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Search for Biological Sequences disclosed in Patents

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Data obtained from: USPTO Fulltext
20 sequences found in this patent (in total)

Displaying 1 - 10 of 20 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,488
Type
nucleotide
Locations
Drawings

Declared organism:
Artificial

Determined organism:
  • Cloning vector pGFPuv

    Cloning vector pGFPuv

    • Public DB hit
      GI:1490528
      U62636
    • Hit length
      3,337 bp
    • E Value
      0E0
    • BLAST Score
      1,927.2 bits
    • Similarity
      100%
    • Coverage
      70.09%
    • Alignment (schematic)

      SEQ ID NO 1
      70.09% cov
      U62636
      31.26% cov
    • Alignment Length
      1,043 bp
    • CIGAR string
      261H1043M184H mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pGFPCR

    Cloning vector pGFPCR

    • Public DB hit
      GI:2281525
      AF007834
    • Hit length
      3,340 bp
    • E Value
      0E0
    • BLAST Score
      1,873.6 bits
    • Similarity
      99.04%
    • Coverage
      70.09%
    • Alignment (schematic)

      SEQ ID NO 1
      70.09% cov
      AF007834
      31.32% cov
    • Alignment Length
      1,046 bp
    • CIGAR string
      261H227M3IM2NM2NM2NMN805M184H mismatches: 7 - insertions: 3 - deletions: 0
  • Cloning vector pGFP

    Cloning vector pGFP

    • Public DB hit
      GI:603191
      U17997
    • Hit length
      3,344 bp
    • E Value
      0E0
    • BLAST Score
      1,744.4 bits
    • Similarity
      96.76%
    • Coverage
      70.09%
    • Alignment (schematic)

      SEQ ID NO 1
      70.09% cov
      U17997
      31.4% cov
    • Alignment Length
      1,050 bp
    • CIGAR string
      261H466M2NMN2MN2MN60MNMN7MN27MN39MNMN44MN9MNMN2MN31MN29MN13MNMN18M2N81MN36MNMN29MN29MN2MN8M2I2M2IMIMIMI71M184H mismatches: 27 - insertions: 7 - deletions: 0
  • Cloning vector pGT3

    Cloning vector pGT3

    • Public DB hit
      GI:157841128
      EU182593
    • Hit length
      2,931 bp
    • E Value
      0E0
    • BLAST Score
      1,737 bits
    • Similarity
      99.37%
    • Coverage
      64.38%
    • Alignment (schematic)

      SEQ ID NO 1
      64.38% cov
      EU182593
      32.69% cov
    • Alignment Length
      958 bp
  • Cloning vector pGFPTA

    Cloning vector pGFPTA

    • Public DB hit
      GI:7415878
      AB038146
    • Hit length
      3,249 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      99.37%
    • Coverage
      64.31%
    • Alignment (schematic)

      SEQ ID NO 1
      64.31% cov
      AB038146
      29.46% cov
    • Alignment Length
      957 bp
  • Cloning vector pGT2

    Cloning vector pGT2

    • Public DB hit
      GI:115336276
      EF025088
    • Hit length
      3,267 bp
    • E Value
      0E0
    • BLAST Score
      1,700 bits
    • Similarity
      99.05%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 1
      63.64% cov
      EF025088
      28.99% cov
    • Alignment Length
      947 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
18
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Danio rerio

    Danio rerio

    • Public DB hit
      GI:115260526
      CR759764
      1 of 2 hits reported for Danio rerio.
    • Hit length
      115,528 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CR759764
      0.02% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:147765610
      AM430841
    • Hit length
      35,328 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 2
      94.44% cov
      AM430841
      0.05% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:33285393
      AL844176
      1 of 2 hits reported for Mus musculus.
    • Hit length
      143,963 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 2
      94.44% cov
      AL844176
      0.01% cov
    • Alignment Length
      17 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
21
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Saccharomyces cerevisiae S288c

    Saccharomyces cerevisiae S288c

    • Public DB hit
      GI:296148198
      NM_001183621
      1 of 3 hits reported for Saccharomyces cerevisiae S288c.
    • Hit length
      663 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_001183621
      3.17% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pTUY1H

