Fad2 Mutants And High Oleic Acid Plants

  • Published: Jul 16, 2008
  • Earliest Priority: Jan 11 2007
  • Family: 7
  • Cited Works: 0
  • Cited by: 18
  • Cites: 5
  • Sequences: 20
  • Additional Info:
Data obtained from: NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings DDBJ Pat
20 sequences found in this patent (in total)

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Download sequences in fasta format: 4 peptides 16 DNAs

Displaying 1 - 10 of 20 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
2,666
Sequence Type
DNA
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica rapa subsp. pekinensis

    Brassica rapa subsp. pekinensis

    • Public DB hit
      GI:327420521
      HM189213
    • Hit length
      2,800 bp
    • E Value
      0E0
    • BLAST Score
      3,711 bits
    • Similarity
      92.31%
    • Coverage
      99.85%
    • Alignment (schematic)

      SEQ ID NO 1
      99.85% cov
      HM189213
      92.82% cov
    • Alignment Length
      2,691 bp
    • CIGAR string
      4H11MN5MI4MN6MN55M3I46MN5MN12MDM4D2M4DM2DMD8MN66MIM2I2M3IMIM2I17MN33M3I2MI2MNM3I9MD2MD2MN21MN32MN17M3D2M2D2MD2MD2MD7MN55MN20MINMI15M2I26MN7MN50M2D4MDN21MN4MN9MN51MN7MN20MNM2N13M2DMDM2DM3D4MN2MN25MN13MD6MIMN3MD47MN4MN13MI2MNM2N21MN29MN56MN7MN13MN2MDMNMN25M4D4M2D8MN20MN7MN6MN39MN3MN5MD12MN5M11DM2D23MD2M2N15MN53MN16MN219MD3MI69MNMN14MN203MN65MN6MN16MN58MN3MN5MN2MNMIMD2MN5MN38MN5MN2MN3MNMN2MN53MN23MN26MN26MN2MN20MN8MN2MN183M2DM3DMN2DM5D2MD3M4D3MDMNDMDM2DM2DMD10MD2MNM2NDM2DMD10MD14MIMD16MN152MD10M mismatches: 86 - insertions: 29 - deletions: 92
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:46518252
      AJ459108
    • Hit length
      2,567 bp
    • E Value
      0E0
    • BLAST Score
      3,567 bits
    • Similarity
      92.02%
    • Coverage
      96.81%
    • Alignment (schematic)

      SEQ ID NO 1
      96.81% cov
      AJ459108
      98.75% cov
    • Alignment Length
      2,620 bp
    • CIGAR string
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mismatches: 85 - insertions: 39 - deletions: 85
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:238625276
      FJ952144
    • Hit length
      2,398 bp
    • E Value
      0E0
    • BLAST Score
      3,557.8 bits
    • Similarity
      93.79%
    • Coverage
      90.02%
    • Alignment (schematic)

      SEQ ID NO 1
      90.02% cov
      FJ952144
      98.37% cov
    • Alignment Length
      2,433 bp
    • CIGAR string
      4H11MN5MI4MN6MN55M2IMI45MN3MI2MN12MDM4D2M4DM2DMD8MN66MIM2I2M3IMIM2I17MN30MI8M4IM3I37MN32MN16M3D3M2D2MD2MD2MDN2MDMD2M2D53MN9M4I11MINMI19MN21MN30MI28MN43MN46MN4MD5MI23MNM2N13M2DMDM2DM3D4MN2MN20MN4MN21MN22MN49MN2MI52MN33MN22MN7MN13MN2MDMNMN25M4D4M2D8MN20MN11MI20M3D5MDM2DMDM3DM9D5MD12MN5M11DM2D16M2N5MD3MN15MN363MN293MN513MI3MN3M262H mismatches: 44 - insertions: 33 - deletions: 74
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:224498033
      FJ696650
      1 of 5 hits reported for Brassica juncea.
    • Hit length
      2,526 bp
    • E Value
      0E0
    • BLAST Score
      3,517.1 bits
    • Similarity
      91.99%
    • Coverage
      96.14%
    • Alignment (schematic)

      SEQ ID NO 1
      96.14% cov
      FJ696650
      98.73% cov
    • Alignment Length
      2,598 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
2
Length
1,553
Sequence Type
DNA
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:20520623
      AJ459107
      1 of 2 hits reported for Brassica rapa.
    • Hit length
      1,465 bp
    • E Value
      0E0
    • BLAST Score
      2,399.9 bits
    • Similarity
      96.24%
    • Coverage
      93.82%
    • Alignment (schematic)

