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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings
87 sequences found in this patent (in total)

Displaying 1 - 10 of 87 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
2,770
Type
DNA
Locations
Undetermined

Declared organism:
Homo sapiens

Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
251
Type
peptide
Locations
Undetermined

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:10190674
      NP_065689
    • Hit length
      251 aa
    • E Value
      2.37E-146
    • BLAST Score
      522.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_065689
      100% cov
    • Alignment Length
      251 aa
    • CIGAR string
      251M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114642911
      XP_001157070
    • Hit length
      251 aa
    • E Value
      1.84E-143
    • BLAST Score
      513.1 bits
    • Similarity
      99.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001157070
      100% cov
    • Alignment Length
      251 aa
    • CIGAR string
      18MN89MN18MN19MN99MN3M mismatches: 5 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332249197
      XP_003273749
    • Hit length
      251 aa
    • E Value
      2.51E-142
    • BLAST Score
      509.6 bits
    • Similarity
      98.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003273749
      100% cov
    • Alignment Length
      251 aa
    • CIGAR string
      108MN22MN34MN5MN37MNMN34MN3M mismatches: 7 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:302564626
      NP_001181066
    • Hit length
      251 aa
    • E Value
      8.35E-141
    • BLAST Score
      504.2 bits
    • Similarity
      98.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001181066
      100% cov
    • Alignment Length
      251 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296211132
      XP_002752281
    • Hit length
      251 aa
    • E Value
      3.85E-132
    • BLAST Score
      475.7 bits
    • Similarity
      94.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002752281
      100% cov
    • Alignment Length
      251 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291392687
      XP_002712872
    • Hit length
      252 aa
    • E Value
      6.17E-118
    • BLAST Score
      428.3 bits
    • Similarity
      88.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002712872
      100% cov
    • Alignment Length
      252 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149712613
      XP_001491469
    • Hit length
      246 aa
    • E Value
      9.61E-117
    • BLAST Score
      424.5 bits
    • Similarity
      87.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001491469
      100% cov
    • Alignment Length
      251 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301770151
      XP_002920496
    • Hit length
      245 aa
    • E Value
      8.92E-115
    • BLAST Score
      417.9 bits
    • Similarity
      86.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002920496
      100% cov
    • Alignment Length
      251 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73997774
      XP_854580
    • Hit length
      312 aa
    • E Value
      3.18E-106
    • BLAST Score
      389.4 bits
    • Similarity
      83.4%
    • Coverage
      98.41%
    • Alignment (schematic)

      SEQ ID NO 2
      98.41% cov
      XP_854580
      77.24% cov
    • Alignment Length
      247 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:194037894
      XP_001926560
    • Hit length
      244 aa
    • E Value
      5.51E-106
    • BLAST Score
      388.7 bits
    • Similarity
      82.4%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 2
      99.6% cov
      XP_001926560
      99.59% cov
    • Alignment Length
      250 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297475332
      XP_002687926
    • Hit length
      245 aa
    • E Value
      8.23E-106
    • BLAST Score
      388.3 bits
    • Similarity
      84.06%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 2
      99.6% cov
      XP_002687926
      99.59% cov
    • Alignment Length
      251 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:18543369
      NP_570110
    • Hit length
      251 aa
    • E Value
      1.18E-98
    • BLAST Score
      364.4 bits
    • Similarity
      82.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_570110
      100% cov
    • Alignment Length
      251 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:111308236
      AAI20606
    • Hit length
      251 aa
    • E Value
      6.53E-97
    • BLAST Score
      358.6 bits
    • Similarity
      80.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAI20606
      100% cov
    • Alignment Length
      251 aa
Occurrence
1241 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
684
Type
DNA
Locations
Undetermined

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:15055547
      NM_020638
      1 of 13 hits reported for Homo sapiens.
    • Hit length
      3,018 bp
    • E Value
      0E0
    • BLAST Score
      1,264.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_020638
      22.66% cov
    • Alignment Length
      684 bp
    • CIGAR string
      684M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332838326
      XM_001157070
    • Hit length
      1,598 bp
    • E Value
      0E0
    • BLAST Score
      1,236.5 bits
    • Similarity
      99.41%
    • Coverage
      99.56%
    • Alignment (schematic)

