Patents
US 8623617 B2

Detecting Pax2 For The Diagnosis Of Breast Cancer

Granted Patent
US 8623617 B2
197-195-711-718-455
Data obtained from: USPTO Fulltext NCBI GenBank DDBJ Pat EMBL-EBI Pat
71 sequences found in this patent (in total)

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Download sequences in fasta format: 6 peptides 55 nucleotides 10 RNAs

Displaying 1 - 10 of 71 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
5
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Homo sapiens
Determined organism
Occurrence
209 times in PatSeqDB
Tools
SEQ ID NO
2
Length
5
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Homo sapiens
Determined organism
Occurrence
176 times in PatSeqDB
Tools
SEQ ID NO
3
Length
21
Sequence Type
RNA
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:208879466
      NG_008680
    • Hit length
      91,228 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 3
      90.48% cov
      NG_008680
      0.02% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335302116
      XM_003359332
      1 of 5 hits reported for Sus scrofa.
    • Hit length
      1,257 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 3
      90.48% cov
      XM_003359332
      1.51% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332834862
      XM_003312731
      1 of 5 hits reported for Pan troglodytes.
    • Hit length
      1,326 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 3
      90.48% cov
      XM_003312731
      1.43% cov
    • Alignment Length
      19 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332212063
      XM_003255095
    • Hit length
      1,788 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 3
      90.48% cov
      XM_003255095
      1.06% cov
    • Alignment Length
      19 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301756119
      XM_002913907
    • Hit length
      1,275 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 3
      90.48% cov
      XM_002913907
      1.49% cov
    • Alignment Length
      19 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297490877
      XM_002698435
      1 of 4 hits reported for Bos taurus.
    • Hit length
      1,254 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 3
      90.48% cov
      XM_002698435
      1.52% cov
    • Alignment Length
      19 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297301681
      XM_001108772
      1 of 4 hits reported for Macaca mulatta.
    • Hit length
      1,281 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 3
      90.48% cov
      XM_001108772
      1.48% cov
    • Alignment Length
      19 bp
  • Ovis aries

    Ovis aries

    • Public DB hit
      GI:295844822
      NM_001178052
    • Hit length
      1,253 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 3
      90.48% cov
      NM_001178052
      1.52% cov
    • Alignment Length
      19 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291404659
      XM_002718658
      1 of 3 hits reported for Oryctolagus cuniculus.
    • Hit length
      1,266 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 3
      90.48% cov
      XM_002718658
      1.5% cov
    • Alignment Length
      19 bp
Occurrence
53 times in PatSeqDB
Tools
SEQ ID NO
4
Length
21
Sequence Type
RNA
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335302116
      XM_003359332
      1 of 3 hits reported for Sus scrofa.
    • Hit length
      1,257 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_003359332
      1.67% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:334314357
      XM_003339982
    • Hit length
      1,185 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_003339982
      1.77% cov
    • Alignment Length
      21 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332834860
      XM_003312729
      1 of 3 hits reported for Pan troglodytes.
    • Hit length
      1,230 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_003312729
      1.71% cov
    • Alignment Length
      21 bp
  • Meleagris gallopavo

    Meleagris gallopavo

    • Public DB hit
      GI:326923534
      XM_003207943
    • Hit length
      1,971 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_003207943
      1.07% cov
    • Alignment Length
      21 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297687211
      XM_002821092
    • Hit length
      1,728 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002821092
      1.22% cov
    • Alignment Length
      21 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297490875
      XM_002698434
      1 of 2 hits reported for Bos taurus.
    • Hit length
      1,185 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002698434
      1.77% cov
    • Alignment Length
      21 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297301679
      XM_001108817
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      3,083 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_001108817
      0.68% cov
    • Alignment Length
      21 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296221019
      XM_002756527
    • Hit length
      1,230 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002756527
      1.71% cov
    • Alignment Length
      21 bp
  • Ovis aries

    Ovis aries

    • Public DB hit
      GI:295844822
      NM_001178052
    • Hit length
      1,253 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_001178052
      1.68% cov
    • Alignment Length
      21 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291404657
      XM_002718657
      1 of 2 hits reported for Oryctolagus cuniculus.
    • Hit length
      1,185 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002718657
      1.77% cov
    • Alignment Length
      21 bp
  • Taeniopygia guttata

