Transcriptional Regulator Nucleic Acids, Polypeptides And Methods Of Use Thereof

  • Published: Nov 14, 2002
  • Earliest Priority: Dec 06 2000
  • Family: 11
  • Cited Works: 0
  • Cited by: 1
  • Cites: 0
  • Sequences: 41
  • Additional Info: Full text
Data obtained from: USPTO Fulltext
41 sequences found in this patent (in total)

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Displaying 21 - 30 of 41 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
21
Length
23
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
22
Length
23
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
  • Caenorhabditis remanei

    Caenorhabditis remanei

    • Public DB hit
      GI:308473678
      XM_003099015
    • Hit length
      2,976 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 22
      91.3% cov
      XM_003099015
      0.71% cov
    • Alignment Length
      21 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
23
Length
61
Sequence Type
peptide
Locations
Claims, Summary
Declared organism
Glycine max
Determined organism
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224108163
      XP_002314744
    • Hit length
      752 aa
    • E Value
      1.56E-23
    • BLAST Score
      113.2 bits
    • Similarity
      86.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 23
      100% cov
      XP_002314744
      8.11% cov
    • Alignment Length
      61 aa
    • CIGAR string
      2M6N10MN4MN10MN9MN13MNMN mismatches: 12 - insertions: 0 - deletions: 0
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:297738311
      CBI27512
    • Hit length
      728 aa
    • E Value
      2.74E-23
    • BLAST Score
      112.5 bits
    • Similarity
      86.67%
    • Coverage
      98.36%
    • Alignment (schematic)

      SEQ ID NO 23
      98.36% cov
      CBI27512
      8.24% cov
    • Alignment Length
      60 aa
    • CIGAR string
      2M6N11M2N2MN4MN15MN5MNMN7M1H mismatches: 13 - insertions: 0 - deletions: 0
  • Eutrema halophilum

    Eutrema halophilum

    • Public DB hit
      GI:229914880
      ACQ90605
    • Hit length
      768 aa
    • E Value
      3.9E-23
    • BLAST Score
      112.1 bits
    • Similarity
      85.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 23
      100% cov
      ACQ90605
      7.94% cov
    • Alignment Length
      61 aa
    • CIGAR string
      2M6N9MN2MN2MN19M2N5MN7MN2M mismatches: 13 - insertions: 0 - deletions: 0
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255561731
      XP_002521875
    • Hit length
      756 aa
    • E Value
      3.93E-23
    • BLAST Score
      112.1 bits
    • Similarity
      85.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 23
      100% cov
      XP_002521875
      8.07% cov
    • Alignment Length
      61 aa
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:218195384
      EEC77811
    • Hit length
      909 aa
    • E Value
      1.82E-22
    • BLAST Score
      109.8 bits
    • Similarity
      86.67%
    • Coverage
      98.36%
    • Alignment (schematic)

      SEQ ID NO 23
      98.36% cov
      EEC77811
      6.6% cov
    • Alignment Length
      60 aa
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:38344264
      CAE02069
      1 of 3 hits reported for Oryza sativa Japonica Group.
    • Hit length
      863 aa
    • E Value
      1.82E-22
    • BLAST Score
      109.8 bits
    • Similarity
      86.67%
    • Coverage
      98.36%
    • Alignment (schematic)

      SEQ ID NO 23
      98.36% cov
      CAE02069
      6.95% cov
    • Alignment Length
      60 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297814462
      XP_002875114
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      764 aa
    • E Value
      5.72E-22
    • BLAST Score
      108.2 bits
    • Similarity
      83.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 23
      100% cov
      XP_002875114
      7.98% cov
    • Alignment Length
      61 aa
  • Eutrema parvulum

    Eutrema parvulum

    • Public DB hit
      GI:312190395
      ADQ43195
    • Hit length
      763 aa
    • E Value
      5.72E-22
    • BLAST Score
      108.2 bits
    • Similarity
      83.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 23
      100% cov
      ADQ43195
      7.99% cov
    • Alignment Length
      61 aa
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15226870
      NP_178318
    • Hit length
      763 aa
    • E Value
      5.77E-22
    • BLAST Score
      108.2 bits
    • Similarity
      83.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 23
      100% cov
      NP_178318
      7.99% cov
    • Alignment Length
      61 aa
  • Physcomitrella patens

