Transcriptional Regulator Nucleic Acids, Polypeptides And Methods Of Use Thereof

  • Published: Nov 14, 2002
  • Earliest Priority: Dec 06 2000
  • Family: 11
  • Cited Works: 0
  • Cited by: 1
  • Cites: 0
  • Sequences: 41
  • Additional Info: Full text
Data obtained from: USPTO Fulltext
41 sequences found in this patent (in total)

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Displaying 11 - 20 of 41 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
11
Length
21
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226531236
      NM_001148393
      1 of 2 hits reported for Zea mays.
    • Hit length
      1,713 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 11
      100% cov
      NM_001148393
      1.23% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
12
Length
1,463
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Zea mays
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242057380
      XM_002457791
    • Hit length
      3,679 bp
    • E Value
      0E0
    • BLAST Score
      2,394.4 bits
    • Similarity
      96.61%
    • Coverage
      98.63%
    • Alignment (schematic)

      SEQ ID NO 12
      98.63% cov
      XM_002457791
      39.14% cov
    • Alignment Length
      1,444 bp
    • CIGAR string
      17H35MN2MN41MN15MNMN29MN29MN2MN104MN6MN49MN2MN23MN2MN29MN17MN9MNMN5MN14MN5MN2MN167MN27MN26MD2MI9MN7MN26MN56MN59MN5MN8MN86MN8MN11MN43MD34MD5MNMD5MN101MN149MN2MN27MN7MN2MN59MN24MN17M3H mismatches: 44 - insertions: 1 - deletions: 4
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115436571
      NM_001049579
      1 of 4 hits reported for Oryza sativa Japonica Group.
    • Hit length
      3,749 bp
    • E Value
      0E0
    • BLAST Score
      1,768.4 bits
    • Similarity
      88.82%
    • Coverage
      98.63%
    • Alignment (schematic)

      SEQ ID NO 12
      98.63% cov
      NM_001049579
      38.41% cov
    • Alignment Length
      1,449 bp
    • CIGAR string
      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 mismatches: 147 - insertions: 6 - deletions: 9
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
13
Length
486
Sequence Type
peptide
Locations
Claims
Declared organism
Zea mays
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242057381
      XP_002457836
    • Hit length
      1,070 aa
    • E Value
      0E0
    • BLAST Score
      930.6 bits
    • Similarity
      96.88%
    • Coverage
      98.97%
    • Alignment (schematic)

      SEQ ID NO 13
      98.97% cov
      XP_002457836
      44.86% cov
    • Alignment Length
      481 aa
    • CIGAR string
      5H32MN104MN75MN67MN52MD4NM7N128MN5M mismatches: 16 - insertions: 0 - deletions: 1
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:218188229
      EEC70656
      1 of 2 hits reported for Oryza sativa Indica Group.
    • Hit length
      1,259 aa
    • E Value
      0E0
    • BLAST Score
      919.1 bits
    • Similarity
      96.67%
    • Coverage
      98.97%
    • Alignment (schematic)

      SEQ ID NO 13
      98.97% cov
      EEC70656
      38.13% cov
    • Alignment Length
      481 aa
    • CIGAR string
      5H8MN22M2NMN50MN51MN75MN17MN49MN52MD4NM7N93MN8MNMN3MN19MN5M mismatches: 25 - insertions: 0 - deletions: 1
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115436572
      NP_001043044
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,107 aa
    • E Value
      0E0
    • BLAST Score
      917.1 bits
    • Similarity
      96.67%
    • Coverage
      98.97%
    • Alignment (schematic)

      SEQ ID NO 13
      98.97% cov
      NP_001043044
      43.36% cov
    • Alignment Length
      481 aa
    • CIGAR string
      5H8MN22M2NMN50MN51MN75MN17MN49MN52MD4NM7N93MN8MNMN3MN19MN5M mismatches: 25 - insertions: 0 - deletions: 1
  • Oryza sativa

    Oryza sativa

    • Public DB hit
      GI:14091823
      AAK53826
    • Hit length
      1,122 aa
    • E Value
      0E0
    • BLAST Score
      907.5 bits
    • Similarity
      93.75%
    • Coverage
      98.97%
    • Alignment (schematic)

      SEQ ID NO 13
      98.97% cov
      AAK53826
      44.12% cov
    • Alignment Length
      496 aa
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255551667
      XP_002516879
    • Hit length
      1,064 aa
    • E Value
      0E0
    • BLAST Score
      894.8 bits
    • Similarity
      95.01%
    • Coverage
      98.97%
    • Alignment (schematic)