    Taeniopygia guttata

    • Public DB hit
      GI:224052464
      XM_002197919
      1 of 2 hits reported for Taeniopygia guttata.
    • Hit length
      1,185 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002197919
      1.77% cov
    • Alignment Length
      21 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194205760
      XM_001499985
    • Hit length
      1,401 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_001499985
      1.5% cov
    • Alignment Length
      21 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:152963642
      NM_003989
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      4,035 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_003989
      0.52% cov
    • Alignment Length
      21 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73998648
      XM_846446
    • Hit length
      2,367 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_846446
      0.89% cov
    • Alignment Length
      21 bp
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:45382168
      NM_204793
    • Hit length
      1,983 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_204793
      1.06% cov
    • Alignment Length
      21 bp
Occurrence
53 times in PatSeqDB
Tools
SEQ ID NO
5
Length
21
Sequence Type
RNA
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:208879466
      NG_008680
    • Hit length
      91,228 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 5
      90.48% cov
      NG_008680
      0.02% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335302116
      XM_003359332
      1 of 5 hits reported for Sus scrofa.
    • Hit length
      1,257 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 5
      90.48% cov
      XM_003359332
      1.51% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332834862
      XM_003312731
      1 of 5 hits reported for Pan troglodytes.
    • Hit length
      1,326 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 5
      90.48% cov
      XM_003312731
      1.43% cov
    • Alignment Length
      19 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332212063
      XM_003255095
    • Hit length
      1,788 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 5
      90.48% cov
      XM_003255095
      1.06% cov
    • Alignment Length
      19 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301756119
      XM_002913907
    • Hit length
      1,275 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 5
      90.48% cov
      XM_002913907
      1.49% cov
    • Alignment Length
      19 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297687211
      XM_002821092
    • Hit length
      1,728 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 5
      90.48% cov
      XM_002821092
      1.1% cov
    • Alignment Length
      19 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297490877
      XM_002698435
      1 of 4 hits reported for Bos taurus.
    • Hit length
      1,254 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 5
      90.48% cov
      XM_002698435
      1.52% cov
    • Alignment Length
      19 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297301681
      XM_001108772
      1 of 4 hits reported for Macaca mulatta.
    • Hit length
      1,281 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 5
      90.48% cov
      XM_001108772
      1.48% cov
    • Alignment Length
      19 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296221023
      XM_002756529
      1 of 3 hits reported for Callithrix jacchus.
    • Hit length
      1,281 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 5
      90.48% cov
      XM_002756529
      1.48% cov
    • Alignment Length
      19 bp
Occurrence
53 times in PatSeqDB
Tools
SEQ ID NO
6
Length
21
Sequence Type
RNA
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Meleagris gallopavo

    Meleagris gallopavo

    • Public DB hit
      GI:326923534
      XM_003207943
      1 of 3 hits reported for Meleagris gallopavo.
    • Hit length
      1,971 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XM_003207943
      1.07% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Taeniopygia guttata

    Taeniopygia guttata

    • Public DB hit
      GI:224052464
      XM_002197919
      1 of 4 hits reported for Taeniopygia guttata.
    • Hit length
      1,185 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XM_002197919
      1.77% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:45382168
      NM_204793
      1 of 2 hits reported for Gallus gallus.
    • Hit length
      1,983 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NM_204793
      1.06% cov
    • Alignment Length
      21 bp
  • Columba livia

    Columba livia

    • Public DB hit
      GI:334350734
      HQ426968
      1 of 3 hits reported for Columba livia.
    • Hit length
      1,052 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ426968
      2% cov
    • Alignment Length
      21 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:208879466
      NG_008680
    • Hit length
      91,228 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 6
      90.48% cov
      NG_008680
      0.02% cov
    • Alignment Length
      19 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335302116
      XM_003359332
      1 of 5 hits reported for Sus scrofa.
    • Hit length
      1,257 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 6
      90.48% cov
      XM_003359332
      1.51% cov
    • Alignment Length
      19 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332834862
      XM_003312731
      1 of 5 hits reported for Pan troglodytes.
    • Hit length
      1,326 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 6
      90.48% cov
      XM_003312731
      1.43% cov
    • Alignment Length
      19 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332212063
      XM_003255095
    • Hit length
      1,788 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 6
      90.48% cov
      XM_003255095
      1.06% cov
    • Alignment Length
      19 bp
  • Anolis carolinensis

