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Search for Biological Sequences disclosed in Patents

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Data obtained from: EPO Sequence Listings
339 sequences found in this patent (in total)

Displaying 1 - 10 of 339 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,260
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP002729
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP002516
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      AP012030
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP002185
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      AM946981
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      FN649414
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      AP010960
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      AP010958
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      AP010953
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP000819
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP001665
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP001396
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218359353
      CU928160
    • Hit length
      4,700,560 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CU928160
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CU928145
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella boydii CDC 3083-94

    Shigella boydii CDC 3083-94

    • Public DB hit
      GI:187427012
      CP001063
    • Hit length
      4,615,997 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP001063
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP000948
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157076741
      CP000800
    • Hit length
      4,979,619 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP000800
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP000802
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      AP009048
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      U00096
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H1152MN3M60H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli SE11

    Escherichia coli SE11

    • Public DB hit
      GI:209910450
      AP009240
    • Hit length
      4,887,515 bp
    • E Value
      0E0
    • BLAST Score
      2,124.8 bits
    • Similarity
      99.83%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      AP009240
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H398MN753MN3M60H mismatches: 2 - insertions: 0 - deletions: 0
  • Escherichia coli LW1655F+

    Escherichia coli LW1655F+

    • Public DB hit
      GI:73671285
      AY616586
    • Hit length
      18,331 bp
    • E Value
      0E0
    • BLAST Score
      2,124.8 bits
    • Similarity
      99.83%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      AY616586
      6.31% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H299MN852MN3M60H mismatches: 2 - insertions: 0 - deletions: 0
  • Shigella sonnei Ss046

    Shigella sonnei Ss046

    • Public DB hit
      GI:73854091
      CP000038
    • Hit length
      4,825,265 bp
    • E Value
      0E0
    • BLAST Score
      2,119.2 bits
    • Similarity
      99.74%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 1
      91.75% cov
      CP000038
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      44H98MN592MN460MN3M60H mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
1,260
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP002729
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP002516
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      AP012030
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP002185
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      AM946981
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      FN649414
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      AP010960
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      AP010958
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      AP010953
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP000819
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP001665
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP001396
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218359353
      CU928160
    • Hit length
      4,700,560 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CU928160
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CU928145
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella boydii CDC 3083-94

    Shigella boydii CDC 3083-94

    • Public DB hit
      GI:187427012
      CP001063
    • Hit length
      4,615,997 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP001063
      0.03% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP000948
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157076741
      CP000800
    • Hit length
      4,979,619 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP000800
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP000802
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      AP009048
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      2,130.3 bits
    • Similarity
      99.91%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      U00096
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H1152MN3M46H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli SE11

    Escherichia coli SE11

    • Public DB hit
      GI:209910450
      AP009240
    • Hit length
      4,887,515 bp
    • E Value
      0E0
    • BLAST Score
      2,124.8 bits
    • Similarity
      99.83%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      AP009240
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H398MN753MN3M46H mismatches: 2 - insertions: 0 - deletions: 0
  • Escherichia coli LW1655F+

    Escherichia coli LW1655F+

    • Public DB hit
      GI:73671285
      AY616586
    • Hit length
      18,331 bp
    • E Value
      0E0
    • BLAST Score
      2,124.8 bits
    • Similarity
      99.83%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      AY616586
      6.31% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H299MN852MN3M46H mismatches: 2 - insertions: 0 - deletions: 0
  • Shigella sonnei Ss046

    Shigella sonnei Ss046

    • Public DB hit
      GI:73854091
      CP000038
    • Hit length
      4,825,265 bp
    • E Value
      0E0
    • BLAST Score
      2,119.2 bits
    • Similarity
      99.74%
    • Coverage
      91.75%
    • Alignment (schematic)

      SEQ ID NO 2
      91.75% cov
      CP000038
      0.02% cov
    • Alignment Length
      1,156 bp
    • CIGAR string
      58H98MN592MN460MN3M46H mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
2,544
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
3,350
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Broad host range vector pSCrhaB2