    Cloning vector pTUY1H

    • Public DB hit
      GI:313574895
      FR729480
    • Hit length
      6,716 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FR729480
      0.31% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • pGREG expression vector pGREG505-T

    pGREG expression vector pGREG505-T

    • Public DB hit
      GI:311120223
      HM592666
    • Hit length
      9,376 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HM592666
      0.22% cov
    • Alignment Length
      21 bp
  • pGREG expression vector pGREG505-G

    pGREG expression vector pGREG505-G

    • Public DB hit
      GI:311120219
      HM592665
    • Hit length
      9,654 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HM592665
      0.22% cov
    • Alignment Length
      21 bp
  • pGREG expression vector pGREG505-C

    pGREG expression vector pGREG505-C

    • Public DB hit
      GI:311120215
      HM592664
    • Hit length
      9,261 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HM592664
      0.23% cov
    • Alignment Length
      21 bp
  • synthetic Mycoplasma mycoides JCVI-syn1.0

    synthetic Mycoplasma mycoides JCVI-syn1.0

    • Public DB hit
      GI:296455217
      CP002027
    • Hit length
      1,078,809 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP002027
      0% cov
    • Alignment Length
      21 bp
  • Tri-shuttle cloning vector MiniTn-Puro-JCVI-1.7

    Tri-shuttle cloning vector MiniTn-Puro-JCVI-1.7

    • Public DB hit
      GI:291587255
      GU593055
    • Hit length
      13,902 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      GU593055
      0.15% cov
    • Alignment Length
      21 bp
  • Tri-shuttle cloning vector pmycYACTn

    Tri-shuttle cloning vector pmycYACTn

    • Public DB hit
      GI:291587249
      GU593054
    • Hit length
      10,135 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      GU593054
      0.21% cov
    • Alignment Length
      21 bp
  • Saccharomyces cerevisiae EC1118

    Saccharomyces cerevisiae EC1118

    • Public DB hit
      GI:259149327
      FN394216
    • Hit length
      1,110,477 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FN394216
      0% cov
    • Alignment Length
      21 bp
  • Mycoplasma mycoides subsp. capri str. GM12

    Mycoplasma mycoides subsp. capri str. GM12

    • Public DB hit
      GI:256383638
      CP001668
    • Hit length
      1,084,586 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001668
      0% cov
    • Alignment Length
      21 bp
  • Shuttle vector pRS433TEF

    Shuttle vector pRS433TEF

    • Public DB hit
      GI:172087957
      AB304852
    • Hit length
      6,648 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB304852
      0.32% cov
    • Alignment Length
      21 bp
  • Shuttle vector pRS433PGK

    Shuttle vector pRS433PGK

    • Public DB hit
      GI:172087955
      AB304851
    • Hit length
      6,958 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB304851
      0.3% cov
    • Alignment Length
      21 bp
  • Shuttle vector pRS433GAP

    Shuttle vector pRS433GAP

    • Public DB hit
      GI:172087953
      AB304850
    • Hit length
      6,926 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB304850
      0.3% cov
    • Alignment Length
      21 bp
  • Shuttle vector pRS433ADH

    Shuttle vector pRS433ADH

    • Public DB hit
      GI:172087951
      AB304849
    • Hit length
      6,858 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB304849
      0.31% cov
    • Alignment Length
      21 bp
  • Cloning vector pEZY202

    Cloning vector pEZY202

    • Public DB hit
      GI:158348091
      EU181459
    • Hit length
      12,414 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EU181459
      0.17% cov
    • Alignment Length
      21 bp
  • Integration vector pIS374

    Integration vector pIS374

    • Public DB hit
      GI:140047408
      EF173311
    • Hit length
      4,505 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF173311
      0.47% cov
    • Alignment Length
      21 bp
  • Cloning vector pTARBAC6

    Cloning vector pTARBAC6

    • Public DB hit
      GI:118200044
      EF081457
    • Hit length
      13,407 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF081457
      0.16% cov
    • Alignment Length
      21 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:116616045
      EF058763
      1 of 2 hits reported for synthetic construct.
    • Hit length
      663 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF058763
      3.17% cov
    • Alignment Length
      21 bp
  • HIS3/URA3 reporter vector pH3U3

