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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings
92 sequences found in this patent (in total)

Displaying 1 - 10 of 92 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
336
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002729
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002516
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP012030
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002185
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AM946981
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FN649414
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:261862227
      AB526355
      1 of 2 hits reported for synthetic construct.
    • Hit length
      4,304 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB526355
      7.81% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000819
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001665
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001396
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Delivery vector PDGREF

    Delivery vector PDGREF

    • Public DB hit
      GI:237871515
      FJ946915
    • Hit length
      8,358 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FJ946915
      4.02% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000948
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000946
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000802
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Delivery vector pIEFBPR

    Delivery vector pIEFBPR

    • Public DB hit
      GI:94540628
      DQ486035
    • Hit length
      8,965 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      DQ486035
      3.75% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Delivery vector pIEF16S

    Delivery vector pIEF16S

    • Public DB hit
      GI:86278332
      DQ358864
    • Hit length
      8,247 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      DQ358864
      4.07% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Delivery vector pDGIEF

    Delivery vector pDGIEF

    • Public DB hit
      GI:86278326
      DQ358863
    • Hit length
      8,717 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      DQ358863
      3.85% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP009048
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
      1 of 2 hits reported for Escherichia coli str. K-12 substr. MG1655.
    • Hit length
      4,639,675 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      U00096
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella sonnei Ss046

    Shigella sonnei Ss046

    • Public DB hit
      GI:73854091
      CP000038
    • Hit length
      4,825,265 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000038
      0.01% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:452512
      D16450
    • Hit length
      703 bp
    • E Value
      9.35E-175
    • BLAST Score
      621.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      D16450
      47.8% cov
    • Alignment Length
      336 bp
    • CIGAR string
      336M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
59 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
111
Type
peptide
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15803303
      NP_289336
    • Hit length
      111 aa
    • E Value
      1.7E-59
    • BLAST Score
      233 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_289336
      100% cov
    • Alignment Length
      111 aa
    • CIGAR string
      111M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 101-1

    Escherichia coli 101-1

    • Public DB hit
      GI:194439656
      ZP_03071727
    • Hit length
      111 aa
    • E Value
      3.63E-59
    • BLAST Score
      231.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_03071727
      100% cov
    • Alignment Length
      111 aa
    • CIGAR string
      87MN23M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli M718

    Escherichia coli M718

    • Public DB hit
      GI:331654265
      ZP_08355265
    • Hit length
      111 aa
    • E Value
      4.02E-59
    • BLAST Score
      231.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_08355265
      100% cov
    • Alignment Length
      111 aa
    • CIGAR string
      85MN25M mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella boydii Sb227

    Shigella boydii Sb227

    • Public DB hit
      GI:82545081
      YP_409028
    • Hit length
      111 aa
    • E Value
      6.91E-59
    • BLAST Score
      230.7 bits
    • Similarity
      99.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_409028
      100% cov
    • Alignment Length
      111 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:31616031
      1UB4_A
      1 of 2 hits reported for Escherichia coli.
    • Hit length
      110 aa
    • E Value
      7.7E-59
    • BLAST Score
      230.7 bits
    • Similarity
      100%
    • Coverage
      99.1%
    • Alignment (schematic)

      SEQ ID NO 2
      99.1% cov
      1UB4_A
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli UTI89

    Escherichia coli UTI89

    • Public DB hit
      GI:91212148
      YP_542134
    • Hit length
      111 aa
    • E Value
      8.16E-59
    • BLAST Score
      230.7 bits
    • Similarity
      99.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_542134
      100% cov
    • Alignment Length
      111 aa
  • Escherichia fergusonii ATCC 35469

    Escherichia fergusonii ATCC 35469

    • Public DB hit
      GI:218547702
      YP_002381493
    • Hit length
      111 aa
    • E Value
      9.57E-59
    • BLAST Score
      230.3 bits
    • Similarity
      99.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_002381493
      100% cov
    • Alignment Length
      111 aa
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157159087
      YP_001464104
    • Hit length
      111 aa
    • E Value
      2.04E-58
    • BLAST Score
      229.2 bits
    • Similarity
      99.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_001464104
      100% cov
    • Alignment Length
      111 aa
  • Escherichia coli MS 21-1