      SEQ ID NO 2
      93.82% cov
      AJ459107
      99.59% cov
    • Alignment Length
      1,463 bp
    • CIGAR string
      1H3MN24M2D9MN6MD4MIN6MN55M3I68MN16MN222MN71MN14MN203MN26MN45MN16MN58MN3MN5MN2MNM2N2MN5MN26MN2MN14MN2MN3MNMN2MN44MN2MN5MN14MN14MN47MN2MN14MN5MNMN6MN2MN29MN153MNMIM3N22MD47MI85M95H mismatches: 45 - insertions: 6 - deletions: 4
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:149395005
      EF639848
      1 of 8 hits reported for Brassica juncea.
    • Hit length
      1,445 bp
    • E Value
      0E0
    • BLAST Score
      2,387 bits
    • Similarity
      96.47%
    • Coverage
      92.66%
    • Alignment (schematic)

      SEQ ID NO 2
      92.66% cov
      EF639848
      99.58% cov
    • Alignment Length
      1,444 bp
    • CIGAR string
      1H3MN25MN7MD2MD5MD4MN6MN55M3I30MN34MN239MD3MI181MN108MN4MN60MN6MN75MN3MN5MN2MNM2N2MN5MN38MN5MN2MN3MNMN2MN53MN14MN8MN26MN26MN2MN5MN8MN5MNMN6MN2MN183MNMIM3N22MD114M113H mismatches: 41 - insertions: 5 - deletions: 5
  • Brassica rapa subsp. pekinensis

    Brassica rapa subsp. pekinensis

    • Public DB hit
      GI:327420521
      HM189213
    • Hit length
      2,800 bp
    • E Value
      0E0
    • BLAST Score
      2,375.9 bits
    • Similarity
      97.08%
    • Coverage
      90.34%
    • Alignment (schematic)

      SEQ ID NO 2
      90.34% cov
      HM189213
      50.11% cov
    • Alignment Length
      1,405 bp
    • CIGAR string
      136H47MN16MN219MD3MI71MN14MN203MN65MN6MN16MN58MN3MN5MN2MNM2N2MN5MN38MN5MN2MN3MNMN2MN53MN14MN8MN26MN26MN2MN14MN5MNMN6MN2MN183MNMIM3N22MD213M14H mismatches: 37 - insertions: 2 - deletions: 2
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:238625276
      FJ952144
      1 of 12 hits reported for Brassica napus.
    • Hit length
      2,398 bp
    • E Value
      0E0
    • BLAST Score
      2,128.5 bits
    • Similarity
      99.48%
    • Coverage
      75.02%
    • Alignment (schematic)

      SEQ ID NO 2
      75.02% cov
      FJ952144
      48.58% cov
    • Alignment Length
      1,165 bp
  • Brassica nigra

    Brassica nigra

    • Public DB hit
      GI:299929211
      HM138369
    • Hit length
      2,749 bp
    • E Value
      0E0
    • BLAST Score
      1,755.4 bits
    • Similarity
      90.43%
    • Coverage
      85.51%
    • Alignment (schematic)

      SEQ ID NO 2
      85.51% cov
      HM138369
      48.64% cov
    • Alignment Length
      1,348 bp
  • Brassica carinata

    Brassica carinata

    • Public DB hit
      GI:9313016
      AF124360
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,633.6 bits
    • Similarity
      92.07%
    • Coverage
      74.37%
    • Alignment (schematic)

      SEQ ID NO 2
      74.37% cov
      AF124360
      100% cov
    • Alignment Length
      1,160 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
3
Length
1,155
Sequence Type
DNA
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:238625276
      FJ952144
      1 of 12 hits reported for Brassica napus.
    • Hit length
      2,398 bp
    • E Value
      0E0
    • BLAST Score
      2,128.5 bits
    • Similarity
      99.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FJ952144
      48.17% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      645MN509M mismatches: 1 - insertions: 0 - deletions: 0
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:224498035
      FJ696651
      1 of 8 hits reported for Brassica juncea.
    • Hit length
      2,326 bp
    • E Value
      0E0
    • BLAST Score
      1,978.9 bits
    • Similarity
      97.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FJ696651
      49.66% cov
    • Alignment Length
      1,157 bp
  • Brassica rapa subsp. pekinensis

