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Data obtained from: USPTO PSIPS
1,962 sequences found in this patent (in total)

Displaying 1 - 10 of 1,962 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,652
Type
DNA
Locations
Undetermined

Declared organism:
Zea mays

Determined organism:
  • Zea mays

    Zea mays

    • Public DB hit
      GI:293331048
      NM_001176597
      1 of 2 hits reported for Zea mays.
    • Hit length
      1,678 bp
    • E Value
      0E0
    • BLAST Score
      2,191.2 bits
    • Similarity
      99.75%
    • Coverage
      72.28%
    • Alignment (schematic)

      SEQ ID NO 1
      72.28% cov
      NM_001176597
      71.33% cov
    • Alignment Length
      1,197 bp
    • CIGAR string
      429H676MIM2I517M29H mismatches: 0 - insertions: 3 - deletions: 0
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242059420
      XM_002458811
    • Hit length
      1,507 bp
    • E Value
      0E0
    • BLAST Score
      1,762.8 bits
    • Similarity
      89.13%
    • Coverage
      87.17%
    • Alignment (schematic)

      SEQ ID NO 1
      87.17% cov
      XM_002458811
      93.63% cov
    • Alignment Length
      1,444 bp
    • CIGAR string
      134H5MN11M3D2M3D15MD2M2D8MDMI13MN47MN17MN74MN9M2N15MN15MN34MN14MN6MN11MN37MN11MN2MN27MN8MN3MN4MN13MDMD3M4D9MN13MN44MN40MN22M2N15MN2MN5MN10MN3D3MN18MNMN8M2N7MN10MN12MN5MN2MN23MN5MI3MD2MN5M2NMN2MN40MN24MN5MN26MN2MN14MN2MN2MN2MN5MN8MN9MN2MN11MN10MN5MN2MN23MN29MN9MN4MN5MN14MN5MN8MN14MNMN6MN8M2DM4D12MN16MN5MN2MN2M2N7MN5MN5MNM2N6M2N10MDMNI5MN3M2N6MN11MN20MN17MN5MN11MN11MN15MN3MN6MN7MN3D13MN8MN4MN3MN4MN2MN5MN5M2N10MN12MIMD6MN4MN6MNMN10MNMD3MN5MD6MN7MN8M78H mismatches: 120 - insertions: 4 - deletions: 33
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115441400
      NM_001051515
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,760 bp
    • E Value
      0E0
    • BLAST Score
      1,382.4 bits
    • Similarity
      85.15%
    • Coverage
      83.05%
    • Alignment (schematic)

      SEQ ID NO 1
      83.05% cov
      NM_001051515
      77.27% cov
    • Alignment Length
      1,387 bp
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:326516777
      AK365178
    • Hit length
      1,706 bp
    • E Value
      0E0
    • BLAST Score
      1,255 bits
    • Similarity
      83.73%
    • Coverage
      82.63%
    • Alignment (schematic)

      SEQ ID NO 1
      82.63% cov
      AK365178
      78.78% cov
    • Alignment Length
      1,383 bp
Occurrence
13 times in PatSeqDB
SEQ ID NO
2
Length
1,863
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:7415520
      AB022783
      1 of 6 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,863 bp
    • E Value
      0E0
    • BLAST Score
      3,441.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AB022783
      100% cov
    • Alignment Length
      1,863 bp
    • CIGAR string
      1863M mismatches: 0 - insertions: 0 - deletions: 0
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:326507513
      AK371952
      1 of 3 hits reported for Hordeum vulgare subsp. vulgare.
    • Hit length
      2,297 bp
    • E Value
      0E0
    • BLAST Score
      1,395.3 bits
    • Similarity
      85.86%
    • Coverage
      70.75%
    • Alignment (schematic)

      SEQ ID NO 2
      70.75% cov
      AK371952
      57.51% cov
    • Alignment Length
      1,330 bp
  • Zea mays