    Broad host range vector pSCrhaB2

    • Public DB hit
      GI:62754190
      AY917125
    • Hit length
      7,518 bp
    • E Value
      0E0
    • BLAST Score
      3,783.1 bits
    • Similarity
      100%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      AY917125
      27.24% cov
    • Alignment Length
      2,048 bp
    • CIGAR string
      42H2048M1260H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      0E0
    • BLAST Score
      3,777.5 bits
    • Similarity
      99.95%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      AP012030
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H2045MI3M1260H mismatches: 0 - insertions: 1 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      3,777.5 bits
    • Similarity
      99.95%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      CP001396
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H2045MI3M1260H mismatches: 0 - insertions: 1 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      3,777.5 bits
    • Similarity
      99.95%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      CP000948
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H2045MI3M1260H mismatches: 0 - insertions: 1 - deletions: 0
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      0E0
    • BLAST Score
      3,777.5 bits
    • Similarity
      99.95%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      CP000802
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H2045MI3M1260H mismatches: 0 - insertions: 1 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      3,777.5 bits
    • Similarity
      99.95%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      AP009048
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H2045MI3M1260H mismatches: 0 - insertions: 1 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
      1 of 2 hits reported for Escherichia coli str. K-12 substr. MG1655.
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      3,777.5 bits
    • Similarity
      99.95%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      U00096
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H2045MI3M1260H mismatches: 0 - insertions: 1 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      0E0
    • BLAST Score
      3,772 bits
    • Similarity
      99.9%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      FN649414
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H1043MN1001MI3M1260H mismatches: 1 - insertions: 1 - deletions: 0
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      0E0
    • BLAST Score
      3,772 bits
    • Similarity
      99.9%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      CP000946
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H1204MN840MI3M1260H mismatches: 1 - insertions: 1 - deletions: 0
  • Cloning vector pKaKa2

    Cloning vector pKaKa2

    • Public DB hit
      GI:309274431
      GU074525
    • Hit length
      18,909 bp
    • E Value
      0E0
    • BLAST Score
      3,760.9 bits
    • Similarity
      99.95%
    • Coverage
      60.87%
    • Alignment (schematic)

      SEQ ID NO 4
      60.87% cov
      GU074525
      10.79% cov
    • Alignment Length
      2,040 bp
    • CIGAR string
      42H2036MI3M1269H mismatches: 0 - insertions: 1 - deletions: 0
  • Site-specific excision vector pCRE5

    Site-specific excision vector pCRE5

    • Public DB hit
      GI:158343385
      EU215440
    • Hit length
      6,844 bp
    • E Value
      0E0
    • BLAST Score
      3,760.9 bits
    • Similarity
      100%
    • Coverage
      60.78%
    • Alignment (schematic)

      SEQ ID NO 4
      60.78% cov
      EU215440
      29.75% cov
    • Alignment Length
      2,036 bp
    • CIGAR string
      42H2036M1272H mismatches: 0 - insertions: 0 - deletions: 0
  • Site-specific excision vector pCRE3

    Site-specific excision vector pCRE3

    • Public DB hit
      GI:158343379
      EU215439
    • Hit length
      6,424 bp
    • E Value
      0E0
    • BLAST Score
      3,760.9 bits
    • Similarity
      100%
    • Coverage
      60.78%
    • Alignment (schematic)

      SEQ ID NO 4
      60.78% cov
      EU215439
      31.69% cov
    • Alignment Length
      2,036 bp
    • CIGAR string
      42H2036M1272H mismatches: 0 - insertions: 0 - deletions: 0
  • Site-specific excision vector pFLPe4

    Site-specific excision vector pFLPe4

    • Public DB hit
      GI:158343373
      EU215438
    • Hit length
      7,072 bp
    • E Value
      0E0
    • BLAST Score
      3,760.9 bits
    • Similarity
      99.95%
    • Coverage
      60.87%
    • Alignment (schematic)