    Brassica rapa subsp. pekinensis

    • Public DB hit
      GI:327420521
      HM189213
    • Hit length
      2,800 bp
    • E Value
      0E0
    • BLAST Score
      1,956.7 bits
    • Similarity
      97.23%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HM189213
      41.25% cov
    • Alignment Length
      1,157 bp
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:46518252
      AJ459108
      1 of 2 hits reported for Brassica rapa.
    • Hit length
      2,567 bp
    • E Value
      0E0
    • BLAST Score
      1,945.6 bits
    • Similarity
      97.06%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AJ459108
      44.99% cov
    • Alignment Length
      1,156 bp
  • Brassica carinata

    Brassica carinata

    • Public DB hit
      GI:9313016
      AF124360
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,652 bits
    • Similarity
      92.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF124360
      100% cov
    • Alignment Length
      1,160 bp
  • Brassica nigra

    Brassica nigra

    • Public DB hit
      GI:299929211
      HM138369
    • Hit length
      2,749 bp
    • E Value
      0E0
    • BLAST Score
      1,637.3 bits
    • Similarity
      92.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HM138369
      41.91% cov
    • Alignment Length
      1,159 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
4
Length
384
Sequence Type
peptide
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:227455384
      ACP39502
      1 of 8 hits reported for Brassica napus.
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      801.6 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACP39502
      100% cov
    • Alignment Length
      384 aa
    • CIGAR string
      215MN168M mismatches: 1 - insertions: 0 - deletions: 0
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:224498034
      ACN53522
      1 of 5 hits reported for Brassica juncea.
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      798.1 bits
    • Similarity
      99.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACN53522
      100% cov
    • Alignment Length
      384 aa
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:20520624
      CAD30827
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      796.2 bits
    • Similarity
      99.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAD30827
      100% cov
    • Alignment Length
      384 aa
  • Brassica carinata

    Brassica carinata

    • Public DB hit
      GI:4378875
      AAD19742
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      776.9 bits
    • Similarity
      97.66%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAD19742
      100% cov
    • Alignment Length
      384 aa
  • Brassica nigra

    Brassica nigra

    • Public DB hit
      GI:299929212
      ADJ58018
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      753.4 bits
    • Similarity
      95.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ADJ58018
      100% cov
    • Alignment Length
      384 aa
  • Descurainia sophia

    Descurainia sophia

    • Public DB hit
      GI:315936311
      ABS86964
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      730.3 bits
    • Similarity
      94.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ABS86964
      100% cov
    • Alignment Length
      384 aa
  • Capsella rubella

    Capsella rubella

    • Public DB hit
      GI:306976236
      ADN10827
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      725.7 bits
    • Similarity
      94.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ADN10827
      100% cov
    • Alignment Length
      384 aa
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15229956
      NP_187819
      1 of 2 hits reported for Arabidopsis thaliana.
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      725.7 bits
    • Similarity
      94.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_187819
      100% cov
    • Alignment Length
      384 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834002
      XP_002884883
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      724.9 bits
    • Similarity
      94.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002884883
      100% cov
    • Alignment Length
      384 aa
  • Lepidium campestre

    Lepidium campestre

    • Public DB hit
      GI:237692504
      ACR15954
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      718.4 bits
    • Similarity
      93.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACR15954
      100% cov
    • Alignment Length
      384 aa
  • Camelina rumelica

    Camelina rumelica

    • Public DB hit
      GI:306976250
      ADN10834
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      710.3 bits
    • Similarity
      94.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ADN10834
      100% cov
    • Alignment Length
      385 aa
Occurrence
25 times in PatSeqDB
Tools
SEQ ID NO
5
Length
1,561
Sequence Type
DNA
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:20520623
      AJ459107
      1 of 3 hits reported for Brassica rapa.
    • Hit length
      1,465 bp
    • E Value
      0E0
    • BLAST Score
      2,680.6 bits
    • Similarity
      99.66%
    • Coverage
      93.85%
    • Alignment (schematic)

      SEQ ID NO 5
      93.85% cov
      AJ459107
      100% cov
    • Alignment Length
      1,466 bp
    • CIGAR string
      1H55MI370MN707MN194MN2MD133M95H mismatches: 3 - insertions: 1 - deletions: 1
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:149395005
      EF639848
      1 of 8 hits reported for Brassica juncea.
    • Hit length
      1,445 bp
    • E Value
      0E0
    • BLAST Score
      2,529.2 bits
    • Similarity
      98.2%
    • Coverage
      92.7%
    • Alignment (schematic)

