Patents
US 8075888 B2

Methods Of Treatment Using Antibodies To Il-17 Homologous Polypeptides

Granted Patent
US 8075888 B2
195-307-544-708-612
Data obtained from: DDBJ Pat USPTO Fulltext EMBL-EBI Pat NCBI GenBank
26 sequences found in this patent (in total)

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Download sequences in fasta format: 14 peptides 12 nucleotides

Displaying 1 - 10 of 26 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
180
Sequence Type
peptide
Locations
Detailed Description, Drawings, Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:7657228
      NP_055258
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      180 aa
    • E Value
      1.69E-100
    • BLAST Score
      369.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_055258
      100% cov
    • Alignment Length
      180 aa
    • CIGAR string
      180M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234955
      XP_003266671
    • Hit length
      180 aa
    • E Value
      5.97E-100
    • BLAST Score
      367.5 bits
    • Similarity
      99.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_003266671
      100% cov
    • Alignment Length
      180 aa
    • CIGAR string
      166MN13M mismatches: 1 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114602737
      XP_001163413
    • Hit length
      180 aa
    • E Value
      1.64E-99
    • BLAST Score
      365.9 bits
    • Similarity
      99.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_001163413
      100% cov
    • Alignment Length
      180 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297676375
      XP_002816112
    • Hit length
      180 aa
    • E Value
      4.65E-99
    • BLAST Score
      364.4 bits
    • Similarity
      98.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_002816112
      100% cov
    • Alignment Length
      180 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149726190
      XP_001503824
    • Hit length
      180 aa
    • E Value
      1.36E-92
    • BLAST Score
      343.2 bits
    • Similarity
      96.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_001503824
      100% cov
    • Alignment Length
      180 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:57085757
      XP_546311
    • Hit length
      180 aa
    • E Value
      1.59E-92
    • BLAST Score
      342.8 bits
    • Similarity
      95.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_546311
      100% cov
    • Alignment Length
      180 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301765570
      XP_002918199
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      180 aa
    • E Value
      2.24E-90
    • BLAST Score
      335.5 bits
    • Similarity
      95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_002918199
      100% cov
    • Alignment Length
      180 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109079294
      XP_001106071
    • Hit length
      180 aa
    • E Value
      1.27E-89
    • BLAST Score
      333.2 bits
    • Similarity
      98.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_001106071
      100% cov
    • Alignment Length
      180 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:281371353
      NP_446241
    • Hit length
      180 aa
    • E Value
      1.22E-88
    • BLAST Score
      329.7 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_446241
      100% cov
    • Alignment Length
      180 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:9507247
      NP_062381
      1 of 2 hits reported for Mus musculus.
    • Hit length
      180 aa
    • E Value
      2.69E-88
    • BLAST Score
      328.6 bits
    • Similarity
      92.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_062381
      100% cov
    • Alignment Length
      180 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311250469
      XP_003124134
    • Hit length
      180 aa
    • E Value
      9.64E-87
    • BLAST Score
      323.6 bits
    • Similarity
      95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_003124134
      100% cov
    • Alignment Length
      180 aa
Occurrence
1133 times in PatSeqDB
Tools
SEQ ID NO
2
Length
687
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:37182979
      AY358931
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      687 bp
    • E Value
      0E0
    • BLAST Score
      1,269.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY358931
      100% cov
    • Alignment Length
      687 bp
    • CIGAR string
      687M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114602736
      XM_001163413
    • Hit length
      714 bp
    • E Value
      0E0
    • BLAST Score
      1,247.6 bits
    • Similarity
      99.42%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_001163413
      96.22% cov
    • Alignment Length
      687 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297676374
      XM_002816066
    • Hit length
      714 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      98.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_002816066
      96.22% cov
    • Alignment Length
      687 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234954
      XM_003266623
    • Hit length
      713 bp
    • E Value
      0E0
    • BLAST Score
      1,195.9 bits
    • Similarity
      98.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_003266623
      96.21% cov
    • Alignment Length
      687 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297295430
      XM_001106071
    • Hit length
      698 bp
    • E Value
      0E0
    • BLAST Score
      1,129.4 bits
    • Similarity
      96.36%
    • Coverage
      99.85%
    • Alignment (schematic)