      SEQ ID NO 4
      60.87% cov
      EU215438
      28.85% cov
    • Alignment Length
      2,040 bp
    • CIGAR string
      42H2036MI3M1269H mismatches: 0 - insertions: 1 - deletions: 0
  • Site-specific excision vector pFLPe2

    Site-specific excision vector pFLPe2

    • Public DB hit
      GI:158343367
      EU215437
    • Hit length
      6,611 bp
    • E Value
      0E0
    • BLAST Score
      3,760.9 bits
    • Similarity
      99.95%
    • Coverage
      60.87%
    • Alignment (schematic)

      SEQ ID NO 4
      60.87% cov
      EU215437
      30.86% cov
    • Alignment Length
      2,040 bp
    • CIGAR string
      42H2036MI3M1269H mismatches: 0 - insertions: 1 - deletions: 0
  • Plasposon pSCrhaBout

    Plasposon pSCrhaBout

    • Public DB hit
      GI:84689052
      DQ317695
    • Hit length
      6,568 bp
    • E Value
      0E0
    • BLAST Score
      3,760.9 bits
    • Similarity
      99.8%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      DQ317695
      31.18% cov
    • Alignment Length
      2,048 bp
    • CIGAR string
      42H592MN721MN89MN360MN282M1260H mismatches: 4 - insertions: 0 - deletions: 0
  • Plasposon pSCrhaBoutgfp

    Plasposon pSCrhaBoutgfp

    • Public DB hit
      GI:84689048
      DQ317694
    • Hit length
      7,285 bp
    • E Value
      0E0
    • BLAST Score
      3,760.9 bits
    • Similarity
      99.8%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      DQ317694
      28.11% cov
    • Alignment Length
      2,048 bp
    • CIGAR string
      42H592MN721MN89MN360MN282M1260H mismatches: 4 - insertions: 0 - deletions: 0
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218359353
      CU928160
    • Hit length
      4,700,560 bp
    • E Value
      0E0
    • BLAST Score
      3,727.7 bits
    • Similarity
      99.51%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      CU928160
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H488MN37MN407MN14MN883MN37MN31MN16MN60MN63MI3M1260H mismatches: 9 - insertions: 1 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      0E0
    • BLAST Score
      3,722.1 bits
    • Similarity
      99.46%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      CP002516
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H395MN92MN37MN407MN14MN610MN126MN225M2N77MN52MI3M1260H mismatches: 10 - insertions: 1 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      0E0
    • BLAST Score
      3,722.1 bits
    • Similarity
      99.46%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      CP002185
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H395MN92MN37MN407MN14MN610MN126MN225M2N77MN52MI3M1260H mismatches: 10 - insertions: 1 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      0E0
    • BLAST Score
      3,722.1 bits
    • Similarity
      99.46%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      CU928145
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H488MN37MN407MN14MN828MN54MN37MN31MN16MN60MN63MI3M1260H mismatches: 10 - insertions: 1 - deletions: 0
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      0E0
    • BLAST Score
      3,711 bits
    • Similarity
      99.37%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      CP001383
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H171MN316MN37MN16MN26MN77MN32MN20MN50MN288MN23MN655MN322MI3M1260H mismatches: 12 - insertions: 1 - deletions: 0
  • Shigella flexneri 2a str. 301

    Shigella flexneri 2a str. 301

    • Public DB hit
      GI:24080789
      AE005674
    • Hit length
      4,607,203 bp
    • E Value
      0E0
    • BLAST Score
      3,711 bits
    • Similarity
      99.37%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      AE005674
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H171MN316MN37MN16MN26MN77MN32MN20MN50MN288MN23MN655MN322MI3M1260H mismatches: 12 - insertions: 1 - deletions: 0
  • Shigella flexneri 2a str. 2457T

