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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings
197,470 sequences found in this patent (in total)

Displaying 1 - 10 of 197,470 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
8,045
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Binary vector pCMIRT15

    Binary vector pCMIRT15

    • Public DB hit
      GI:333974682
      HQ540318
    • Hit length
      10,759 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      HQ540318
      57.91% cov
    • Alignment Length
      6,231 bp
    • CIGAR string
      6231M1814H mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pVC4-bar

    Cloning vector pVC4-bar

    • Public DB hit
      GI:321268285
      HQ175992
    • Hit length
      11,224 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      HQ175992
      55.51% cov
    • Alignment Length
      6,231 bp
    • CIGAR string
      6231M1814H mismatches: 0 - insertions: 0 - deletions: 0
  • Binary vector pHZPRi-Hyg

    Binary vector pHZPRi-Hyg

    • Public DB hit
      GI:317039155
      HM480107
    • Hit length
      13,972 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      HM480107
      44.6% cov
    • Alignment Length
      6,231 bp
    • CIGAR string
      6231M1814H mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pSIM3

    Cloning vector pSIM3

    • Public DB hit
      GI:312618309
      HM750246
    • Hit length
      15,596 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      HM750246
      39.95% cov
    • Alignment Length
      6,231 bp
  • Cloning vector pSIM1

    Cloning vector pSIM1

    • Public DB hit
      GI:312618303
      HM750245
    • Hit length
      15,584 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      HM750245
      39.98% cov
    • Alignment Length
      6,231 bp
  • Plant RNAi vector pRNAi-LIC

    Plant RNAi vector pRNAi-LIC

    • Public DB hit
      GI:297749917
      GQ870263
    • Hit length
      12,097 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      GQ870263
      51.51% cov
    • Alignment Length
      6,231 bp
  • Expression vector pOsAct2-1-Tnos

    Expression vector pOsAct2-1-Tnos

    • Public DB hit
      GI:169160458
      EU259514
    • Hit length
      10,239 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU259514
      60.86% cov
    • Alignment Length
      6,231 bp
  • Expression vector pOsAct2-Tnos

    Expression vector pOsAct2-Tnos

    • Public DB hit
      GI:169160455
      EU259513
    • Hit length
      11,813 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU259513
      52.75% cov
    • Alignment Length
      6,231 bp
  • Binary vector pCAMBIA1300-VE2-VE3

    Binary vector pCAMBIA1300-VE2-VE3

    • Public DB hit
      GI:213876774
      FJ362602
    • Hit length
      13,725 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      FJ362602
      45.4% cov
    • Alignment Length
      6,231 bp
  • Binary vector pCAMBIA1300-AT

    Binary vector pCAMBIA1300-AT

    • Public DB hit
      GI:213876770
      FJ362601
    • Hit length
      12,886 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      FJ362601
      48.35% cov
    • Alignment Length
      6,231 bp
  • Binary vector pCAMBIA1300-TMT-2S

    Binary vector pCAMBIA1300-TMT-2S

    • Public DB hit
      GI:213876766
      FJ362600
    • Hit length
      11,375 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      FJ362600
      54.78% cov
    • Alignment Length
      6,231 bp
  • Binary vector pCAMBIA1300-VE3-2S

    Binary vector pCAMBIA1300-VE3-2S

    • Public DB hit
      GI:213876762
      FJ362599
    • Hit length
      11,369 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      FJ362599
      54.81% cov
    • Alignment Length
      6,231 bp
  • Binary vector pCAMBIA1300-VE2-7S

    Binary vector pCAMBIA1300-VE2-7S

    • Public DB hit
      GI:213876759
      FJ362598
    • Hit length
      11,288 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      FJ362598
      55.2% cov
    • Alignment Length
      6,231 bp
  • Cloning vector pRGK374

    Cloning vector pRGK374

    • Public DB hit
      GI:210076751
      FJ268733
    • Hit length
      11,746 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      FJ268733
      53.05% cov
    • Alignment Length
      6,231 bp
  • Gateway destination vector pMDC-pRPS2-HPB

    Gateway destination vector pMDC-pRPS2-HPB

    • Public DB hit
      GI:206748369
      FJ172535
    • Hit length
      12,768 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      FJ172535
      48.8% cov
    • Alignment Length
      6,231 bp
  • Gateway destination vector pMDC32-HPB

    Gateway destination vector pMDC32-HPB

    • Public DB hit
      GI:206748364
      FJ172534
    • Hit length
      12,097 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      FJ172534
      51.51% cov
    • Alignment Length
      6,231 bp
  • Binary vector pCAMBIA1300-MAR

    Binary vector pCAMBIA1300-MAR

    • Public DB hit
      GI:194400045
      EU849664
    • Hit length
      10,640 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU849664
      58.56% cov
    • Alignment Length
      6,231 bp
  • Binary vector pCAMBIA1300-LMAR

    Binary vector pCAMBIA1300-LMAR

    • Public DB hit
      GI:194400042
      EU849663
    • Hit length
      11,566 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU849663
      53.87% cov
    • Alignment Length
      6,231 bp
  • Promoter probe vector pRR21

    Promoter probe vector pRR21

    • Public DB hit
      GI:190887195
      EU760495
    • Hit length
      12,827 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU760495
      48.58% cov
    • Alignment Length
      6,231 bp
  • Promoter probe vector pVR37

    Promoter probe vector pVR37

    • Public DB hit
      GI:190364839
      EU744547
    • Hit length
      12,588 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU744547
      49.5% cov
    • Alignment Length
      6,231 bp
  • Transformation vector pC23C

    Transformation vector pC23C

    • Public DB hit
      GI:164421739
      EU315007
    • Hit length
      11,274 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU315007
      55.27% cov
    • Alignment Length
      6,231 bp
  • Binary vector pCCRE

    Binary vector pCCRE

    • Public DB hit
      GI:163961146
      EU327977
    • Hit length
      11,484 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU327977
      54.26% cov
    • Alignment Length
      6,231 bp
  • Binary vector pCLKSCLA25

    Binary vector pCLKSCLA25

    • Public DB hit
      GI:163860181
      EU327498
    • Hit length
      12,186 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU327498
      51.13% cov
    • Alignment Length
      6,231 bp
  • Transformation vector pC23LG

    Transformation vector pC23LG

    • Public DB hit
      GI:163860173
      EU327496
    • Hit length
      11,900 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU327496
      52.36% cov
    • Alignment Length
      6,231 bp
  • Transformation vector pC23LB

    Transformation vector pC23LB

    • Public DB hit
      GI:163860169
      EU327495
    • Hit length
      10,640 bp
    • E Value
      0E0
    • BLAST Score
      11,507.6 bits
    • Similarity
      100%
    • Coverage
      77.45%
    • Alignment (schematic)

      SEQ ID NO 1
      77.45% cov
      EU327495
      58.56% cov
    • Alignment Length
      6,231 bp
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
8,885
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Binary vector pCAMBIA1300-VE2-VE3

