Loading...

Search for Biological Sequences disclosed in Patents

Discover PatSeq Finder: Search and analyse similar sequence matches in the Lens PatSeq database effortlessly using PatSeq Finder. Scan 480M+ biological sequences disclosed in patents on a privacy-assured platform and give your IP strategy the edge.

View PatSeq Dismiss
Data obtained from: USPTO Fulltext
70 sequences found in this patent (in total)

Displaying 1 - 10 of 70 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
934
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:30697807
      NM_105585
      1 of 5 hits reported for Arabidopsis thaliana.
    • Hit length
      934 bp
    • E Value
      0E0
    • BLAST Score
      1,725.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_105585
      100% cov
    • Alignment Length
      934 bp
    • CIGAR string
      934M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297841646
      XM_002888659
    • Hit length
      931 bp
    • E Value
      0E0
    • BLAST Score
      1,461.8 bits
    • Similarity
      94.99%
    • Coverage
      99.89%
    • Alignment (schematic)

      SEQ ID NO 1
      99.89% cov
      XM_002888659
      100% cov
    • Alignment Length
      938 bp
Occurrence
7 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
181
Type
peptide
Locations
Detailed Description, Drawings, Summary

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15222228
      NP_177078
      1 of 2 hits reported for Arabidopsis thaliana.
    • Hit length
      181 aa
    • E Value
      8.16E-103
    • BLAST Score
      377.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_177078
      100% cov
    • Alignment Length
      181 aa
    • CIGAR string
      181M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297841647
      XP_002888705
    • Hit length
      181 aa
    • E Value
      3.13E-95
    • BLAST Score
      351.7 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002888705
      100% cov
    • Alignment Length
      181 aa
    • CIGAR string
      9MN7MN63MN21MN77M mismatches: 4 - insertions: 0 - deletions: 0
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:71068380
      AAZ23116
    • Hit length
      179 aa
    • E Value
      4.27E-91
    • BLAST Score
      338.2 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAZ23116
      100% cov
    • Alignment Length
      181 aa
  • Brassica oleracea var. alboglabra

    Brassica oleracea var. alboglabra

    • Public DB hit
      GI:195970390
      ACG60679
    • Hit length
      184 aa
    • E Value
      3.53E-82
    • BLAST Score
      308.5 bits
    • Similarity
      95.32%
    • Coverage
      94.48%
    • Alignment (schematic)

      SEQ ID NO 2
      94.48% cov
      ACG60679
      92.39% cov
    • Alignment Length
      171 aa
  • Lepidium africanum

    Lepidium africanum

    • Public DB hit
      GI:58891157
      AAW83049
      1 of 2 hits reported for Lepidium africanum.
    • Hit length
      188 aa
    • E Value
      3.81E-82
    • BLAST Score
      308.5 bits
    • Similarity
      97.7%
    • Coverage
      95.58%
    • Alignment (schematic)

      SEQ ID NO 2
      95.58% cov
      AAW83049
      92.02% cov
    • Alignment Length
      174 aa
  • Carsonia sparsifolia

    Carsonia sparsifolia

    • Public DB hit
      GI:58891192
      AAW83050
    • Hit length
      185 aa
    • E Value
      9.49E-72
    • BLAST Score
      273.9 bits
    • Similarity
      86.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAW83050
      100% cov
    • Alignment Length
      188 aa
  • Cynophalla flexuosa

    Cynophalla flexuosa

    • Public DB hit
      GI:58891059
      AAW83045
    • Hit length
      186 aa
    • E Value
      3.38E-59
    • BLAST Score
      232.3 bits
    • Similarity
      79.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAW83045
      100% cov
    • Alignment Length
      187 aa
  • Brassica oleracea

    Brassica oleracea

    • Public DB hit
      GI:51872145
      AAU12182
    • Hit length
      127 aa
    • E Value
      3.01E-58
    • BLAST Score
      228.8 bits
    • Similarity
      96.88%
    • Coverage
      70.72%
    • Alignment (schematic)

      SEQ ID NO 2
      70.72% cov
      AAU12182
      100% cov
    • Alignment Length
      128 aa
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255541982
      XP_002512055
    • Hit length
      193 aa
    • E Value
      5.32E-55
    • BLAST Score
      218 bits
    • Similarity
      79.76%
    • Coverage
      92.27%
    • Alignment (schematic)

      SEQ ID NO 2
      92.27% cov
      XP_002512055
      84.46% cov
    • Alignment Length
      168 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225423420
      XP_002263611
      1 of 2 hits reported for Vitis vinifera.
    • Hit length
      168 aa
    • E Value
      6.72E-54
    • BLAST Score
      214.5 bits
    • Similarity
      77.78%
    • Coverage
      93.92%
    • Alignment (schematic)