    Shigella flexneri 2a str. 2457T

    • Public DB hit
      GI:30043918
      AE014073
    • Hit length
      4,599,354 bp
    • E Value
      0E0
    • BLAST Score
      3,711 bits
    • Similarity
      99.37%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 4
      61.13% cov
      AE014073
      0.04% cov
    • Alignment Length
      2,049 bp
    • CIGAR string
      42H171MN316MN37MN16MN26MN77MN32MN20MN50MN288MN23MN655MN322MI3M1260H mismatches: 12 - insertions: 1 - deletions: 0
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
2,280
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
4,728
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
1,440
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Plastid transformation vector pCLT516

    Plastid transformation vector pCLT516

    • Public DB hit
      GI:116561326
      DQ882177
    • Hit length
      6,116 bp
    • E Value
      0E0
    • BLAST Score
      2,479.3 bits
    • Similarity
      100%
    • Coverage
      93.19%
    • Alignment (schematic)

      SEQ ID NO 7
      93.19% cov
      DQ882177
      21.94% cov
    • Alignment Length
      1,342 bp
    • CIGAR string
      58H1342M40H mismatches: 0 - insertions: 0 - deletions: 0
  • Plastid transformation vector pCLT515

    Plastid transformation vector pCLT515

    • Public DB hit
      GI:116561295
      DQ882176
    • Hit length
      6,056 bp
    • E Value
      0E0
    • BLAST Score
      2,479.3 bits
    • Similarity
      100%
    • Coverage
      93.19%
    • Alignment (schematic)

      SEQ ID NO 7
      93.19% cov
      DQ882176
      22.16% cov
    • Alignment Length
      1,342 bp
    • CIGAR string
      58H1342M40H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      93.12%
    • Alignment (schematic)

      SEQ ID NO 7
      93.12% cov
      AP012030
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      58H1341M41H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      93.12%
    • Alignment (schematic)

      SEQ ID NO 7
      93.12% cov
      CP001396
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      58H1341M41H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      93.12%
    • Alignment (schematic)

      SEQ ID NO 7
      93.12% cov
      CP000948
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      58H1341M41H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      93.12%
    • Alignment (schematic)

      SEQ ID NO 7
      93.12% cov
      AP009048
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      58H1341M41H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
      1 of 2 hits reported for Escherichia coli str. K-12 substr. MG1655.
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      93.12%
    • Alignment (schematic)

      SEQ ID NO 7
      93.12% cov
      U00096
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      58H1341M41H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:147230
      M29664
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      1,870 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      93.12%
    • Alignment (schematic)

      SEQ ID NO 7
      93.12% cov
      M29664
      71.71% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      58H1341M41H mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:938042
      Z50121
      1 of 5 hits reported for synthetic construct.
    • Hit length
      2,885 bp
    • E Value
      0E0
    • BLAST Score
      2,473.8 bits
    • Similarity
      100%
    • Coverage
      92.99%
    • Alignment (schematic)

      SEQ ID NO 7
      92.99% cov
      Z50121
      46.41% cov
    • Alignment Length
      1,339 bp
    • CIGAR string
      60H1339M41H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli K-12

    Escherichia coli K-12

    • Public DB hit
      GI:220681450
      FJ546461
    • Hit length
      1,350 bp
    • E Value
      0E0
    • BLAST Score
      2,466.4 bits
    • Similarity
      99.93%
    • Coverage
      92.92%
    • Alignment (schematic)

      SEQ ID NO 7
      92.92% cov
      FJ546461
      99.11% cov
    • Alignment Length
      1,338 bp
    • CIGAR string
      58H469MN868M44H mismatches: 1 - insertions: 0 - deletions: 0
  • Cloning vector pSB3616

    Cloning vector pSB3616

    • Public DB hit
      GI:15004259
      AY042185
    • Hit length
      7,151 bp
    • E Value
      0E0
    • BLAST Score
      2,466.4 bits
    • Similarity
      100%
    • Coverage
      92.71%
    • Alignment (schematic)

      SEQ ID NO 7
      92.71% cov
      AY042185
      18.67% cov
    • Alignment Length
      1,335 bp
    • CIGAR string
      64H1335M41H mismatches: 0 - insertions: 0 - deletions: 0
  • Expression vector pSB2991

