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Data obtained from: USPTO Fulltext

130 sequences found in this patent (in total)

Displaying 1 - 10 of 130 sequences

SEQ ID NO

Length

Type

Locations

Organisms

Occurrence

Tools

SEQ ID NO

Length

Type

nucleotide

Locations

Detailed Description

Declared organism:
Artificial

Determined organism:

Caenorhabditis remanei
Caenorhabditis remanei
Public DB hit
GI:308470152
XM_003097263
1 of 3 hits reported for Caenorhabditis remanei.

Hit length
4,365 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
XM_003097263

0.41% cov

Alignment Length
18 bp

CIGAR string
18M mismatches: 0 - insertions: 0 - deletions: 0
Xenopus (Silurana) tropicalis
Xenopus (Silurana) tropicalis
Public DB hit
GI:301617512
XM_002938140

Hit length
1,900 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
XM_002938140

0.95% cov

Alignment Length
18 bp
Drosophila sechellia
Drosophila sechellia
Public DB hit
GI:195340258
XM_002036697

Hit length
309 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
XM_002036697

5.83% cov

Alignment Length
18 bp
Culex quinquefasciatus
Culex quinquefasciatus
Public DB hit
GI:170052793
XM_001862348

Hit length
827 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
XM_001862348

2.18% cov

Alignment Length
18 bp
Cryptosporidium hominis TU502
Cryptosporidium hominis TU502
Public DB hit
GI:67581119
XM_659743

Hit length
387 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
XM_659743

4.65% cov

Alignment Length
18 bp
uncultured bacterium
uncultured bacterium
Public DB hit
GI:337294962
FR852462

Hit length
1,006 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
FR852462

1.79% cov

Alignment Length
18 bp
Cloning vector pAW8ENdeI-C3HA
Cloning vector pAW8ENdeI-C3HA
Public DB hit
GI:336089660
JF340118

Hit length
8,433 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF340118

0.21% cov

Alignment Length
18 bp
Cloning vector pAW8ENdeI-CTAP
Cloning vector pAW8ENdeI-CTAP
Public DB hit
GI:336089658
JF340117

Hit length
8,892 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF340117

0.2% cov

Alignment Length
18 bp
Cloning vector pAW8ENdeI-cyEGFP
Cloning vector pAW8ENdeI-cyEGFP
Public DB hit
GI:336089656
JF340116

Hit length
9,057 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF340116

0.2% cov

Alignment Length
18 bp
Cloning vector pAW8ENdeI
Cloning vector pAW8ENdeI
Public DB hit
GI:336089653
JF340115

Hit length
8,289 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF340115

0.22% cov

Alignment Length
18 bp
Gene deletion vector pEMG
Gene deletion vector pEMG
Public DB hit
GI:335893243
JF965437

Hit length
3,168 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF965437

0.57% cov

Alignment Length
18 bp
Cloning vector pBOB
Cloning vector pBOB
Public DB hit
GI:335355349
JF927991

Hit length
8,730 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF927991

0.21% cov

Alignment Length
18 bp
Expression vector pLoxGentrc
Expression vector pLoxGentrc
Public DB hit
GI:334265229
JF934954

Hit length
6,295 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF934954

0.29% cov

Alignment Length
18 bp
Cloning vector pPLV34
Cloning vector pPLV34
Public DB hit
GI:334085873
JF909487

Hit length
5,606 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909487

0.32% cov

Alignment Length
18 bp
Cloning vector pPLV33
Cloning vector pPLV33
Public DB hit
GI:334085870
JF909486

Hit length
5,251 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909486

0.34% cov

Alignment Length
18 bp
Cloning vector pPLV32
Cloning vector pPLV32
Public DB hit
GI:334085867
JF909485

Hit length
4,898 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909485

0.37% cov

Alignment Length
18 bp
Cloning vector pPLV31
Cloning vector pPLV31
Public DB hit
GI:334085864
JF909484

Hit length
9,507 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909484

0.19% cov

Alignment Length
18 bp
Cloning vector pPLV30
Cloning vector pPLV30
Public DB hit
GI:334085861
JF909483