    Escherichia coli MS 21-1

    • Public DB hit
      GI:300936303
      ZP_07151235
    • Hit length
      111 aa
    • E Value
      2.36E-58
    • BLAST Score
      229.2 bits
    • Similarity
      98.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_07151235
      100% cov
    • Alignment Length
      111 aa
  • Escherichia coli 536

    Escherichia coli 536

    • Public DB hit
      GI:110642923
      YP_670653
    • Hit length
      111 aa
    • E Value
      3.4E-58
    • BLAST Score
      228.4 bits
    • Similarity
      98.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_670653
      100% cov
    • Alignment Length
      111 aa
  • Shigella sp. D9

    Shigella sp. D9

    • Public DB hit
      GI:256019431
      ZP_05433296
    • Hit length
      111 aa
    • E Value
      9.41E-58
    • BLAST Score
      226.9 bits
    • Similarity
      98.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_05433296
      100% cov
    • Alignment Length
      111 aa
  • Escherichia coli EC4100B

    Escherichia coli EC4100B

    • Public DB hit
      GI:320202425
      EFW76995
    • Hit length
      111 aa
    • E Value
      1.46E-57
    • BLAST Score
      226.5 bits
    • Similarity
      98.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EFW76995
      100% cov
    • Alignment Length
      111 aa
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:170018972
      YP_001723926
    • Hit length
      103 aa
    • E Value
      1.96E-54
    • BLAST Score
      216.1 bits
    • Similarity
      100%
    • Coverage
      92.79%
    • Alignment (schematic)

      SEQ ID NO 2
      92.79% cov
      YP_001723926
      100% cov
    • Alignment Length
      103 aa
Occurrence
98 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
333
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Salmonella enterica subsp. enterica serovar Dublin

    Salmonella enterica subsp. enterica serovar Dublin

    • Public DB hit
      GI:327536632
      JF267652
    • Hit length
      88,505 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF267652
      0.38% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312949035
      CP001856
    • Hit length
      147,060 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001856
      0.23% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:308826678
      FQ482074
      1 of 11 hits reported for Escherichia coli.
    • Hit length
      165,657 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FQ482074
      0.2% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Salmonella enterica subsp. enterica serovar Typhimurium

    Salmonella enterica subsp. enterica serovar Typhimurium

    • Public DB hit
      GI:304376130
      AB576781
      1 of 2 hits reported for Salmonella enterica subsp. enterica serovar Typhimurium.
    • Hit length
      112,671 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB576781
      0.3% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Klebsiella pneumoniae

    Klebsiella pneumoniae

    • Public DB hit
      GI:290792160
      FJ876827
    • Hit length
      147,416 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FJ876827
      0.23% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMN026

    Escherichia coli UMN026

    • Public DB hit
      GI:218349957
      CU928148
    • Hit length
      122,301 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CU928148
      0.27% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SMS-3-5

    Escherichia coli SMS-3-5

    • Public DB hit
      GI:170522036
      CP000971
    • Hit length
      130,440 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000971
      0.26% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • uncultured bacterium

    uncultured bacterium

    • Public DB hit
      GI:62550774
      AJ851089
    • Hit length
      120,592 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AJ851089
      0.28% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmid R1

    Plasmid R1

    • Public DB hit
      GI:45955
      X06240
    • Hit length
      1,510 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      X06240
      22.05% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella flexneri 2b

    Shigella flexneri 2b

    • Public DB hit
      GI:5103148
      AP000342
    • Hit length
      94,281 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AP000342
      0.35% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pKID19

    Cloning vector pKID19

    • Public DB hit
      GI:7799033
      AJ237753
    • Hit length
      3,026 bp
    • E Value
      1.55E-172
    • BLAST Score
      614.2 bits
    • Similarity
      100%
    • Coverage
      99.7%
    • Alignment (schematic)