      SEQ ID NO 2
      93.92% cov
      XP_002263611
      98.81% cov
    • Alignment Length
      171 aa
  • Gossypium hirsutum

    Gossypium hirsutum

    • Public DB hit
      GI:58891213
      AAW83051
      1 of 2 hits reported for Gossypium hirsutum.
    • Hit length
      166 aa
    • E Value
      2.45E-53
    • BLAST Score
      212.6 bits
    • Similarity
      82.05%
    • Coverage
      84.53%
    • Alignment (schematic)

      SEQ ID NO 2
      84.53% cov
      AAW83051
      93.37% cov
    • Alignment Length
      156 aa
  • Petunia x hybrida

    Petunia x hybrida

    • Public DB hit
      GI:58891129
      AAW83048
    • Hit length
      162 aa
    • E Value
      1.71E-52
    • BLAST Score
      209.9 bits
    • Similarity
      80.13%
    • Coverage
      84.53%
    • Alignment (schematic)

      SEQ ID NO 2
      84.53% cov
      AAW83048
      95.06% cov
    • Alignment Length
      156 aa
  • Nicotiana tabacum

    Nicotiana tabacum

    • Public DB hit
      GI:58891083
      AAW83046
      1 of 2 hits reported for Nicotiana tabacum.
    • Hit length
      181 aa
    • E Value
      4.69E-52
    • BLAST Score
      208.4 bits
    • Similarity
      76%
    • Coverage
      93.92%
    • Alignment (schematic)

      SEQ ID NO 2
      93.92% cov
      AAW83046
      92.27% cov
    • Alignment Length
      175 aa
  • Aquilegia formosa

    Aquilegia formosa

    • Public DB hit
      GI:58891028
      AAW83044
    • Hit length
      174 aa
    • E Value
      1.03E-50
    • BLAST Score
      203.8 bits
    • Similarity
      81.41%
    • Coverage
      84.53%
    • Alignment (schematic)

      SEQ ID NO 2
      84.53% cov
      AAW83044
      89.08% cov
    • Alignment Length
      156 aa
  • Antirrhinum majus

    Antirrhinum majus

    • Public DB hit
      GI:41745674
      AAS10180
    • Hit length
      165 aa
    • E Value
      6.73E-48
    • BLAST Score
      194.5 bits
    • Similarity
      83.22%
    • Coverage
      77.35%
    • Alignment (schematic)

      SEQ ID NO 2
      77.35% cov
      AAS10180
      85.45% cov
    • Alignment Length
      143 aa
Occurrence
68 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
828
Type
nucleotide
Locations
Undetermined

Declared organism:
Amborella trichopoda

Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
196
Type
peptide
Locations
Undetermined

Declared organism:
Amborella trichopoda

Determined organism:
  • Amborella trichopoda

    Amborella trichopoda

    • Public DB hit
      GI:60649824
      CAI47004
    • Hit length
      196 aa
    • E Value
      5.71E-113
    • BLAST Score
      411 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAI47004
      100% cov
    • Alignment Length
      196 aa
    • CIGAR string
      196M mismatches: 0 - insertions: 0 - deletions: 0
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255541982
      XP_002512055
    • Hit length
      193 aa
    • E Value
      1.52E-51
    • BLAST Score
      206.8 bits
    • Similarity
      80.38%
    • Coverage
      80.1%
    • Alignment (schematic)

      SEQ ID NO 4
      80.1% cov
      XP_002512055
      80.83% cov
    • Alignment Length
      158 aa
    • CIGAR string
      2M2NMNMDN10MNMN4MN2MN2MN11MN5MN2MN2MNMNMNINM2NMNM2NMN2MNMN5MDNM6N2MNMN23MN4MN11MN7M2NM4N2M4N39H mismatches: 46 - insertions: 1 - deletions: 2
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225423420
      XP_002263611
      1 of 2 hits reported for Vitis vinifera.
    • Hit length
      168 aa
    • E Value
      2.26E-51
    • BLAST Score
      206.5 bits
    • Similarity
      79.11%
    • Coverage
      80.1%
    • Alignment (schematic)

      SEQ ID NO 4
      80.1% cov
      XP_002263611
      92.86% cov
    • Alignment Length
      158 aa
    • CIGAR string
      2M2NMNMDN10MNMN4MN2MN2MN11MN5MN2MN2MNMNMNI2NMNM2NMNM2NMNMN5MDNM4NMN2MNMN23MN3M2N11MN7M2NM4N2M4N39H mismatches: 47 - insertions: 1 - deletions: 2
  • Gossypium hirsutum