      SEQ ID NO 5
      92.7% cov
      EF639848
      100% cov
    • Alignment Length
      1,447 bp
    • CIGAR string
      1H44MN105MN34MN2MN16MN294MN14MN94MN113MN21MN38MN23MN110MN2MN8MN62MN2MN29MN5MN20MN35MN41MN14MN179MN2MD47MD67M113H mismatches: 24 - insertions: 0 - deletions: 2
  • Brassica rapa subsp. pekinensis

    Brassica rapa subsp. pekinensis

    • Public DB hit
      GI:327420521
      HM189213
    • Hit length
      2,800 bp
    • E Value
      0E0
    • BLAST Score
      2,512.6 bits
    • Similarity
      98.93%
    • Coverage
      90.01%
    • Alignment (schematic)

      SEQ ID NO 5
      90.01% cov
      HM189213
      50.11% cov
    • Alignment Length
      1,405 bp
    • CIGAR string
      142H605MN38MN134MN2MN8MN62MN2MN29MN5MN20MN77MN14MN179MN2MD47MD166M14H mismatches: 13 - insertions: 0 - deletions: 2
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:227455385
      FJ907398
      1 of 11 hits reported for Brassica napus.
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      2,128.5 bits
    • Similarity
      99.91%
    • Coverage
      73.99%
    • Alignment (schematic)

      SEQ ID NO 5
      73.99% cov
      FJ907398
      100% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      148H41MN1113M258H mismatches: 1 - insertions: 0 - deletions: 0
  • Brassica nigra

    Brassica nigra

    • Public DB hit
      GI:299929211
      HM138369
    • Hit length
      2,749 bp
    • E Value
      0E0
    • BLAST Score
      1,742.5 bits
    • Similarity
      90.38%
    • Coverage
      85.2%
    • Alignment (schematic)

      SEQ ID NO 5
      85.2% cov
      HM138369
      48.64% cov
    • Alignment Length
      1,351 bp
    • CIGAR string
      144H3MN20MDMIMN2MN5MI2MNMD4MN5MN10MNMN7MN2MN14MN8MN2MN5MN11MN26MN39MN31MN8MN11MN8MN3MNMN26MN38MN14MN20MN14MN11MN41MN2MN2MN14MN2MN2MN14MN20MN39MNMN15MN4MN2MN20MN8MN17MN9MDN2M2N2MD5MD14MN26MN2MN12MN43MN5MN2MN2MN2MN5MN13MNMN13MN8MN7MN4MNMN2MN32M2N10MN5MN26MN50MN26MN8MN2MN14MN8MN2MN29MN5MN14MN2MDNMI42MN57M2IMIMN2IM6I5MN3M2N2MNMDMI2MN2MD2MDMNDMDMN10MI14MIMD13MND37MNI12MNMN7M2I10MD6MI16M87H mismatches: 95 - insertions: 21 - deletions: 14
  • Brassica carinata

    Brassica carinata

    • Public DB hit
      GI:9313016
      AF124360
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,629.9 bits
    • Similarity
      92.16%
    • Coverage
      73.99%
    • Alignment (schematic)

      SEQ ID NO 5
      73.99% cov
      AF124360
      100% cov
    • Alignment Length
      1,160 bp
    • CIGAR string
      148H23MN2MN5MI2MNMD4MN5MN8MNMN9MN2MN11MN2MN8MN2MN5MN11MN26MN39MN31MN8MN20MN3MI2MD2MN23MN38MN14MN20MN14MN11MN38MN5MN2MN5MN8MN2MN2MN14MN17MN2MN39MNMN15MN4MN2MN20MN8MN17MN9M2N2MIMD2MN5MN14MN26MN2MN12MN43MN8MNMDMI2MN5MN15MN13MN8MN7MN4MNMN2MN32MN11MN5MN26MN8MN41MN26MN8MN2MN14MN8MN23MN8MN5MN14MN2MDNMI42MN57M258H mismatches: 81 - insertions: 5 - deletions: 5
Occurrence
27 times in PatSeqDB
Tools
SEQ ID NO
6
Length
1,155
Sequence Type
DNA
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:46518252
      AJ459108
      1 of 3 hits reported for Brassica rapa.
    • Hit length
      2,567 bp
    • E Value
      0E0
    • BLAST Score
      2,128.5 bits
    • Similarity
      99.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AJ459108
      44.99% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      278MN876M mismatches: 1 - insertions: 0 - deletions: 0
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:227455385
      FJ907398
      1 of 12 hits reported for Brassica napus.
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      2,122.9 bits
    • Similarity
      99.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FJ907398
      100% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      41MN944MN168M mismatches: 2 - insertions: 0 - deletions: 0
  • Brassica rapa subsp. pekinensis