      SEQ ID NO 3
      99.7% cov
      AJ237753
      10.97% cov
    • Alignment Length
      332 bp
    • CIGAR string
      1H332M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pKID18

    Cloning vector pKID18

    • Public DB hit
      GI:7799030
      AJ237752
    • Hit length
      3,030 bp
    • E Value
      1.55E-172
    • BLAST Score
      614.2 bits
    • Similarity
      100%
    • Coverage
      99.7%
    • Alignment (schematic)

      SEQ ID NO 3
      99.7% cov
      AJ237752
      10.96% cov
    • Alignment Length
      332 bp
    • CIGAR string
      1H332M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332346451
      CP002730
    • Hit length
      81,883 bp
    • E Value
      2E-171
    • BLAST Score
      610.5 bits
    • Similarity
      99.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP002730
      0.41% cov
    • Alignment Length
      333 bp
    • CIGAR string
      215MN117M mismatches: 1 - insertions: 0 - deletions: 0
  • Cloning vector pTarg1

    Cloning vector pTarg1

    • Public DB hit
      GI:42557811
      AJ430834
    • Hit length
      7,511 bp
    • E Value
      2E-171
    • BLAST Score
      610.5 bits
    • Similarity
      100%
    • Coverage
      99.1%
    • Alignment (schematic)

      SEQ ID NO 3
      99.1% cov
      AJ430834
      4.39% cov
    • Alignment Length
      330 bp
    • CIGAR string
      3H330M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
30 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
110
Type
peptide
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMN026

    Escherichia coli UMN026

    • Public DB hit
      GI:218692851
      YP_002405963
    • Hit length
      154 aa
    • E Value
      3.36E-56
    • BLAST Score
      221.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_002405963
      71.43% cov
    • Alignment Length
      110 aa
    • CIGAR string
      110M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332346486
      AEE59819
    • Hit length
      136 aa
    • E Value
      7.24E-56
    • BLAST Score
      220.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AEE59819
      80.88% cov
    • Alignment Length
      110 aa
    • CIGAR string
      110M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:221218609
      YP_002527567
      1 of 3 hits reported for Escherichia coli.
    • Hit length
      136 aa
    • E Value
      8E-56
    • BLAST Score
      220.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_002527567
      80.88% cov
    • Alignment Length
      110 aa
    • CIGAR string
      110M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SMS-3-5

    Escherichia coli SMS-3-5

    • Public DB hit
      GI:170650854
      YP_001740040
    • Hit length
      121 aa
    • E Value
      1.39E-55
    • BLAST Score
      219.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_001740040
      90.91% cov
    • Alignment Length
      110 aa
  • Plasmid R100

    Plasmid R100

    • Public DB hit
      GI:50346332
      NP_052994
    • Hit length
      110 aa
    • E Value
      1.65E-55
    • BLAST Score
      219.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_052994
      100% cov
    • Alignment Length
      110 aa
  • Cloning vector pKID18

    Cloning vector pKID18

    • Public DB hit
      GI:7799031
      CAB90820
    • Hit length
      134 aa
    • E Value
      1.83E-55
    • BLAST Score
      219.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAB90820
      82.09% cov
    • Alignment Length
      110 aa
  • Cloning vector pKID19

    Cloning vector pKID19

    • Public DB hit
      GI:7799034
      CAB90822
    • Hit length
      135 aa
    • E Value
      2.27E-55
    • BLAST Score
      219.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAB90822
      81.48% cov
    • Alignment Length
      110 aa
  • Escherichia coli M863

    Escherichia coli M863

    • Public DB hit
      GI:323964440
      EGB59918
    • Hit length
      110 aa
    • E Value
      5.59E-55
    • BLAST Score
      218 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EGB59918
      100% cov
    • Alignment Length
      110 aa
  • Cloning vector pTarg1

    Cloning vector pTarg1

    • Public DB hit
      GI:42557815
      CAD27776
    • Hit length
      111 aa
    • E Value
      8E-55
    • BLAST Score
      217.2 bits
    • Similarity
      100%
    • Coverage
      99.09%
    • Alignment (schematic)