    Gossypium hirsutum

    • Public DB hit
      GI:58891235
      AAW83052
      1 of 2 hits reported for Gossypium hirsutum.
    • Hit length
      170 aa
    • E Value
      1.76E-50
    • BLAST Score
      203.4 bits
    • Similarity
      81.82%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 4
      71.43% cov
      AAW83052
      84.12% cov
    • Alignment Length
      143 aa
  • Lilium longiflorum

    Lilium longiflorum

    • Public DB hit
      GI:145105281
      ABP35569
    • Hit length
      190 aa
    • E Value
      3.08E-50
    • BLAST Score
      202.6 bits
    • Similarity
      79.62%
    • Coverage
      79.08%
    • Alignment (schematic)

      SEQ ID NO 4
      79.08% cov
      ABP35569
      82.11% cov
    • Alignment Length
      157 aa
  • Cynophalla flexuosa

    Cynophalla flexuosa

    • Public DB hit
      GI:58891059
      AAW83045
    • Hit length
      186 aa
    • E Value
      5.22E-49
    • BLAST Score
      198.7 bits
    • Similarity
      79.33%
    • Coverage
      72.96%
    • Alignment (schematic)

      SEQ ID NO 4
      72.96% cov
      AAW83045
      80.65% cov
    • Alignment Length
      150 aa
  • Antirrhinum majus

    Antirrhinum majus

    • Public DB hit
      GI:41745674
      AAS10180
    • Hit length
      165 aa
    • E Value
      8.4E-48
    • BLAST Score
      194.5 bits
    • Similarity
      79.72%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 4
      71.43% cov
      AAS10180
      86.06% cov
    • Alignment Length
      143 aa
  • Petunia x hybrida

    Petunia x hybrida

    • Public DB hit
      GI:58891129
      AAW83048
    • Hit length
      162 aa
    • E Value
      2.17E-47
    • BLAST Score
      193.4 bits
    • Similarity
      75.78%
    • Coverage
      80.61%
    • Alignment (schematic)

      SEQ ID NO 4
      80.61% cov
      AAW83048
      98.15% cov
    • Alignment Length
      161 aa
  • Aquilegia formosa

    Aquilegia formosa

    • Public DB hit
      GI:58891028
      AAW83044
    • Hit length
      174 aa
    • E Value
      5.22E-47
    • BLAST Score
      191.8 bits
    • Similarity
      75.3%
    • Coverage
      83.16%
    • Alignment (schematic)

      SEQ ID NO 4
      83.16% cov
      AAW83044
      94.83% cov
    • Alignment Length
      166 aa
  • Nicotiana tabacum

    Nicotiana tabacum

    • Public DB hit
      GI:58891083
      AAW83046
      1 of 2 hits reported for Nicotiana tabacum.
    • Hit length
      181 aa
    • E Value
      1.94E-46
    • BLAST Score
      189.9 bits
    • Similarity
      76.92%
    • Coverage
      78.06%
    • Alignment (schematic)

      SEQ ID NO 4
      78.06% cov
      AAW83046
      83.43% cov
    • Alignment Length
      156 aa
  • Zea mays

    Zea mays

    • Public DB hit
      GI:308080052
      NP_001183591
    • Hit length
      206 aa
    • E Value
      1.07E-45
    • BLAST Score
      187.6 bits
    • Similarity
      75%
    • Coverage
      76.53%
    • Alignment (schematic)

      SEQ ID NO 4
      76.53% cov
      NP_001183591
      74.76% cov
    • Alignment Length
      156 aa
Occurrence
21 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
732
Type
nucleotide
Locations
Undetermined

Declared organism:
Antirrhinum majus

Determined organism:
  • Antirrhinum majus

    Antirrhinum majus

    • Public DB hit
      GI:41745673
      AY451399
    • Hit length
      732 bp
    • E Value
      0E0
    • BLAST Score
      1,352.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY451399
      100% cov
    • Alignment Length
      732 bp
    • CIGAR string
      732M mismatches: 0 - insertions: 0 - deletions: 0
  • Nicotiana langsdorffii x Nicotiana sanderae

    Nicotiana langsdorffii x Nicotiana sanderae

    • Public DB hit
      GI:37542842
      AY071845
    • Hit length
      937 bp
    • E Value
      1.11E-97
    • BLAST Score
      366.8 bits
    • Similarity
      81.8%
    • Coverage
      62.98%
    • Alignment (schematic)