Hit length
9,152 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909483

0.2% cov

Alignment Length
18 bp
Cloning vector pPLV29
Cloning vector pPLV29
Public DB hit
GI:334085858
JF909482

Hit length
8,799 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909482

0.2% cov

Alignment Length
18 bp
Cloning vector pPLV28
Cloning vector pPLV28
Public DB hit
GI:334085855
JF909481

Hit length
6,389 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909481

0.28% cov

Alignment Length
18 bp
Cloning vector pPLV27
Cloning vector pPLV27
Public DB hit
GI:334085852
JF909480

Hit length
6,750 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909480

0.27% cov

Alignment Length
18 bp
Cloning vector pPLV26
Cloning vector pPLV26
Public DB hit
GI:334085849
JF909479

Hit length
6,395 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909479

0.28% cov

Alignment Length
18 bp
Cloning vector pPLV25
Cloning vector pPLV25
Public DB hit
GI:334085846
JF909478

Hit length
6,042 bp

E Value
1.05E0

BLAST Score
36.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
JF909478

0.3% cov

Alignment Length
18 bp

Occurrence

1695 times in PatSeqDB

in 304 extended families
(11 referenced in claims)
in 344 simple families
(11 referenced in claims)
in 1401 documents

Tools

PatSeq Finder

SEQ ID NO

Length

Type

nucleotide

Locations

Detailed Description

Declared organism:
Artificial

Determined organism:

Plasmodium berghei ANKA
Plasmodium berghei ANKA
Public DB hit
GI:68059336
XM_666562

Hit length
827 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
XM_666562

2.42% cov

Alignment Length
20 bp

CIGAR string
20M mismatches: 0 - insertions: 0 - deletions: 0
Cloning vector pFA-pHluorin-ARG4
Cloning vector pFA-pHluorin-ARG4
Public DB hit
GI:336287747
JN051501

Hit length
5,412 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JN051501

0.37% cov

Alignment Length
20 bp

CIGAR string
20M mismatches: 0 - insertions: 0 - deletions: 0
Cloning vector pFA-pHluorin-URA3
Cloning vector pFA-pHluorin-URA3
Public DB hit
GI:336287744
JN051500

Hit length
4,803 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JN051500

0.42% cov

Alignment Length
20 bp

CIGAR string
20M mismatches: 0 - insertions: 0 - deletions: 0
Cloning vector pFA-LIFEACT-GFP-URA3
Cloning vector pFA-LIFEACT-GFP-URA3
Public DB hit
GI:336287741
JN051499

Hit length
5,074 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JN051499

0.39% cov

Alignment Length
20 bp
Cloning vector pFA-TagRFP-T-CdHIS1
Cloning vector pFA-TagRFP-T-CdHIS1
Public DB hit
GI:336287738
JN051498

Hit length
4,627 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JN051498

0.43% cov

Alignment Length
20 bp
Cloning vector pFA-TagRFP-T-CmLEU2
Cloning vector pFA-TagRFP-T-CmLEU2
Public DB hit
GI:336287735
JN051497

Hit length
4,822 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JN051497

0.41% cov

Alignment Length
20 bp
Cloning vector pFA-TagRFP-T-ARG4
Cloning vector pFA-TagRFP-T-ARG4
Public DB hit
GI:336287732
JN051496

Hit length
5,433 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JN051496

0.37% cov

Alignment Length
20 bp
Cloning vector pFA-TagRFP-T-URA3
Cloning vector pFA-TagRFP-T-URA3
Public DB hit
GI:336287729
JN051495

Hit length
4,824 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JN051495

0.41% cov

Alignment Length
20 bp
Cloning vector pBOB
Cloning vector pBOB
Public DB hit
GI:335355349
JF927991

Hit length
8,730 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF927991

0.23% cov

Alignment Length
20 bp
uncultured Mortierella
uncultured Mortierella
Public DB hit
GI:334904541
JF831505
1 of 2 hits reported for uncultured Mortierella.