      SEQ ID NO 4
      99.09% cov
      CAD27776
      98.2% cov
    • Alignment Length
      109 aa
  • Escherichia coli B7A

    Escherichia coli B7A

    • Public DB hit
      GI:191169403
      ZP_03031144
    • Hit length
      110 aa
    • E Value
      1.8E-54
    • BLAST Score
      216.1 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_03031144
      100% cov
    • Alignment Length
      110 aa
  • IncL/M plasmid R446b

    IncL/M plasmid R446b

    • Public DB hit
      GI:2688953
      AAC82516
    • Hit length
      121 aa
    • E Value
      6.94E-54
    • BLAST Score
      214.2 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAC82516
      90.91% cov
    • Alignment Length
      110 aa
  • Erwinia amylovora

    Erwinia amylovora

    • Public DB hit
      GI:38638092
      NP_943202
    • Hit length
      133 aa
    • E Value
      9.38E-54
    • BLAST Score
      213.8 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_943202
      82.71% cov
    • Alignment Length
      110 aa
  • Citrobacter freundii

    Citrobacter freundii

    • Public DB hit
      GI:27383432
      NP_774962
    • Hit length
      110 aa
    • E Value
      2.41E-53
    • BLAST Score
      212.2 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_774962
      100% cov
    • Alignment Length
      110 aa
  • Photorhabdus luminescens subsp. laumondii TTO1

    Photorhabdus luminescens subsp. laumondii TTO1

    • Public DB hit
      GI:37526267
      NP_929611
    • Hit length
      129 aa
    • E Value
      1.8E-48
    • BLAST Score
      196.1 bits
    • Similarity
      91.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_929611
      85.27% cov
    • Alignment Length
      110 aa
Occurrence
50 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
249
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002729
      0% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002516
      0.01% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP012030
      0.01% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002185
      0.01% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AM946981
      0.01% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001846
      0% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP010960
      0% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP010958
      0% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP010953
      0% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001368
      0% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000819
      0.01% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001665
      0.01% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001396
      0.01% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Delivery vector PDGREF

    Delivery vector PDGREF

    • Public DB hit
      GI:237871515
      FJ946915
    • Hit length
      8,358 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FJ946915
      2.98% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209761465
      EU896489
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      249 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EU896489
      100% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218359353
      CU928160
    • Hit length
      4,700,560 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CU928160
      0.01% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CU928145
      0% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SE11

    Escherichia coli SE11

    • Public DB hit
      GI:209910450
      AP009240
    • Hit length
      4,887,515 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP009240
      0.01% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EC4115

    Escherichia coli O157:H7 str. EC4115

    • Public DB hit
      GI:209157093
      CP001164
    • Hit length
      5,572,075 bp
    • E Value
      1.54E-126
    • BLAST Score
      460.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001164
      0% cov
    • Alignment Length
      249 bp
    • CIGAR string
      249M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
52 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
82
Type
peptide
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15803304
      NP_289337
    • Hit length
      82 aa
    • E Value
      5.12E-39
    • BLAST Score
      164.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_289337
      100% cov
    • Alignment Length
      82 aa
    • CIGAR string
      82M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:31616033
      1UB4_C
    • Hit length
      85 aa
    • E Value
      6.97E-39
    • BLAST Score
      164.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      1UB4_C
      96.47% cov
    • Alignment Length
      82 aa
    • CIGAR string
      82M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli M718

    Escherichia coli M718

    • Public DB hit
      GI:331654266
      ZP_08355266
    • Hit length
      82 aa
    • E Value
      1.33E-38
    • BLAST Score
      163.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ZP_08355266
      100% cov
    • Alignment Length
      82 aa
    • CIGAR string
      68MN13M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309703141
      CBJ02475
    • Hit length
      82 aa
    • E Value
      2.93E-38
    • BLAST Score
      162.2 bits
    • Similarity
      98.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CBJ02475
      100% cov
    • Alignment Length
      82 aa
  • Escherichia coli ED1a