      SEQ ID NO 3
      99.56% cov
      XM_001157070
      42.62% cov
    • Alignment Length
      681 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332249196
      XM_003273701
    • Hit length
      1,610 bp
    • E Value
      0E0
    • BLAST Score
      1,197.7 bits
    • Similarity
      98.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_003273701
      42.48% cov
    • Alignment Length
      684 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:302564625
      NM_001194137
    • Hit length
      924 bp
    • E Value
      0E0
    • BLAST Score
      1,142.3 bits
    • Similarity
      96.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_001194137
      74.03% cov
    • Alignment Length
      684 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296211131
      XM_002752235
    • Hit length
      756 bp
    • E Value
      0E0
    • BLAST Score
      1,053.7 bits
    • Similarity
      94.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002752235
      90.48% cov
    • Alignment Length
      685 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297714651
      XR_096556
    • Hit length
      1,249 bp
    • E Value
      0E0
    • BLAST Score
      937.4 bits
    • Similarity
      97.61%
    • Coverage
      79.68%
    • Alignment (schematic)

      SEQ ID NO 3
      79.68% cov
      XR_096556
      43.63% cov
    • Alignment Length
      545 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
227
Type
peptide
Locations
Undetermined

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:10190674
      NP_065689
    • Hit length
      251 aa
    • E Value
      9.57E-132
    • BLAST Score
      473.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_065689
      90.44% cov
    • Alignment Length
      227 aa
    • CIGAR string
      227M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114642911
      XP_001157070
    • Hit length
      251 aa
    • E Value
      3.18E-129
    • BLAST Score
      465.7 bits
    • Similarity
      99.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001157070
      90.44% cov
    • Alignment Length
      227 aa
    • CIGAR string
      84MN18MN19MN99MN3M mismatches: 4 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332249197
      XP_003273749
    • Hit length
      251 aa
    • E Value
      1.22E-127
    • BLAST Score
      460.3 bits
    • Similarity
      98.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003273749
      90.44% cov
    • Alignment Length
      227 aa
    • CIGAR string
      84MN22MN34MN5MN37MNMN34MN3M mismatches: 7 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:302564626
      NP_001181066
    • Hit length
      251 aa
    • E Value
      2.03E-126
    • BLAST Score
      456.4 bits
    • Similarity
      98.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001181066
      90.44% cov
    • Alignment Length
      227 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296211132
      XP_002752281
    • Hit length
      251 aa
    • E Value
      2.35E-117
    • BLAST Score
      426 bits
    • Similarity
      93.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002752281
      90.44% cov
    • Alignment Length
      227 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149712613
      XP_001491469
    • Hit length
      246 aa
    • E Value
      1.83E-114
    • BLAST Score
      416.4 bits
    • Similarity
      92.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001491469
      92.28% cov
    • Alignment Length
      227 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301770151
      XP_002920496
    • Hit length
      245 aa
    • E Value
      2.64E-111
    • BLAST Score
      406 bits
    • Similarity
      91.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002920496
      92.24% cov
    • Alignment Length
      227 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291392687
      XP_002712872
    • Hit length
      252 aa
    • E Value
      6.67E-109
    • BLAST Score
      397.9 bits
    • Similarity
      88.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002712872
      90.08% cov
    • Alignment Length
      227 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73997774
      XP_854580
    • Hit length
      312 aa
    • E Value
      5.61E-103
    • BLAST Score
      378.3 bits
    • Similarity
      87.44%
    • Coverage
      98.24%
    • Alignment (schematic)

      SEQ ID NO 4
      98.24% cov
      XP_854580
      71.15% cov
    • Alignment Length
      223 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297475332
      XP_002687926
    • Hit length
      245 aa
    • E Value
      7.65E-100
    • BLAST Score
      367.9 bits
    • Similarity
      86.34%
    • Coverage
      99.56%
    • Alignment (schematic)

      SEQ ID NO 4
      99.56% cov
      XP_002687926
      91.84% cov
    • Alignment Length
      227 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:194037894
      XP_001926560
    • Hit length
      244 aa
    • E Value
      3.7E-99
    • BLAST Score
      365.5 bits
    • Similarity
      84.96%
    • Coverage
      99.56%
    • Alignment (schematic)

      SEQ ID NO 4
      99.56% cov
      XP_001926560
      91.8% cov
    • Alignment Length
      226 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:18543369
      NP_570110
    • Hit length
      251 aa
    • E Value
      5.97E-90
    • BLAST Score
      335.1 bits
    • Similarity
      82.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_570110
      90.44% cov
    • Alignment Length
      227 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:111308236
      AAI20606
    • Hit length
      251 aa
    • E Value
      1.08E-88
    • BLAST Score
      330.9 bits
    • Similarity
      81.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAI20606
      90.44% cov
    • Alignment Length
      227 aa
Occurrence
88 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
465
Type
DNA
Locations
Undetermined