    Zea mays

    • Public DB hit
      GI:21211798
      AY108640
      1 of 2 hits reported for Zea mays.
    • Hit length
      1,610 bp
    • E Value
      0E0
    • BLAST Score
      994.6 bits
    • Similarity
      81.22%
    • Coverage
      67.95%
    • Alignment (schematic)

      SEQ ID NO 2
      67.95% cov
      AY108640
      78.82% cov
    • Alignment Length
      1,294 bp
SEQ ID NO
3
Length
1,690
Type
DNA
Locations
Undetermined

Declared organism:
Sorghum bicolor

Determined organism:
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242055334
      XM_002456768
    • Hit length
      1,507 bp
    • E Value
      0E0
    • BLAST Score
      2,743.4 bits
    • Similarity
      99.47%
    • Coverage
      89.41%
    • Alignment (schematic)

      SEQ ID NO 3
      89.41% cov
      XM_002456768
      100% cov
    • Alignment Length
      1,511 bp
    • CIGAR string
      14H118MN175MN81MN317MN651M2D39M2D122M165H mismatches: 4 - insertions: 0 - deletions: 4
  • Zea mays

    Zea mays

    • Public DB hit
      GI:195625527
      EU962476
    • Hit length
      1,711 bp
    • E Value
      0E0
    • BLAST Score
      1,978.9 bits
    • Similarity
      93.47%
    • Coverage
      78.7%
    • Alignment (schematic)

      SEQ ID NO 3
      78.7% cov
      EU962476
      78.32% cov
    • Alignment Length
      1,347 bp
    • CIGAR string
      14H9MDM2D5MN20MD3MIN10MN4M12I9MN3MN45MNMN5M2N70MN38MN32MN11MN36MN28MN15MNMN9MN20MNMN14MN16MDMI17MN18MN4MN2MN6MN2MN28MN38MN8MN30MNMN35M2N9M2I3MI40MN78MN13MN68MN35MN2MN14MN32MN2MN14MN50MN5MN8MN14MN3MNM2D64MN23MN29MN9MN16MN6MNMN29MN5MN3MNMN7MN9MN24MN37MN9M346H mismatches: 64 - insertions: 17 - deletions: 7
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:116011098
      AK241733
    • Hit length
      1,636 bp
    • E Value
      0E0
    • BLAST Score
      1,280.8 bits
    • Similarity
      84.66%
    • Coverage
      76.86%
    • Alignment (schematic)

      SEQ ID NO 3
      76.86% cov
      AK241733
      80.13% cov
    • Alignment Length
      1,330 bp
    • CIGAR string
      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 mismatches: 154 - insertions: 31 - deletions: 19
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:326509540
      AK360478
      1 of 2 hits reported for Hordeum vulgare subsp. vulgare.
    • Hit length
      1,823 bp
    • E Value
      0E0
    • BLAST Score
      1,192.2 bits
    • Similarity
      83.9%
    • Coverage
      74.91%
    • Alignment (schematic)

      SEQ ID NO 3
      74.91% cov
      AK360478
      69.45% cov
    • Alignment Length
      1,286 bp
Occurrence
11 times in PatSeqDB
SEQ ID NO
4
Length
1,609
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115487659
      NM_001072849
      1 of 11 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,797 bp
    • E Value
      0E0
    • BLAST Score
      2,931.8 bits
    • Similarity
      99.63%
    • Coverage
      99.75%
    • Alignment (schematic)

      SEQ ID NO 4
      99.75% cov
      NM_001072849
      89.32% cov
    • Alignment Length
      1,605 bp
    • CIGAR string
      704MN35MN11MN14MN21MN112MN702M4H mismatches: 6 - insertions: 0 - deletions: 0
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:326511038
      AK360658
      1 of 2 hits reported for Hordeum vulgare subsp. vulgare.
    • Hit length
      1,856 bp
    • E Value
      0E0
    • BLAST Score
      1,665 bits
    • Similarity
      88%
    • Coverage
      88.07%
    • Alignment (schematic)