Hit length
767 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF831505

2.61% cov

Alignment Length
20 bp
uncultured Trichoderma
uncultured Trichoderma
Public DB hit
GI:334904520
JF831474

Hit length
816 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF831474

2.45% cov

Alignment Length
20 bp
Cloning vector pTrypRNAiGate
Cloning vector pTrypRNAiGate
Public DB hit
GI:334854400
JF748716

Hit length
9,177 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF748716

0.22% cov

Alignment Length
20 bp
Sebastes schlegelii
Sebastes schlegelii
Public DB hit
GI:335316739
HQ712167

Hit length
1,940 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
HQ712167

1.03% cov

Alignment Length
20 bp
Frankia symbiont of Datisca glomerata
Frankia symbiont of Datisca glomerata
Public DB hit
GI:334861322
CP002802

Hit length
12,355 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
CP002802

0.16% cov

Alignment Length
20 bp
Cloning vector pPLV34
Cloning vector pPLV34
Public DB hit
GI:334085873
JF909487

Hit length
5,606 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909487

0.36% cov

Alignment Length
20 bp
Cloning vector pPLV33
Cloning vector pPLV33
Public DB hit
GI:334085870
JF909486

Hit length
5,251 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909486

0.38% cov

Alignment Length
20 bp
Cloning vector pPLV32
Cloning vector pPLV32
Public DB hit
GI:334085867
JF909485

Hit length
4,898 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909485

0.41% cov

Alignment Length
20 bp
Cloning vector pPLV31
Cloning vector pPLV31
Public DB hit
GI:334085864
JF909484

Hit length
9,507 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909484

0.21% cov

Alignment Length
20 bp
Cloning vector pPLV30
Cloning vector pPLV30
Public DB hit
GI:334085861
JF909483

Hit length
9,152 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909483

0.22% cov

Alignment Length
20 bp
Cloning vector pPLV29
Cloning vector pPLV29
Public DB hit
GI:334085858
JF909482

Hit length
8,799 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909482

0.23% cov

Alignment Length
20 bp
Cloning vector pPLV28
Cloning vector pPLV28
Public DB hit
GI:334085855
JF909481

Hit length
6,389 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909481

0.31% cov

Alignment Length
20 bp
Cloning vector pPLV27
Cloning vector pPLV27
Public DB hit
GI:334085852
JF909480

Hit length
6,750 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909480

0.3% cov

Alignment Length
20 bp
Cloning vector pPLV26
Cloning vector pPLV26
Public DB hit
GI:334085849
JF909479

Hit length
6,395 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909479

0.31% cov

Alignment Length
20 bp
Cloning vector pPLV25
Cloning vector pPLV25
Public DB hit
GI:334085846
JF909478

Hit length
6,042 bp

E Value
6.71E-2

BLAST Score
40.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
JF909478

0.33% cov

Alignment Length
20 bp

Occurrence

4344 times in PatSeqDB

Tools

PatSeq Finder

SEQ ID NO

Length

Type

nucleotide

Locations

Undetermined

Declared organism:
Artificial

Determined organism:

Influenza A virus (A/Changchun/01/2009(H1N1))
Influenza A virus (A/Changchun/01/2009(H1N1))
Public DB hit
GI:334886199
JN032403

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
JN032403

1.07% cov

Alignment Length
25 bp

CIGAR string
25M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/swine/Hubei/05/2009(H1N2))
Influenza A virus (A/swine/Hubei/05/2009(H1N2))
Public DB hit
GI:335353295
CY091758

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY091758

1.07% cov

Alignment Length
25 bp

CIGAR string
25M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/swine/Hubei/04/2009(H1N2))
Influenza A virus (A/swine/Hubei/04/2009(H1N2))
Public DB hit
GI:335353276
CY091750

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY091750

1.07% cov

Alignment Length
25 bp

CIGAR string
25M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/swine/Hubei/03/2009(H1N1))
Influenza A virus (A/swine/Hubei/03/2009(H1N1))
Public DB hit
GI:335353257
CY091742

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY091742

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/chicken/Bhutan/248009/2010(H5N1))
Influenza A virus (A/chicken/Bhutan/248009/2010(H5N1))
Public DB hit
GI:333361565
CY063470

Hit length
2,307 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY063470

1.08% cov

Alignment Length
25 bp
Influenza A virus (A/chicken/China/AH-10-01/2010(H9N2))
Influenza A virus (A/chicken/China/AH-10-01/2010(H9N2))
Public DB hit
GI:332640037
JF906203