    HIS3/URA3 reporter vector pH3U3

    • Public DB hit
      GI:94963135
      DQ515893
    • Hit length
      5,834 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      DQ515893
      0.36% cov
    • Alignment Length
      21 bp
  • Saccharomyces cerevisiae expression vector p423GALL

    Saccharomyces cerevisiae expression vector p423GALL

    • Public DB hit
      GI:78214570
      DQ019862
    • Hit length
      6,483 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      DQ019862
      0.32% cov
    • Alignment Length
      21 bp
  • Cloning vector pTARBAC2.1

    Cloning vector pTARBAC2.1

    • Public DB hit
      GI:39754100
      AY487253
    • Hit length
      13,397 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AY487253
      0.16% cov
    • Alignment Length
      21 bp
  • Cloning vector pTARBAC1.3

    Cloning vector pTARBAC1.3

    • Public DB hit
      GI:39754096
      AY487252
    • Hit length
      13,462 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AY487252
      0.16% cov
    • Alignment Length
      21 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
20
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Saccharomyces cerevisiae S288c

    Saccharomyces cerevisiae S288c

    • Public DB hit
      GI:296148198
      NM_001183621
      1 of 3 hits reported for Saccharomyces cerevisiae S288c.
    • Hit length
      663 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_001183621
      3.02% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pTUY1H

    Cloning vector pTUY1H

    • Public DB hit
      GI:313574895
      FR729480
    • Hit length
      6,716 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      FR729480
      0.3% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • pGREG expression vector pGREG505-T

    pGREG expression vector pGREG505-T

    • Public DB hit
      GI:311120223
      HM592666
    • Hit length
      9,376 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      HM592666
      0.21% cov
    • Alignment Length
      20 bp
  • pGREG expression vector pGREG505-G

    pGREG expression vector pGREG505-G

    • Public DB hit
      GI:311120219
      HM592665
    • Hit length
      9,654 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      HM592665
      0.21% cov
    • Alignment Length
      20 bp
  • pGREG expression vector pGREG505-C

    pGREG expression vector pGREG505-C

    • Public DB hit
      GI:311120215
      HM592664
    • Hit length
      9,261 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      HM592664
      0.22% cov
    • Alignment Length
      20 bp
  • synthetic Mycoplasma mycoides JCVI-syn1.0

    synthetic Mycoplasma mycoides JCVI-syn1.0

    • Public DB hit
      GI:296455217
      CP002027
    • Hit length
      1,078,809 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CP002027
      0% cov
    • Alignment Length
      20 bp
  • Tri-shuttle cloning vector MiniTn-Puro-JCVI-1.7

    Tri-shuttle cloning vector MiniTn-Puro-JCVI-1.7

    • Public DB hit
      GI:291587255
      GU593055
    • Hit length
      13,902 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      GU593055
      0.14% cov
    • Alignment Length
      20 bp
  • Tri-shuttle cloning vector pmycYACTn

    Tri-shuttle cloning vector pmycYACTn

    • Public DB hit
      GI:291587249
      GU593054
    • Hit length
      10,135 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      GU593054
      0.2% cov
    • Alignment Length
      20 bp
  • Saccharomyces cerevisiae EC1118

    Saccharomyces cerevisiae EC1118

    • Public DB hit
      GI:259149327
      FN394216
    • Hit length
      1,110,477 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      FN394216
      0% cov
    • Alignment Length
      20 bp
  • Mycoplasma mycoides subsp. capri str. GM12

    Mycoplasma mycoides subsp. capri str. GM12

    • Public DB hit
      GI:256383638
      CP001668
    • Hit length
      1,084,586 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CP001668
      0% cov
    • Alignment Length
      20 bp
  • Shuttle vector pRS433TEF

    Shuttle vector pRS433TEF

    • Public DB hit
      GI:172087957
      AB304852
    • Hit length
      6,648 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AB304852
      0.3% cov
    • Alignment Length
      20 bp
  • Shuttle vector pRS433PGK