      SEQ ID NO 4
      88.07% cov
      AK360658
      76.35% cov
    • Alignment Length
      1,433 bp
    • CIGAR string
      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 mismatches: 140 - insertions: 16 - deletions: 16
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242084995
      XM_002442878
      1 of 3 hits reported for Sorghum bicolor.
    • Hit length
      1,437 bp
    • E Value
      0E0
    • BLAST Score
      1,657.6 bits
    • Similarity
      88.19%
    • Coverage
      86.89%
    • Alignment (schematic)

      SEQ ID NO 4
      86.89% cov
      XM_002442878
      97.29% cov
    • Alignment Length
      1,414 bp
    • CIGAR string
      86H12M2N19MN29MN2M2NMN2MN2MIMDMN17MN44MN2MN2MN5MN11MN22M2N22MN10MN4MN2MN29MNM2N2MN2MN29MN3MN23MNMIMD43MN30MINMD11MN2MN11MD2MIMNMN2MN4MIMD2MI3MD3MINMD10MN3MN6MN2MN4MN8MN20MN2MN8MN7MN6MN23MN5MN2MN2M3N6MN16MDMI5MN5MN5MN3MN2MN28MNMN8MN3MN2MN8MN4MN4MN7MN20MN63MN11MN3MIMD2MN3MNMN20M2NMN26MN20MN5MN11MN2MN2MN5MN32MN32MN8MN3MIMD6MN8MN12MNMN3MN2MI2MI2M2D14MN6MN2M2N9MN2MN2MN8MN2MN5MN11MN5MN11MN3MN22MN2MN2MN9MN10MIMD16MN42MNIMD6MN5MN4MN2MN3MNMNMN4MNMNMIMD3MN11MNIMND4MN3MNMN8MN8MN2MN11MN5MN8MN12MN13M125H mismatches: 135 - insertions: 16 - deletions: 16
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226506427
      NM_001146958
      1 of 2 hits reported for Zea mays.
    • Hit length
      1,748 bp
    • E Value
      0E0
    • BLAST Score
      1,585.5 bits
    • Similarity
      87.26%
    • Coverage
      86.89%
    • Alignment (schematic)

      SEQ ID NO 4
      86.89% cov
      NM_001146958
      79.98% cov
    • Alignment Length
      1,413 bp
    • CIGAR string
      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 mismatches: 150 - insertions: 15 - deletions: 15
SEQ ID NO
5
Length
1,626
Type
DNA
Locations
Undetermined

Declared organism:
Zea mays

Determined organism:
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226510304
      NM_001148365
      1 of 11 hits reported for Zea mays.
    • Hit length
      1,627 bp
    • E Value
      0E0
    • BLAST Score
      2,845 bits
    • Similarity
      98.28%
    • Coverage
      99.75%
    • Alignment (schematic)

      SEQ ID NO 5
      99.75% cov
      NM_001148365
      99.94% cov
    • Alignment Length
      1,632 bp
    • CIGAR string
      1H48MIM3I2MIM2IMIMI11MN29MN117MN137MN89MN96MN268MN190MN431MN23MI65MN6MN27M4D33MD2MD15MN11M3H mismatches: 12 - insertions: 10 - deletions: 6
  • Phyllostachys edulis

    Phyllostachys edulis

    • Public DB hit
      GI:242383512
      FP092356
    • Hit length
      1,735 bp
    • E Value
      0E0
    • BLAST Score
      1,637.3 bits
    • Similarity
      88.97%
    • Coverage
      82.66%
    • Alignment (schematic)

      SEQ ID NO 5
      82.66% cov
      FP092356
      76.25% cov
    • Alignment Length
      1,351 bp
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115474608
      NM_001067436
      1 of 5 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,752 bp
    • E Value
      0E0
    • BLAST Score
      1,567.1 bits
    • Similarity
      88.07%
    • Coverage
      82.41%
    • Alignment (schematic)