    Binary vector pCAMBIA1300-VE2-VE3

    • Public DB hit
      GI:213876774
      FJ362602
    • Hit length
      13,725 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ362602
      48.15% cov
    • Alignment Length
      6,608 bp
    • CIGAR string
      317H6608M1960H mismatches: 0 - insertions: 0 - deletions: 0
  • Binary vector pCAMBIA1300-AT

    Binary vector pCAMBIA1300-AT

    • Public DB hit
      GI:213876770
      FJ362601
    • Hit length
      12,886 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ362601
      51.28% cov
    • Alignment Length
      6,608 bp
    • CIGAR string
      317H6608M1960H mismatches: 0 - insertions: 0 - deletions: 0
  • Binary vector pCAMBIA1300-TMT-2S

    Binary vector pCAMBIA1300-TMT-2S

    • Public DB hit
      GI:213876766
      FJ362600
    • Hit length
      11,375 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ362600
      58.09% cov
    • Alignment Length
      6,608 bp
    • CIGAR string
      317H6608M1960H mismatches: 0 - insertions: 0 - deletions: 0
  • Binary vector pCAMBIA1300-VE3-2S

    Binary vector pCAMBIA1300-VE3-2S

    • Public DB hit
      GI:213876762
      FJ362599
    • Hit length
      11,369 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ362599
      58.12% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCAMBIA1300-VE2-7S

    Binary vector pCAMBIA1300-VE2-7S

    • Public DB hit
      GI:213876759
      FJ362598
    • Hit length
      11,288 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ362598
      58.54% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCAMBIA1300-FAD2b

    Binary vector pCAMBIA1300-FAD2b

    • Public DB hit
      GI:121556823
      DQ658217
    • Hit length
      10,130 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      DQ658217
      65.23% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCAMBIA1300-FAD2A

    Binary vector pCAMBIA1300-FAD2A

    • Public DB hit
      GI:121556820
      DQ658216
    • Hit length
      10,407 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      DQ658216
      63.5% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCAMBIA1300-FAD1A

    Binary vector pCAMBIA1300-FAD1A

    • Public DB hit
      GI:121556817
      DQ658215
    • Hit length
      10,983 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      DQ658215
      60.17% cov
    • Alignment Length
      6,608 bp
  • Cloning vector pC1300intB-35SnosBK

    Cloning vector pC1300intB-35SnosBK

    • Public DB hit
      GI:45645334
      AY560326
    • Hit length
      9,946 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      AY560326
      66.44% cov
    • Alignment Length
      6,608 bp
  • Cloning vector pC1300intB-35SnosEX

    Cloning vector pC1300intB-35SnosEX

    • Public DB hit
      GI:45645331
      AY560325
    • Hit length
      9,937 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      AY560325
      66.5% cov
    • Alignment Length
      6,608 bp
  • Cloning vector pC1300intC

    Cloning vector pC1300intC

    • Public DB hit
      GI:11559661
      AF294978
    • Hit length
      9,182 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      AF294978
      71.97% cov
    • Alignment Length
      6,608 bp
  • Cloning vector pC1300intB

    Cloning vector pC1300intB

    • Public DB hit
      GI:11559659
      AF294977
    • Hit length
      9,170 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      AF294977
      72.06% cov
    • Alignment Length
      6,608 bp
  • Cloning vector pC1300intA

    Cloning vector pC1300intA

    • Public DB hit
      GI:11559657
      AF294976
    • Hit length
      9,148 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      AF294976
      72.23% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCAMBIA-1300

    Binary vector pCAMBIA-1300

    • Public DB hit
      GI:7638064
      AF234296
    • Hit length
      8,958 bp
    • E Value
      0E0
    • BLAST Score
      12,203.8 bits
    • Similarity
      100%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      AF234296
      73.77% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCAMBIA1300-LMAR

    Binary vector pCAMBIA1300-LMAR

    • Public DB hit
      GI:194400042
      EU849663
    • Hit length
      11,566 bp
    • E Value
      0E0
    • BLAST Score
      12,198.2 bits
    • Similarity
      99.98%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      EU849663
      57.13% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCXSN-Myc

    Binary vector pCXSN-Myc

    • Public DB hit
      GI:237652161
      FJ905220
    • Hit length
      10,835 bp
    • E Value
      0E0
    • BLAST Score
      12,196.4 bits
    • Similarity
      99.98%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ905220
      60.98% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCXSN-HA

    Binary vector pCXSN-HA

    • Public DB hit
      GI:237652153
      FJ905218
    • Hit length
      10,832 bp
    • E Value
      0E0
    • BLAST Score
      12,196.4 bits
    • Similarity
      99.98%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ905218
      61% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCXSN-FLAG

    Binary vector pCXSN-FLAG

    • Public DB hit
      GI:237652145
      FJ905216
    • Hit length
      10,829 bp
    • E Value
      0E0
    • BLAST Score
      12,196.4 bits
    • Similarity
      99.98%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ905216
      61.01% cov
    • Alignment Length
      6,608 bp
  • Binary vector pCXSN

    Binary vector pCXSN

    • Public DB hit
      GI:237652137
      FJ905214
    • Hit length
      10,802 bp
    • E Value
      0E0
    • BLAST Score
      12,196.4 bits
    • Similarity
      99.98%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ905214
      61.16% cov
    • Alignment Length
      6,608 bp
  • Binary vector pHZPRi-Hyg

    Binary vector pHZPRi-Hyg

    • Public DB hit
      GI:317039155
      HM480107
    • Hit length
      13,972 bp
    • E Value
      0E0
    • BLAST Score
      12,192.7 bits
    • Similarity
      100%
    • Coverage
      74.31%
    • Alignment (schematic)

      SEQ ID NO 2
      74.31% cov
      HM480107
      47.25% cov
    • Alignment Length
      6,602 bp
  • Gateway destination vector pMDC32-HPB

    Gateway destination vector pMDC32-HPB

    • Public DB hit
      GI:206748364
      FJ172534
    • Hit length
      12,097 bp
    • E Value
      0E0
    • BLAST Score
      12,192.7 bits
    • Similarity
      99.97%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      FJ172534
      54.63% cov
    • Alignment Length
      6,609 bp
  • Binary vector pINDEX3

    Binary vector pINDEX3

    • Public DB hit
      GI:11559672
      AF294982
    • Hit length
      12,942 bp
    • E Value
      0E0
    • BLAST Score
      12,192.7 bits
    • Similarity
      99.92%
    • Coverage
      74.47%
    • Alignment (schematic)

      SEQ ID NO 2
      74.47% cov
      AF294982
      51.14% cov
    • Alignment Length
      6,619 bp
  • Binary vector pINDEX4

    Binary vector pINDEX4

    • Public DB hit
      GI:11559669
      AF294981
    • Hit length
      12,072 bp
    • E Value
      0E0
    • BLAST Score
      12,192.7 bits
    • Similarity
      99.92%
    • Coverage
      74.47%
    • Alignment (schematic)

      SEQ ID NO 2
      74.47% cov
      AF294981
      54.82% cov
    • Alignment Length
      6,619 bp
  • Binary vector pINDEX2