      SEQ ID NO 2
      99.85% cov
      XM_001106071
      98.28% cov
    • Alignment Length
      686 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:307685846
      AB590699
    • Hit length
      557 bp
    • E Value
      0E0
    • BLAST Score
      998.3 bits
    • Similarity
      100%
    • Coverage
      78.6%
    • Alignment (schematic)

      SEQ ID NO 2
      78.6% cov
      AB590699
      96.95% cov
    • Alignment Length
      540 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296193204
      XM_002744355
    • Hit length
      543 bp
    • E Value
      0E0
    • BLAST Score
      865.4 bits
    • Similarity
      95.4%
    • Coverage
      79.04%
    • Alignment (schematic)

      SEQ ID NO 2
      79.04% cov
      XM_002744355
      100% cov
    • Alignment Length
      543 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149726189
      XM_001503774
    • Hit length
      575 bp
    • E Value
      0E0
    • BLAST Score
      734.2 bits
    • Similarity
      89.77%
    • Coverage
      83.7%
    • Alignment (schematic)

      SEQ ID NO 2
      83.7% cov
      XM_001503774
      99.83% cov
    • Alignment Length
      577 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311250468
      XM_003124086
    • Hit length
      781 bp
    • E Value
      0E0
    • BLAST Score
      723.2 bits
    • Similarity
      90.58%
    • Coverage
      79.62%
    • Alignment (schematic)

      SEQ ID NO 2
      79.62% cov
      XM_003124086
      70.04% cov
    • Alignment Length
      552 bp
Occurrence
947 times in PatSeqDB
Tools
SEQ ID NO
3
Length
197
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:7019435
      NP_037410
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      197 aa
    • E Value
      9.51E-109
    • BLAST Score
      397.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NP_037410
      100% cov
    • Alignment Length
      197 aa
    • CIGAR string
      197M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114664105
      XP_523458
    • Hit length
      197 aa
    • E Value
      5.09E-108
    • BLAST Score
      394.8 bits
    • Similarity
      99.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XP_523458
      100% cov
    • Alignment Length
      197 aa
    • CIGAR string
      45MN151M mismatches: 1 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265753
      XP_003281880
    • Hit length
      197 aa
    • E Value
      2.38E-106
    • BLAST Score
      389 bits
    • Similarity
      97.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XP_003281880
      100% cov
    • Alignment Length
      197 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297699428
      XP_002826788
    • Hit length
      197 aa
    • E Value
      5.44E-106
    • BLAST Score
      387.9 bits
    • Similarity
      97.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XP_002826788
      100% cov
    • Alignment Length
      197 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297284651
      XP_001099282
    • Hit length
      414 aa
    • E Value
      2.02E-101
    • BLAST Score
      372.9 bits
    • Similarity
      95.38%
    • Coverage
      98.98%
    • Alignment (schematic)

      SEQ ID NO 3
      98.98% cov
      XP_001099282
      47.1% cov
    • Alignment Length
      195 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296231778
      XP_002761306
    • Hit length
      319 aa
    • E Value
      3.82E-92
    • BLAST Score
      342 bits
    • Similarity
      91.28%
    • Coverage
      98.98%
    • Alignment (schematic)

      SEQ ID NO 3
      98.98% cov
      XP_002761306
      61.13% cov
    • Alignment Length
      195 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73956937
      XP_851256
    • Hit length
      200 aa
    • E Value
      1.42E-75
    • BLAST Score
      287 bits
    • Similarity
      83.43%
    • Coverage
      91.88%
    • Alignment (schematic)