      SEQ ID NO 13
      98.97% cov
      XP_002516879
      45.11% cov
    • Alignment Length
      481 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225432366
      XP_002275787
    • Hit length
      1,080 aa
    • E Value
      0E0
    • BLAST Score
      888.6 bits
    • Similarity
      95.01%
    • Coverage
      98.97%
    • Alignment (schematic)

      SEQ ID NO 13
      98.97% cov
      XP_002275787
      44.44% cov
    • Alignment Length
      481 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224110590
      XP_002315568
    • Hit length
      1,050 aa
    • E Value
      0E0
    • BLAST Score
      887.5 bits
    • Similarity
      94.59%
    • Coverage
      98.97%
    • Alignment (schematic)

      SEQ ID NO 13
      98.97% cov
      XP_002315568
      45.71% cov
    • Alignment Length
      481 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297829170
      XP_002882467
    • Hit length
      1,055 aa
    • E Value
      0E0
    • BLAST Score
      876.3 bits
    • Similarity
      94.81%
    • Coverage
      98.97%
    • Alignment (schematic)

      SEQ ID NO 13
      98.97% cov
      XP_002882467
      45.59% cov
    • Alignment Length
      482 aa
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:334185133
      NP_001189827
      1 of 5 hits reported for Arabidopsis thaliana.
    • Hit length
      1,056 aa
    • E Value
      0E0
    • BLAST Score
      875.5 bits
    • Similarity
      94.81%
    • Coverage
      98.97%
    • Alignment (schematic)

      SEQ ID NO 13
      98.97% cov
      NP_001189827
      45.55% cov
    • Alignment Length
      482 aa
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
14
Length
23
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242057380
      XM_002457791
    • Hit length
      3,679 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      XM_002457791
      0.63% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115436571
      NM_001049579
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      3,749 bp
    • E Value
      5.3E-1
    • BLAST Score
      38.2 bits
    • Similarity
      95.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 14
      100% cov
      NM_001049579
      0.61% cov
    • Alignment Length
      23 bp
    • CIGAR string
      9MN13M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
15
Length
23
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242057380
      XM_002457791
      1 of 2 hits reported for Sorghum bicolor.
    • Hit length
      3,679 bp
    • E Value
      5.3E-1
    • BLAST Score
      38.2 bits
    • Similarity
      95.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 15
      100% cov
      XM_002457791
      0.63% cov
    • Alignment Length
      23 bp
    • CIGAR string
      16MN6M mismatches: 1 - insertions: 0 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115436571
      NM_001049579
      1 of 7 hits reported for Oryza sativa Japonica Group.
    • Hit length
      3,749 bp
    • E Value
      5.3E-1
    • BLAST Score
      38.2 bits
    • Similarity
      95.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 15
      100% cov
      NM_001049579
      0.61% cov
    • Alignment Length
      23 bp
    • CIGAR string
      16MN6M mismatches: 1 - insertions: 0 - deletions: 0
  • Oryza sativa

    Oryza sativa

    • Public DB hit
      GI:6041757
      AC011806
    • Hit length
      105,198 bp
    • E Value
      5.3E-1
    • BLAST Score
      38.2 bits
    • Similarity
      95.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 15
      100% cov
      AC011806
      0.02% cov
    • Alignment Length
      23 bp
  • Zea mays

    Zea mays

    • Public DB hit
      GI:21206770
      AY103692
    • Hit length
      1,536 bp
    • E Value
      5.3E-1
    • BLAST Score
      38.2 bits
    • Similarity
      95.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 15
      100% cov
      AY103692
      1.5% cov
    • Alignment Length
      23 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
16
Length
1,645
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Zea mays
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242089492
      XM_002440534
    • Hit length
      3,675 bp
    • E Value
      0E0
    • BLAST Score
      2,183.9 bits
    • Similarity
      90.89%
    • Coverage
      99.15%
    • Alignment (schematic)