      SEQ ID NO 5
      62.98% cov
      AY071845
      47.6% cov
    • Alignment Length
      467 bp
    • CIGAR string
      21H8MN3MDM2D6MDM2D5MN8MN13M2N7MN18MN7MN10MN4MN8MN14MIN3MDMN2MN2MN2MN3MNMN8MN5M2N7MN4M2NMN6MN2MN2MDNMI6MN5MD2MIMN3MN3MNMD3MIN5M4D3MDM2DM2DN2MN3MN4MD2MIMN2MN2MN2MN4MN9MN2MN2MN8MN32MN20MN2MN8MN14MN5MN2MN2MN5MN5MN14MN2MI7MD16MN2MN6M250H mismatches: 58 - insertions: 6 - deletions: 21
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
165
Type
peptide
Locations
Undetermined

Declared organism:
Antirrhinum majus

Determined organism:
  • Antirrhinum majus

    Antirrhinum majus

    • Public DB hit
      GI:41745674
      AAS10180
    • Hit length
      165 aa
    • E Value
      5.76E-93
    • BLAST Score
      344 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AAS10180
      100% cov
    • Alignment Length
      165 aa
    • CIGAR string
      165M mismatches: 0 - insertions: 0 - deletions: 0
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225423420
      XP_002263611
      1 of 2 hits reported for Vitis vinifera.
    • Hit length
      168 aa
    • E Value
      4.92E-65
    • BLAST Score
      251.1 bits
    • Similarity
      93.79%
    • Coverage
      87.88%
    • Alignment (schematic)

      SEQ ID NO 6
      87.88% cov
      XP_002263611
      85.12% cov
    • Alignment Length
      145 aa
    • CIGAR string
      8H12MN12MN21MN3M2N3MN2M2DM2NM2NMN2MN3MN8MN33MN24MNM12H mismatches: 16 - insertions: 0 - deletions: 2
  • Petunia x hybrida

    Petunia x hybrida

    • Public DB hit
      GI:58891129
      AAW83048
    • Hit length
      162 aa
    • E Value
      8.39E-65
    • BLAST Score
      250.4 bits
    • Similarity
      92.16%
    • Coverage
      92.73%
    • Alignment (schematic)

      SEQ ID NO 6
      92.73% cov
      AAW83048
      93.21% cov
    • Alignment Length
      153 aa
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255541982
      XP_002512055
    • Hit length
      193 aa
    • E Value
      1.23E-63
    • BLAST Score
      246.5 bits
    • Similarity
      92.36%
    • Coverage
      87.27%
    • Alignment (schematic)

      SEQ ID NO 6
      87.27% cov
      XP_002512055
      73.58% cov
    • Alignment Length
      144 aa
  • Nicotiana tabacum

    Nicotiana tabacum

    • Public DB hit
      GI:58891107
      AAW83047
      1 of 2 hits reported for Nicotiana tabacum.
    • Hit length
      181 aa
    • E Value
      2.65E-63
    • BLAST Score
      245.4 bits
    • Similarity
      86.5%
    • Coverage
      98.79%
    • Alignment (schematic)

      SEQ ID NO 6
      98.79% cov
      AAW83047
      87.29% cov
    • Alignment Length
      163 aa
  • Gossypium hirsutum

    Gossypium hirsutum

    • Public DB hit
      GI:58891213
      AAW83051
      1 of 2 hits reported for Gossypium hirsutum.
    • Hit length
      166 aa
    • E Value
      1.37E-61
    • BLAST Score
      240 bits
    • Similarity
      87.26%
    • Coverage
      94.55%
    • Alignment (schematic)

      SEQ ID NO 6
      94.55% cov
      AAW83051
      94.58% cov
    • Alignment Length
      157 aa
  • Cynophalla flexuosa

    Cynophalla flexuosa

    • Public DB hit
      GI:58891059
      AAW83045
    • Hit length
      186 aa
    • E Value
      3.93E-60
    • BLAST Score
      235 bits
    • Similarity
      84.28%
    • Coverage
      93.33%
    • Alignment (schematic)

      SEQ ID NO 6
      93.33% cov
      AAW83045
      85.48% cov
    • Alignment Length
      159 aa
  • Nicotiana langsdorffii x Nicotiana sanderae

    Nicotiana langsdorffii x Nicotiana sanderae

    • Public DB hit
      GI:37542843
      AAL60054
    • Hit length
      181 aa
    • E Value
      4.07E-57
    • BLAST Score
      224.9 bits
    • Similarity
      82.21%
    • Coverage
      98.79%
    • Alignment (schematic)

      SEQ ID NO 6
      98.79% cov
      AAL60054
      87.29% cov
    • Alignment Length
      163 aa
  • Aquilegia formosa