    Binary vector pINDEX2

    • Public DB hit
      GI:11559666
      AF294980
    • Hit length
      14,230 bp
    • E Value
      0E0
    • BLAST Score
      12,192.7 bits
    • Similarity
      99.92%
    • Coverage
      74.47%
    • Alignment (schematic)

      SEQ ID NO 2
      74.47% cov
      AF294980
      46.51% cov
    • Alignment Length
      6,619 bp
  • Binary vector pINDEX1

    Binary vector pINDEX1

    • Public DB hit
      GI:11559663
      AF294979
    • Hit length
      14,203 bp
    • E Value
      0E0
    • BLAST Score
      12,192.7 bits
    • Similarity
      99.92%
    • Coverage
      74.47%
    • Alignment (schematic)

      SEQ ID NO 2
      74.47% cov
      AF294979
      46.6% cov
    • Alignment Length
      6,619 bp
Occurrence
12 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
8,422
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Binary vector pCAMBIA1300-VE2-VE3

    Binary vector pCAMBIA1300-VE2-VE3

    • Public DB hit
      GI:213876774
      FJ362602
    • Hit length
      13,725 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ362602
      47.82% cov
    • Alignment Length
      6,563 bp
    • CIGAR string
      1814H6563M45H mismatches: 0 - insertions: 0 - deletions: 0
  • Binary vector pCAMBIA1300-AT

    Binary vector pCAMBIA1300-AT

    • Public DB hit
      GI:213876770
      FJ362601
    • Hit length
      12,886 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ362601
      50.93% cov
    • Alignment Length
      6,563 bp
    • CIGAR string
      1814H6563M45H mismatches: 0 - insertions: 0 - deletions: 0
  • Binary vector pCAMBIA1300-TMT-2S

    Binary vector pCAMBIA1300-TMT-2S

    • Public DB hit
      GI:213876766
      FJ362600
    • Hit length
      11,375 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ362600
      57.7% cov
    • Alignment Length
      6,563 bp
    • CIGAR string
      1814H6563M45H mismatches: 0 - insertions: 0 - deletions: 0
  • Binary vector pCAMBIA1300-VE3-2S

    Binary vector pCAMBIA1300-VE3-2S

    • Public DB hit
      GI:213876762
      FJ362599
    • Hit length
      11,369 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ362599
      57.73% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCAMBIA1300-VE2-7S

    Binary vector pCAMBIA1300-VE2-7S

    • Public DB hit
      GI:213876759
      FJ362598
    • Hit length
      11,288 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ362598
      58.14% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCAMBIA1300-FAD2b

    Binary vector pCAMBIA1300-FAD2b

    • Public DB hit
      GI:121556823
      DQ658217
    • Hit length
      10,130 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      DQ658217
      64.79% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCAMBIA1300-FAD2A

    Binary vector pCAMBIA1300-FAD2A

    • Public DB hit
      GI:121556820
      DQ658216
    • Hit length
      10,407 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      DQ658216
      63.06% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCAMBIA1300-FAD1A

    Binary vector pCAMBIA1300-FAD1A

    • Public DB hit
      GI:121556817
      DQ658215
    • Hit length
      10,983 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      DQ658215
      59.76% cov
    • Alignment Length
      6,563 bp
  • Cloning vector pC1300intB-35SnosBK

    Cloning vector pC1300intB-35SnosBK

    • Public DB hit
      GI:45645334
      AY560326
    • Hit length
      9,946 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      AY560326
      65.99% cov
    • Alignment Length
      6,563 bp
  • Cloning vector pC1300intB-35SnosEX

    Cloning vector pC1300intB-35SnosEX

    • Public DB hit
      GI:45645331
      AY560325
    • Hit length
      9,937 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      AY560325
      66.05% cov
    • Alignment Length
      6,563 bp
  • Cloning vector pC1300intC

    Cloning vector pC1300intC

    • Public DB hit
      GI:11559661
      AF294978
    • Hit length
      9,182 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      AF294978
      71.48% cov
    • Alignment Length
      6,563 bp
  • Cloning vector pC1300intB

    Cloning vector pC1300intB

    • Public DB hit
      GI:11559659
      AF294977
    • Hit length
      9,170 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      AF294977
      71.57% cov
    • Alignment Length
      6,563 bp
  • Cloning vector pC1300intA

    Cloning vector pC1300intA

    • Public DB hit
      GI:11559657
      AF294976
    • Hit length
      9,148 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      AF294976
      71.74% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCAMBIA-1300

    Binary vector pCAMBIA-1300

    • Public DB hit
      GI:7638064
      AF234296
    • Hit length
      8,958 bp
    • E Value
      0E0
    • BLAST Score
      12,120.7 bits
    • Similarity
      100%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      AF234296
      73.26% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCAMBIA1300-LMAR

    Binary vector pCAMBIA1300-LMAR

    • Public DB hit
      GI:194400042
      EU849663
    • Hit length
      11,566 bp
    • E Value
      0E0
    • BLAST Score
      12,115.1 bits
    • Similarity
      99.98%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      EU849663
      56.74% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCXSN-Myc

    Binary vector pCXSN-Myc

    • Public DB hit
      GI:237652161
      FJ905220
    • Hit length
      10,835 bp
    • E Value
      0E0
    • BLAST Score
      12,113.3 bits
    • Similarity
      99.98%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ905220
      60.56% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCXSN-HA

    Binary vector pCXSN-HA

    • Public DB hit
      GI:237652153
      FJ905218
    • Hit length
      10,832 bp
    • E Value
      0E0
    • BLAST Score
      12,113.3 bits
    • Similarity
      99.98%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ905218
      60.58% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCXSN-FLAG

    Binary vector pCXSN-FLAG

    • Public DB hit
      GI:237652145
      FJ905216
    • Hit length
      10,829 bp
    • E Value
      0E0
    • BLAST Score
      12,113.3 bits
    • Similarity
      99.98%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ905216
      60.6% cov
    • Alignment Length
      6,563 bp
  • Binary vector pCXSN

    Binary vector pCXSN

    • Public DB hit
      GI:237652137
      FJ905214
    • Hit length
      10,802 bp
    • E Value
      0E0
    • BLAST Score
      12,113.3 bits
    • Similarity
      99.98%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ905214
      60.75% cov
    • Alignment Length
      6,563 bp
  • Binary vector pHZPRi-Hyg

    Binary vector pHZPRi-Hyg

    • Public DB hit
      GI:317039155
      HM480107
    • Hit length
      13,972 bp
    • E Value
      0E0
    • BLAST Score
      12,109.6 bits
    • Similarity
      100%
    • Coverage
      77.86%
    • Alignment (schematic)

      SEQ ID NO 3
      77.86% cov
      HM480107
      46.93% cov
    • Alignment Length
      6,557 bp
  • Gateway destination vector pMDC32-HPB

    Gateway destination vector pMDC32-HPB

    • Public DB hit
      GI:206748364
      FJ172534
    • Hit length
      12,097 bp
    • E Value
      0E0
    • BLAST Score
      12,109.6 bits
    • Similarity
      99.97%
    • Coverage
      77.93%
    • Alignment (schematic)