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:15055547
      NM_020638
      1 of 9 hits reported for Homo sapiens.
    • Hit length
      3,018 bp
    • E Value
      0E0
    • BLAST Score
      859.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_020638
      15.41% cov
    • Alignment Length
      465 bp
    • CIGAR string
      465M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332838326
      XM_001157070
    • Hit length
      1,598 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.35%
    • Coverage
      99.35%
    • Alignment (schematic)

      SEQ ID NO 5
      99.35% cov
      XM_001157070
      28.91% cov
    • Alignment Length
      462 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332249196
      XM_003273701
    • Hit length
      1,610 bp
    • E Value
      0E0
    • BLAST Score
      826.6 bits
    • Similarity
      98.71%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_003273701
      28.88% cov
    • Alignment Length
      465 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296211131
      XM_002752235
    • Hit length
      756 bp
    • E Value
      0E0
    • BLAST Score
      782.3 bits
    • Similarity
      96.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_002752235
      61.51% cov
    • Alignment Length
      465 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:302564625
      NM_001194137
    • Hit length
      924 bp
    • E Value
      0E0
    • BLAST Score
      776.7 bits
    • Similarity
      96.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_001194137
      50.32% cov
    • Alignment Length
      465 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291392686
      XM_002712826
    • Hit length
      759 bp
    • E Value
      1.05E-160
    • BLAST Score
      575.4 bits
    • Similarity
      89.54%
    • Coverage
      97.85%
    • Alignment (schematic)

      SEQ ID NO 5
      97.85% cov
      XM_002712826
      59.95% cov
    • Alignment Length
      459 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297714651
      XR_096556
    • Hit length
      1,249 bp
    • E Value
      1.36E-159
    • BLAST Score
      571.7 bits
    • Similarity
      98.16%
    • Coverage
      70.11%
    • Alignment (schematic)

      SEQ ID NO 5
      70.11% cov
      XR_096556
      26.1% cov
    • Alignment Length
      326 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149712612
      XM_001491419
    • Hit length
      741 bp
    • E Value
      2.28E-157
    • BLAST Score
      564.3 bits
    • Similarity
      88.82%
    • Coverage
      99.14%
    • Alignment (schematic)

      SEQ ID NO 5
      99.14% cov
      XM_001491419
      62.21% cov
    • Alignment Length
      465 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301770150
      XM_002920450
    • Hit length
      738 bp
    • E Value
      1.06E-155
    • BLAST Score
      558.8 bits
    • Similarity
      88.63%
    • Coverage
      99.14%
    • Alignment (schematic)

      SEQ ID NO 5
      99.14% cov
      XM_002920450
      62.47% cov
    • Alignment Length
      466 bp
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
155
Type
peptide
Locations
Undetermined

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:10190674
      NP_065689
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      251 aa
    • E Value
      8.81E-88
    • BLAST Score
      327 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_065689
      61.75% cov
    • Alignment Length
      155 aa
    • CIGAR string
      155M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114642911
      XP_001157070
    • Hit length
      251 aa
    • E Value
      7.98E-86
    • BLAST Score
      320.5 bits
    • Similarity
      99.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001157070
      61.75% cov
    • Alignment Length
      155 aa
    • CIGAR string
      84MN18MN19MN31M mismatches: 3 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332249197
      XP_003273749
    • Hit length
      251 aa
    • E Value
      1.06E-85
    • BLAST Score
      320.1 bits
    • Similarity
      99.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_003273749
      61.75% cov
    • Alignment Length
      155 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:302564626
      NP_001181066
    • Hit length
      251 aa
    • E Value
      3.38E-84
    • BLAST Score
      315.1 bits
    • Similarity
      98.71%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_001181066
      61.75% cov
    • Alignment Length
      155 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296211132
      XP_002752281
    • Hit length
      251 aa
    • E Value
      4.88E-82
    • BLAST Score
      307.8 bits
    • Similarity
      96.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002752281
      61.75% cov
    • Alignment Length
      155 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291392687
      XP_002712872
    • Hit length
      252 aa
    • E Value
      4E-79
    • BLAST Score
      298.1 bits
    • Similarity
      94.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002712872
      61.51% cov
    • Alignment Length
      155 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149712613
      XP_001491469
    • Hit length
      246 aa
    • E Value
      1.37E-77
    • BLAST Score
      293.1 bits
    • Similarity
      93.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001491469
      63.01% cov
    • Alignment Length
      155 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301770151
      XP_002920496
    • Hit length
      245 aa
    • E Value
      3.25E-77
    • BLAST Score
      291.6 bits
    • Similarity
      92.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002920496
      63.27% cov
    • Alignment Length
      155 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73997774
      XP_854580
    • Hit length
      312 aa
    • E Value
      8.41E-77
    • BLAST Score
      290.4 bits
    • Similarity
      92.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_854580
      49.68% cov
    • Alignment Length
      155 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:194037894
      XP_001926560
    • Hit length
      244 aa
    • E Value
      2.49E-73
    • BLAST Score
      278.9 bits
    • Similarity
      90.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001926560
      63.52% cov
    • Alignment Length
      155 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297475332
      XP_002687926
    • Hit length
      245 aa
    • E Value
      2.94E-73
    • BLAST Score
      278.5 bits
    • Similarity
      91.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002687926
      63.67% cov
    • Alignment Length
      156 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:18543369
      NP_570110
    • Hit length
      251 aa
    • E Value
      3.34E-66
    • BLAST Score
      255 bits
    • Similarity
      87.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_570110
      61.75% cov
    • Alignment Length
      155 aa
Occurrence
19 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
219
Type
DNA
Locations
Undetermined