    Aquilegia formosa

    • Public DB hit
      GI:58891028
      AAW83044
    • Hit length
      174 aa
    • E Value
      3.68E-54
    • BLAST Score
      215.3 bits
    • Similarity
      84.42%
    • Coverage
      92.12%
    • Alignment (schematic)

      SEQ ID NO 6
      92.12% cov
      AAW83044
      86.78% cov
    • Alignment Length
      154 aa
  • Carsonia sparsifolia

    Carsonia sparsifolia

    • Public DB hit
      GI:58891192
      AAW83050
    • Hit length
      185 aa
    • E Value
      1.14E-53
    • BLAST Score
      213.4 bits
    • Similarity
      79.25%
    • Coverage
      92.73%
    • Alignment (schematic)

      SEQ ID NO 6
      92.73% cov
      AAW83050
      84.86% cov
    • Alignment Length
      159 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224112084
      XP_002316077
      1 of 2 hits reported for Populus trichocarpa.
    • Hit length
      180 aa
    • E Value
      1.52E-52
    • BLAST Score
      209.9 bits
    • Similarity
      76.25%
    • Coverage
      87.88%
    • Alignment (schematic)

      SEQ ID NO 6
      87.88% cov
      XP_002316077
      87.78% cov
    • Alignment Length
      160 aa
  • Eschscholzia californica

    Eschscholzia californica

    • Public DB hit
      GI:187453151
      CAQ17052
    • Hit length
      185 aa
    • E Value
      4.32E-51
    • BLAST Score
      204.9 bits
    • Similarity
      78.18%
    • Coverage
      98.18%
    • Alignment (schematic)

      SEQ ID NO 6
      98.18% cov
      CAQ17052
      89.19% cov
    • Alignment Length
      165 aa
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:71068380
      AAZ23116
    • Hit length
      179 aa
    • E Value
      6.03E-51
    • BLAST Score
      204.5 bits
    • Similarity
      80.5%
    • Coverage
      95.15%
    • Alignment (schematic)

      SEQ ID NO 6
      95.15% cov
      AAZ23116
      86.03% cov
    • Alignment Length
      159 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297841647
      XP_002888705
    • Hit length
      181 aa
    • E Value
      7.49E-51
    • BLAST Score
      204.1 bits
    • Similarity
      80.5%
    • Coverage
      95.15%
    • Alignment (schematic)

      SEQ ID NO 6
      95.15% cov
      XP_002888705
      85.08% cov
    • Alignment Length
      159 aa
  • Betula papyrifera

    Betula papyrifera

    • Public DB hit
      GI:158633384
      ABW75762
    • Hit length
      125 aa
    • E Value
      8.78E-50
    • BLAST Score
      200.7 bits
    • Similarity
      89.6%
    • Coverage
      75.76%
    • Alignment (schematic)

      SEQ ID NO 6
      75.76% cov
      ABW75762
      100% cov
    • Alignment Length
      125 aa
  • Quercus alba

    Quercus alba

    • Public DB hit
      GI:158633268
      ABW75704
    • Hit length
      125 aa
    • E Value
      1.38E-49
    • BLAST Score
      199.9 bits
    • Similarity
      90.4%
    • Coverage
      75.76%
    • Alignment (schematic)

      SEQ ID NO 6
      75.76% cov
      ABW75704
      100% cov
    • Alignment Length
      125 aa
Occurrence
21 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
525
Type
nucleotide
Locations
Undetermined

Declared organism:
Aquilegia formosa

Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
174
Type
peptide
Locations
Undetermined

Declared organism:
Aquilegia formosa

Determined organism:
  • Aquilegia formosa

    Aquilegia formosa

    • Public DB hit
      GI:58891028
      AAW83044
    • Hit length
      174 aa
    • E Value
      5.36E-99
    • BLAST Score
      364 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAW83044
      100% cov
    • Alignment Length
      174 aa
    • CIGAR string
      174M mismatches: 0 - insertions: 0 - deletions: 0
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255541982
      XP_002512055
    • Hit length
      193 aa
    • E Value
      1.68E-63
    • BLAST Score
      246.1 bits
    • Similarity
      88.27%
    • Coverage
      93.1%
    • Alignment (schematic)

      SEQ ID NO 8
      93.1% cov
      XP_002512055
      82.38% cov
    • Alignment Length
      162 aa
    • CIGAR string
      3MNM2N11MN11MN11MNMN8MN8MND2N3M5N12MD2NMN2M2NMDN6MN10MN9MN12MN6MNMNMNMN2MN3M3NM12H mismatches: 34 - insertions: 0 - deletions: 3
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225423420
      XP_002263611
      1 of 2 hits reported for Vitis vinifera.
    • Hit length
      168 aa
    • E Value
      8.57E-63
    • BLAST Score
      243.8 bits
    • Similarity
      87.12%
    • Coverage
      93.68%
    • Alignment (schematic)