      SEQ ID NO 16
      99.15% cov
      XM_002440534
      44.22% cov
    • Alignment Length
      1,636 bp
    • CIGAR string
      14H4MI2MD9MN3MN10MN8MN8MN5MN5MN2MN17MN2MN5MN17MN8MN35MN20M2N40MN26M2NMN98MN7MN4MN5MNIMD35MN5MN2MN14MN8MN14MN11MN11MN2MN32M2N23MN10MN2MN5MN3MN7MN9MN10MN53MN30MN34MN2MN5MN5MN14MN2MN5MN32MN17MN23MN5MN5MN5MN14MN5MN17M2N4MN5MN5MN23MN23MN2MN17MN20MN8MN2MN8MN8MN14MN5MN5MN2MN8M2N3MDMI12MN34MNMI2MNMD26MN8MN20MNDMDMD3MN3D4MN5MN3MN16MN9MN6MNMN3MN55MN2MN14MIMD2MN5M3N9M2N4MNMN8MN2M2N5MNMN10M2NMN18MNMN6MN17MN2MN11M2N7MN38MN5MN26MN2MN17MN17MN13MN15MN2MN3MN10MN8MN12M mismatches: 133 - insertions: 5 - deletions: 11
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226531236
      NM_001148393
    • Hit length
      1,713 bp
    • E Value
      0E0
    • BLAST Score
      1,919.8 bits
    • Similarity
      89.52%
    • Coverage
      92.46%
    • Alignment (schematic)

      SEQ ID NO 16
      92.46% cov
      NM_001148393
      88.44% cov
    • Alignment Length
      1,527 bp
    • CIGAR string
      124H44MN20MN3MN14MN22MN14MN11M2NMN14MN26MN26MN29MN7MN4MN5MNIMD11MN23MN8MN2MN5MN5MN8MN2MN11MN11MN11MN2MN29MN3MN23MNMN17MN3MN7MN20MN38MN14MN30MN4MN17MN11MN2MN5MN5MN14MN2MN5MN8MN23MN17MN23MN5MN5MN20MN2MN2MN2MN14M2N4MN5MN5MN11MN11MN23MN2MN17MN20MN2MN5MN2MN8MN8MN14MN2MN8MN2MN8MN4MDMI12MN34MNMI2MNMD26MN8MN11MN2MN5MNDMDMD3MN3D4MN5MN15MN4MN9MN2MN3MNMN3MN25MN8MN23MN14MN3MN5M2N5MDMI3MDMI4MNI2MD7MN2M2N7MN10M2NMN15MN2MNMN6MN14MN2MNM2N8MN2M2N4MN2MN38MN5MN11MN14MN2MN2MN8MN5MN17MN5MN7MN15MN8MN8MNMN6MN3MN8M mismatches: 142 - insertions: 6 - deletions: 12
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115462048
      NM_001061159
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      3,738 bp
    • E Value
      0E0
    • BLAST Score
      1,613.2 bits
    • Similarity
      85.2%
    • Coverage
      96.23%
    • Alignment (schematic)

      SEQ ID NO 16
      96.23% cov
      NM_001061159
      42.19% cov
    • Alignment Length
      1,595 bp
    • CIGAR string
      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 mismatches: 206 - insertions: 12 - deletions: 18
  • Triticum aestivum

    Triticum aestivum

    • Public DB hit
      GI:241988235
      AK335493
    • Hit length
      3,801 bp
    • E Value
      0E0
    • BLAST Score
      1,363.9 bits
    • Similarity
      82.27%
    • Coverage
      97.99%
    • Alignment (schematic)

      SEQ ID NO 16
      97.99% cov
      AK335493
      42.49% cov
    • Alignment Length
      1,647 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
17
Length
547
Sequence Type
peptide
Locations
Claims
Declared organism
Zea mays
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242089493
      XP_002440579
    • Hit length
      1,127 aa
    • E Value
      0E0
    • BLAST Score
      1,012.3 bits
    • Similarity
      97.05%
    • Coverage
      99.09%
    • Alignment (schematic)

      SEQ ID NO 17
      99.09% cov
      XP_002440579
      47.91% cov
    • Alignment Length
      542 aa
    • CIGAR string
      5HMN79MN35MNMNMN70MN31MN128MN4MN11MN20M2N2DMNMN6MN5MN25M3NMN3MN6MNMN3M2N6MN13MN38MN4MN4MN2MN9M mismatches: 31 - insertions: 0 - deletions: 2
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115462049
      NP_001054624
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,128 aa
    • E Value
      0E0
    • BLAST Score
      917.9 bits
    • Similarity
      91.91%
    • Coverage
      99.27%
    • Alignment (schematic)

      SEQ ID NO 17
      99.27% cov
      NP_001054624
      47.96% cov
    • Alignment Length
      544 aa
    • CIGAR string
      4H2MN47MN31MN28M3NMN2MNM3N29MN4MN32MN2MN5MN25MN4MN128MN10M2N4MN3MNMN10M2D2M2NM2N3M2NM5N19MNM3N2M3NMN2MN2MN3MNMNMIM3N5MN2M2NMN2MN2MNM2N2MNMN11MN3MN3M2N2MN2MDMN7MN6MNMN7M2NM mismatches: 71 - insertions: 1 - deletions: 3
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:125550816
      EAY96525
    • Hit length
      1,088 aa
    • E Value
      0E0
    • BLAST Score
      843.6 bits
    • Similarity
      89.41%
    • Coverage
      96.53%
    • Alignment (schematic)