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
JF906203

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/swine/Guangdong/34/2006(H1N1))
Influenza A virus (A/swine/Guangdong/34/2006(H1N1))
Public DB hit
GI:333033852
CY089864

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY089864

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/Muscovy duck/Fujian/FZ01/2008(H6N6))
Influenza A virus (A/Muscovy duck/Fujian/FZ01/2008(H6N6))
Public DB hit
GI:294712725
HM050396

Hit length
2,331 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
HM050396

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/swine/Nanchang/6/2010(H1N1))
Influenza A virus (A/swine/Nanchang/6/2010(H1N1))
Public DB hit
GI:321496169
JF275948

Hit length
2,342 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
JF275948

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/swine/Nanchang/5/2010(H1N1))
Influenza A virus (A/swine/Nanchang/5/2010(H1N1))
Public DB hit
GI:321496151
JF275940

Hit length
2,342 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
JF275940

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/swine/Nanchang/F9/2010(H1N1))
Influenza A virus (A/swine/Nanchang/F9/2010(H1N1))
Public DB hit
GI:321496133
JF275932

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
JF275932

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/swine/Nanchang/3/2010(H1N1))
Influenza A virus (A/swine/Nanchang/3/2010(H1N1))
Public DB hit
GI:321496115
JF275924

Hit length
2,342 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
JF275924

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/duck/Tibet/S2/2009(H9N2))
Influenza A virus (A/duck/Tibet/S2/2009(H9N2))
Public DB hit
GI:325910983
CY087184

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY087184

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/chicken/Tibet/S4/2009(H9N2))
Influenza A virus (A/chicken/Tibet/S4/2009(H9N2))
Public DB hit
GI:325910964
CY087176

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY087176

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/chicken/Tibet/S1/2009(H9N2))
Influenza A virus (A/chicken/Tibet/S1/2009(H9N2))
Public DB hit
GI:325910945
CY087168

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY087168

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/swine/Hubei/101/2009(H1N1))
Influenza A virus (A/swine/Hubei/101/2009(H1N1))
Public DB hit
GI:323648360
CY083005

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY083005

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/Ontario/3620/2010(H1N1))
Influenza A virus (A/Ontario/3620/2010(H1N1))
Public DB hit
GI:321117659
CY081066

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY081066

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/Ontario/804635/2010(H1N1))
Influenza A virus (A/Ontario/804635/2010(H1N1))
Public DB hit
GI:321117630
CY081098

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY081098

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/Ontario/778873/2010(H1N1))
Influenza A virus (A/Ontario/778873/2010(H1N1))
Public DB hit
GI:321117612
CY081090

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY081090

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/Ontario/741328/2010(H1N1))
Influenza A virus (A/Ontario/741328/2010(H1N1))
Public DB hit
GI:321117593
CY081082

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY081082

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/Ontario/720545/2010(H1N1))
Influenza A virus (A/Ontario/720545/2010(H1N1))
Public DB hit
GI:321117575
CY081074

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY081074

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/Ontario/130741/2010(H1N1))
Influenza A virus (A/Ontario/130741/2010(H1N1))
Public DB hit
GI:321117556
CY081058

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY081058

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/chicken/Nandurbar/7966/2006(H5N1))
Influenza A virus (A/chicken/Nandurbar/7966/2006(H5N1))
Public DB hit
GI:284517140
GU454578

Hit length
2,313 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
GU454578

1.08% cov

Alignment Length
25 bp
Influenza A virus (A/swine/Taiwan/CH-1204/2009(H1N1))
Influenza A virus (A/swine/Taiwan/CH-1204/2009(H1N1))
Public DB hit
GI:317015075
HQ728107

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
HQ728107

1.07% cov

Alignment Length
25 bp
Influenza A virus (A/swine/Taiwan/PT-1204/2009(H1N1))
Influenza A virus (A/swine/Taiwan/PT-1204/2009(H1N1))
Public DB hit
GI:317015057
HQ728099

Hit length
2,341 bp

E Value
2.09E-4

BLAST Score
50.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
HQ728099

1.07% cov

Alignment Length
25 bp

Occurrence

28 times in PatSeqDB

Tools

PatSeq Finder

SEQ ID NO

Length

Type

nucleotide

Locations

Undetermined

Declared organism:
Artificial

Determined organism:

Influenza A virus (A/swine/Pingtung/199-2/2002(H3N2))
Influenza A virus (A/swine/Pingtung/199-2/2002(H3N2))
Public DB hit
GI:225422948
FJ839891

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
FJ839891

1.14% cov

Alignment Length
26 bp

CIGAR string
26M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Tottori/1/07(H3N8))
Influenza A virus (A/equine/Tottori/1/07(H3N8))
Public DB hit
GI:327187711
AB591847

Hit length
2,298 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
AB591847

1.13% cov

Alignment Length
26 bp

CIGAR string
26M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/Hong Kong/1-10-MA21-1/1968(H3N2))
Influenza A virus (A/Hong Kong/1-10-MA21-1/1968(H3N2))
Public DB hit
GI:319899647
CY080530

Hit length
2,324 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY080530

1.12% cov

Alignment Length
26 bp

CIGAR string
26M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/Hong Kong/1-4-MA21-1/1968(H3N2))
Influenza A virus (A/Hong Kong/1-4-MA21-1/1968(H3N2))
Public DB hit
GI:319899630
CY080522

Hit length
2,324 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY080522

1.12% cov

Alignment Length
26 bp
Influenza A virus (A/Hong Kong/1-2-MA21-3/1968(H3N2))
Influenza A virus (A/Hong Kong/1-2-MA21-3/1968(H3N2))
Public DB hit
GI:319899594
CY080506

Hit length
2,324 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY080506

1.12% cov

Alignment Length
26 bp
Influenza A virus (A/swine/Italy/6/1981(H3N2))
Influenza A virus (A/swine/Italy/6/1981(H3N2))
Public DB hit
GI:315078716
CY077924

Hit length
2,337 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY077924

1.11% cov

Alignment Length
26 bp
Influenza A virus (A/Bilthoven/2668/1970(H3N2))
Influenza A virus (A/Bilthoven/2668/1970(H3N2))
Public DB hit
GI:315076924
CY077838

Hit length
2,341 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY077838

1.11% cov

Alignment Length
26 bp
Influenza A virus (A/canine/NY/dog3c15/2009(H3N8))
Influenza A virus (A/canine/NY/dog3c15/2009(H3N8))
Public DB hit
GI:307699707
HQ238128

Hit length
1,131 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
HQ238128

2.3% cov

Alignment Length
26 bp
Influenza A virus (A/canine/NY/dog4c06/2009(H3N8))
Influenza A virus (A/canine/NY/dog4c06/2009(H3N8))
Public DB hit
GI:307699705
HQ238127

Hit length
1,131 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
HQ238127

2.3% cov

Alignment Length
26 bp
Influenza A virus (A/canine/NY/dog4c13/2009(H3N8))
Influenza A virus (A/canine/NY/dog4c13/2009(H3N8))
Public DB hit
GI:307699704
HQ238126

Hit length
1,131 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
HQ238126

2.3% cov

Alignment Length
26 bp
Influenza A virus (A/canine/NY/dog4c07/2009(H3N8))
Influenza A virus (A/canine/NY/dog4c07/2009(H3N8))
Public DB hit
GI:307699702
HQ238125

Hit length
1,131 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
HQ238125

2.3% cov

Alignment Length
26 bp
Influenza A virus (A/canine/New York/158402-1/2008(H3N8))
Influenza A virus (A/canine/New York/158402-1/2008(H3N8))
Public DB hit
GI:304415041
CY067603

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067603

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/New York/145353/2008(H3N8))
Influenza A virus (A/canine/New York/145353/2008(H3N8))
Public DB hit
GI:304415022
CY067595

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067595

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/Pennsylvania/137154/2008(H3N8))
Influenza A virus (A/canine/Pennsylvania/137154/2008(H3N8))
Public DB hit
GI:304414994
CY067587

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067587

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/New York/51854/2008(H3N8))
Influenza A virus (A/canine/New York/51854/2008(H3N8))
Public DB hit
GI:304414972
CY067579

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067579

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/Colorado/6723-8/2008(H3N8))
Influenza A virus (A/canine/Colorado/6723-8/2008(H3N8))
Public DB hit
GI:304414953
CY067571
1 of 2 hits reported for Influenza A virus (A/canine/Colorado/6723-8/2008(H3N8)).