    Shuttle vector pRS433PGK

    • Public DB hit
      GI:172087955
      AB304851
    • Hit length
      6,958 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AB304851
      0.29% cov
    • Alignment Length
      20 bp
  • Shuttle vector pRS433GAP

    Shuttle vector pRS433GAP

    • Public DB hit
      GI:172087953
      AB304850
    • Hit length
      6,926 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AB304850
      0.29% cov
    • Alignment Length
      20 bp
  • Shuttle vector pRS433ADH

    Shuttle vector pRS433ADH

    • Public DB hit
      GI:172087951
      AB304849
    • Hit length
      6,858 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AB304849
      0.29% cov
    • Alignment Length
      20 bp
  • Cloning vector pEZY202

    Cloning vector pEZY202

    • Public DB hit
      GI:158348091
      EU181459
    • Hit length
      12,414 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU181459
      0.16% cov
    • Alignment Length
      20 bp
  • Cloning vector pTARBAC6

    Cloning vector pTARBAC6

    • Public DB hit
      GI:118200044
      EF081457
    • Hit length
      13,407 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EF081457
      0.15% cov
    • Alignment Length
      20 bp
  • YAC construction vector pRML1

    YAC construction vector pRML1

    • Public DB hit
      GI:117581996
      EF036510
    • Hit length
      9,742 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EF036510
      0.21% cov
    • Alignment Length
      20 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:116616045
      EF058763
      1 of 2 hits reported for synthetic construct.
    • Hit length
      663 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EF058763
      3.02% cov
    • Alignment Length
      20 bp
  • HIS3/URA3 reporter vector pH3U3

    HIS3/URA3 reporter vector pH3U3

    • Public DB hit
      GI:94963135
      DQ515893
    • Hit length
      5,834 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ515893
      0.34% cov
    • Alignment Length
      20 bp
  • Saccharomyces cerevisiae expression vector p423GALL

    Saccharomyces cerevisiae expression vector p423GALL

    • Public DB hit
      GI:78214570
      DQ019862
    • Hit length
      6,483 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ019862
      0.31% cov
    • Alignment Length
      20 bp
  • Cloning vector pTARBAC2.1

    Cloning vector pTARBAC2.1

    • Public DB hit
      GI:39754100
      AY487253
    • Hit length
      13,397 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY487253
      0.15% cov
    • Alignment Length
      20 bp
  • Cloning vector pTARBAC1.3

    Cloning vector pTARBAC1.3

    • Public DB hit
      GI:39754096
      AY487252
    • Hit length
      13,462 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY487252
      0.15% cov
    • Alignment Length
      20 bp
Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
19
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Cloning vector pMV261kan::GFP-mycoSsrA(ALAA)

    Cloning vector pMV261kan::GFP-mycoSsrA(ALAA)

    • Public DB hit
      GI:302749842
      GU459081
    • Hit length
      5,328 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU459081
      0.36% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pMV261kan::GFP

    Cloning vector pMV261kan::GFP

    • Public DB hit
      GI:302749831
      GU459078
    • Hit length
      5,292 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU459078
      0.36% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pMV261kan::GFP-ID

    Cloning vector pMV261kan::GFP-ID

    • Public DB hit
      GI:302749828
      GU459077
    • Hit length
      5,388 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU459077
      0.35% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pMV261kan::GFP-mycoSsrA(GLAA)

    Cloning vector pMV261kan::GFP-mycoSsrA(GLAA)

    • Public DB hit
      GI:302749825
      GU459076
    • Hit length
      5,334 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU459076
      0.36% cov
    • Alignment Length
      19 bp
  • Cloning vector pMV261hyg::GFP-ID

    Cloning vector pMV261hyg::GFP-ID

    • Public DB hit
      GI:302749817
      GU459074
    • Hit length
      5,464 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      GU459074
      0.35% cov
    • Alignment Length
      19 bp
  • Cloning vector pBAV1KT5gfp

    Cloning vector pBAV1KT5gfp

    • Public DB hit
      GI:308513577
      HQ191434
    • Hit length
      3,653 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      HQ191434
      0.52% cov
    • Alignment Length
      19 bp
  • Cloning vector pHC62