    Escherichia coli ED1a

    • Public DB hit
      GI:218690906
      YP_002399118
    • Hit length
      82 aa
    • E Value
      3.76E-38
    • BLAST Score
      161.8 bits
    • Similarity
      98.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_002399118
      100% cov
    • Alignment Length
      82 aa
  • Escherichia coli MS 21-1

    Escherichia coli MS 21-1

    • Public DB hit
      GI:300936302
      ZP_07151234
    • Hit length
      82 aa
    • E Value
      6.31E-38
    • BLAST Score
      161 bits
    • Similarity
      98.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ZP_07151234
      100% cov
    • Alignment Length
      82 aa
  • Escherichia coli IAI39

    Escherichia coli IAI39

    • Public DB hit
      GI:218701499
      YP_002409128
    • Hit length
      82 aa
    • E Value
      7.21E-38
    • BLAST Score
      161 bits
    • Similarity
      98.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_002409128
      100% cov
    • Alignment Length
      82 aa
  • Escherichia coli OP50

    Escherichia coli OP50

    • Public DB hit
      GI:297518637
      ZP_06937023
    • Hit length
      65 aa
    • E Value
      2.42E-28
    • BLAST Score
      129.4 bits
    • Similarity
      100%
    • Coverage
      79.27%
    • Alignment (schematic)

      SEQ ID NO 6
      79.27% cov
      ZP_06937023
      100% cov
    • Alignment Length
      65 aa
  • Xenorhabdus bovienii SS-2004

    Xenorhabdus bovienii SS-2004

    • Public DB hit
      GI:290473518
      YP_003466388
    • Hit length
      81 aa
    • E Value
      1.76E-14
    • BLAST Score
      83.2 bits
    • Similarity
      77.63%
    • Coverage
      92.68%
    • Alignment (schematic)

      SEQ ID NO 6
      92.68% cov
      YP_003466388
      92.59% cov
    • Alignment Length
      76 aa
Occurrence
54 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
258
Type
DNA
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Salmonella enterica subsp. enterica serovar Dublin

    Salmonella enterica subsp. enterica serovar Dublin

    • Public DB hit
      GI:327536632
      JF267652
    • Hit length
      88,505 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      JF267652
      0.29% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312949035
      CP001856
    • Hit length
      147,060 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001856
      0.18% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:308826678
      FQ482074
      1 of 12 hits reported for Escherichia coli.
    • Hit length
      165,657 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      FQ482074
      0.16% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Salmonella enterica subsp. enterica serovar Typhimurium

    Salmonella enterica subsp. enterica serovar Typhimurium

    • Public DB hit
      GI:304376130
      AB576781
      1 of 2 hits reported for Salmonella enterica subsp. enterica serovar Typhimurium.
    • Hit length
      112,671 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AB576781
      0.23% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Klebsiella pneumoniae

    Klebsiella pneumoniae

    • Public DB hit
      GI:290792160
      FJ876827
    • Hit length
      147,416 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      FJ876827
      0.18% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMN026

    Escherichia coli UMN026

    • Public DB hit
      GI:218349957
      CU928148
    • Hit length
      122,301 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CU928148
      0.21% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SMS-3-5

    Escherichia coli SMS-3-5

    • Public DB hit
      GI:170522036
      CP000971
    • Hit length
      130,440 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000971
      0.2% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • uncultured bacterium

    uncultured bacterium

    • Public DB hit
      GI:62550774
      AJ851089
    • Hit length
      120,592 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AJ851089
      0.21% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmid R1

    Plasmid R1

    • Public DB hit
      GI:45955
      X06240
    • Hit length
      1,510 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      X06240
      17.09% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella flexneri 2b

    Shigella flexneri 2b

    • Public DB hit
      GI:5103148
      AP000342
    • Hit length
      94,281 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AP000342
      0.27% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmid pSM1