    Brassica rapa subsp. pekinensis

    • Public DB hit
      GI:327420521
      HM189213
    • Hit length
      2,800 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      99.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HM189213
      41.25% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      599MN38MN134MN2MN8MN62MN2MN29MN5MN20MN92MN153M mismatches: 11 - insertions: 0 - deletions: 0
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:224498035
      FJ696651
      1 of 7 hits reported for Brassica juncea.
    • Hit length
      2,326 bp
    • E Value
      0E0
    • BLAST Score
      2,039.8 bits
    • Similarity
      98.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FJ696651
      49.66% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      38MN2MN16MN294MN14MN230MN38MN23MN110MN2MN8MN62MN2MN29MN5MN20MN92MN153M mismatches: 17 - insertions: 0 - deletions: 0
  • Brassica carinata

    Brassica carinata

    • Public DB hit
      GI:9313016
      AF124360
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,635.4 bits
    • Similarity
      92.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AF124360
      100% cov
    • Alignment Length
      1,160 bp
    • CIGAR string
      23MN2MN5MI2MNMD4MN5MN8MNMN9MN2MN11MN2MN8MN2MN5MN11MN26MN39MN31MN8MN20MN3MI2MD2MN23MN38MN14MN20MN14MN11MN38MN5MN2MN5MN8MN2MN2MN14MN17MN2MN39MNMN15MN4MN2MN20MN8MN17MN9M2N2MIMD2MN5MN14MN26MN2MN12MN43MN8MNMDMI2MN5MN15MN13MN8MN7MN4MNMN2MN32MN11MN5MN26MN8MN41MN26MN8MN2MN23MN23MN8MN5MN14MN2MDNMI42MN57M mismatches: 80 - insertions: 5 - deletions: 5
  • Brassica nigra

    Brassica nigra

    • Public DB hit
      GI:299929211
      HM138369
    • Hit length
      2,749 bp
    • E Value
      0E0
    • BLAST Score
      1,631.7 bits
    • Similarity
      92.23%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HM138369
      41.91% cov
    • Alignment Length
      1,158 bp
    • CIGAR string
      20MDMIMN2MN5MI2MNMD4MN5MN10MNMN7MN2MN14MN8MN2MN5MN11MN26MN39MN31MN8MN11MN8MN3MNMN26MN38MN14MN20MN14MN11MN41MN2MN2MN14MN2MN2MN14MN20MN39MNMN15MN4MN2MN20MN8MN17MN9MDN2M2N2MD5MD14MN26MN2MN12MN43MN5MN2MN2MN2MN5MN13MNMN13MN8MN7MN4MNMN2MN32M2N10MN5MN26MN50MN26MN8MN2MN23MN2MN29MN5MN14MN2MDNMI42MN57M mismatches: 81 - insertions: 3 - deletions: 6
Occurrence
31 times in PatSeqDB
Tools
SEQ ID NO
7
Length
384
Sequence Type
peptide
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:20520624
      CAD30827
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      803.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CAD30827
      100% cov
    • Alignment Length
      384 aa
    • CIGAR string
      384M mismatches: 0 - insertions: 0 - deletions: 0
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:224498034
      ACN53522
      1 of 5 hits reported for Brassica juncea.
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      801.2 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      ACN53522
      100% cov
    • Alignment Length
      384 aa
    • CIGAR string
      19MN364M mismatches: 1 - insertions: 0 - deletions: 0
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:227455388
      ACP39504
      1 of 8 hits reported for Brassica napus.
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      800.4 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      ACP39504
      100% cov
    • Alignment Length
      384 aa
    • CIGAR string
      240MN4MN138M mismatches: 2 - insertions: 0 - deletions: 0
  • Brassica carinata

    Brassica carinata

    • Public DB hit
      GI:4378875
      AAD19742
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      777.7 bits
    • Similarity
      97.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AAD19742
      100% cov
    • Alignment Length
      384 aa
  • Brassica nigra