      SEQ ID NO 8
      93.68% cov
      XP_002263611
      95.24% cov
    • Alignment Length
      163 aa
    • CIGAR string
      3MNM2N11MN11MN11MNMN8MN8MND2NM3NM2N13MD2NMN2M2NMDN6MN10MN9MN12MN6MNMNMNMN2MN2M4N2M11H mismatches: 35 - insertions: 0 - deletions: 3
  • Petunia x hybrida

    Petunia x hybrida

    • Public DB hit
      GI:58891129
      AAW83048
    • Hit length
      162 aa
    • E Value
      5.21E-56
    • BLAST Score
      221.5 bits
    • Similarity
      84.66%
    • Coverage
      93.1%
    • Alignment (schematic)

      SEQ ID NO 8
      93.1% cov
      AAW83048
      99.38% cov
    • Alignment Length
      163 aa
  • Nicotiana tabacum

    Nicotiana tabacum

    • Public DB hit
      GI:58891107
      AAW83047
      1 of 2 hits reported for Nicotiana tabacum.
    • Hit length
      181 aa
    • E Value
      6.41E-56
    • BLAST Score
      221.1 bits
    • Similarity
      82.21%
    • Coverage
      93.1%
    • Alignment (schematic)

      SEQ ID NO 8
      93.1% cov
      AAW83047
      87.29% cov
    • Alignment Length
      163 aa
  • Gossypium hirsutum

    Gossypium hirsutum

    • Public DB hit
      GI:58891213
      AAW83051
      1 of 2 hits reported for Gossypium hirsutum.
    • Hit length
      166 aa
    • E Value
      1.04E-55
    • BLAST Score
      220.3 bits
    • Similarity
      82.21%
    • Coverage
      92.53%
    • Alignment (schematic)

      SEQ ID NO 8
      92.53% cov
      AAW83051
      97.59% cov
    • Alignment Length
      163 aa
  • Cynophalla flexuosa

    Cynophalla flexuosa

    • Public DB hit
      GI:58891059
      AAW83045
    • Hit length
      186 aa
    • E Value
      2E-53
    • BLAST Score
      212.6 bits
    • Similarity
      85.14%
    • Coverage
      82.76%
    • Alignment (schematic)

      SEQ ID NO 8
      82.76% cov
      AAW83045
      79.57% cov
    • Alignment Length
      148 aa
  • Antirrhinum majus

    Antirrhinum majus

    • Public DB hit
      GI:41745674
      AAS10180
    • Hit length
      165 aa
    • E Value
      2.1E-53
    • BLAST Score
      212.6 bits
    • Similarity
      86.11%
    • Coverage
      82.18%
    • Alignment (schematic)

      SEQ ID NO 8
      82.18% cov
      AAS10180
      86.06% cov
    • Alignment Length
      144 aa
  • Carsonia sparsifolia

    Carsonia sparsifolia

    • Public DB hit
      GI:58891192
      AAW83050
    • Hit length
      185 aa
    • E Value
      1.78E-51
    • BLAST Score
      206.5 bits
    • Similarity
      79.11%
    • Coverage
      87.36%
    • Alignment (schematic)

      SEQ ID NO 8
      87.36% cov
      AAW83050
      84.86% cov
    • Alignment Length
      158 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224099012
      XP_002311351
    • Hit length
      180 aa
    • E Value
      2.52E-51
    • BLAST Score
      205.7 bits
    • Similarity
      77.78%
    • Coverage
      88.51%
    • Alignment (schematic)

      SEQ ID NO 8
      88.51% cov
      XP_002311351
      92.78% cov
    • Alignment Length
      171 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297841647
      XP_002888705
    • Hit length
      181 aa
    • E Value
      6.81E-51
    • BLAST Score
      204.5 bits
    • Similarity
      80.77%
    • Coverage
      89.08%
    • Alignment (schematic)

      SEQ ID NO 8
      89.08% cov
      XP_002888705
      84.53% cov
    • Alignment Length
      156 aa
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:71068380
      AAZ23116
    • Hit length
      179 aa
    • E Value
      7.98E-51
    • BLAST Score
      204.1 bits
    • Similarity
      80.77%
    • Coverage
      89.08%
    • Alignment (schematic)