      SEQ ID NO 3
      77.93% cov
      FJ172534
      54.26% cov
    • Alignment Length
      6,564 bp
  • Binary vector pINDEX3

    Binary vector pINDEX3

    • Public DB hit
      GI:11559672
      AF294982
    • Hit length
      12,942 bp
    • E Value
      0E0
    • BLAST Score
      12,109.6 bits
    • Similarity
      99.92%
    • Coverage
      78.03%
    • Alignment (schematic)

      SEQ ID NO 3
      78.03% cov
      AF294982
      50.79% cov
    • Alignment Length
      6,574 bp
  • Binary vector pINDEX4

    Binary vector pINDEX4

    • Public DB hit
      GI:11559669
      AF294981
    • Hit length
      12,072 bp
    • E Value
      0E0
    • BLAST Score
      12,109.6 bits
    • Similarity
      99.92%
    • Coverage
      78.03%
    • Alignment (schematic)

      SEQ ID NO 3
      78.03% cov
      AF294981
      54.45% cov
    • Alignment Length
      6,574 bp
  • Binary vector pINDEX2

    Binary vector pINDEX2

    • Public DB hit
      GI:11559666
      AF294980
    • Hit length
      14,230 bp
    • E Value
      0E0
    • BLAST Score
      12,109.6 bits
    • Similarity
      99.92%
    • Coverage
      78.03%
    • Alignment (schematic)

      SEQ ID NO 3
      78.03% cov
      AF294980
      46.19% cov
    • Alignment Length
      6,574 bp
  • Binary vector pINDEX1

    Binary vector pINDEX1

    • Public DB hit
      GI:11559663
      AF294979
    • Hit length
      14,203 bp
    • E Value
      0E0
    • BLAST Score
      12,109.6 bits
    • Similarity
      99.92%
    • Coverage
      78.03%
    • Alignment (schematic)

      SEQ ID NO 3
      78.03% cov
      AF294979
      46.28% cov
    • Alignment Length
      6,574 bp
Occurrence
12 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
21
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Binary vector pCMIRT15

    Binary vector pCMIRT15

    • Public DB hit
      GI:333974682
      HQ540318
    • Hit length
      10,759 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      HQ540318
      0.2% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:197313392
      CU462826
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      11,331 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CU462826
      0.19% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • BiFC expression vector MAS-SCYCE

    BiFC expression vector MAS-SCYCE

    • Public DB hit
      GI:190336459
      EU796371
    • Hit length
      1,278 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU796371
      1.64% cov
    • Alignment Length
      21 bp
  • BiFC expression vector MAS-SCYCE(R)

    BiFC expression vector MAS-SCYCE(R)

    • Public DB hit
      GI:190336457
      EU796370
    • Hit length
      1,251 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU796370
      1.68% cov
    • Alignment Length
      21 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:164431670
      AM181664
      1 of 2 hits reported for synthetic construct.
    • Hit length
      4,544 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AM181664
      0.46% cov
    • Alignment Length
      21 bp
  • Cloning vector pMSP-3

    Cloning vector pMSP-3

    • Public DB hit
      GI:158347463
      EU181147
    • Hit length
      2,222 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU181147
      0.95% cov
    • Alignment Length
      21 bp
  • Cloning vector pMSP-2

    Cloning vector pMSP-2

    • Public DB hit
      GI:158347462
      EU181146
    • Hit length
      1,786 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU181146
      1.18% cov
    • Alignment Length
      21 bp
  • Cloning vector pMSP-1

    Cloning vector pMSP-1

    • Public DB hit
      GI:158347461
      EU181145
    • Hit length
      1,643 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU181145
      1.28% cov
    • Alignment Length
      21 bp
  • Cloning vector pSAT6.masP.RNAi

    Cloning vector pSAT6.masP.RNAi

    • Public DB hit
      GI:155733555
      EU049863
    • Hit length
      4,790 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU049863
      0.44% cov
    • Alignment Length
      21 bp
  • Cloning vector pSAT6.supP.RNAi

    Cloning vector pSAT6.supP.RNAi

    • Public DB hit
      GI:155733551
      EU049861
    • Hit length
      5,947 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU049861
      0.35% cov
    • Alignment Length
      21 bp
  • Cloning vector pSAT3.masP.RNAi

    Cloning vector pSAT3.masP.RNAi

    • Public DB hit
      GI:155733549
      EU049860
    • Hit length
      4,760 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU049860
      0.44% cov
    • Alignment Length
      21 bp
  • Activation-tagging vector pEnLox

    Activation-tagging vector pEnLox

    • Public DB hit
      GI:106013229
      DQ645630
    • Hit length
      4,648 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ645630
      0.45% cov
    • Alignment Length
      21 bp
  • Gateway vector pFGCGW

    Gateway vector pFGCGW

    • Public DB hit
      GI:78057578
      DQ231581
    • Hit length
      14,831 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ231581
      0.14% cov
    • Alignment Length
      21 bp
  • Gateway vector pFSPGW

    Gateway vector pFSPGW

    • Public DB hit
      GI:78057575
      DQ231580
    • Hit length
      13,566 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ231580
      0.15% cov
    • Alignment Length
      21 bp
  • Cloning vector pGABI1

    Cloning vector pGABI1

    • Public DB hit
      GI:44894182
      AY529716
    • Hit length
      5,334 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY529716
      0.39% cov
    • Alignment Length
      21 bp
  • Cloning vector pSAT3-masP-MCS-masT

    Cloning vector pSAT3-masP-MCS-masT

    • Public DB hit
      GI:63002524
      DQ005465
    • Hit length
      3,406 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ005465
      0.62% cov
    • Alignment Length
      21 bp
  • Cloning vector pSAT3A-masP-MCS-masT

    Cloning vector pSAT3A-masP-MCS-masT

    • Public DB hit
      GI:63002522
      DQ005464
    • Hit length
      3,400 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ005464
      0.62% cov
    • Alignment Length
      21 bp
  • Binary vector pFGC5941

    Binary vector pFGC5941

    • Public DB hit
      GI:32265027
      AY310901
    • Hit length
      11,405 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY310901
      0.18% cov
    • Alignment Length
      21 bp
  • Cloning vector p713-1511

    Cloning vector p713-1511

    • Public DB hit
      GI:57634588
      AY860535
    • Hit length
      13,907 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY860535
      0.15% cov
    • Alignment Length
      21 bp
  • Cloning vector p713-947

    Cloning vector p713-947

    • Public DB hit
      GI:57634583
      AY860534
    • Hit length
      14,789 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY860534
      0.14% cov
    • Alignment Length
      21 bp
  • Cloning vector p713-905

    Cloning vector p713-905

    • Public DB hit
      GI:57634578
      AY860533
    • Hit length
      14,999 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY860533
      0.14% cov
    • Alignment Length
      21 bp
  • Binary vector pFYFPBT

    Binary vector pFYFPBT

    • Public DB hit
      GI:87042829
      DQ370427
    • Hit length
      9,761 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ370427
      0.22% cov
    • Alignment Length
      21 bp
Occurrence
32 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
23
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Cloning vector pAW8ENdeI-C3HA