      SEQ ID NO 5
      82.41% cov
      NM_001067436
      75.46% cov
    • Alignment Length
      1,349 bp
  • Triticum aestivum

    Triticum aestivum

    • Public DB hit
      GI:32128921
      BT009370
      1 of 2 hits reported for Triticum aestivum.
    • Hit length
      1,695 bp
    • E Value
      0E0
    • BLAST Score
      1,513.5 bits
    • Similarity
      88.16%
    • Coverage
      79.46%
    • Alignment (schematic)

      SEQ ID NO 5
      79.46% cov
      BT009370
      74.99% cov
    • Alignment Length
      1,301 bp
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:326526206
      AK362076
    • Hit length
      1,708 bp
    • E Value
      0E0
    • BLAST Score
      1,485.8 bits
    • Similarity
      87.77%
    • Coverage
      79.46%
    • Alignment (schematic)

      SEQ ID NO 5
      79.46% cov
      AK362076
      74.41% cov
    • Alignment Length
      1,300 bp
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242078056
      XM_002443752
    • Hit length
      1,988 bp
    • E Value
      0E0
    • BLAST Score
      1,323.3 bits
    • Similarity
      85.46%
    • Coverage
      80.01%
    • Alignment (schematic)

      SEQ ID NO 5
      80.01% cov
      XM_002443752
      64.29% cov
    • Alignment Length
      1,314 bp
Occurrence
5 times in PatSeqDB
SEQ ID NO
6
Length
1,656
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115488001
      NM_001073020
      1 of 7 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,768 bp
    • E Value
      0E0
    • BLAST Score
      2,640 bits
    • Similarity
      97.43%
    • Coverage
      93.6%
    • Alignment (schematic)

      SEQ ID NO 6
      93.6% cov
      NM_001073020
      87.56% cov
    • Alignment Length
      1,559 bp
    • CIGAR string
      21M2D43MDM2DM3D3M3D190MN168MN94MN79MN93MN11MN19MN96MN15MN46MN17MN26MN23MN32MN8MN17MN164MN18MN211MN18M4IMI9MN68M4I27M106H mismatches: 20 - insertions: 9 - deletions: 11
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:326532523
      AK373994
    • Hit length
      1,645 bp
    • E Value
      0E0
    • BLAST Score
      1,273.5 bits
    • Similarity
      84.65%
    • Coverage
      78.38%
    • Alignment (schematic)

      SEQ ID NO 6
      78.38% cov
      AK373994
      78.54% cov
    • Alignment Length
      1,316 bp
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226495590
      NM_001156046
      1 of 8 hits reported for Zea mays.
    • Hit length
      1,668 bp
    • E Value
      0E0
    • BLAST Score
      1,125.7 bits
    • Similarity
      82.38%
    • Coverage
      81.16%
    • Alignment (schematic)

      SEQ ID NO 6
      81.16% cov
      NM_001156046
      79.14% cov
    • Alignment Length
      1,368 bp
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242085401
      XM_002443081
    • Hit length
      1,708 bp
    • E Value
      0E0
    • BLAST Score
      1,122 bits
    • Similarity
      82.24%
    • Coverage
      81.58%
    • Alignment (schematic)

      SEQ ID NO 6
      81.58% cov
      XM_002443081
      77.69% cov
    • Alignment Length
      1,374 bp
  • Phyllostachys edulis

    Phyllostachys edulis

    • Public DB hit
      GI:242383512
      FP092356
    • Hit length
      1,735 bp
    • E Value
      0E0
    • BLAST Score
      913.4 bits
    • Similarity
      79.87%
    • Coverage
      79.11%
    • Alignment (schematic)