    Cloning vector pHC62

    • Public DB hit
      GI:238556184
      FJ389171
    • Hit length
      8,898 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FJ389171
      0.21% cov
    • Alignment Length
      19 bp
  • Cloning vector pHC55

    Cloning vector pHC55

    • Public DB hit
      GI:238556180
      FJ389170
    • Hit length
      8,967 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FJ389170
      0.21% cov
    • Alignment Length
      19 bp
  • Cloning vector pHC51

    Cloning vector pHC51

    • Public DB hit
      GI:238556176
      FJ389169
    • Hit length
      10,586 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FJ389169
      0.18% cov
    • Alignment Length
      19 bp
  • Cloning vector pHC47

    Cloning vector pHC47

    • Public DB hit
      GI:238556172
      FJ389168
    • Hit length
      10,467 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FJ389168
      0.18% cov
    • Alignment Length
      19 bp
  • Cloning vector pHC46

    Cloning vector pHC46

    • Public DB hit
      GI:238556168
      FJ389167
    • Hit length
      9,129 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FJ389167
      0.21% cov
    • Alignment Length
      19 bp
  • Cloning vector pHC44

    Cloning vector pHC44

    • Public DB hit
      GI:238556164
      FJ389166
    • Hit length
      9,816 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FJ389166
      0.19% cov
    • Alignment Length
      19 bp
  • Promoter-probe vector pHC42

    Promoter-probe vector pHC42

    • Public DB hit
      GI:195984534
      EU679506
    • Hit length
      8,855 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EU679506
      0.21% cov
    • Alignment Length
      19 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:239582693
      AB434473
      1 of 5 hits reported for synthetic construct.
    • Hit length
      4,109 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AB434473
      0.46% cov
    • Alignment Length
      19 bp
  • Cloning vector pAc1

    Cloning vector pAc1

    • Public DB hit
      GI:168810898
      EU446025
    • Hit length
      5,368 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EU446025
      0.35% cov
    • Alignment Length
      19 bp
  • Cloning vector pGFPm-T

    Cloning vector pGFPm-T

    • Public DB hit
      GI:164470307
      EU341596
    • Hit length
      3,419 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EU341596
      0.56% cov
    • Alignment Length
      19 bp
  • Cloning vector pGT3

    Cloning vector pGT3

    • Public DB hit
      GI:157841128
      EU182593
    • Hit length
      2,931 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EU182593
      0.65% cov
    • Alignment Length
      19 bp
  • Cloning vector pGT2

    Cloning vector pGT2

    • Public DB hit
      GI:115336276
      EF025088
    • Hit length
      3,267 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EF025088
      0.58% cov
    • Alignment Length
      19 bp
  • rpL23-fusion expression vector pGFP

    rpL23-fusion expression vector pGFP

    • Public DB hit
      GI:46561783
      AY584599
    • Hit length
      4,658 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY584599
      0.41% cov
    • Alignment Length
      19 bp
  • Cloning vector pCA24N

    Cloning vector pCA24N

    • Public DB hit
      GI:63147361
      AB052891
    • Hit length
      5,240 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AB052891
      0.36% cov
    • Alignment Length
      19 bp
  • Cloning vector pRU1064

    Cloning vector pRU1064

    • Public DB hit
      GI:55724882
      AJ851288
    • Hit length
      13,103 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AJ851288
      0.15% cov
    • Alignment Length
      19 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
19
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
19
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:189571644
      NG_007992
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      10,454 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NG_007992
      0.18% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:334347335
      XM_001362951
      1 of 8 hits reported for Monodelphis domestica.
    • Hit length
      1,128 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_001362951
      1.68% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332864033
      XR_023975
      1 of 10 hits reported for Pan troglodytes.
    • Hit length
      3,228 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XR_023975
      0.59% cov
    • Alignment Length
      19 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332257764
      XM_003277926
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,708 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003277926
      1.11% cov
    • Alignment Length
      19 bp
  • Meleagris gallopavo

    Meleagris gallopavo

    • Public DB hit
      GI:326928957
      XM_003210591
    • Hit length
      1,748 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003210591
      1.09% cov
    • Alignment Length
      19 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301792410
      XM_002931126
    • Hit length
      2,633 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002931126
      0.72% cov
    • Alignment Length
      19 bp
Occurrence
14 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
385
Type
peptide
Locations
Detailed Description, Drawings