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:160358364
      NG_007087
      1 of 15 hits reported for Homo sapiens.
    • Hit length
      18,502 bp
    • E Value
      6.34E-110
    • BLAST Score
      405.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NG_007087
      1.18% cov
    • Alignment Length
      219 bp
    • CIGAR string
      219M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332838326
      XM_001157070
    • Hit length
      1,598 bp
    • E Value
      2.95E-108
    • BLAST Score
      400 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_001157070
      13.7% cov
    • Alignment Length
      219 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332249196
      XM_003273701
    • Hit length
      1,610 bp
    • E Value
      6.43E-100
    • BLAST Score
      372.3 bits
    • Similarity
      97.26%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003273701
      13.6% cov
    • Alignment Length
      219 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:302564625
      NM_001194137
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      924 bp
    • E Value
      2.99E-98
    • BLAST Score
      366.8 bits
    • Similarity
      96.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_001194137
      23.7% cov
    • Alignment Length
      219 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297714651
      XR_096556
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      1,249 bp
    • E Value
      2.99E-98
    • BLAST Score
      366.8 bits
    • Similarity
      96.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XR_096556
      17.53% cov
    • Alignment Length
      219 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149712612
      XM_001491419
    • Hit length
      741 bp
    • E Value
      6.81E-60
    • BLAST Score
      239.3 bits
    • Similarity
      86.43%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_001491419
      29.55% cov
    • Alignment Length
      221 bp
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
72
Type
peptide
Locations
Undetermined

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:10190674
      NP_065689
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      251 aa
    • E Value
      1.86E-34
    • BLAST Score
      149.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_065689
      28.69% cov
    • Alignment Length
      72 aa
    • CIGAR string
      72M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114642911
      XP_001157070
    • Hit length
      251 aa
    • E Value
      8.56E-34
    • BLAST Score
      147.5 bits
    • Similarity
      98.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_001157070
      28.69% cov
    • Alignment Length
      72 aa
    • CIGAR string
      68MN3M mismatches: 1 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:302564626
      NP_001181066
    • Hit length
      251 aa
    • E Value
      1.74E-32
    • BLAST Score
      143.3 bits
    • Similarity
      97.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001181066
      28.69% cov
    • Alignment Length
      72 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332249197
      XP_003273749
    • Hit length
      251 aa
    • E Value
      1.91E-32
    • BLAST Score
      142.9 bits
    • Similarity
      97.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_003273749
      28.69% cov
    • Alignment Length
      72 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149712613
      XP_001491469
    • Hit length
      246 aa
    • E Value
      1.33E-27
    • BLAST Score
      126.7 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_001491469
      29.27% cov
    • Alignment Length
      72 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296211132
      XP_002752281
    • Hit length
      251 aa
    • E Value
      1.03E-25
    • BLAST Score
      120.6 bits
    • Similarity
      86.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002752281
      28.69% cov
    • Alignment Length
      72 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301770151
      XP_002920496
    • Hit length
      245 aa
    • E Value
      8.3E-25
    • BLAST Score
      117.5 bits
    • Similarity
      87.32%
    • Coverage
      98.61%
    • Alignment (schematic)

      SEQ ID NO 8
      98.61% cov
      XP_002920496
      28.98% cov
    • Alignment Length
      71 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291392687
      XP_002712872
    • Hit length
      252 aa
    • E Value
      7.15E-21
    • BLAST Score
      104.4 bits
    • Similarity
      76.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002712872
      28.57% cov
    • Alignment Length
      72 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73997774
      XP_854580
    • Hit length
      312 aa
    • E Value
      1.88E-16
    • BLAST Score
      89.7 bits
    • Similarity
      77.42%
    • Coverage
      86.11%
    • Alignment (schematic)

      SEQ ID NO 8
      86.11% cov
      XP_854580
      19.87% cov
    • Alignment Length
      62 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:194037894
      XP_001926560
    • Hit length
      244 aa
    • E Value
      4.06E-16
    • BLAST Score
      88.6 bits
    • Similarity
      77.78%
    • Coverage
      87.5%
    • Alignment (schematic)

      SEQ ID NO 8
      87.5% cov
      XP_001926560
      25.82% cov
    • Alignment Length
      63 aa
Occurrence
43 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
543
Type
DNA
Locations
Undetermined

Declared organism:
Mus sp.