      SEQ ID NO 6
      79.11% cov
      FP092356
      74.47% cov
    • Alignment Length
      1,336 bp
Occurrence
11 times in PatSeqDB
SEQ ID NO
7
Length
1,671
Type
DNA
Locations
Undetermined

Declared organism:
Zea mays

Determined organism:
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226498595
      NM_001158667
      1 of 9 hits reported for Zea mays.
    • Hit length
      1,580 bp
    • E Value
      0E0
    • BLAST Score
      2,837.6 bits
    • Similarity
      100%
    • Coverage
      91.92%
    • Alignment (schematic)

      SEQ ID NO 7
      91.92% cov
      NM_001158667
      97.22% cov
    • Alignment Length
      1,536 bp
    • CIGAR string
      86H1536M49H mismatches: 0 - insertions: 0 - deletions: 0
  • Phyllostachys edulis

    Phyllostachys edulis

    • Public DB hit
      GI:242383512
      FP092356
    • Hit length
      1,735 bp
    • E Value
      0E0
    • BLAST Score
      1,415.7 bits
    • Similarity
      86.74%
    • Coverage
      77.08%
    • Alignment (schematic)

      SEQ ID NO 7
      77.08% cov
      FP092356
      73.89% cov
    • Alignment Length
      1,305 bp
    • CIGAR string
      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 mismatches: 133 - insertions: 17 - deletions: 23
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242078056
      XM_002443752
      1 of 2 hits reported for Sorghum bicolor.
    • Hit length
      1,988 bp
    • E Value
      0E0
    • BLAST Score
      1,328.9 bits
    • Similarity
      85.25%
    • Coverage
      78.7%
    • Alignment (schematic)

      SEQ ID NO 7
      78.7% cov
      XM_002443752
      65.69% cov
    • Alignment Length
      1,336 bp
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115474608
      NM_001067436
      1 of 5 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,752 bp
    • E Value
      0E0
    • BLAST Score
      1,317.8 bits
    • Similarity
      85.42%
    • Coverage
      77.08%
    • Alignment (schematic)

      SEQ ID NO 7
      77.08% cov
      NM_001067436
      73.34% cov
    • Alignment Length
      1,310 bp
  • Triticum aestivum

    Triticum aestivum

    • Public DB hit
      GI:32128921
      BT009370
      1 of 2 hits reported for Triticum aestivum.
    • Hit length
      1,695 bp
    • E Value
      0E0
    • BLAST Score
      1,284.5 bits
    • Similarity
      84.99%
    • Coverage
      76.78%
    • Alignment (schematic)

      SEQ ID NO 7
      76.78% cov
      BT009370
      75.34% cov
    • Alignment Length
      1,299 bp
SEQ ID NO
8
Length
2,071
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115454316
      NM_001057294
      1 of 6 hits reported for Oryza sativa Japonica Group.
    • Hit length
      2,277 bp
    • E Value
      0E0
    • BLAST Score
      3,698.1 bits
    • Similarity
      100%
    • Coverage
      96.67%
    • Alignment (schematic)

      SEQ ID NO 8
      96.67% cov
      NM_001057294
      87.92% cov
    • Alignment Length
      2,002 bp
    • CIGAR string
      2002M69H mismatches: 0 - insertions: 0 - deletions: 0
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:326507513
      AK371952
      1 of 3 hits reported for Hordeum vulgare subsp. vulgare.
    • Hit length
      2,297 bp
    • E Value
      0E0
    • BLAST Score
      1,395.3 bits
    • Similarity
      85.86%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 8
      63.64% cov
      AK371952
      57.51% cov
    • Alignment Length
      1,330 bp
  • Zea mays

    Zea mays

    • Public DB hit
      GI:21211798
      AY108640
      1 of 2 hits reported for Zea mays.
    • Hit length
      1,610 bp
    • E Value
      0E0
    • BLAST Score
      994.6 bits
    • Similarity
      81.22%
    • Coverage
      61.13%
    • Alignment (schematic)