    Expression vector pSB2991

    • Public DB hit
      GI:8843951
      AF247169
    • Hit length
      7,233 bp
    • E Value
      0E0
    • BLAST Score
      2,466.4 bits
    • Similarity
      100%
    • Coverage
      92.71%
    • Alignment (schematic)

      SEQ ID NO 7
      92.71% cov
      AF247169
      18.46% cov
    • Alignment Length
      1,335 bp
    • CIGAR string
      64H1335M41H mismatches: 0 - insertions: 0 - deletions: 0
  • Dual pho-lac fusion vector pMA632

    Dual pho-lac fusion vector pMA632

    • Public DB hit
      GI:3834580
      AF087958
    • Hit length
      4,075 bp
    • E Value
      0E0
    • BLAST Score
      2,466.4 bits
    • Similarity
      100%
    • Coverage
      92.71%
    • Alignment (schematic)

      SEQ ID NO 7
      92.71% cov
      AF087958
      32.76% cov
    • Alignment Length
      1,335 bp
    • CIGAR string
      61H1335M44H mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pDAP2

    Cloning vector pDAP2

    • Public DB hit
      GI:1016008
      U35316
    • Hit length
      4,630 bp
    • E Value
      0E0
    • BLAST Score
      2,460.9 bits
    • Similarity
      100%
    • Coverage
      92.5%
    • Alignment (schematic)

      SEQ ID NO 7
      92.5% cov
      U35316
      28.77% cov
    • Alignment Length
      1,332 bp
    • CIGAR string
      58H1332M50H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      0E0
    • BLAST Score
      2,388.8 bits
    • Similarity
      98.81%
    • Coverage
      93.12%
    • Alignment (schematic)

      SEQ ID NO 7
      93.12% cov
      CP001846
      0.02% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      58H62MN7MN9MN74MN59MN56MN188MN11MN344MN2MN32MN26MN8MN167MN8MN209MN63M41H mismatches: 16 - insertions: 0 - deletions: 0
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
1,560
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      0E0
    • BLAST Score
      2,741.5 bits
    • Similarity
      100%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      AP012030
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H1484M17H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      2,741.5 bits
    • Similarity
      100%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      CP001396
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H1484M17H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      2,741.5 bits
    • Similarity
      100%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      CP000948
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H1484M17H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      2,741.5 bits
    • Similarity
      100%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      AP009048
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H1484M17H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
      1 of 2 hits reported for Escherichia coli str. K-12 substr. MG1655.
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      2,741.5 bits
    • Similarity
      100%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      U00096
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H1484M17H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:147230
      M29664
      1 of 9 hits reported for Escherichia coli.
    • Hit length
      1,870 bp
    • E Value
      0E0
    • BLAST Score
      2,741.5 bits
    • Similarity
      100%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      M29664
      79.36% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H1484M17H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      0E0
    • BLAST Score
      2,652.9 bits
    • Similarity
      98.92%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      CP001846
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H205MN7MN9MN74MN59MN56MN188MN11MN344MN2MN32MN26MN8MN167MN8MN209MN63M17H mismatches: 16 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      0E0
    • BLAST Score
      2,647.4 bits
    • Similarity
      98.85%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      CP001368
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H205MN7MN9MN74MN59MN56MN188MN11MN344MN2MN32MN26MN8MN167MN8MN83MN125MN63M17H mismatches: 17 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EC4115

    Escherichia coli O157:H7 str. EC4115

    • Public DB hit
      GI:209157093
      CP001164
    • Hit length
      5,572,075 bp
    • E Value
      0E0
    • BLAST Score
      2,647.4 bits
    • Similarity
      98.85%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      CP001164
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H205MN7MN9MN74MN59MN56MN188MN11MN344MN2MN32MN26MN8MN167MN8MN83MN125MN63M17H mismatches: 17 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. Sakai

