Transcriptional Regulator Nucleic Acids, Polypeptides And Methods Of Use Thereof

  • Published: Nov 14, 2002
  • Earliest Priority: Dec 06 2000
  • Family: 11
  • Cited Works: 0
  • Cited by: 1
  • Cites: 0
  • Sequences: 41
  • Additional Info: Full text
Data obtained from: USPTO Fulltext
41 sequences found in this patent (in total)

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Download sequences in fasta format: 10 peptides 31 DNAs

Displaying 31 - 40 of 41 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
31
Length
167
Sequence Type
peptide
Locations
Claims, Summary
Declared organism
Oryza sativa
Determined organism
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:218199663
      EEC82090
    • Hit length
      2,275 aa
    • E Value
      5.45E-78
    • BLAST Score
      294.3 bits
    • Similarity
      99.29%
    • Coverage
      83.83%
    • Alignment (schematic)

      SEQ ID NO 31
      83.83% cov
      EEC82090
      6.15% cov
    • Alignment Length
      140 aa
    • CIGAR string
      27H130MN7M2N mismatches: 3 - insertions: 0 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115472215
      NP_001059706
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      306 aa
    • E Value
      2.27E-77
    • BLAST Score
      292.4 bits
    • Similarity
      99.29%
    • Coverage
      83.83%
    • Alignment (schematic)

      SEQ ID NO 31
      83.83% cov
      NP_001059706
      45.75% cov
    • Alignment Length
      140 aa
    • CIGAR string
      27H130MN7M2N mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
32
Length
23
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
33
Length
23
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
34
Length
667
Sequence Type
DNA
Locations
Claims
Declared organism
Triticum aestivum
Determined organism
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:151427001
      AK249050
    • Hit length
      2,493 bp
    • E Value
      0E0
    • BLAST Score
      896.7 bits
    • Similarity
      93.46%
    • Coverage
      88.61%
    • Alignment (schematic)

      SEQ ID NO 34
      88.61% cov
      AK249050
      24.51% cov
    • Alignment Length
      612 bp
    • CIGAR string
      156MN56MN101MN20MN21MI22MI5MD16MN10MI8MN17MI3MN4MI3MN52MN5M2IMI8MN5MI8MNMI7MIMNMI3MNMI3MN2MI2MIMN4MI2MNMNI6MNMI5MI2MI4MI4M76H mismatches: 18 - insertions: 21 - deletions: 1
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115472212
      NM_001066240
      1 of 4 hits reported for Oryza sativa Japonica Group.
    • Hit length
      5,003 bp
    • E Value
      4.19E-176
    • BLAST Score
      627.1 bits
    • Similarity
      87.66%
    • Coverage
      80.81%
    • Alignment (schematic)

      SEQ ID NO 34
      80.81% cov
      NM_001066240
      10.95% cov
    • Alignment Length
      551 bp
    • CIGAR string
      2H10MN2MN8MN20MN2MN9MN4MN23MN14MN2MN5MN3MN5MN25MN2MN5MN17MN8MN9MN10MN2MN5MN2MN14MN3MN56MN4MN4M2N2MN14MN9MNMN2MN11MN9MNMI5MN5MN8MI5MD9MN6MNMN8MN2MI12MN10MI3MN4MI14MN8MN3MNM2N6MIMD5MN5MN5MN5M2IMI8MD3MI2MI10MNI6M126H mismatches: 53 - insertions: 12 - deletions: 3
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242045707
      XM_002460680
    • Hit length
      1,845 bp
    • E Value
      1.52E-170
    • BLAST Score
      608.7 bits
    • Similarity
      86.98%
    • Coverage
      81.11%
    • Alignment (schematic)

      SEQ ID NO 34
      81.11% cov
      XM_002460680
      29.81% cov
    • Alignment Length
      553 bp
Occurrence
11 times in PatSeqDB
Tools
SEQ ID NO
35
Length
214
Sequence Type
peptide
Locations
Claims, Summary
Declared organism
Triticum aestivum
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
36
Length
23
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:151427001
      AK249050
    • Hit length
      2,493 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 36
      100% cov
      AK249050
      0.92% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium knowlesi strain H