      SEQ ID NO 8
      61.13% cov
      AY108640
      78.82% cov
    • Alignment Length
      1,294 bp
Occurrence
11 times in PatSeqDB
SEQ ID NO
9
Length
1,813
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:156765815
      AK289200
      1 of 4 hits reported for Oryza sativa Japonica Group.
    • Hit length
      2,373 bp
    • E Value
      0E0
    • BLAST Score
      3,264.2 bits
    • Similarity
      99.5%
    • Coverage
      98.84%
    • Alignment (schematic)

      SEQ ID NO 9
      98.84% cov
      AK289200
      75.73% cov
    • Alignment Length
      1,797 bp
    • CIGAR string
      21H3MN32M3IM2I1214MN176MN288MN74M mismatches: 4 - insertions: 5 - deletions: 0
  • Phyllostachys edulis

    Phyllostachys edulis

    • Public DB hit
      GI:242383512
      FP092356
    • Hit length
      1,735 bp
    • E Value
      0E0
    • BLAST Score
      1,818.2 bits
    • Similarity
      91.12%
    • Coverage
      74.24%
    • Alignment (schematic)

      SEQ ID NO 9
      74.24% cov
      FP092356
      77.41% cov
    • Alignment Length
      1,352 bp
  • Triticum aestivum

    Triticum aestivum

    • Public DB hit
      GI:32128801
      BT009250
      1 of 2 hits reported for Triticum aestivum.
    • Hit length
      1,703 bp
    • E Value
      0E0
    • BLAST Score
      1,622.5 bits
    • Similarity
      88.51%
    • Coverage
      74.24%
    • Alignment (schematic)

      SEQ ID NO 9
      74.24% cov
      BT009250
      79.04% cov
    • Alignment Length
      1,358 bp
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226500313
      NM_001157501
      1 of 9 hits reported for Zea mays.
    • Hit length
      1,838 bp
    • E Value
      0E0
    • BLAST Score
      1,565.2 bits
    • Similarity
      87.77%
    • Coverage
      73.97%
    • Alignment (schematic)

      SEQ ID NO 9
      73.97% cov
      NM_001157501
      73.78% cov
    • Alignment Length
      1,366 bp
  • Hordeum vulgare subsp. vulgare

    Hordeum vulgare subsp. vulgare

    • Public DB hit
      GI:326526206
      AK362076
    • Hit length
      1,708 bp
    • E Value
      0E0
    • BLAST Score
      1,539.4 bits
    • Similarity
      87.39%
    • Coverage
      74.41%
    • Alignment (schematic)

      SEQ ID NO 9
      74.41% cov
      AK362076
      78.98% cov
    • Alignment Length
      1,364 bp
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242078056
      XM_002443752
    • Hit length
      1,988 bp
    • E Value
      0E0
    • BLAST Score
      1,504.3 bits
    • Similarity
      87.59%
    • Coverage
      72.15%
    • Alignment (schematic)

      SEQ ID NO 9
      72.15% cov
      XM_002443752
      65.95% cov
    • Alignment Length
      1,330 bp
SEQ ID NO
10
Length
974
Type
DNA
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:145335975
      NM_101997
      1 of 5 hits reported for Arabidopsis thaliana.
    • Hit length
      1,004 bp
    • E Value
      0E0
    • BLAST Score
      1,799.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_101997
      97.01% cov
    • Alignment Length
      974 bp
    • CIGAR string
      974M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297850563
      XM_002893117
    • Hit length
      784 bp
    • E Value
      0E0
    • BLAST Score
      1,258.7 bits
    • Similarity
      95.67%
    • Coverage
      80.6%
    • Alignment (schematic)

      SEQ ID NO 10
      80.6% cov
      XM_002893117
      99.74% cov
    • Alignment Length
      786 bp
Occurrence
11 times in PatSeqDB

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