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:110625790
      NM_022657
      1 of 6 hits reported for Mus musculus.
    • Hit length
      1,814 bp
    • E Value
      0E0
    • BLAST Score
      1,003.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_022657
      29.93% cov
    • Alignment Length
      543 bp
    • CIGAR string
      543M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:18543368
      NM_130754
    • Hit length
      756 bp
    • E Value
      0E0
    • BLAST Score
      699.2 bits
    • Similarity
      89.93%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_130754
      71.83% cov
    • Alignment Length
      546 bp
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
180
Type
peptide
Locations
Undetermined

Declared organism:
Mus sp.

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:12083589
      NP_073148
      1 of 2 hits reported for Mus musculus.
    • Hit length
      251 aa
    • E Value
      7.35E-101
    • BLAST Score
      370.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_073148
      71.71% cov
    • Alignment Length
      180 aa
    • CIGAR string
      180M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:18543369
      NP_570110
    • Hit length
      251 aa
    • E Value
      5.99E-87
    • BLAST Score
      324.3 bits
    • Similarity
      96.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_570110
      71.71% cov
    • Alignment Length
      180 aa
    • CIGAR string
      14MN12MN6MN7MN15MN10MN30MN29MN33MN4MN10M mismatches: 10 - insertions: 0 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:194037894
      XP_001926560
    • Hit length
      244 aa
    • E Value
      2.12E-73
    • BLAST Score
      279.3 bits
    • Similarity
      85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_001926560
      72.95% cov
    • Alignment Length
      180 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:302564626
      NP_001181066
    • Hit length
      251 aa
    • E Value
      2.55E-72
    • BLAST Score
      275.8 bits
    • Similarity
      82.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_001181066
      71.71% cov
    • Alignment Length
      180 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149712613
      XP_001491469
    • Hit length
      246 aa
    • E Value
      7.6E-71
    • BLAST Score
      270.8 bits
    • Similarity
      81.56%
    • Coverage
      99.44%
    • Alignment (schematic)

      SEQ ID NO 10
      99.44% cov
      XP_001491469
      72.76% cov
    • Alignment Length
      179 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301770151
      XP_002920496
    • Hit length
      245 aa
    • E Value
      2.09E-70
    • BLAST Score
      269.2 bits
    • Similarity
      82.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002920496
      73.06% cov
    • Alignment Length
      180 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297475332
      XP_002687926
    • Hit length
      245 aa
    • E Value
      1.51E-68
    • BLAST Score
      263.1 bits
    • Similarity
      82.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002687926
      73.06% cov
    • Alignment Length
      181 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332249197
      XP_003273749
    • Hit length
      251 aa
    • E Value
      1.81E-68
    • BLAST Score
      262.7 bits
    • Similarity
      80.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_003273749
      71.71% cov
    • Alignment Length
      180 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73997774
      XP_854580
    • Hit length
      312 aa
    • E Value
      1.91E-68
    • BLAST Score
      262.7 bits
    • Similarity
      82.49%
    • Coverage
      98.33%
    • Alignment (schematic)

      SEQ ID NO 10
      98.33% cov
      XP_854580
      56.41% cov
    • Alignment Length
      177 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114642911
      XP_001157070
    • Hit length
      251 aa
    • E Value
      2.21E-68
    • BLAST Score
      262.7 bits
    • Similarity
      80.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_001157070
      71.71% cov
    • Alignment Length
      180 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:10190674
      NP_065689
    • Hit length
      251 aa
    • E Value
      7.55E-68
    • BLAST Score
      260.8 bits
    • Similarity
      80%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_065689
      71.71% cov
    • Alignment Length
      180 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291392687
      XP_002712872
    • Hit length
      252 aa
    • E Value
      1.1E-65
    • BLAST Score
      253.4 bits
    • Similarity
      78.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002712872
      71.43% cov
    • Alignment Length
      180 aa
Occurrence
12 times in PatSeqDB
Tools
PatSeq Finder

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