    Plasmid pSM1

    • Public DB hit
      GI:1845359
      S80100
    • Hit length
      5,704 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      S80100
      4.52% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:1164902
      X94336
    • Hit length
      11,142 bp
    • E Value
      1.59E-131
    • BLAST Score
      477.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      X94336
      2.32% cov
    • Alignment Length
      258 bp
    • CIGAR string
      258M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332346451
      CP002730
    • Hit length
      81,883 bp
    • E Value
      3.45E-128
    • BLAST Score
      466.5 bits
    • Similarity
      99.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP002730
      0.32% cov
    • Alignment Length
      258 bp
    • CIGAR string
      83MN104MN69M mismatches: 2 - insertions: 0 - deletions: 0
Occurrence
45 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
85
Type
peptide
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Shigella flexneri 2b

    Shigella flexneri 2b

    • Public DB hit
      GI:9507662
      NP_052993
    • Hit length
      85 aa
    • E Value
      5.76E-42
    • BLAST Score
      174.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_052993
      100% cov
    • Alignment Length
      85 aa
    • CIGAR string
      85M mismatches: 0 - insertions: 0 - deletions: 0
  • Erwinia amylovora

    Erwinia amylovora

    • Public DB hit
      GI:38638091
      NP_943201
    • Hit length
      85 aa
    • E Value
      3.76E-41
    • BLAST Score
      171.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_943201
      100% cov
    • Alignment Length
      85 aa
    • CIGAR string
      7MN38MN38M mismatches: 2 - insertions: 0 - deletions: 0
  • Klebsiella pneumoniae

    Klebsiella pneumoniae

    • Public DB hit
      GI:69209776
      AAZ03779
    • Hit length
      97 aa
    • E Value
      7.1E-41
    • BLAST Score
      171 bits
    • Similarity
      98.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAZ03779
      87.63% cov
    • Alignment Length
      85 aa
    • CIGAR string
      7MN38MN32MN5M mismatches: 3 - insertions: 0 - deletions: 0
  • IncL/M plasmid R446b

    IncL/M plasmid R446b

    • Public DB hit
      GI:2688952
      AAC82515
    • Hit length
      97 aa
    • E Value
      9.43E-41
    • BLAST Score
      170.6 bits
    • Similarity
      98.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAC82515
      87.63% cov
    • Alignment Length
      85 aa
  • Citrobacter freundii

    Citrobacter freundii

    • Public DB hit
      GI:27383431
      NP_774961
    • Hit length
      85 aa
    • E Value
      4.27E-40
    • BLAST Score
      168.3 bits
    • Similarity
      97.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_774961
      100% cov
    • Alignment Length
      85 aa
  • Photorhabdus luminescens subsp. laumondii TTO1

    Photorhabdus luminescens subsp. laumondii TTO1

    • Public DB hit
      GI:37526268
      NP_929612
    • Hit length
      85 aa
    • E Value
      3.35E-38
    • BLAST Score
      162.2 bits
    • Similarity
      97.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_929612
      100% cov
    • Alignment Length
      85 aa
  • Escherichia coli 3431

    Escherichia coli 3431

    • Public DB hit
      GI:315617949
      EFU98544
    • Hit length
      72 aa
    • E Value
      1.01E-33
    • BLAST Score
      147.1 bits
    • Similarity
      100%
    • Coverage
      84.71%
    • Alignment (schematic)

      SEQ ID NO 8
      84.71% cov
      EFU98544
      100% cov
    • Alignment Length
      72 aa
  • Enterobacter lignolyticus SCF1

    Enterobacter lignolyticus SCF1

    • Public DB hit
      GI:311279015
      YP_003941246
    • Hit length
      85 aa
    • E Value
      1.09E-30
    • BLAST Score
      137.1 bits
    • Similarity
      87.95%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      YP_003941246
      97.65% cov
    • Alignment Length
      83 aa
  • Salmonella enterica subsp. arizonae serovar 62:z4,z23:- str. RSK2980