    Cloning vector pAW8ENdeI-C3HA

    • Public DB hit
      GI:336089660
      JF340118
    • Hit length
      8,433 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF340118
      0.27% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI-CTAP

    Cloning vector pAW8ENdeI-CTAP

    • Public DB hit
      GI:336089658
      JF340117
    • Hit length
      8,892 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF340117
      0.26% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI-cyEGFP

    Cloning vector pAW8ENdeI-cyEGFP

    • Public DB hit
      GI:336089656
      JF340116
    • Hit length
      9,057 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF340116
      0.25% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI

    Cloning vector pAW8ENdeI

    • Public DB hit
      GI:336089653
      JF340115
    • Hit length
      8,289 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF340115
      0.28% cov
    • Alignment Length
      23 bp
  • Gene deletion vector pEMG

    Gene deletion vector pEMG

    • Public DB hit
      GI:335893243
      JF965437
    • Hit length
      3,168 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF965437
      0.73% cov
    • Alignment Length
      23 bp
  • Cloning vector pBOB

    Cloning vector pBOB

    • Public DB hit
      GI:335355349
      JF927991
    • Hit length
      8,730 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF927991
      0.26% cov
    • Alignment Length
      23 bp
  • Expression vector pLoxGentrc

    Expression vector pLoxGentrc

    • Public DB hit
      GI:334265229
      JF934954
    • Hit length
      6,295 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF934954
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV34

    Cloning vector pPLV34

    • Public DB hit
      GI:334085873
      JF909487
    • Hit length
      5,606 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909487
      0.41% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV33

    Cloning vector pPLV33

    • Public DB hit
      GI:334085870
      JF909486
    • Hit length
      5,251 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909486
      0.44% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV32

    Cloning vector pPLV32

    • Public DB hit
      GI:334085867
      JF909485
    • Hit length
      4,898 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909485
      0.47% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV31

    Cloning vector pPLV31

    • Public DB hit
      GI:334085864
      JF909484
    • Hit length
      9,507 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909484
      0.24% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV30

    Cloning vector pPLV30

    • Public DB hit
      GI:334085861
      JF909483
    • Hit length
      9,152 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909483
      0.25% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV29

    Cloning vector pPLV29

    • Public DB hit
      GI:334085858
      JF909482
    • Hit length
      8,799 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909482
      0.26% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV28

    Cloning vector pPLV28

    • Public DB hit
      GI:334085855
      JF909481
    • Hit length
      6,389 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909481
      0.36% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV27

    Cloning vector pPLV27

    • Public DB hit
      GI:334085852
      JF909480
    • Hit length
      6,750 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909480
      0.34% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV26

    Cloning vector pPLV26

    • Public DB hit
      GI:334085849
      JF909479
    • Hit length
      6,395 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909479
      0.36% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV25

    Cloning vector pPLV25

    • Public DB hit
      GI:334085846
      JF909478
    • Hit length
      6,042 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909478
      0.38% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV24

    Cloning vector pPLV24

    • Public DB hit
      GI:334085842
      JF909477
    • Hit length
      6,862 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909477
      0.34% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV23

    Cloning vector pPLV23

    • Public DB hit
      GI:334085838
      JF909476
    • Hit length
      6,507 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909476
      0.35% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV22

    Cloning vector pPLV22

    • Public DB hit
      GI:334085834
      JF909475
    • Hit length
      6,154 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909475
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV21

    Cloning vector pPLV21

    • Public DB hit
      GI:334085830
      JF909474
    • Hit length
      6,151 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909474
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV20

    Cloning vector pPLV20

    • Public DB hit
      GI:334085826
      JF909473
    • Hit length
      5,797 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909473
      0.4% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV19

    Cloning vector pPLV19

    • Public DB hit
      GI:334085822
      JF909472
    • Hit length
      5,443 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909472
      0.42% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV18

    Cloning vector pPLV18

    • Public DB hit
      GI:334085818
      JF909471
    • Hit length
      6,151 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909471
      0.37% cov
    • Alignment Length
      23 bp
  • Cloning vector pPLV17

    Cloning vector pPLV17

    • Public DB hit
      GI:334085814
      JF909470
    • Hit length
      5,797 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      JF909470
      0.4% cov
    • Alignment Length
      23 bp
Occurrence
22 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
27
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Binary vector pCMIRT15

    Binary vector pCMIRT15

    • Public DB hit
      GI:333974682
      HQ540318
    • Hit length
      10,759 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ540318
      0.25% cov
    • Alignment Length
      27 bp
    • CIGAR string
      27M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:197313392
      CU462826
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      11,331 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CU462826
      0.24% cov
    • Alignment Length
      27 bp
    • CIGAR string
      27M mismatches: 0 - insertions: 0 - deletions: 0
  • BiFC expression vector MAS-SCYCE

    BiFC expression vector MAS-SCYCE

    • Public DB hit
      GI:190336459
      EU796371
    • Hit length
      1,278 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU796371
      2.11% cov
    • Alignment Length
      27 bp
  • BiFC expression vector MAS-SCYCE(R)

    BiFC expression vector MAS-SCYCE(R)

    • Public DB hit
      GI:190336457
      EU796370
    • Hit length
      1,251 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU796370
      2.16% cov
    • Alignment Length
      27 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:164431670
      AM181664
      1 of 2 hits reported for synthetic construct.
    • Hit length
      4,544 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AM181664
      0.59% cov
    • Alignment Length
      27 bp
  • Cloning vector pMSP-3

    Cloning vector pMSP-3

    • Public DB hit
      GI:158347463
      EU181147
    • Hit length
      2,222 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU181147
      1.22% cov
    • Alignment Length
      27 bp
  • Cloning vector pMSP-2

    Cloning vector pMSP-2

    • Public DB hit
      GI:158347462
      EU181146
    • Hit length
      1,786 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU181146
      1.51% cov
    • Alignment Length
      27 bp
  • Cloning vector pMSP-1

    Cloning vector pMSP-1

    • Public DB hit
      GI:158347461
      EU181145
    • Hit length
      1,643 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU181145
      1.64% cov
    • Alignment Length
      27 bp
  • Cloning vector pSAT6.masP.RNAi

    Cloning vector pSAT6.masP.RNAi

    • Public DB hit
      GI:155733555
      EU049863
    • Hit length
      4,790 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU049863
      0.56% cov
    • Alignment Length
      27 bp
  • Cloning vector pSAT6.supP.RNAi

    Cloning vector pSAT6.supP.RNAi

    • Public DB hit
      GI:155733551
      EU049861
    • Hit length
      5,947 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU049861
      0.45% cov
    • Alignment Length
      27 bp
  • Cloning vector pSAT3.masP.RNAi

    Cloning vector pSAT3.masP.RNAi

    • Public DB hit
      GI:155733549
      EU049860
    • Hit length
      4,760 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU049860
      0.57% cov
    • Alignment Length
      27 bp
  • Activation-tagging vector pEnLox

    Activation-tagging vector pEnLox

    • Public DB hit
      GI:106013229
      DQ645630
    • Hit length
      4,648 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      DQ645630
      0.58% cov
    • Alignment Length
      27 bp
  • Gateway vector pFGCGW