    Anolis carolinensis

    • Public DB hit
      GI:327276784
      XM_003223100
    • Hit length
      792 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 6
      90.48% cov
      XM_003223100
      2.4% cov
    • Alignment Length
      19 bp
Occurrence
53 times in PatSeqDB
Tools
SEQ ID NO
7
Length
20
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:208879466
      NG_008680
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      91,228 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NG_008680
      0.02% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332834862
      XM_003312731
      1 of 8 hits reported for Pan troglodytes.
    • Hit length
      1,326 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003312731
      1.51% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332212063
      XM_003255095
    • Hit length
      1,788 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003255095
      1.12% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:326537334
      NM_011037
    • Hit length
      3,029 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_011037
      0.66% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297687211
      XM_002821092
    • Hit length
      1,728 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002821092
      1.16% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297301681
      XM_001108772
      1 of 4 hits reported for Macaca mulatta.
    • Hit length
      1,281 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_001108772
      1.56% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296221023
      XM_002756529
      1 of 3 hits reported for Callithrix jacchus.
    • Hit length
      1,281 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002756529
      1.56% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157823604
      NM_001106361
    • Hit length
      1,400 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_001106361
      1.43% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
70 times in PatSeqDB
Tools
SEQ ID NO
8
Length
21
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:326537334
      NM_011037
      1 of 7 hits reported for Mus musculus.
    • Hit length
      3,029 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_011037
      0.69% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332834862
      XM_003312731
      1 of 10 hits reported for Pan troglodytes.
    • Hit length
      1,326 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_003312731
      1.58% cov
    • Alignment Length
      21 bp
    • CIGAR string
      5MN15M mismatches: 1 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157823604
      NM_001106361
    • Hit length
      1,400 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001106361
      1.5% cov
    • Alignment Length
      21 bp
    • CIGAR string
      5MN15M mismatches: 1 - insertions: 0 - deletions: 0
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73998648
      XM_846446
    • Hit length
      2,367 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_846446
      0.89% cov
    • Alignment Length
      21 bp
    • CIGAR string
      5MN15M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
70 times in PatSeqDB
Tools
SEQ ID NO
9
Length
20
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:326537334
      NM_011037
      1 of 8 hits reported for Mus musculus.
    • Hit length
      3,029 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_011037
      0.66% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157823604
      NM_001106361
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      1,400 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_001106361
      1.43% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296221023
      XM_002756529
      1 of 6 hits reported for Callithrix jacchus.
    • Hit length
      1,281 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      95%
    • Alignment (schematic)

      SEQ ID NO 9
      95% cov
      XM_002756529
      1.48% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M1H mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
71 times in PatSeqDB
Tools
SEQ ID NO
10
Length
21
Sequence Type
RNA
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:208879466
      NG_008680
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      91,228 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      NG_008680
      0.02% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335302116
      XM_003359332
      1 of 5 hits reported for Sus scrofa.
    • Hit length
      1,257 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_003359332
      1.51% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332834862
      XM_003312731
      1 of 5 hits reported for Pan troglodytes.
    • Hit length
      1,326 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_003312731
      1.43% cov
    • Alignment Length
      19 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332212063
      XM_003255095
    • Hit length
      1,788 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_003255095
      1.06% cov
    • Alignment Length
      19 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301756119
      XM_002913907
    • Hit length
      1,275 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_002913907
      1.49% cov
    • Alignment Length
      19 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297490877
      XM_002698435
      1 of 4 hits reported for Bos taurus.
    • Hit length
      1,254 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_002698435
      1.52% cov
    • Alignment Length
      19 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297301681
      XM_001108772
      1 of 4 hits reported for Macaca mulatta.
    • Hit length
      1,281 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_001108772
      1.48% cov
    • Alignment Length
      19 bp
  • Ovis aries

    Ovis aries

    • Public DB hit
      GI:295844822
      NM_001178052
    • Hit length
      1,253 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      NM_001178052
      1.52% cov
    • Alignment Length
      19 bp
Occurrence
51 times in PatSeqDB
Tools

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