      SEQ ID NO 17
      96.53% cov
      EAY96525
      48.35% cov
    • Alignment Length
      529 aa
    • CIGAR string
      19HM5NM6N2M8N12MN31MN28M3NMN2MNM3N29MN4MN32MN2MN3MNMN25MN4MN128MN10M2N4MN3MNMN10M2D2M2NM2N3M2NM5N19MNM3N2M3NMN2MN2MN3MNMNMIM3N5MN2M2NM2NMN2MNM2N2MNMN11MN3MN3M2N5MDMN7MN6MNMN7M2NM mismatches: 90 - insertions: 1 - deletions: 3
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226531237
      NP_001141865
    • Hit length
      444 aa
    • E Value
      0E0
    • BLAST Score
      801.2 bits
    • Similarity
      96.64%
    • Coverage
      81.54%
    • Alignment (schematic)

      SEQ ID NO 17
      81.54% cov
      NP_001141865
      100% cov
    • Alignment Length
      446 aa
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255552319
      XP_002517204
    • Hit length
      1,079 aa
    • E Value
      0E0
    • BLAST Score
      699.1 bits
    • Similarity
      77.11%
    • Coverage
      96.16%
    • Alignment (schematic)

      SEQ ID NO 17
      96.16% cov
      XP_002517204
      50.14% cov
    • Alignment Length
      546 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225432582
      XP_002281240
      1 of 2 hits reported for Vitis vinifera.
    • Hit length
      1,103 aa
    • E Value
      0E0
    • BLAST Score
      698.7 bits
    • Similarity
      77.59%
    • Coverage
      96.16%
    • Alignment (schematic)

      SEQ ID NO 17
      96.16% cov
      XP_002281240
      48.14% cov
    • Alignment Length
      540 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297833338
      XP_002884551
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      1,130 aa
    • E Value
      0E0
    • BLAST Score
      679.9 bits
    • Similarity
      84.02%
    • Coverage
      87.2%
    • Alignment (schematic)

      SEQ ID NO 17
      87.2% cov
      XP_002884551
      42.3% cov
    • Alignment Length
      482 aa
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:334185118
      NP_187252
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      1,102 aa
    • E Value
      0E0
    • BLAST Score
      676.4 bits
    • Similarity
      83.4%
    • Coverage
      87.2%
    • Alignment (schematic)

      SEQ ID NO 17
      87.2% cov
      NP_187252
      43.47% cov
    • Alignment Length
      482 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224111230
      XP_002315787
      1 of 2 hits reported for Populus trichocarpa.
    • Hit length
      1,132 aa
    • E Value
      0E0
    • BLAST Score
      672.9 bits
    • Similarity
      76.78%
    • Coverage
      96.16%
    • Alignment (schematic)

      SEQ ID NO 17
      96.16% cov
      XP_002315787
      47.79% cov
    • Alignment Length
      547 aa
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
18
Length
23
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
  • Nectria haematococca mpVI 77-13-4

    Nectria haematococca mpVI 77-13-4

    • Public DB hit
      GI:302913004
      XM_003050777
      1 of 2 hits reported for Nectria haematococca mpVI 77-13-4.
    • Hit length
      4,545 bp
    • E Value
      2.09E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      95.65%
    • Alignment (schematic)

      SEQ ID NO 18
      95.65% cov
      XM_003050777
      0.48% cov
    • Alignment Length
      22 bp
    • CIGAR string
      12MN9M1H mismatches: 1 - insertions: 0 - deletions: 0
  • Xenopus (Silurana) tropicalis

    Xenopus (Silurana) tropicalis

    • Public DB hit
      GI:301614707
      XM_002936776
      1 of 3 hits reported for Xenopus (Silurana) tropicalis.
    • Hit length
      4,408 bp
    • E Value
      2.09E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      95.65%
    • Alignment (schematic)

      SEQ ID NO 18
      95.65% cov
      XM_002936776
      0.5% cov
    • Alignment Length
      22 bp
    • CIGAR string
      11MN10M1H mismatches: 1 - insertions: 0 - deletions: 0
  • Aspergillus nidulans FGSC A4