    Gateway vector pFGCGW

    • Public DB hit
      GI:78057578
      DQ231581
    • Hit length
      14,831 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      DQ231581
      0.18% cov
    • Alignment Length
      27 bp
  • Gateway vector pFSPGW

    Gateway vector pFSPGW

    • Public DB hit
      GI:78057575
      DQ231580
    • Hit length
      13,566 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      DQ231580
      0.2% cov
    • Alignment Length
      27 bp
  • Cloning vector pGABI1

    Cloning vector pGABI1

    • Public DB hit
      GI:44894182
      AY529716
    • Hit length
      5,334 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY529716
      0.51% cov
    • Alignment Length
      27 bp
  • Cloning vector pSAT3-masP-MCS-masT

    Cloning vector pSAT3-masP-MCS-masT

    • Public DB hit
      GI:63002524
      DQ005465
    • Hit length
      3,406 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      DQ005465
      0.79% cov
    • Alignment Length
      27 bp
  • Cloning vector pSAT3A-masP-MCS-masT

    Cloning vector pSAT3A-masP-MCS-masT

    • Public DB hit
      GI:63002522
      DQ005464
    • Hit length
      3,400 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      DQ005464
      0.79% cov
    • Alignment Length
      27 bp
  • Binary vector pFGC5941

    Binary vector pFGC5941

    • Public DB hit
      GI:32265027
      AY310901
    • Hit length
      11,405 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY310901
      0.24% cov
    • Alignment Length
      27 bp
  • Cloning vector p713-1511

    Cloning vector p713-1511

    • Public DB hit
      GI:57634588
      AY860535
    • Hit length
      13,907 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY860535
      0.19% cov
    • Alignment Length
      27 bp
  • Cloning vector p713-947

    Cloning vector p713-947

    • Public DB hit
      GI:57634583
      AY860534
    • Hit length
      14,789 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY860534
      0.18% cov
    • Alignment Length
      27 bp
  • Cloning vector p713-905

    Cloning vector p713-905

    • Public DB hit
      GI:57634578
      AY860533
    • Hit length
      14,999 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY860533
      0.18% cov
    • Alignment Length
      27 bp
  • Binary vector pFYFPBT

    Binary vector pFYFPBT

    • Public DB hit
      GI:87042829
      DQ370427
    • Hit length
      9,761 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      DQ370427
      0.28% cov
    • Alignment Length
      27 bp
Occurrence
32 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
21
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Cloning vector pAW8ENdeI-C3HA

    Cloning vector pAW8ENdeI-C3HA

    • Public DB hit
      GI:336089660
      JF340118
    • Hit length
      8,433 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF340118
      0.25% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI-CTAP

    Cloning vector pAW8ENdeI-CTAP

    • Public DB hit
      GI:336089658
      JF340117
    • Hit length
      8,892 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF340117
      0.24% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI-cyEGFP

    Cloning vector pAW8ENdeI-cyEGFP

    • Public DB hit
      GI:336089656
      JF340116
    • Hit length
      9,057 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF340116
      0.23% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI

    Cloning vector pAW8ENdeI

    • Public DB hit
      GI:336089653
      JF340115
    • Hit length
      8,289 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF340115
      0.25% cov
    • Alignment Length
      21 bp
  • Gene deletion vector pEMG

    Gene deletion vector pEMG

    • Public DB hit
      GI:335893243
      JF965437
    • Hit length
      3,168 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF965437
      0.66% cov
    • Alignment Length
      21 bp
  • Cloning vector pBOB

    Cloning vector pBOB

    • Public DB hit
      GI:335355349
      JF927991
    • Hit length
      8,730 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF927991
      0.24% cov
    • Alignment Length
      21 bp
  • Expression vector pLoxGentrc

    Expression vector pLoxGentrc

    • Public DB hit
      GI:334265229
      JF934954
    • Hit length
      6,295 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF934954
      0.33% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV34

    Cloning vector pPLV34

    • Public DB hit
      GI:334085873
      JF909487
    • Hit length
      5,606 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909487
      0.37% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV33

    Cloning vector pPLV33

    • Public DB hit
      GI:334085870
      JF909486
    • Hit length
      5,251 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909486
      0.4% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV32

    Cloning vector pPLV32

    • Public DB hit
      GI:334085867
      JF909485
    • Hit length
      4,898 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909485
      0.43% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV31

    Cloning vector pPLV31

    • Public DB hit
      GI:334085864
      JF909484
    • Hit length
      9,507 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909484
      0.22% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV30

    Cloning vector pPLV30

    • Public DB hit
      GI:334085861
      JF909483
    • Hit length
      9,152 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909483
      0.23% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV29

    Cloning vector pPLV29

    • Public DB hit
      GI:334085858
      JF909482
    • Hit length
      8,799 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909482
      0.24% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV28

    Cloning vector pPLV28

    • Public DB hit
      GI:334085855
      JF909481
    • Hit length
      6,389 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909481
      0.33% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV27

    Cloning vector pPLV27

    • Public DB hit
      GI:334085852
      JF909480
    • Hit length
      6,750 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909480
      0.31% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV26

    Cloning vector pPLV26

    • Public DB hit
      GI:334085849
      JF909479
    • Hit length
      6,395 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909479
      0.33% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV25

    Cloning vector pPLV25

    • Public DB hit
      GI:334085846
      JF909478
    • Hit length
      6,042 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909478
      0.35% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV24

    Cloning vector pPLV24

    • Public DB hit
      GI:334085842
      JF909477
    • Hit length
      6,862 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909477
      0.31% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV23

    Cloning vector pPLV23

    • Public DB hit
      GI:334085838
      JF909476
    • Hit length
      6,507 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909476
      0.32% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV22

    Cloning vector pPLV22

    • Public DB hit
      GI:334085834
      JF909475
    • Hit length
      6,154 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909475
      0.34% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV21

    Cloning vector pPLV21

    • Public DB hit
      GI:334085830
      JF909474
    • Hit length
      6,151 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909474
      0.34% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV20

    Cloning vector pPLV20

    • Public DB hit
      GI:334085826
      JF909473
    • Hit length
      5,797 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909473
      0.36% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV19

    Cloning vector pPLV19

    • Public DB hit
      GI:334085822
      JF909472
    • Hit length
      5,443 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909472
      0.39% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV18

    Cloning vector pPLV18

    • Public DB hit
      GI:334085818
      JF909471
    • Hit length
      6,151 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909471
      0.34% cov
    • Alignment Length
      21 bp
  • Cloning vector pPLV17

    Cloning vector pPLV17

    • Public DB hit
      GI:334085814
      JF909470
    • Hit length
      5,797 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF909470
      0.36% cov
    • Alignment Length
      21 bp
Occurrence
25 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
23
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Binary vector pCMIRT15

    Binary vector pCMIRT15

    • Public DB hit
      GI:333974682
      HQ540318
    • Hit length
      10,759 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      HQ540318
      0.21% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:197313392
      CU462826
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      11,331 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CU462826
      0.2% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • BiFC expression vector MAS-SCYCE