      SEQ ID NO 8
      89.08% cov
      AAZ23116
      85.47% cov
    • Alignment Length
      156 aa
  • Nicotiana langsdorffii x Nicotiana sanderae

    Nicotiana langsdorffii x Nicotiana sanderae

    • Public DB hit
      GI:37542843
      AAL60054
    • Hit length
      181 aa
    • E Value
      2.17E-50
    • BLAST Score
      202.6 bits
    • Similarity
      76.54%
    • Coverage
      93.1%
    • Alignment (schematic)

      SEQ ID NO 8
      93.1% cov
      AAL60054
      87.29% cov
    • Alignment Length
      162 aa
  • Eschscholzia californica

    Eschscholzia californica

    • Public DB hit
      GI:187453151
      CAQ17052
    • Hit length
      185 aa
    • E Value
      3.06E-50
    • BLAST Score
      202.2 bits
    • Similarity
      77.71%
    • Coverage
      93.1%
    • Alignment (schematic)

      SEQ ID NO 8
      93.1% cov
      CAQ17052
      89.19% cov
    • Alignment Length
      166 aa
  • Brassica oleracea var. alboglabra

    Brassica oleracea var. alboglabra

    • Public DB hit
      GI:195970390
      ACG60679
    • Hit length
      184 aa
    • E Value
      2.57E-49
    • BLAST Score
      199.1 bits
    • Similarity
      79.62%
    • Coverage
      89.66%
    • Alignment (schematic)

      SEQ ID NO 8
      89.66% cov
      ACG60679
      83.7% cov
    • Alignment Length
      157 aa
  • Lepidium africanum

    Lepidium africanum

    • Public DB hit
      GI:58891157
      AAW83049
      1 of 2 hits reported for Lepidium africanum.
    • Hit length
      188 aa
    • E Value
      4.45E-49
    • BLAST Score
      198.4 bits
    • Similarity
      79.49%
    • Coverage
      89.08%
    • Alignment (schematic)

      SEQ ID NO 8
      89.08% cov
      AAW83049
      81.38% cov
    • Alignment Length
      156 aa
Occurrence
21 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
561
Type
nucleotide
Locations
Undetermined

Declared organism:
Cynophalla flexuosa

Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
186
Type
peptide
Locations
Undetermined

Declared organism:
Cynophalla flexuosa

Determined organism:
  • Cynophalla flexuosa

    Cynophalla flexuosa

    • Public DB hit
      GI:58891059
      AAW83045
    • Hit length
      186 aa
    • E Value
      1.56E-105
    • BLAST Score
      386 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAW83045
      100% cov
    • Alignment Length
      186 aa
    • CIGAR string
      186M mismatches: 0 - insertions: 0 - deletions: 0
  • Carsonia sparsifolia

    Carsonia sparsifolia

    • Public DB hit
      GI:58891192
      AAW83050
    • Hit length
      185 aa
    • E Value
      4.67E-71
    • BLAST Score
      271.6 bits
    • Similarity
      82.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAW83050
      100% cov
    • Alignment Length
      187 aa
    • CIGAR string
      6M2NMNMNMDN2MN10MNMN6M2N13MN5M4N2MN5M2NMN4MN3MNMI6MN14M2NMNMN9MN10MN27MN6MND3MNM3NMNM3NMN2M mismatches: 39 - insertions: 1 - deletions: 2
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255541982
      XP_002512055
    • Hit length
      193 aa
    • E Value
      4.91E-68
    • BLAST Score
      261.5 bits
    • Similarity
      85.63%
    • Coverage
      93.55%
    • Alignment (schematic)

      SEQ ID NO 10
      93.55% cov
      XP_002512055
      85.49% cov
    • Alignment Length
      174 aa
    • CIGAR string
      6M2N2M3NM2D24MN18MN4MN7M2NM4D3MD3N4MN7M2NM2DNMN46MN12M2N2MNM2NM12H mismatches: 24 - insertions: 0 - deletions: 9
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225423420
      XP_002263611
      1 of 2 hits reported for Vitis vinifera.
    • Hit length
      168 aa
    • E Value
      9.03E-68
    • BLAST Score
      260.8 bits
    • Similarity
      85.8%
    • Coverage
      94.62%
    • Alignment (schematic)

      SEQ ID NO 10
      94.62% cov
      XP_002263611
      99.4% cov
    • Alignment Length
      176 aa
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:71068380
      AAZ23116
    • Hit length
      179 aa
    • E Value
      9.66E-66
    • BLAST Score
      253.8 bits
    • Similarity
      82.26%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAZ23116
      100% cov
    • Alignment Length
      186 aa
  • Gossypium hirsutum