      SEQ ID NO 3
      91.88% cov
      XP_851256
      90.5% cov
    • Alignment Length
      181 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:119909898
      XP_874908
      1 of 2 hits reported for Bos taurus.
    • Hit length
      410 aa
    • E Value
      1.66E-74
    • BLAST Score
      283.5 bits
    • Similarity
      81.52%
    • Coverage
      91.37%
    • Alignment (schematic)

      SEQ ID NO 3
      91.37% cov
      XP_874908
      44.88% cov
    • Alignment Length
      184 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149701795
      XP_001488037
    • Hit length
      253 aa
    • E Value
      7.6E-73
    • BLAST Score
      277.7 bits
    • Similarity
      81.56%
    • Coverage
      90.86%
    • Alignment (schematic)

      SEQ ID NO 3
      90.86% cov
      XP_001488037
      70.75% cov
    • Alignment Length
      179 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:164420675
      NP_665833
      1 of 3 hits reported for Mus musculus.
    • Hit length
      194 aa
    • E Value
      3.09E-71
    • BLAST Score
      272.3 bits
    • Similarity
      84.29%
    • Coverage
      96.95%
    • Alignment (schematic)

      SEQ ID NO 3
      96.95% cov
      NP_665833
      98.45% cov
    • Alignment Length
      191 aa
Occurrence
1041 times in PatSeqDB
Tools
SEQ ID NO
4
Length
1,047
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:37182064
      AY358471
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      1,047 bp
    • E Value
      0E0
    • BLAST Score
      1,934.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY358471
      100% cov
    • Alignment Length
      1,047 bp
    • CIGAR string
      1047M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332846638
      XM_523458
    • Hit length
      1,039 bp
    • E Value
      0E0
    • BLAST Score
      1,868.1 bits
    • Similarity
      99.13%
    • Coverage
      99.14%
    • Alignment (schematic)

      SEQ ID NO 4
      99.14% cov
      XM_523458
      100% cov
    • Alignment Length
      1,039 bp
    • CIGAR string
      6H57MN122MN8MN77MN53MN131MN401MN83MI3MN95M3H mismatches: 8 - insertions: 1 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265752
      XM_003281832
    • Hit length
      1,037 bp
    • E Value
      0E0
    • BLAST Score
      1,683.4 bits
    • Similarity
      95.96%
    • Coverage
      99.14%
    • Alignment (schematic)

      SEQ ID NO 4
      99.14% cov
      XM_003281832
      100% cov
    • Alignment Length
      1,039 bp
    • CIGAR string
      6H37MN19MN14MN11M2N88MN87MN8MN7MN16MN12MN11MN56MN8MN14MN47MN2MN44MN44MN14MN2MN8MN26MN2MN37MN13MN9MN7M2D12MN108MN61M2N35MI6MN18MN24MN3MN2MN54MN19M2N12M3H mismatches: 39 - insertions: 1 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297699427
      XM_002826742
    • Hit length
      1,000 bp
    • E Value
      0E0
    • BLAST Score
      1,570.8 bits
    • Similarity
      95.01%
    • Coverage
      95.51%
    • Alignment (schematic)

      SEQ ID NO 4
      95.51% cov
      XM_002826742
      100% cov
    • Alignment Length
      1,002 bp
    • CIGAR string
      44H19MN27MN60MN24MN2MN11MN32MN42MN8MN7MN83MN14MN8MN2MN14MN41MN2MN2MN5MN17MN80MN2MN8MN26MN2MN46MN4MN17M2N51MN7MD33MN20MN6MN6MN34MN5MNMNMI10M2N36MN4MN8MN9MN20MI4MD6MN5MN47MN34M3H mismatches: 46 - insertions: 2 - deletions: 2
Occurrence
826 times in PatSeqDB
Tools
SEQ ID NO
5
Length
830
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:27477077
      NM_014443
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      711 bp
    • E Value
      0E0
    • BLAST Score
      1,255 bits
    • Similarity
      99%
    • Coverage
      84.34%
    • Alignment (schematic)