    Escherichia coli O157:H7 str. Sakai

    • Public DB hit
      GI:47118301
      BA000007
    • Hit length
      5,498,450 bp
    • E Value
      0E0
    • BLAST Score
      2,647.4 bits
    • Similarity
      98.85%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      BA000007
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H205MN7MN9MN74MN59MN56MN188MN11MN344MN2MN32MN26MN8MN167MN8MN83MN125MN63M17H mismatches: 17 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:56384585
      AE005174
    • Hit length
      5,528,445 bp
    • E Value
      0E0
    • BLAST Score
      2,647.4 bits
    • Similarity
      98.85%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      AE005174
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H205MN7MN9MN74MN59MN56MN188MN11MN344MN2MN32MN26MN8MN167MN8MN83MN125MN63M17H mismatches: 17 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      0E0
    • BLAST Score
      2,641.8 bits
    • Similarity
      98.79%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      CP002516
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H205MN17MN74MN59MN53MN212MN220MN96MN17MN35MN35MN47MN44MN132MN22MN11MN14MN38MN135M17H mismatches: 18 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      0E0
    • BLAST Score
      2,641.8 bits
    • Similarity
      98.79%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      CP002185
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H205MN17MN74MN59MN53MN212MN220MN96MN17MN35MN35MN47MN44MN132MN22MN11MN14MN38MN135M17H mismatches: 18 - insertions: 0 - deletions: 0
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218359353
      CU928160
    • Hit length
      4,700,560 bp
    • E Value
      0E0
    • BLAST Score
      2,641.8 bits
    • Similarity
      98.79%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      CU928160
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H205MN17MN74MN59MN257MN134MN32MN59MN50MN8MN56MN35MN83MN44MN83MN2MN50MN71MN147M17H mismatches: 18 - insertions: 0 - deletions: 0
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      0E0
    • BLAST Score
      2,636.3 bits
    • Similarity
      98.72%
    • Coverage
      95.13%
    • Alignment (schematic)

      SEQ ID NO 8
      95.13% cov
      CP000946
      0.03% cov
    • Alignment Length
      1,484 bp
    • CIGAR string
      59H205MN17MN74MN59MN12MN176MN67MN134MN32MN61MN6MN5MN2MN3MN12MN117MN350MN23MN95MN15M17H mismatches: 19 - insertions: 0 - deletions: 0
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
1,500
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Plastid transformation vector pCLT516

    Plastid transformation vector pCLT516

    • Public DB hit
      GI:116561326
      DQ882177
    • Hit length
      6,116 bp
    • E Value
      0E0
    • BLAST Score
      2,479.3 bits
    • Similarity
      100%
    • Coverage
      89.47%
    • Alignment (schematic)

      SEQ ID NO 9
      89.47% cov
      DQ882177
      21.94% cov
    • Alignment Length
      1,342 bp
    • CIGAR string
      124H1342M34H mismatches: 0 - insertions: 0 - deletions: 0
  • Plastid transformation vector pCLT515

    Plastid transformation vector pCLT515

    • Public DB hit
      GI:116561295
      DQ882176
    • Hit length
      6,056 bp
    • E Value
      0E0
    • BLAST Score
      2,479.3 bits
    • Similarity
      100%
    • Coverage
      89.47%
    • Alignment (schematic)

      SEQ ID NO 9
      89.47% cov
      DQ882176
      22.16% cov
    • Alignment Length
      1,342 bp
    • CIGAR string
      124H1342M34H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      89.4%
    • Alignment (schematic)

      SEQ ID NO 9
      89.4% cov
      AP012030
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      124H1341M35H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      89.4%
    • Alignment (schematic)

      SEQ ID NO 9
      89.4% cov
      CP001396
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      124H1341M35H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      89.4%
    • Alignment (schematic)

      SEQ ID NO 9
      89.4% cov
      CP000948
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      124H1341M35H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      89.4%
    • Alignment (schematic)

      SEQ ID NO 9
      89.4% cov
      AP009048
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      124H1341M35H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
      1 of 2 hits reported for Escherichia coli str. K-12 substr. MG1655.
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      89.4%
    • Alignment (schematic)

