AT_hook, UPF0016::UPF0016, GDI, Glyco_hydro—32N::Glyco_hydro—32C, TPR—1::TPR—1::TPR—2::U-box, ADH_N::ADH_zinc_N, GDA1_CD39, MIP, CRAL_TRIO, TPR—1::TPR—1::TPR—1::TPR—1::TPR—1::TPR—1::TPR—1::TPR—1, LEA—4::LEA—4, Carb_anhydrase, PTR2, Cu_bind_like, HD-ZIP_N::Homeobox::HALZ, eIF-5a, Asp, S1::S1::S1, SAM_decarbox, WD40::WD40, Citrate_synt, SRF-TF::K-box, HSP9_HSP12, PI3_PI4_kinase, Ferritin, Xan_ur_permease, Myb_DNA-binding::Myb_DNA-binding, zf-NF-X1::zf-NF-X1::zf-NF-X1::zf-NF-X1::zf-NF-X1, AP2, and Myb_DNA-binding;\n
b. said recombinant DNA comprises a promoter that is functional in said plant cell and that is operably linked to a protein coding DNA encoding a protein comprising an amino acid sequence with at least 90% identity to a consensus amino acid sequence selected from the group consisting of SEQ ID NO: 24153 through SEQ ID NO: 24174;\n
c. said recombinant DNA comprises a promoter that is functional in plant cells and that is operably linked to a protein coding DNA encoding a protein comprising an amino acid sequence selected from the group consisting of 467, 507, 517, 535, 620, and homologs thereof listed in table 7; or\n
d. said recombinant DNA comprises a promoter that is functional in said plant cell and that is operably linked to a protein coding recombinant DNA encoding a protein having an amino acid sequence having at least 70% identity to an amino acid sequence selected from the group consisting of 511 and 513;\n
and wherein said plant cell nucleus is selected by screening a population of transgenic plants that have said recombinant DNA and an enhanced trait as compared to control plants that do not have said recombinant DNA in their nuclei; and wherein said enhanced trait is selected from group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, enhanced heat tolerance, enhanced resistance to salt exposure, enhanced shade tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil."],"number":1,"annotation":false,"claim":true,"title":false},{"lines":["The plant cell nucleus of claim 1 wherein said protein coding DNA encodes a protein having an amino acid sequence selected from the group consisting of SEQ ID NO: 340 through SEQ ID NO: 24149."],"number":2,"annotation":false,"claim":true,"title":false},{"lines":["The plant cell nucleus of claim 1 further comprising DNA expressing a protein that provides tolerance from exposure to an herbicide applied at levels that are lethal to a wild type of said plant cell."],"number":3,"annotation":false,"claim":true,"title":false},{"lines":["The plant cell nucleus of claim 3 wherein the agent of said herbicide is a glyphosate, dicamba, or glufosinate compound."],"number":4,"annotation":false,"claim":true,"title":false},{"lines":["A transgenic plant cell or plant comprising a plurality of plant cells with the plant cell nucleus of claim 1."],"number":5,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant cell or plant of claim 5 which is homozygous for said recombinant DNA."],"number":6,"annotation":false,"claim":true,"title":false},{"lines":["A transgenic seed comprising a plurality of plant cells with the plant cell nucleus of claim 1."],"number":7,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic seed of claim 7 from a corn, soybean, cotton, canola, alfalfa, wheat or rice plant."],"number":8,"annotation":false,"claim":true,"title":false},{"lines":["A transgenic pollen grain comprising a haploid derivative of the plant cell nucleus of claim 1."],"number":9,"annotation":false,"claim":true,"title":false},{"lines":["A method for manufacturing non-natural, transgenic seed of claim 7 that can be used to produce a crop of transgenic plants with an enhanced trait resulting from expression of stably-integrated recombinant DNA wherein said method for manufacturing said transgenic seed comprising:\n
(a) screening a population of plants for said enhanced trait and said recombinant DNA wherein individual plants in said population can exhibit said trait at a level less than, essentially the same as or greater than the level that said trait is exhibited in control plants which do not express the recombinant DNA, wherein said enhanced trait is selected from the group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, enhanced heat tolerance, enhanced resistance to salt exposure, enhanced shade tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil,\n
(b) selecting from said population one or more plants that exhibit said trait at a level greater than the level that said trait is exhibited in control plants, and\n
(c) collecting seed from selected plants selected from step b."],"number":10,"annotation":false,"claim":true,"title":false},{"lines":["The method of claim 10 further comprising\n
(d) verifying that said recombinant DNA is stably integrated in said selected plants, and\n
(e) analyzing tissue of said selected plant to determine the expression or suppression of a gene that encodes an protein having the function of a protein having an amino acid sequence selected from the group consisting of one of SEQ ID NO:340-678."],"number":11,"annotation":false,"claim":true,"title":false},{"lines":["A method of producing hybrid corn seed comprising:\n
(a) acquiring hybrid corn seed from a herbicide tolerant corn plant which also has stably-integrated, recombinant DNA in a nucleus of claim 1;\n