      SEQ ID NO 5
      84.34% cov
      NM_014443
      98.45% cov
    • Alignment Length
      702 bp
    • CIGAR string
      130H7MI157MN91MN19MN119MI27MD171MD104M mismatches: 3 - insertions: 2 - deletions: 2
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114602736
      XM_001163413
    • Hit length
      714 bp
    • E Value
      0E0
    • BLAST Score
      1,225.4 bits
    • Similarity
      98.42%
    • Coverage
      83.86%
    • Alignment (schematic)

      SEQ ID NO 5
      83.86% cov
      XM_001163413
      97.48% cov
    • Alignment Length
      698 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297676374
      XM_002816066
    • Hit length
      714 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      97.28%
    • Coverage
      83.86%
    • Alignment (schematic)

      SEQ ID NO 5
      83.86% cov
      XM_002816066
      97.48% cov
    • Alignment Length
      698 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234954
      XM_003266623
    • Hit length
      713 bp
    • E Value
      0E0
    • BLAST Score
      1,173.7 bits
    • Similarity
      97.13%
    • Coverage
      83.86%
    • Alignment (schematic)

      SEQ ID NO 5
      83.86% cov
      XM_003266623
      97.48% cov
    • Alignment Length
      698 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297295430
      XM_001106071
    • Hit length
      698 bp
    • E Value
      0E0
    • BLAST Score
      1,103.6 bits
    • Similarity
      95.27%
    • Coverage
      83.86%
    • Alignment (schematic)

      SEQ ID NO 5
      83.86% cov
      XM_001106071
      99.71% cov
    • Alignment Length
      698 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:307685846
      AB590699
    • Hit length
      557 bp
    • E Value
      0E0
    • BLAST Score
      970.6 bits
    • Similarity
      99.08%
    • Coverage
      65.06%
    • Alignment (schematic)

      SEQ ID NO 5
      65.06% cov
      AB590699
      96.95% cov
    • Alignment Length
      541 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296193204
      XM_002744355
    • Hit length
      543 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      94.49%
    • Coverage
      65.42%
    • Alignment (schematic)

      SEQ ID NO 5
      65.42% cov
      XM_002744355
      100% cov
    • Alignment Length
      544 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:300796479
      NM_001192045
      1 of 2 hits reported for Bos taurus.
    • Hit length
      658 bp
    • E Value
      0E0
    • BLAST Score
      706.5 bits
    • Similarity
      88.33%
    • Coverage
      71.33%
    • Alignment (schematic)

      SEQ ID NO 5
      71.33% cov
      NM_001192045
      89.97% cov
    • Alignment Length
      600 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149726189
      XM_001503774
    • Hit length
      575 bp
    • E Value
      0E0
    • BLAST Score
      706.5 bits
    • Similarity
      88.93%
    • Coverage
      69.28%
    • Alignment (schematic)

      SEQ ID NO 5
      69.28% cov
      XM_001503774
      99.83% cov
    • Alignment Length
      578 bp
Occurrence
17 times in PatSeqDB
Tools
SEQ ID NO
6
Length
397
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:27477077
      NM_014443
      1 of 13 hits reported for Homo sapiens.
    • Hit length
      711 bp
    • E Value
      0E0
    • BLAST Score
      643.8 bits
    • Similarity
      96%
    • Coverage
      99.24%
    • Alignment (schematic)

      SEQ ID NO 6
      99.24% cov
      NM_014443
      55.27% cov
    • Alignment Length
      400 bp
    • CIGAR string
      9MIN90MI4MI45MN5M2I5MI106MNMD53MD15MD9MD11MD22MD4MD5M3H mismatches: 3 - insertions: 6 - deletions: 7
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114602736
      XM_001163413
    • Hit length
      714 bp
    • E Value
      5.19E-178
    • BLAST Score
      632.7 bits
    • Similarity
      95.5%
    • Coverage
      99.24%
    • Alignment (schematic)