    Physcomitrella patens

    • Public DB hit
      GI:168053884
      XP_001779364
    • Hit length
      719 aa
    • E Value
      1.27E-17
    • BLAST Score
      94 bits
    • Similarity
      77.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 23
      100% cov
      XP_001779364
      8.48% cov
    • Alignment Length
      61 aa
  • Selaginella moellendorffii

    Selaginella moellendorffii

    • Public DB hit
      GI:302753248
      XP_002960048
      1 of 4 hits reported for Selaginella moellendorffii.
    • Hit length
      551 aa
    • E Value
      7.55E-16
    • BLAST Score
      87.8 bits
    • Similarity
      77.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 23
      100% cov
      XP_002960048
      11.07% cov
    • Alignment Length
      61 aa
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
24
Length
23
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
  • Neospora caninum Liverpool

    Neospora caninum Liverpool

    • Public DB hit
      GI:325113944
      FR823380
    • Hit length
      2,288,409 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 24
      91.3% cov
      FR823380
      0% cov
    • Alignment Length
      21 bp
  • Bordetella petrii

    Bordetella petrii

    • Public DB hit
      GI:163258032
      AM902716
    • Hit length
      5,287,950 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 24
      91.3% cov
      AM902716
      0% cov
    • Alignment Length
      21 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:38371907
      AC102652
    • Hit length
      229,752 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 24
      91.3% cov
      AC102652
      0.01% cov
    • Alignment Length
      21 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
25
Length
25
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:16418274
      AC022463
    • Hit length
      190,080 bp
    • E Value
      7.95E-1
    • BLAST Score
      38.2 bits
    • Similarity
      95.65%
    • Coverage
      92%
    • Alignment (schematic)

      SEQ ID NO 25
      92% cov
      AC022463
      0.01% cov
    • Alignment Length
      23 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
26
Length
522
Sequence Type
DNA
Locations
Claims
Declared organism
Oryza sativa
Determined organism
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:151420366
      AK251718
    • Hit length
      2,724 bp
    • E Value
      0E0
    • BLAST Score
      835.8 bits
    • Similarity
      95.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 26
      100% cov
      AK251718
      19.6% cov
    • Alignment Length
      534 bp
    • CIGAR string
      95MN11MN95MN19MN14MN55MI23MN4MN23MN10MI3MI15MI2MNMN21MN46MN13MN6MI4MI5MI8MI6MI5MI12MNI8MI4M mismatches: 14 - insertions: 12 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
27
Length
171
Sequence Type
peptide
Locations
Claims, Summary
Declared organism
Oryza sativa
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242094948
      XP_002437964
    • Hit length
      1,147 aa
    • E Value
      1.17E-40
    • BLAST Score
      170.2 bits
    • Similarity
      85.58%
    • Coverage
      60.82%
    • Alignment (schematic)

      SEQ ID NO 27
      60.82% cov
      XP_002437964
      8.89% cov
    • Alignment Length
      104 aa
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
28
Length
23
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:151420366
      AK251718
    • Hit length
      2,724 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 28
      100% cov
      AK251718
      0.84% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • uncultured eukaryote

    uncultured eukaryote

    • Public DB hit
      GI:238251740
      FJ995896
    • Hit length
      213 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 28
      91.3% cov
      FJ995896
      9.86% cov
    • Alignment Length
      21 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
29
Length
23
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
30
Length
510
Sequence Type
DNA
Locations
Claims
Declared organism
Oryza sativa
Determined organism
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115472214
      NM_001066241
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,326 bp
    • E Value
      0E0
    • BLAST Score
      918.9 bits
    • Similarity
      99.6%
    • Coverage
      98.82%
    • Alignment (schematic)

      SEQ ID NO 30
      98.82% cov
      NM_001066241
      37.93% cov
    • Alignment Length
      504 bp
    • CIGAR string
      6H466MN22MD14M mismatches: 1 - insertions: 0 - deletions: 1
Occurrence
5 times in PatSeqDB
Tools

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