      SEQ ID NO 9
      89.4% cov
      U00096
      0.03% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      124H1341M35H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:147230
      M29664
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      1,870 bp
    • E Value
      0E0
    • BLAST Score
      2,477.5 bits
    • Similarity
      100%
    • Coverage
      89.4%
    • Alignment (schematic)

      SEQ ID NO 9
      89.4% cov
      M29664
      71.71% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      124H1341M35H mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:938042
      Z50121
      1 of 5 hits reported for synthetic construct.
    • Hit length
      2,885 bp
    • E Value
      0E0
    • BLAST Score
      2,473.8 bits
    • Similarity
      100%
    • Coverage
      89.27%
    • Alignment (schematic)

      SEQ ID NO 9
      89.27% cov
      Z50121
      46.41% cov
    • Alignment Length
      1,339 bp
    • CIGAR string
      126H1339M35H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli K-12

    Escherichia coli K-12

    • Public DB hit
      GI:220681450
      FJ546461
    • Hit length
      1,350 bp
    • E Value
      0E0
    • BLAST Score
      2,466.4 bits
    • Similarity
      99.93%
    • Coverage
      89.2%
    • Alignment (schematic)

      SEQ ID NO 9
      89.2% cov
      FJ546461
      99.11% cov
    • Alignment Length
      1,338 bp
    • CIGAR string
      124H469MN868M38H mismatches: 1 - insertions: 0 - deletions: 0
  • Cloning vector pSB3616

    Cloning vector pSB3616

    • Public DB hit
      GI:15004259
      AY042185
    • Hit length
      7,151 bp
    • E Value
      0E0
    • BLAST Score
      2,466.4 bits
    • Similarity
      100%
    • Coverage
      89%
    • Alignment (schematic)

      SEQ ID NO 9
      89% cov
      AY042185
      18.67% cov
    • Alignment Length
      1,335 bp
    • CIGAR string
      130H1335M35H mismatches: 0 - insertions: 0 - deletions: 0
  • Expression vector pSB2991

    Expression vector pSB2991

    • Public DB hit
      GI:8843951
      AF247169
    • Hit length
      7,233 bp
    • E Value
      0E0
    • BLAST Score
      2,466.4 bits
    • Similarity
      100%
    • Coverage
      89%
    • Alignment (schematic)

      SEQ ID NO 9
      89% cov
      AF247169
      18.46% cov
    • Alignment Length
      1,335 bp
    • CIGAR string
      130H1335M35H mismatches: 0 - insertions: 0 - deletions: 0
  • Dual pho-lac fusion vector pMA632

    Dual pho-lac fusion vector pMA632

    • Public DB hit
      GI:3834580
      AF087958
    • Hit length
      4,075 bp
    • E Value
      0E0
    • BLAST Score
      2,466.4 bits
    • Similarity
      100%
    • Coverage
      89%
    • Alignment (schematic)

      SEQ ID NO 9
      89% cov
      AF087958
      32.76% cov
    • Alignment Length
      1,335 bp
    • CIGAR string
      127H1335M38H mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pDAP2

    Cloning vector pDAP2

    • Public DB hit
      GI:1016008
      U35316
    • Hit length
      4,630 bp
    • E Value
      0E0
    • BLAST Score
      2,460.9 bits
    • Similarity
      100%
    • Coverage
      88.8%
    • Alignment (schematic)

      SEQ ID NO 9
      88.8% cov
      U35316
      28.77% cov
    • Alignment Length
      1,332 bp
    • CIGAR string
      124H1332M44H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      0E0
    • BLAST Score
      2,388.8 bits
    • Similarity
      98.81%
    • Coverage
      89.4%
    • Alignment (schematic)

      SEQ ID NO 9
      89.4% cov
      CP001846
      0.02% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      124H62MN7MN9MN74MN59MN56MN188MN11MN344MN2MN32MN26MN8MN167MN8MN209MN63M35H mismatches: 16 - insertions: 0 - deletions: 0
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
3,968
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
Occurrence
15 times in PatSeqDB
Tools
PatSeq Finder

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