    Gossypium hirsutum

    • Public DB hit
      GI:58891235
      AAW83052
      1 of 2 hits reported for Gossypium hirsutum.
    • Hit length
      170 aa
    • E Value
      5.13E-65
    • BLAST Score
      251.5 bits
    • Similarity
      86.67%
    • Coverage
      88.71%
    • Alignment (schematic)

      SEQ ID NO 10
      88.71% cov
      AAW83052
      94.12% cov
    • Alignment Length
      165 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297841647
      XP_002888705
    • Hit length
      181 aa
    • E Value
      1.21E-64
    • BLAST Score
      250.4 bits
    • Similarity
      80.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002888705
      100% cov
    • Alignment Length
      187 aa
  • Brassica oleracea var. alboglabra

    Brassica oleracea var. alboglabra

    • Public DB hit
      GI:195970390
      ACG60679
    • Hit length
      184 aa
    • E Value
      5.91E-62
    • BLAST Score
      241.5 bits
    • Similarity
      84.27%
    • Coverage
      95.7%
    • Alignment (schematic)

      SEQ ID NO 10
      95.7% cov
      ACG60679
      92.93% cov
    • Alignment Length
      178 aa
  • Lepidium africanum

    Lepidium africanum

    • Public DB hit
      GI:51872147
      AAU12183
      1 of 2 hits reported for Lepidium africanum.
    • Hit length
      173 aa
    • E Value
      5.63E-61
    • BLAST Score
      238 bits
    • Similarity
      80.45%
    • Coverage
      95.7%
    • Alignment (schematic)

      SEQ ID NO 10
      95.7% cov
      AAU12183
      100% cov
    • Alignment Length
      179 aa
  • Petunia x hybrida

    Petunia x hybrida

    • Public DB hit
      GI:58891129
      AAW83048
    • Hit length
      162 aa
    • E Value
      1.47E-60
    • BLAST Score
      236.9 bits
    • Similarity
      87.1%
    • Coverage
      83.33%
    • Alignment (schematic)

      SEQ ID NO 10
      83.33% cov
      AAW83048
      92.59% cov
    • Alignment Length
      155 aa
  • Nicotiana tabacum

    Nicotiana tabacum

    • Public DB hit
      GI:58891107
      AAW83047
      1 of 2 hits reported for Nicotiana tabacum.
    • Hit length
      181 aa
    • E Value
      2.36E-60
    • BLAST Score
      236.1 bits
    • Similarity
      79.55%
    • Coverage
      94.62%
    • Alignment (schematic)

      SEQ ID NO 10
      94.62% cov
      AAW83047
      92.82% cov
    • Alignment Length
      176 aa
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15222228
      NP_177078
      1 of 2 hits reported for Arabidopsis thaliana.
    • Hit length
      181 aa
    • E Value
      4.72E-60
    • BLAST Score
      235 bits
    • Similarity
      78.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_177078
      100% cov
    • Alignment Length
      187 aa
  • Antirrhinum majus

    Antirrhinum majus

    • Public DB hit
      GI:41745674
      AAS10180
    • Hit length
      165 aa
    • E Value
      1.58E-59
    • BLAST Score
      233.4 bits
    • Similarity
      85.71%
    • Coverage
      82.8%
    • Alignment (schematic)

      SEQ ID NO 10
      82.8% cov
      AAS10180
      90.3% cov
    • Alignment Length
      154 aa
  • Aquilegia formosa

    Aquilegia formosa

    • Public DB hit
      GI:58891028
      AAW83044
    • Hit length
      174 aa
    • E Value
      8.62E-58
    • BLAST Score
      227.6 bits
    • Similarity
      85.99%
    • Coverage
      83.87%
    • Alignment (schematic)

      SEQ ID NO 10
      83.87% cov
      AAW83044
      87.36% cov
    • Alignment Length
      157 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224099012
      XP_002311351
    • Hit length
      180 aa
    • E Value
      1.3E-56
    • BLAST Score
      223.8 bits
    • Similarity
      76.76%
    • Coverage
      91.94%
    • Alignment (schematic)

      SEQ ID NO 10
      91.94% cov
      XP_002311351
      98.33% cov
    • Alignment Length
      185 aa
Occurrence
21 times in PatSeqDB
Tools
PatSeq Finder

Filter Sequences

Clear

Sign in to the Lens

Forgot Password? Register New Account

Language Improvements

We have been busy updating our localisation and all existing languages.

Much of these translations have been done using machine translation with a check from a native speaker, however not all elements of the UI have been checked for each language. If you see a term that is not translated correctly or should be improved, please contact Support.

  Don't show again
Feedback