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067571

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/Pennsylvania/94930-3/2007(H3N8))
Influenza A virus (A/canine/Pennsylvania/94930-3/2007(H3N8))
Public DB hit
GI:304414839
CY067539

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067539

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/New York/115719/2007(H3N8))
Influenza A virus (A/canine/New York/115719/2007(H3N8))
Public DB hit
GI:304414820
CY067531

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067531

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/Florida/61156-2/2006(H3N8))
Influenza A virus (A/canine/Florida/61156-2/2006(H3N8))
Public DB hit
GI:304414801
CY067523
1 of 2 hits reported for Influenza A virus (A/canine/Florida/61156-2/2006(H3N8)).

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067523

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/Pennsylvania/10915/2007(H3N8))
Influenza A virus (A/canine/Pennsylvania/10915/2007(H3N8))
Public DB hit
GI:304414717
CY067499

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067499

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/Pennsylvania/10909/2007(H3N8))
Influenza A virus (A/canine/Pennsylvania/10909/2007(H3N8))
Public DB hit
GI:304414692
CY067491

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067491

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/Pennsylvania/16699/2007(H3N8))
Influenza A virus (A/canine/Pennsylvania/16699/2007(H3N8))
Public DB hit
GI:304414664
CY067483

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067483

1.14% cov

Alignment Length
26 bp
Influenza A virus (A/canine/Kentucky/118778/2006(H3N8))
Influenza A virus (A/canine/Kentucky/118778/2006(H3N8))
Public DB hit
GI:304414639
CY067475

Hit length
2,280 bp

E Value
6.17E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
CY067475

1.14% cov

Alignment Length
26 bp

Occurrence

28 times in PatSeqDB

Tools

PatSeq Finder

SEQ ID NO

Length

1,241

Type

nucleotide

Locations

Detailed Description, Summary

Declared organism:
Equine influenza virus H3N8

Determined organism:

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481145
CY030180

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,239.3 bits

Similarity

99.92%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 5

97.9% cov
CY030180

52.92% cov

Alignment Length
1,215 bp

CIGAR string
26H1130MN84M mismatches: 1 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481088
CY030156

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,239.3 bits

Similarity

99.84%

Coverage

98.15%

Alignment (schematic)

SEQ ID NO 5

98.15% cov
CY030156

52.98% cov

Alignment Length
1,218 bp

CIGAR string
23H1077MN54MN85M mismatches: 2 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481069
CY030148

Hit length
2,305 bp

E Value
0E0

BLAST Score
2,233.7 bits

Similarity

99.59%

Coverage

98.63%

Alignment (schematic)

SEQ ID NO 5

98.63% cov
CY030148

53.1% cov

Alignment Length
1,224 bp

CIGAR string
17H447MN209MN65MN359MN64MN75M mismatches: 5 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/2/1986(H3N8))
Influenza A virus (A/equine/Kentucky/2/1986(H3N8))
Public DB hit
GI:324063
M73526
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/2/1986(H3N8)).

Hit length
2,341 bp

E Value
0E0

BLAST Score
2,226.3 bits

Similarity

99.03%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
M73526

53.01% cov

Alignment Length
1,241 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433620
CY018876

Hit length
2,304 bp

E Value
0E0

BLAST Score
2,220.8 bits

Similarity

99.35%

Coverage

98.79%

Alignment (schematic)

SEQ ID NO 5

98.79% cov
CY018876

53.21% cov

Alignment Length
1,226 bp
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Public DB hit
GI:269820829
GU052343

Hit length
2,316 bp

E Value
0E0

BLAST Score
2,215.3 bits

Similarity

99.19%

Coverage

99.03%

Alignment (schematic)

SEQ ID NO 5

99.03% cov
GU052343

53.07% cov

Alignment Length
1,229 bp
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481107
CY030164