    Brassica nigra

    • Public DB hit
      GI:299929212
      ADJ58018
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      756.5 bits
    • Similarity
      96.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      ADJ58018
      100% cov
    • Alignment Length
      384 aa
  • Descurainia sophia

    Descurainia sophia

    • Public DB hit
      GI:315936311
      ABS86964
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      731.1 bits
    • Similarity
      94.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      ABS86964
      100% cov
    • Alignment Length
      384 aa
  • Capsella rubella

    Capsella rubella

    • Public DB hit
      GI:306976236
      ADN10827
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      ADN10827
      100% cov
    • Alignment Length
      384 aa
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15229956
      NP_187819
      1 of 2 hits reported for Arabidopsis thaliana.
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      726.1 bits
    • Similarity
      94.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NP_187819
      100% cov
    • Alignment Length
      384 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834002
      XP_002884883
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      725.3 bits
    • Similarity
      94.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XP_002884883
      100% cov
    • Alignment Length
      384 aa
  • Lepidium campestre

    Lepidium campestre

    • Public DB hit
      GI:237692504
      ACR15954
    • Hit length
      383 aa
    • E Value
      0E0
    • BLAST Score
      719.5 bits
    • Similarity
      93.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      ACR15954
      100% cov
    • Alignment Length
      384 aa
  • Camelina rumelica

    Camelina rumelica

    • Public DB hit
      GI:306976250
      ADN10834
    • Hit length
      384 aa
    • E Value
      0E0
    • BLAST Score
      711.8 bits
    • Similarity
      94.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      ADN10834
      100% cov
    • Alignment Length
      385 aa
Occurrence
98 times in PatSeqDB
Tools
SEQ ID NO
8
Length
2,614
Sequence Type
DNA
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica rapa subsp. pekinensis

    Brassica rapa subsp. pekinensis

    • Public DB hit
      GI:327420521
      HM189213
    • Hit length
      2,800 bp
    • E Value
      0E0
    • BLAST Score
      4,534.6 bits
    • Similarity
      98.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      HM189213
      92.75% cov
    • Alignment Length
      2,617 bp
    • CIGAR string
      8MI127MD48MN34MN73MD5MN6MN12MD2MD2MN77M2D10MNMD64M4D87MD34MDM2D26MN69MN68MN8MN9MD6MIMN3MD52MN12MN6MN207MD97MN628MN38MN134MN2MN8MN62MN2MN29MN5MN20MN92MN179MN19MD30MD149MI15M mismatches: 27 - insertions: 3 - deletions: 20
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:46518252
      AJ459108
    • Hit length
      2,567 bp
    • E Value
      0E0
    • BLAST Score
      4,525.4 bits
    • Similarity
      98.9%
    • Coverage
      96.98%
    • Alignment (schematic)

      SEQ ID NO 8
      96.98% cov
      AJ459108
      98.68% cov
    • Alignment Length
      2,539 bp
    • CIGAR string
      8MI12MI286MN12MN78MD19MD53MN29MN70MD90MI44MN49MN18MN8MN9MD6MIMN3MD52MN12MN6MN108MN7MN49MN41MN404MN902MN19MD116M79H mismatches: 18 - insertions: 4 - deletions: 6
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:224498033
      FJ696650
      1 of 5 hits reported for Brassica juncea.
    • Hit length
      2,526 bp
    • E Value
      0E0
    • BLAST Score
      4,309.4 bits
    • Similarity
      97.74%
    • Coverage
      96.29%
    • Alignment (schematic)

      SEQ ID NO 8
      96.29% cov
      FJ696650
      98.65% cov
    • Alignment Length
      2,519 bp
    • CIGAR string
      8MI156MN19MN34MN73MD178MN100MD121MN4MD5MI80MN3MD83MN210MN7MN7M3D2M2DM13D2MD66M2D4MN57MN2MN16MN294MN14MN230MN38MN23MN110MN2MN8MN62MN2MN29MN5MN20MN92MN179MN19MD30MD67M97H mismatches: 28 - insertions: 2 - deletions: 27
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:238625276
      FJ952144
    • Hit length
      2,398 bp
    • E Value
      0E0
    • BLAST Score
      3,856.9 bits
    • Similarity
      96.21%
    • Coverage
      90.74%
    • Alignment (schematic)