      SEQ ID NO 6
      99.24% cov
      XM_001163413
      55.04% cov
    • Alignment Length
      400 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234954
      XM_003266623
    • Hit length
      713 bp
    • E Value
      1.12E-174
    • BLAST Score
      621.6 bits
    • Similarity
      95%
    • Coverage
      99.24%
    • Alignment (schematic)

      SEQ ID NO 6
      99.24% cov
      XM_003266623
      55.12% cov
    • Alignment Length
      400 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297676374
      XM_002816066
    • Hit length
      714 bp
    • E Value
      5.22E-173
    • BLAST Score
      616.1 bits
    • Similarity
      94.75%
    • Coverage
      99.24%
    • Alignment (schematic)

      SEQ ID NO 6
      99.24% cov
      XM_002816066
      55.04% cov
    • Alignment Length
      400 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:307685846
      AB590699
    • Hit length
      557 bp
    • E Value
      6.85E-162
    • BLAST Score
      579.1 bits
    • Similarity
      96.1%
    • Coverage
      89.17%
    • Alignment (schematic)

      SEQ ID NO 6
      89.17% cov
      AB590699
      63.2% cov
    • Alignment Length
      359 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297295430
      XM_001106071
    • Hit length
      698 bp
    • E Value
      1.49E-153
    • BLAST Score
      551.4 bits
    • Similarity
      92%
    • Coverage
      98.99%
    • Alignment (schematic)

      SEQ ID NO 6
      98.99% cov
      XM_001106071
      56.16% cov
    • Alignment Length
      400 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296193204
      XM_002744355
    • Hit length
      543 bp
    • E Value
      1.19E-134
    • BLAST Score
      488.6 bits
    • Similarity
      91.64%
    • Coverage
      89.17%
    • Alignment (schematic)

      SEQ ID NO 6
      89.17% cov
      XM_002744355
      64.83% cov
    • Alignment Length
      359 bp
Occurrence
46 times in PatSeqDB
Tools
SEQ ID NO
7
Length
230
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:27477078
      NM_013278
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      1,048 bp
    • E Value
      5.15E-116
    • BLAST Score
      425.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_013278
      21.95% cov
    • Alignment Length
      230 bp
    • CIGAR string
      230M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332846638
      XM_523458
    • Hit length
      1,039 bp
    • E Value
      2.4E-114
    • BLAST Score
      420.3 bits
    • Similarity
      99.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_523458
      22.14% cov
    • Alignment Length
      230 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265752
      XM_003281832
    • Hit length
      1,037 bp
    • E Value
      1.14E-97
    • BLAST Score
      364.9 bits
    • Similarity
      95.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003281832
      22.18% cov
    • Alignment Length
      230 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297699427
      XM_002826742
    • Hit length
      1,000 bp
    • E Value
      2.47E-94
    • BLAST Score
      353.8 bits
    • Similarity
      94.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002826742
      23% cov
    • Alignment Length
      230 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297284650
      XM_001099282
    • Hit length
      1,245 bp
    • E Value
      1.16E-87
    • BLAST Score
      331.7 bits
    • Similarity
      92.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_001099282
      18.47% cov
    • Alignment Length
      230 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296231777
      XM_002761260
    • Hit length
      960 bp
    • E Value
      5.53E-66
    • BLAST Score
      259.7 bits
    • Similarity
      87.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002761260
      23.96% cov
    • Alignment Length
      231 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297485195
      XM_002694857
      1 of 4 hits reported for Bos taurus.
    • Hit length
      1,317 bp
    • E Value
      1.21E-52
    • BLAST Score
      215.3 bits
    • Similarity
      83.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002694857
      17.46% cov
    • Alignment Length
      234 bp
  • Meleagris gallopavo

    Meleagris gallopavo

    • Public DB hit
      GI:326927543
      XM_003209904
    • Hit length
      651 bp
    • E Value
      4.59E-17
    • BLAST Score
      97.1 bits
    • Similarity
      79.47%
    • Coverage
      63.04%
    • Alignment (schematic)