    Salmonella enterica subsp. arizonae serovar 62:z4,z23:- str. RSK2980

    • Public DB hit
      GI:161506327
      YP_001573440
    • Hit length
      143 aa
    • E Value
      7.12E-30
    • BLAST Score
      134.4 bits
    • Similarity
      86.75%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      YP_001573440
      58.04% cov
    • Alignment Length
      83 aa
  • Enterobacteriaceae bacterium 9_2_54FAA

    Enterobacteriaceae bacterium 9_2_54FAA

    • Public DB hit
      GI:317492456
      ZP_07950885
    • Hit length
      85 aa
    • E Value
      2.68E-29
    • BLAST Score
      132.5 bits
    • Similarity
      86.75%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      ZP_07950885
      97.65% cov
    • Alignment Length
      83 aa
  • Escherichia coli LF82

    Escherichia coli LF82

    • Public DB hit
      GI:222033738
      CAP76479
    • Hit length
      143 aa
    • E Value
      6.13E-29
    • BLAST Score
      131.3 bits
    • Similarity
      86.75%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      CAP76479
      58.04% cov
    • Alignment Length
      83 aa
  • Shigella flexneri CDC 796-83

    Shigella flexneri CDC 796-83

    • Public DB hit
      GI:320184149
      EFW58966
    • Hit length
      85 aa
    • E Value
      6.66E-29
    • BLAST Score
      131.3 bits
    • Similarity
      85.54%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      EFW58966
      97.65% cov
    • Alignment Length
      83 aa
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312946591
      ADR27418
    • Hit length
      85 aa
    • E Value
      7.12E-29
    • BLAST Score
      131.3 bits
    • Similarity
      86.75%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      ADR27418
      97.65% cov
    • Alignment Length
      83 aa
  • Klebsiella pneumoniae 342

    Klebsiella pneumoniae 342

    • Public DB hit
      GI:206577196
      YP_002237591
    • Hit length
      85 aa
    • E Value
      8E-29
    • BLAST Score
      131 bits
    • Similarity
      85.54%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      YP_002237591
      97.65% cov
    • Alignment Length
      83 aa
  • Klebsiella sp. 1_1_55

    Klebsiella sp. 1_1_55

    • Public DB hit
      GI:290508714
      ZP_06548085
    • Hit length
      109 aa
    • E Value
      8.63E-29
    • BLAST Score
      131 bits
    • Similarity
      85.54%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      ZP_06548085
      76.15% cov
    • Alignment Length
      83 aa
  • Pantoea ananatis AJ13355

    Pantoea ananatis AJ13355

    • Public DB hit
      GI:327394291
      BAK11713
    • Hit length
      109 aa
    • E Value
      2.55E-28
    • BLAST Score
      129.4 bits
    • Similarity
      85.54%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      BAK11713
      76.15% cov
    • Alignment Length
      83 aa
Occurrence
28 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
24
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309703141
      CBJ02475
    • Hit length
      82 aa
    • E Value
      4.73E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CBJ02475
      29.27% cov
    • Alignment Length
      24 aa
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15803304
      NP_289337
    • Hit length
      82 aa
    • E Value
      5.14E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_289337
      29.27% cov
    • Alignment Length
      24 aa
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ED1a

    Escherichia coli ED1a

    • Public DB hit
      GI:218690906
      YP_002399118
    • Hit length
      82 aa
    • E Value
      5.18E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_002399118
      29.27% cov
    • Alignment Length
      24 aa
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli OP50

    Escherichia coli OP50

    • Public DB hit
      GI:297518637
      ZP_06937023
    • Hit length
      65 aa
    • E Value
      6.23E-5
    • BLAST Score
      51.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_06937023
      36.92% cov
    • Alignment Length
      24 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:31616033
      1UB4_C
    • Hit length
      85 aa
    • E Value
      6.23E-5
    • BLAST Score
      51.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      1UB4_C
      28.24% cov
    • Alignment Length
      24 aa
  • Escherichia coli OK1180

    Escherichia coli OK1180

    • Public DB hit
      GI:323181137
      EFZ66669
    • Hit length
      39 aa
    • E Value
      8.77E-5
    • BLAST Score
      51.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      EFZ66669
      61.54% cov
    • Alignment Length
      24 aa
  • Escherichia coli M718