    BiFC expression vector MAS-SCYCE

    • Public DB hit
      GI:190336459
      EU796371
    • Hit length
      1,278 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU796371
      1.8% cov
    • Alignment Length
      23 bp
  • BiFC expression vector MAS-SCYCE(R)

    BiFC expression vector MAS-SCYCE(R)

    • Public DB hit
      GI:190336457
      EU796370
    • Hit length
      1,251 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU796370
      1.84% cov
    • Alignment Length
      23 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:164431670
      AM181664
      1 of 2 hits reported for synthetic construct.
    • Hit length
      4,544 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AM181664
      0.51% cov
    • Alignment Length
      23 bp
  • Cloning vector pMSP-3

    Cloning vector pMSP-3

    • Public DB hit
      GI:158347463
      EU181147
    • Hit length
      2,222 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU181147
      1.04% cov
    • Alignment Length
      23 bp
  • Cloning vector pMSP-2

    Cloning vector pMSP-2

    • Public DB hit
      GI:158347462
      EU181146
    • Hit length
      1,786 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU181146
      1.29% cov
    • Alignment Length
      23 bp
  • Cloning vector pMSP-1

    Cloning vector pMSP-1

    • Public DB hit
      GI:158347461
      EU181145
    • Hit length
      1,643 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU181145
      1.4% cov
    • Alignment Length
      23 bp
  • Cloning vector pSAT6.masP.RNAi

    Cloning vector pSAT6.masP.RNAi

    • Public DB hit
      GI:155733555
      EU049863
    • Hit length
      4,790 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU049863
      0.48% cov
    • Alignment Length
      23 bp
  • Cloning vector pSAT6.supP.RNAi

    Cloning vector pSAT6.supP.RNAi

    • Public DB hit
      GI:155733551
      EU049861
    • Hit length
      5,947 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU049861
      0.39% cov
    • Alignment Length
      23 bp
  • Cloning vector pSAT3.masP.RNAi

    Cloning vector pSAT3.masP.RNAi

    • Public DB hit
      GI:155733549
      EU049860
    • Hit length
      4,760 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU049860
      0.48% cov
    • Alignment Length
      23 bp
  • Activation-tagging vector pEnLox

    Activation-tagging vector pEnLox

    • Public DB hit
      GI:106013229
      DQ645630
    • Hit length
      4,648 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ645630
      0.49% cov
    • Alignment Length
      23 bp
  • Gateway vector pFGCGW

    Gateway vector pFGCGW

    • Public DB hit
      GI:78057578
      DQ231581
    • Hit length
      14,831 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ231581
      0.16% cov
    • Alignment Length
      23 bp
  • Gateway vector pFSPGW

    Gateway vector pFSPGW

    • Public DB hit
      GI:78057575
      DQ231580
    • Hit length
      13,566 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ231580
      0.17% cov
    • Alignment Length
      23 bp
  • Cloning vector pGABI1

    Cloning vector pGABI1

    • Public DB hit
      GI:44894182
      AY529716
    • Hit length
      5,334 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY529716
      0.43% cov
    • Alignment Length
      23 bp
  • Cloning vector pSAT3-masP-MCS-masT

    Cloning vector pSAT3-masP-MCS-masT

    • Public DB hit
      GI:63002524
      DQ005465
    • Hit length
      3,406 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ005465
      0.68% cov
    • Alignment Length
      23 bp
  • Cloning vector pSAT3A-masP-MCS-masT

    Cloning vector pSAT3A-masP-MCS-masT

    • Public DB hit
      GI:63002522
      DQ005464
    • Hit length
      3,400 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ005464
      0.68% cov
    • Alignment Length
      23 bp
  • Binary vector pFGC5941

    Binary vector pFGC5941

    • Public DB hit
      GI:32265027
      AY310901
    • Hit length
      11,405 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY310901
      0.2% cov
    • Alignment Length
      23 bp
  • Cloning vector p713-1511

    Cloning vector p713-1511

    • Public DB hit
      GI:57634588
      AY860535
    • Hit length
      13,907 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY860535
      0.17% cov
    • Alignment Length
      23 bp
  • Cloning vector p713-947

    Cloning vector p713-947

    • Public DB hit
      GI:57634583
      AY860534
    • Hit length
      14,789 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY860534
      0.16% cov
    • Alignment Length
      23 bp
  • Cloning vector p713-905

    Cloning vector p713-905

    • Public DB hit
      GI:57634578
      AY860533
    • Hit length
      14,999 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY860533
      0.15% cov
    • Alignment Length
      23 bp
  • Binary vector pFYFPBT

    Binary vector pFYFPBT

    • Public DB hit
      GI:87042829
      DQ370427
    • Hit length
      9,761 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ370427
      0.24% cov
    • Alignment Length
      23 bp
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
18
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:325660206
      HQ161058
      1 of 2 hits reported for Oryza sativa Indica Group.
    • Hit length
      1,747 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      HQ161058
      1.03% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pVC4-bar

    Cloning vector pVC4-bar

    • Public DB hit
      GI:321268285
      HQ175992
    • Hit length
      11,224 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      HQ175992
      0.16% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Gateway binary vector R4pGWB759

    Gateway binary vector R4pGWB759

    • Public DB hit
      GI:318067614
      AB608329
    • Hit length
      12,027 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608329
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB753

    Gateway binary vector R4pGWB753

    • Public DB hit
      GI:318067609
      AB608328
    • Hit length
      11,991 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608328
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB750

    Gateway binary vector R4pGWB750

    • Public DB hit
      GI:318067604
      AB608327
    • Hit length
      12,030 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608327
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB743

    Gateway binary vector R4pGWB743

    • Public DB hit
      GI:318067600
      AB608326
    • Hit length
      12,030 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608326
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB740

    Gateway binary vector R4pGWB740

    • Public DB hit
      GI:318067596
      AB608325
    • Hit length
      12,030 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608325
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB735

    Gateway binary vector R4pGWB735

    • Public DB hit
      GI:318067591
      AB608324
    • Hit length
      12,982 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608324
      0.14% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB733

    Gateway binary vector R4pGWB733

    • Public DB hit
      GI:318067586
      AB608323
    • Hit length
      13,125 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608323
      0.14% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB728

    Gateway binary vector R4pGWB728

    • Public DB hit
      GI:318067582
      AB608322
    • Hit length
      11,859 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608322
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB725

    Gateway binary vector R4pGWB725

    • Public DB hit
      GI:318067578
      AB608321
    • Hit length
      11,346 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608321
      0.16% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB722

    Gateway binary vector R4pGWB722

    • Public DB hit
      GI:318067574
      AB608320
    • Hit length
      11,991 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608320
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB719

    Gateway binary vector R4pGWB719

    • Public DB hit
      GI:318067570
      AB608319
    • Hit length
      11,715 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608319
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB716

    Gateway binary vector R4pGWB716

    • Public DB hit
      GI:318067566
      AB608318
    • Hit length
      11,484 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608318
      0.16% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB713