Declared organism:
Bos taurus

Determined organism:
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:118150804
      NP_001071313
      1 of 2 hits reported for Bos taurus.
    • Hit length
      385 aa
    • E Value
      0E0
    • BLAST Score
      810.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001071313
      100% cov
    • Alignment Length
      385 aa
    • CIGAR string
      385M mismatches: 0 - insertions: 0 - deletions: 0
  • Ovis aries

    Ovis aries

    • Public DB hit
      GI:199945618
      ACH92049
      1 of 2 hits reported for Ovis aries.
    • Hit length
      372 aa
    • E Value
      0E0
    • BLAST Score
      646 bits
    • Similarity
      89.3%
    • Coverage
      97.14%
    • Alignment (schematic)

      SEQ ID NO 8
      97.14% cov
      ACH92049
      99.73% cov
    • Alignment Length
      374 aa
    • CIGAR string
      10H3MN3DMNMN12MN5M2N8MNM3NM2NM2N12MN2MN2MNMN6MNMN4MNMN16M2N2MN3M2N9MN3MN2M4NMN10MN30MN4MNM2N15MN13MN14M3N2MN2MN22MN22MN3MN5MN2MNMN12MNM2N3MN2MN24MN27M1H mismatches: 58 - insertions: 0 - deletions: 3
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
372
Type
peptide
Locations
Detailed Description, Drawings

Declared organism:
Ovis aries

Determined organism:
  • Ovis aries

    Ovis aries

    • Public DB hit
      GI:148222343
      NP_001087253
      1 of 2 hits reported for Ovis aries.
    • Hit length
      372 aa
    • E Value
      0E0
    • BLAST Score
      781.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_001087253
      100% cov
    • Alignment Length
      372 aa
    • CIGAR string
      372M mismatches: 0 - insertions: 0 - deletions: 0
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:118150804
      NP_001071313
      1 of 2 hits reported for Bos taurus.
    • Hit length
      385 aa
    • E Value
      0E0
    • BLAST Score
      644.4 bits
    • Similarity
      89.04%
    • Coverage
      99.73%
    • Alignment (schematic)

      SEQ ID NO 9
      99.73% cov
      NP_001071313
      97.14% cov
    • Alignment Length
      374 aa
    • CIGAR string
      3MN3IMNMN12MN5M2N8MNM3NM2NM2N12MN2MN2MNMN6MNMN4MNMN16M2N2MN3M2N9MN3MN2M4NMN10MN30MN4MNM2N15MN13MN14M3N2MN2MN22MN22MN3MN5MN2MNMN12MNM2N2M2N2MN24MN27M1H mismatches: 59 - insertions: 3 - deletions: 0
Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
418
Type
peptide
Locations
Detailed Description, Drawings

Declared organism:
Sus scrofa

Determined organism:
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:147905488
      NP_001090915
    • Hit length
      418 aa
    • E Value
      0E0
    • BLAST Score
      867.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_001090915
      100% cov
    • Alignment Length
      418 aa
    • CIGAR string
      418M mismatches: 0 - insertions: 0 - deletions: 0
  • Pecari tajacu

    Pecari tajacu

    • Public DB hit
      GI:197359101
      ACH69765
    • Hit length
      398 aa
    • E Value
      1.25E-171
    • BLAST Score
      608.2 bits
    • Similarity
      81.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ACH69765
      100% cov
    • Alignment Length
      418 aa
    • CIGAR string
      7M12D2N3MN4MNM3DNMNM2NMN18MN2MNM4NDNMN5MNMNMN11MNMN5MN2MN10MN3M2N15MN9MNM2N6MN11MN6MN3MNM2NMNMN12MN4DN4MN10MN5MN2MN4MN7MN3MNMNMN5MN16MN2MN2M2N3M2N9M2N2MN7M2N6MN9M3N5M2NM4N7MN3MN12MN4MN2MN10M2N2M4NMN7MNMN2MN3MN7M mismatches: 88 - insertions: 0 - deletions: 20
Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder

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