    Aspergillus nidulans FGSC A4

    • Public DB hit
      GI:67523658
      XM_654797
      1 of 3 hits reported for Aspergillus nidulans FGSC A4.
    • Hit length
      4,839 bp
    • E Value
      2.09E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      95.65%
    • Alignment (schematic)

      SEQ ID NO 18
      95.65% cov
      XM_654797
      0.45% cov
    • Alignment Length
      22 bp
    • CIGAR string
      5MN16M1H mismatches: 1 - insertions: 0 - deletions: 0
  • Aspergillus clavatus NRRL 1

    Aspergillus clavatus NRRL 1

    • Public DB hit
      GI:121714456
      XM_001274838
      1 of 2 hits reported for Aspergillus clavatus NRRL 1.
    • Hit length
      3,666 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 18
      91.3% cov
      XM_001274838
      0.57% cov
    • Alignment Length
      21 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
19
Length
23
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
  • Zea mays

    Zea mays

    • Public DB hit
      GI:21209891
      AY106813
      1 of 2 hits reported for Zea mays.
    • Hit length
      1,270 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 19
      100% cov
      AY106813
      1.81% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Drosophila pseudoobscura pseudoobscura

    Drosophila pseudoobscura pseudoobscura

    • Public DB hit
      GI:198474411
      XM_001356637
      1 of 2 hits reported for Drosophila pseudoobscura pseudoobscura.
    • Hit length
      9,441 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 19
      91.3% cov
      XM_001356637
      0.22% cov
    • Alignment Length
      21 bp
  • Drosophila persimilis

    Drosophila persimilis

    • Public DB hit
      GI:195147981
      XM_002014917
      1 of 2 hits reported for Drosophila persimilis.
    • Hit length
      4,977 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 19
      91.3% cov
      XM_002014917
      0.42% cov
    • Alignment Length
      21 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
20
Length
169
Sequence Type
peptide
Locations
Claims, Summary
Declared organism
Glycine max
Determined organism
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:297736923
      CBI26124
      1 of 2 hits reported for Vitis vinifera.
    • Hit length
      2,266 aa
    • E Value
      6.81E-74
    • BLAST Score
      280.8 bits
    • Similarity
      87.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      CBI26124
      7.37% cov
    • Alignment Length
      169 aa
    • CIGAR string
      5M2N2DM6NM10N2MN6MN39MN5MN17M2N26MN4MN4MN3M2N25M mismatches: 29 - insertions: 0 - deletions: 2
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255551623
      XP_002516857
    • Hit length
      3,502 aa
    • E Value
      3.86E-73
    • BLAST Score
      278.1 bits
    • Similarity
      85.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      XP_002516857
      4.77% cov
    • Alignment Length
      169 aa
    • CIGAR string
      5M2N2DM6NM11N3MN4MN42MN2MN44M2N4MN4MN16MN13M mismatches: 28 - insertions: 0 - deletions: 2
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224100259
      XP_002311805
      1 of 2 hits reported for Populus trichocarpa.
    • Hit length
      3,427 aa
    • E Value
      1.41E-71
    • BLAST Score
      273.1 bits
    • Similarity
      83.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      XP_002311805
      5.02% cov
    • Alignment Length
      174 aa
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:20197603
      AAD29835
      1 of 9 hits reported for Arabidopsis thaliana.
    • Hit length
      3,571 aa
    • E Value
      6.17E-69
    • BLAST Score
      264.2 bits
    • Similarity
      86.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      AAD29835
      4.59% cov
    • Alignment Length
      169 aa
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:52076407
      BAD45237
    • Hit length
      3,389 aa
    • E Value
      1E-65
    • BLAST Score
      253.4 bits
    • Similarity
      81.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      BAD45237
      4.93% cov
    • Alignment Length
      169 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297826111
      XP_002880938
    • Hit length
      3,451 aa
    • E Value
      2.2E-64
    • BLAST Score
      249.2 bits
    • Similarity
      87.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      XP_002880938
      4.84% cov
    • Alignment Length
      169 aa
  • Selaginella moellendorffii

    Selaginella moellendorffii

    • Public DB hit
      GI:302803051
      XP_002983279
      1 of 2 hits reported for Selaginella moellendorffii.
    • Hit length
      3,497 aa
    • E Value
      2.87E-59
    • BLAST Score
      232.3 bits
    • Similarity
      78.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 20
      100% cov
      XP_002983279
      4.78% cov
    • Alignment Length
      169 aa
Occurrence
6 times in PatSeqDB
Tools

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