      SEQ ID NO 7
      63.04% cov
      XM_003209904
      22.27% cov
    • Alignment Length
      151 bp
Occurrence
17 times in PatSeqDB
Tools
SEQ ID NO
8
Length
24
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332846638
      XM_523458
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,039 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_523458
      2.31% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:27477078
      NM_013278
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      1,048 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_013278
      2.29% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265752
      XM_003281832
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,037 bp
    • E Value
      1.07E-2
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      91.67%
    • Alignment (schematic)

      SEQ ID NO 8
      91.67% cov
      XM_003281832
      2.12% cov
    • Alignment Length
      22 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297485195
      XM_002694857
      1 of 4 hits reported for Bos taurus.
    • Hit length
      1,317 bp
    • E Value
      1.07E-2
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      91.67%
    • Alignment (schematic)

      SEQ ID NO 8
      91.67% cov
      XM_002694857
      1.67% cov
    • Alignment Length
      22 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297699427
      XM_002826742
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      1,000 bp
    • E Value
      1.68E-1
    • BLAST Score
      40.1 bits
    • Similarity
      95.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_002826742
      2.4% cov
    • Alignment Length
      24 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297284650
      XM_001099282
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      1,245 bp
    • E Value
      1.68E-1
    • BLAST Score
      40.1 bits
    • Similarity
      95.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_001099282
      1.93% cov
    • Alignment Length
      24 bp
Occurrence
183 times in PatSeqDB
Tools
SEQ ID NO
9
Length
24
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332846638
      XM_523458
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,039 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_523458
      2.31% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:27477078
      NM_013278
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      1,048 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_013278
      2.29% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
183 times in PatSeqDB
Tools
SEQ ID NO
10
Length
40
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332846638
      XM_523458
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,039 bp
    • E Value
      7.79E-13
    • BLAST Score
      79.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_523458
      3.85% cov
    • Alignment Length
      40 bp
    • CIGAR string
      40M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:27477078
      NM_013278
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      1,048 bp
    • E Value
      7.79E-13
    • BLAST Score
      79.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_013278
      3.82% cov
    • Alignment Length
      40 bp
    • CIGAR string
      40M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332265752
      XM_003281832
    • Hit length
      1,037 bp
    • E Value
      4.8E-11
    • BLAST Score
      73.8 bits
    • Similarity
      100%
    • Coverage
      92.5%
    • Alignment (schematic)

      SEQ ID NO 10
      92.5% cov
      XM_003281832
      3.57% cov
    • Alignment Length
      37 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297699427
      XM_002826742
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      1,000 bp
    • E Value
      1.9E-10
    • BLAST Score
      71.9 bits
    • Similarity
      97.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_002826742
      4% cov
    • Alignment Length
      40 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297284650
      XM_001099282
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      1,245 bp
    • E Value
      1.9E-10
    • BLAST Score
      71.9 bits
    • Similarity
      97.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_001099282
      3.21% cov
    • Alignment Length
      40 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297485195
      XM_002694857
      1 of 4 hits reported for Bos taurus.
    • Hit length
      1,317 bp
    • E Value
      1.17E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      82.5%
    • Alignment (schematic)

      SEQ ID NO 10
      82.5% cov
      XM_002694857
      2.51% cov
    • Alignment Length
      33 bp
  • Meleagris gallopavo

    Meleagris gallopavo

    • Public DB hit
      GI:326927543
      XM_003209904
      1 of 2 hits reported for Meleagris gallopavo.
    • Hit length
      651 bp
    • E Value
      1.13E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      70%
    • Alignment (schematic)

      SEQ ID NO 10
      70% cov
      XM_003209904
      4.3% cov
    • Alignment Length
      28 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73956936
      XM_846163
    • Hit length
      603 bp
    • E Value
      1.13E-5
    • BLAST Score
      56 bits
    • Similarity
      96.88%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 10
      80% cov
      XM_846163
      5.31% cov
    • Alignment Length
      32 bp
Occurrence
183 times in PatSeqDB
Tools

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