(b) producing corn plants from said hybrid corn seed, wherein a fraction of the plants produced from said hybrid corn seed is homozygous for said recombinant DNA, a fraction of the plants produced from said hybrid corn seed is hemizygous for said recombinant DNA, and a fraction of the plants produced from said hybrid corn seed has none of said recombinant DNA;\n
(c) selecting corn plants which are homozygous and hemizygous for said recombinant DNA by treating with an herbicide;\n
(d) collecting seed from herbicide-treated-surviving corn plants and planting said seed to produce further progeny corn plants;\n
(e) repeating steps (c) and (d) at least once to produce an inbred corn line; and\n
(f) crossing said inbred corn line with a second corn line to produce hybrid seed."],"number":12,"annotation":false,"claim":true,"title":false},{"lines":["A plant cell nucleus with stably integrated, recombinant DNA, wherein\n
a. said recombinant DNA comprises a promoter that is functional in said plant cell and that is operably linked to a protein coding DNA encoding a protein having an amino acid sequence comprising a Pfam domain module selected from the group consisting of FBPase, Cyclin_N::Cyclin_C, FA_desaturase, and FBPase_glpX; and wherein said plant cell nucleus is selected by screening a population of transgenic plants that have said recombinant DNA and an enhanced trait as compared to control plants that do not have said recombinant DNA in their nuclei; and wherein said enhanced trait is selected from group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil."],"number":13,"annotation":false,"claim":true,"title":false},{"lines":["The plant cell nucleus of claim 13 wherein said protein coding DNA encodes a protein having an amino acid sequence selected from the group consisting of SEQ ID NO: 385, 462, 463, and 525."],"number":14,"annotation":false,"claim":true,"title":false},{"lines":["A transgenic plant cell or plant comprising a plurality of plant cells with the plant cell nucleus of claim 13."],"number":15,"annotation":false,"claim":true,"title":false},{"lines":["The transgenic plant cell or plant of claim 15 which is homozygous for said recombinant DNA."],"number":16,"annotation":false,"claim":true,"title":false},{"lines":["A transgenic seed comprising a plurality of plant cells with the plant cell nucleus of claim 13."],"number":17,"annotation":false,"claim":true,"title":false},{"lines":["A transgenic seed of claim 17 which is collected from a plant that is selected as having enhanced water use efficiency."],"number":18,"annotation":false,"claim":true,"title":false},{"lines":["A method for manufacturing non-natural, transgenic seed of claim 17 that can be used to produce a crop of transgenic plants with an enhanced trait resulting from expression of stably-integrated recombinant DNA wherein said method for manufacturing said transgenic seed comprising:\n
(a) screening a population of plants for said enhanced trait and said recombinant DNA wherein individual plants in said population can exhibit said trait at a level less than, essentially the same as or greater than the level that said trait is exhibited in control plants which do not express the recombinant DNA, wherein said enhanced trait is selected from the group of enhanced traits consisting of enhanced water use efficiency, enhanced cold tolerance, enhanced heat tolerance, enhanced resistance to salt exposure, enhanced shade tolerance, increased yield, enhanced nitrogen use efficiency, enhanced seed protein and enhanced seed oil,\n
(b) selecting from said population one or more plants that exhibit said trait at a level greater than the level that said trait is exhibited in control plants, and\n
(c) collecting seed from selected plants selected from step b."],"number":19,"annotation":false,"claim":true,"title":false},{"lines":["A method of producing hybrid corn seed comprising:\n
(a) acquiring hybrid corn seed from a herbicide tolerant corn plant which also has stably-integrated, recombinant DNA in a nucleus of claim 13;\n
(b) producing corn plants from said hybrid corn seed, wherein a fraction of the plants produced from said hybrid corn seed is homozygous for said recombinant DNA, a fraction of the plants produced from said hybrid corn seed is hemizygous for said recombinant DNA, and a fraction of the plants produced from said hybrid corn seed has none of said recombinant DNA;\n
(c) selecting corn plants which are homozygous and hemizygous for said recombinant DNA by treating with an herbicide;\n
(d) collecting seed from herbicide-treated-surviving corn plants and planting said seed to produce further progeny corn plants;\n
(e) repeating steps (c) and (d) at least once to produce an inbred corn line; and\n
(f) crossing said inbred corn line with a second corn line to produce hybrid seed."],"number":20,"annotation":false,"claim":true,"title":false}]}},"filters":{"npl":[],"notNpl":[],"applicant":[],"notApplicant":[],"inventor":[],"notInventor":[],"owner":[],"notOwner":[],"tags":[],"dates":[],"types":[],"notTypes":[],"j":[],"notJ":[],"fj":[],"notFj":[],"classIpcr":[],"notClassIpcr":[],"classNat":[],"notClassNat":[],"classCpc":[],"notClassCpc":[],"so":[],"notSo":[],"sat":[]},"sequenceFilters":{"s":"SEQIDNO","d":"ASCENDING","p":0,"n":10,"sp":[],"si":[],"len":[],"t":[],"loc":[]}}