    Gateway binary vector R4pGWB713

    • Public DB hit
      GI:318067562
      AB608317
    • Hit length
      11,433 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608317
      0.16% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB710

    Gateway binary vector R4pGWB710

    • Public DB hit
      GI:318067558
      AB608316
    • Hit length
      11,337 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608316
      0.16% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB707

    Gateway binary vector R4pGWB707

    • Public DB hit
      GI:318067554
      AB608315
    • Hit length
      11,331 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608315
      0.16% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB704

    Gateway binary vector R4pGWB704

    • Public DB hit
      GI:318067549
      AB608314
    • Hit length
      12,042 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608314
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector R4pGWB701

    Gateway binary vector R4pGWB701

    • Public DB hit
      GI:318067545
      AB608313
    • Hit length
      11,313 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608313
      0.16% cov
    • Alignment Length
      18 bp
  • Gateway binary vector pGWB761

    Gateway binary vector pGWB761

    • Public DB hit
      GI:318067541
      AB608312
    • Hit length
      12,876 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608312
      0.14% cov
    • Alignment Length
      18 bp
  • Gateway binary vector pGWB760

    Gateway binary vector pGWB760

    • Public DB hit
      GI:318067536
      AB608311
    • Hit length
      12,877 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608311
      0.14% cov
    • Alignment Length
      18 bp
  • Gateway binary vector pGWB759

    Gateway binary vector pGWB759

    • Public DB hit
      GI:318067531
      AB608310
    • Hit length
      12,036 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608310
      0.15% cov
    • Alignment Length
      18 bp
  • Gateway binary vector pGWB755

    Gateway binary vector pGWB755

    • Public DB hit
      GI:318067527
      AB608309
    • Hit length
      12,840 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608309
      0.14% cov
    • Alignment Length
      18 bp
  • Gateway binary vector pGWB754

    Gateway binary vector pGWB754

    • Public DB hit
      GI:318067522
      AB608308
    • Hit length
      12,841 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB608308
      0.14% cov
    • Alignment Length
      18 bp
Occurrence
22 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
22
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Binary vector pCMIRT15

    Binary vector pCMIRT15

    • Public DB hit
      GI:333974682
      HQ540318
    • Hit length
      10,759 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      HQ540318
      0.2% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:197313392
      CU462826
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      11,331 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CU462826
      0.19% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • BiFC expression vector MAS-SCYCE

    BiFC expression vector MAS-SCYCE

    • Public DB hit
      GI:190336459
      EU796371
    • Hit length
      1,278 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU796371
      1.72% cov
    • Alignment Length
      22 bp
  • BiFC expression vector MAS-SCYCE(R)

    BiFC expression vector MAS-SCYCE(R)

    • Public DB hit
      GI:190336457
      EU796370
    • Hit length
      1,251 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU796370
      1.76% cov
    • Alignment Length
      22 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:164431670
      AM181664
      1 of 2 hits reported for synthetic construct.
    • Hit length
      4,544 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AM181664
      0.48% cov
    • Alignment Length
      22 bp
  • Cloning vector pMSP-3

    Cloning vector pMSP-3

    • Public DB hit
      GI:158347463
      EU181147
    • Hit length
      2,222 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU181147
      0.99% cov
    • Alignment Length
      22 bp
  • Cloning vector pMSP-2

    Cloning vector pMSP-2

    • Public DB hit
      GI:158347462
      EU181146
    • Hit length
      1,786 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU181146
      1.23% cov
    • Alignment Length
      22 bp
  • Cloning vector pMSP-1

    Cloning vector pMSP-1

    • Public DB hit
      GI:158347461
      EU181145
    • Hit length
      1,643 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU181145
      1.34% cov
    • Alignment Length
      22 bp
  • Cloning vector pSAT6.masP.RNAi

    Cloning vector pSAT6.masP.RNAi

    • Public DB hit
      GI:155733555
      EU049863
    • Hit length
      4,790 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU049863
      0.46% cov
    • Alignment Length
      22 bp
  • Cloning vector pSAT6.supP.RNAi

    Cloning vector pSAT6.supP.RNAi

    • Public DB hit
      GI:155733551
      EU049861
    • Hit length
      5,947 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU049861
      0.37% cov
    • Alignment Length
      22 bp
  • Cloning vector pSAT3.masP.RNAi

    Cloning vector pSAT3.masP.RNAi

    • Public DB hit
      GI:155733549
      EU049860
    • Hit length
      4,760 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU049860
      0.46% cov
    • Alignment Length
      22 bp
  • Activation-tagging vector pEnLox

    Activation-tagging vector pEnLox

    • Public DB hit
      GI:106013229
      DQ645630
    • Hit length
      4,648 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ645630
      0.47% cov
    • Alignment Length
      22 bp
  • Gateway vector pFGCGW

    Gateway vector pFGCGW

    • Public DB hit
      GI:78057578
      DQ231581
    • Hit length
      14,831 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ231581
      0.15% cov
    • Alignment Length
      22 bp
  • Gateway vector pFSPGW

    Gateway vector pFSPGW

    • Public DB hit
      GI:78057575
      DQ231580
    • Hit length
      13,566 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ231580
      0.16% cov
    • Alignment Length
      22 bp
  • Cloning vector pGABI1

    Cloning vector pGABI1

    • Public DB hit
      GI:44894182
      AY529716
    • Hit length
      5,334 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY529716
      0.41% cov
    • Alignment Length
      22 bp
  • Cloning vector pSAT3-masP-MCS-masT

    Cloning vector pSAT3-masP-MCS-masT

    • Public DB hit
      GI:63002524
      DQ005465
    • Hit length
      3,406 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ005465
      0.65% cov
    • Alignment Length
      22 bp
  • Cloning vector pSAT3A-masP-MCS-masT

    Cloning vector pSAT3A-masP-MCS-masT

    • Public DB hit
      GI:63002522
      DQ005464
    • Hit length
      3,400 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ005464
      0.65% cov
    • Alignment Length
      22 bp
  • Binary vector pFGC5941

    Binary vector pFGC5941

    • Public DB hit
      GI:32265027
      AY310901
    • Hit length
      11,405 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY310901
      0.19% cov
    • Alignment Length
      22 bp
  • Cloning vector p713-1511

    Cloning vector p713-1511

    • Public DB hit
      GI:57634588
      AY860535
    • Hit length
      13,907 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY860535
      0.16% cov
    • Alignment Length
      22 bp
  • Cloning vector p713-947

    Cloning vector p713-947

    • Public DB hit
      GI:57634583
      AY860534
    • Hit length
      14,789 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY860534
      0.15% cov
    • Alignment Length
      22 bp
  • Cloning vector p713-905

    Cloning vector p713-905

    • Public DB hit
      GI:57634578
      AY860533
    • Hit length
      14,999 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY860533
      0.15% cov
    • Alignment Length
      22 bp
  • Binary vector pFYFPBT

    Binary vector pFYFPBT

    • Public DB hit
      GI:87042829
      DQ370427
    • Hit length
      9,761 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ370427
      0.23% cov
    • Alignment Length
      22 bp
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder

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