      SEQ ID NO 8
      90.74% cov
      FJ952144
      97.79% cov
    • Alignment Length
      2,377 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
9
Length
1,561
Sequence Type
DNA
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:20520623
      AJ459107
      1 of 3 hits reported for Brassica rapa.
    • Hit length
      1,465 bp
    • E Value
      0E0
    • BLAST Score
      2,680.6 bits
    • Similarity
      99.66%
    • Coverage
      93.85%
    • Alignment (schematic)

      SEQ ID NO 9
      93.85% cov
      AJ459107
      100% cov
    • Alignment Length
      1,466 bp
    • CIGAR string
      1H55MI370MN707MN194MN2MD133M95H mismatches: 3 - insertions: 1 - deletions: 1
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:149395005
      EF639848
      1 of 8 hits reported for Brassica juncea.
    • Hit length
      1,445 bp
    • E Value
      0E0
    • BLAST Score
      2,529.2 bits
    • Similarity
      98.2%
    • Coverage
      92.7%
    • Alignment (schematic)

      SEQ ID NO 9
      92.7% cov
      EF639848
      100% cov
    • Alignment Length
      1,447 bp
    • CIGAR string
      1H44MN105MN34MN2MN16MN294MN14MN94MN113MN21MN38MN23MN110MN2MN8MN62MN2MN29MN5MN20MN35MN41MN14MN179MN2MD47MD67M113H mismatches: 24 - insertions: 0 - deletions: 2
  • Brassica rapa subsp. pekinensis

    Brassica rapa subsp. pekinensis

    • Public DB hit
      GI:327420521
      HM189213
    • Hit length
      2,800 bp
    • E Value
      0E0
    • BLAST Score
      2,512.6 bits
    • Similarity
      98.93%
    • Coverage
      90.01%
    • Alignment (schematic)

      SEQ ID NO 9
      90.01% cov
      HM189213
      50.11% cov
    • Alignment Length
      1,405 bp
    • CIGAR string
      142H605MN38MN134MN2MN8MN62MN2MN29MN5MN20MN77MN14MN179MN2MD47MD166M14H mismatches: 13 - insertions: 0 - deletions: 2
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:227455385
      FJ907398
      1 of 11 hits reported for Brassica napus.
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      2,128.5 bits
    • Similarity
      99.91%
    • Coverage
      73.99%
    • Alignment (schematic)

      SEQ ID NO 9
      73.99% cov
      FJ907398
      100% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      148H41MN1113M258H mismatches: 1 - insertions: 0 - deletions: 0
  • Brassica nigra

    Brassica nigra

    • Public DB hit
      GI:299929211
      HM138369
    • Hit length
      2,749 bp
    • E Value
      0E0
    • BLAST Score
      1,742.5 bits
    • Similarity
      90.38%
    • Coverage
      85.2%
    • Alignment (schematic)

      SEQ ID NO 9
      85.2% cov
      HM138369
      48.64% cov
    • Alignment Length
      1,351 bp
    • CIGAR string
      144H3MN20MDMIMN2MN5MI2MNMD4MN5MN10MNMN7MN2MN14MN8MN2MN5MN11MN26MN39MN31MN8MN11MN8MN3MNMN26MN38MN14MN20MN14MN11MN41MN2MN2MN14MN2MN2MN14MN20MN39MNMN15MN4MN2MN20MN8MN17MN9MDN2M2N2MD5MD14MN26MN2MN12MN43MN5MN2MN2MN2MN5MN13MNMN13MN8MN7MN4MNMN2MN32M2N10MN5MN26MN50MN26MN8MN2MN14MN8MN2MN29MN5MN14MN2MDNMI42MN57M2IMIMN2IM6I5MN3M2N2MNMDMI2MN2MD2MDMNDMDMN10MI14MIMD13MND37MNI12MNMN7M2I10MD6MI16M87H mismatches: 95 - insertions: 21 - deletions: 14
  • Brassica carinata

    Brassica carinata

    • Public DB hit
      GI:9313016
      AF124360
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,629.9 bits
    • Similarity
      92.16%
    • Coverage
      73.99%
    • Alignment (schematic)