    Escherichia coli M718

    • Public DB hit
      GI:331654266
      ZP_08355266
    • Hit length
      82 aa
    • E Value
      1.21E-4
    • BLAST Score
      50.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_08355266
      29.27% cov
    • Alignment Length
      24 aa
  • Escherichia coli MS 21-1

    Escherichia coli MS 21-1

    • Public DB hit
      GI:300936302
      ZP_07151234
    • Hit length
      82 aa
    • E Value
      1.24E-4
    • BLAST Score
      50.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_07151234
      29.27% cov
    • Alignment Length
      24 aa
  • Escherichia coli IAI39

    Escherichia coli IAI39

    • Public DB hit
      GI:218701499
      YP_002409128
    • Hit length
      82 aa
    • E Value
      1.43E-4
    • BLAST Score
      50.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_002409128
      29.27% cov
    • Alignment Length
      24 aa
  • Methylobacter tundripaludum SV96

    Methylobacter tundripaludum SV96

    • Public DB hit
      GI:307825415
      ZP_07655634
    • Hit length
      81 aa
    • E Value
      5.06E0
    • BLAST Score
      35.4 bits
    • Similarity
      90.48%
    • Coverage
      87.5%
    • Alignment (schematic)

      SEQ ID NO 9
      87.5% cov
      ZP_07655634
      25.93% cov
    • Alignment Length
      21 aa
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
18
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309703141
      CBJ02475
    • Hit length
      82 aa
    • E Value
      5.04E-2
    • BLAST Score
      41.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CBJ02475
      21.95% cov
    • Alignment Length
      18 aa
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ED1a

    Escherichia coli ED1a

    • Public DB hit
      GI:218690906
      YP_002399118
      1 of 2 hits reported for Escherichia coli ED1a.
    • Hit length
      82 aa
    • E Value
      5.39E-2
    • BLAST Score
      41.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_002399118
      21.95% cov
    • Alignment Length
      18 aa
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15803304
      NP_289337
      1 of 2 hits reported for Escherichia coli O157:H7 str. EDL933.
    • Hit length
      82 aa
    • E Value
      5.39E-2
    • BLAST Score
      41.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_289337
      21.95% cov
    • Alignment Length
      18 aa
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli OP50

    Escherichia coli OP50

    • Public DB hit
      GI:297518637
      ZP_06937023
    • Hit length
      65 aa
    • E Value
      6E-2
    • BLAST Score
      41.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_06937023
      27.69% cov
    • Alignment Length
      18 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:31616033
      1UB4_C
    • Hit length
      85 aa
    • E Value
      6.58E-2
    • BLAST Score
      41.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      1UB4_C
      21.18% cov
    • Alignment Length
      18 aa
  • Escherichia coli OK1180

    Escherichia coli OK1180

    • Public DB hit
      GI:323181137
      EFZ66669
    • Hit length
      39 aa
    • E Value
      8.96E-2
    • BLAST Score
      40.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EFZ66669
      46.15% cov
    • Alignment Length
      18 aa
  • Escherichia coli MS 21-1

    Escherichia coli MS 21-1

    • Public DB hit
      GI:300936302
      ZP_07151234
    • Hit length
      82 aa
    • E Value
      1.3E-1
    • BLAST Score
      40 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_07151234
      21.95% cov
    • Alignment Length
      18 aa
  • Escherichia coli M718

    Escherichia coli M718

    • Public DB hit
      GI:331654266
      ZP_08355266
    • Hit length
      82 aa
    • E Value
      1.36E-1
    • BLAST Score
      40 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_08355266
      21.95% cov
    • Alignment Length
      18 aa
  • Escherichia coli IAI39

    Escherichia coli IAI39

    • Public DB hit
      GI:218701499
      YP_002409128
    • Hit length
      82 aa
    • E Value
      1.41E-1
    • BLAST Score
      40 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_002409128
      21.95% cov
    • Alignment Length
      18 aa
Occurrence
11 times in PatSeqDB
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