    Plasmodium knowlesi strain H

    • Public DB hit
      GI:221062028
      XM_002262548
      1 of 2 hits reported for Plasmodium knowlesi strain H.
    • Hit length
      4,584 bp
    • E Value
      2.09E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      95.65%
    • Alignment (schematic)

      SEQ ID NO 36
      95.65% cov
      XM_002262548
      0.48% cov
    • Alignment Length
      22 bp
    • CIGAR string
      1H11MN10M mismatches: 1 - insertions: 0 - deletions: 0
  • Schistosoma mansoni

    Schistosoma mansoni

    • Public DB hit
      GI:227287456
      FN357877
    • Hit length
      303,396 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 36
      91.3% cov
      FN357877
      0.01% cov
    • Alignment Length
      21 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:50253634
      AC133156
    • Hit length
      151,577 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 36
      91.3% cov
      AC133156
      0.01% cov
    • Alignment Length
      21 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
37
Length
23
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
38
Length
941
Sequence Type
DNA
Locations
Claims
Declared organism
Zea mays
Determined organism
  • Zea mays

    Zea mays

    • Public DB hit
      GI:54653636
      BT018855
    • Hit length
      1,942 bp
    • E Value
      0E0
    • BLAST Score
      1,674.2 bits
    • Similarity
      99.46%
    • Coverage
      97.87%
    • Alignment (schematic)

      SEQ ID NO 38
      97.87% cov
      BT018855
      47.48% cov
    • Alignment Length
      922 bp
    • CIGAR string
      20H394MI27MN2MN45MN278MN171M mismatches: 4 - insertions: 1 - deletions: 0
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242040920
      XM_002467810
    • Hit length
      4,916 bp
    • E Value
      0E0
    • BLAST Score
      1,376.9 bits
    • Similarity
      93.58%
    • Coverage
      97.56%
    • Alignment (schematic)

      SEQ ID NO 38
      97.56% cov
      XM_002467810
      18.98% cov
    • Alignment Length
      934 bp
    • CIGAR string
      20H11MN26MN9MN13MN83MN11MN2MN32MN5MN8M2N124MN56MN8MN44MN23MN65MN26MN16M2N44MN26MIM2IMNIM2I2MNMIM2I9MN5MN38MN22M2N15MN6MN5MIM2I3MNMN10MN10MN8MI3MD3MN4MN48MN13MIMIMNMIMN4MN4MNMN12MN6M3H mismatches: 43 - insertions: 16 - deletions: 1
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
39
Length
514
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Glycine max
Determined organism
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225432403
      XM_002276871
    • Hit length
      10,389 bp
    • E Value
      2.7E-112
    • BLAST Score
      414.8 bits
    • Similarity
      82.44%
    • Coverage
      93.39%
    • Alignment (schematic)

      SEQ ID NO 39
      93.39% cov
      XM_002276871
      4.58% cov
    • Alignment Length
      484 bp
    • CIGAR string
      34H4MD2MD5MN2MN4MD7MN2MN2MN2MN5MN3MD2N3MN2MNM2N2MN11MN2M2N19MN5MN2MN2MN2MN2MN9MI2MDN14MN28MN2MN5MN8MN5M2N4MN2MN2MN2MN2MDMI7MN2MN17MN8MN2MN2MN2MN5MD2MNMI10MN2MN2MN11MN8MN17MN2MN2MN2MN2MN14MN5MN2MN2MN2MN2MN10MN9M2N2MNMN26MN2MN2MN3MI2MN5MNM2N3MDMN2MN20M mismatches: 73 - insertions: 4 - deletions: 8
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
40
Length
403
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Glycine max
Determined organism
Occurrence
5 times in PatSeqDB
Tools

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