      SEQ ID NO 9
      73.99% cov
      AF124360
      100% cov
    • Alignment Length
      1,160 bp
    • CIGAR string
      148H23MN2MN5MI2MNMD4MN5MN8MNMN9MN2MN11MN2MN8MN2MN5MN11MN26MN39MN31MN8MN20MN3MI2MD2MN23MN38MN14MN20MN14MN11MN38MN5MN2MN5MN8MN2MN2MN14MN17MN2MN39MNMN15MN4MN2MN20MN8MN17MN9M2N2MIMD2MN5MN14MN26MN2MN12MN43MN8MNMDMI2MN5MN15MN13MN8MN7MN4MNMN2MN32MN11MN5MN26MN8MN41MN26MN8MN2MN14MN8MN23MN8MN5MN14MN2MDNMI42MN57M258H mismatches: 81 - insertions: 5 - deletions: 5
Occurrence
27 times in PatSeqDB
Tools
SEQ ID NO
10
Length
1,155
Sequence Type
DNA
Locations
Undetermined
Declared organism
Brassica napus (rape)
Determined organism
  • Brassica rapa

    Brassica rapa

    • Public DB hit
      GI:46518252
      AJ459108
      1 of 3 hits reported for Brassica rapa.
    • Hit length
      2,567 bp
    • E Value
      0E0
    • BLAST Score
      2,128.5 bits
    • Similarity
      99.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AJ459108
      44.99% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      278MN876M mismatches: 1 - insertions: 0 - deletions: 0
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:227455385
      FJ907398
      1 of 12 hits reported for Brassica napus.
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      2,122.9 bits
    • Similarity
      99.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      FJ907398
      100% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      41MN944MN168M mismatches: 2 - insertions: 0 - deletions: 0
  • Brassica rapa subsp. pekinensis

    Brassica rapa subsp. pekinensis

    • Public DB hit
      GI:327420521
      HM189213
    • Hit length
      2,800 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      99.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      HM189213
      41.25% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      599MN38MN134MN2MN8MN62MN2MN29MN5MN20MN92MN153M mismatches: 11 - insertions: 0 - deletions: 0
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:224498035
      FJ696651
      1 of 7 hits reported for Brassica juncea.
    • Hit length
      2,326 bp
    • E Value
      0E0
    • BLAST Score
      2,039.8 bits
    • Similarity
      98.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      FJ696651
      49.66% cov
    • Alignment Length
      1,155 bp
    • CIGAR string
      38MN2MN16MN294MN14MN230MN38MN23MN110MN2MN8MN62MN2MN29MN5MN20MN92MN153M mismatches: 17 - insertions: 0 - deletions: 0
  • Brassica carinata

    Brassica carinata

    • Public DB hit
      GI:9313016
      AF124360
    • Hit length
      1,155 bp
    • E Value
      0E0
    • BLAST Score
      1,635.4 bits
    • Similarity
      92.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AF124360
      100% cov
    • Alignment Length
      1,160 bp
    • CIGAR string
      23MN2MN5MI2MNMD4MN5MN8MNMN9MN2MN11MN2MN8MN2MN5MN11MN26MN39MN31MN8MN20MN3MI2MD2MN23MN38MN14MN20MN14MN11MN38MN5MN2MN5MN8MN2MN2MN14MN17MN2MN39MNMN15MN4MN2MN20MN8MN17MN9M2N2MIMD2MN5MN14MN26MN2MN12MN43MN8MNMDMI2MN5MN15MN13MN8MN7MN4MNMN2MN32MN11MN5MN26MN8MN41MN26MN8MN2MN23MN23MN8MN5MN14MN2MDNMI42MN57M mismatches: 80 - insertions: 5 - deletions: 5
  • Brassica nigra

    Brassica nigra

    • Public DB hit
      GI:299929211
      HM138369
    • Hit length
      2,749 bp
    • E Value
      0E0
    • BLAST Score
      1,631.7 bits
    • Similarity
      92.23%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      HM138369
      41.91% cov
    • Alignment Length
      1,158 bp
    • CIGAR string
      20MDMIMN2MN5MI2MNMD4MN5MN10MNMN7MN2MN14MN8MN2MN5MN11MN26MN39MN31MN8MN11MN8MN3MNMN26MN38MN14MN20MN14MN11MN41MN2MN2MN14MN2MN2MN14MN20MN39MNMN15MN4MN2MN20MN8MN17MN9MDN2M2N2MD5MD14MN26MN2MN12MN43MN5MN2MN2MN2MN5MN13MNMN13MN8MN7MN4MNMN2MN32M2N10MN5MN26MN50MN26MN8MN2MN23MN2MN29MN5MN14MN2MDNMI42MN57M mismatches: 81 - insertions: 3 - deletions: 6
Occurrence
31 times in PatSeqDB
Tools

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