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,213.4 bits

Similarity

99.43%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 5

98.23% cov
CY030164

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:168480974
CY030108

Hit length
2,304 bp

E Value
0E0

BLAST Score
2,204.2 bits

Similarity

99.18%

Coverage

98.55%

Alignment (schematic)

SEQ ID NO 5

98.55% cov
CY030108

53.08% cov

Alignment Length
1,223 bp
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:168481126
CY030172

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,196.8 bits

Similarity

99.18%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 5

98.23% cov
CY030172

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481050
CY030140

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,196.8 bits

Similarity

99.18%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 5

98.23% cov
CY030140

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481031
CY030132

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,191.2 bits

Similarity

99.1%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 5

98.23% cov
CY030132

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168481012
CY030124

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,189.4 bits

Similarity

99.1%

Coverage

98.15%

Alignment (schematic)

SEQ ID NO 5

98.15% cov
CY030124

52.98% cov

Alignment Length
1,218 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480993
CY030116

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,189.4 bits

Similarity

99.1%

Coverage

98.15%

Alignment (schematic)

SEQ ID NO 5

98.15% cov
CY030116

52.98% cov

Alignment Length
1,218 bp
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Public DB hit
GI:209486664
FJ375218

Hit length
2,291 bp

E Value
0E0

BLAST Score
2,187.6 bits

Similarity

99.18%

Coverage

97.82%

Alignment (schematic)

SEQ ID NO 5

97.82% cov
FJ375218

52.99% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193805007
CY032960

Hit length
2,301 bp

E Value
0E0

BLAST Score
2,187.6 bits

Similarity

99.02%

Coverage

98.31%

Alignment (schematic)

SEQ ID NO 5

98.31% cov
CY032960

53.02% cov

Alignment Length
1,220 bp
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481164
CY030188

Hit length
2,306 bp

E Value
0E0

BLAST Score
2,185.7 bits

Similarity

98.86%

Coverage

98.71%

Alignment (schematic)

SEQ ID NO 5

98.71% cov
CY030188

53.12% cov

Alignment Length
1,225 bp
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504028
CY031545

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,183.9 bits

Similarity

99.09%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 5

97.9% cov
CY031545

52.92% cov

Alignment Length
1,215 bp
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835076
CY030758

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,174.6 bits

Similarity

98.85%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 5

98.23% cov
CY030758

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423080
CY032332

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,172.8 bits

Similarity

98.93%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 5

97.9% cov
CY032332

52.92% cov

Alignment Length
1,215 bp
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Public DB hit
GI:60547100
AY855338

Hit length
2,341 bp

E Value
0E0

BLAST Score
2,165.4 bits

Similarity

98.15%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
AY855338

53.01% cov

Alignment Length
1,241 bp
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Public DB hit
GI:189230819
CY032420

Hit length
2,297 bp

E Value
0E0

BLAST Score
2,163.5 bits

Similarity

98.77%

Coverage

97.99%

Alignment (schematic)

SEQ ID NO 5

97.99% cov
CY032420

52.94% cov

Alignment Length
1,216 bp
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Public DB hit
GI:189423061
CY032324
1 of 2 hits reported for Influenza A virus (A/equine/Sussex/1/1989(H3N8)).

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,161.7 bits

Similarity

98.77%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 5

97.9% cov
CY032324

52.92% cov

Alignment Length
1,215 bp
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Public DB hit
GI:168480955
CY030100

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,161.7 bits

Similarity

98.69%

Coverage

98.15%

Alignment (schematic)

SEQ ID NO 5

98.15% cov
CY030100

52.98% cov

Alignment Length
1,218 bp

Occurrence

28 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(2 referenced in claims)
in 28 documents

Tools

PatSeq Finder

SEQ ID NO

Length

404

Type

peptide

Locations

Claims, Detailed Description, Summary

Declared organism:
Equine influenza virus H3N8

Determined organism:

Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:168481127
ACA24666

Hit length
759 aa

E Value
0E0

BLAST Score
840.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA24666

53.23% cov

Alignment Length
404 aa

CIGAR string
404M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423081
ACD97446

Hit length
759 aa

E Value
0E0

BLAST Score
840.5 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD97446

53.23% cov

Alignment Length
404 aa

CIGAR string
404M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Public DB hit
GI:189230649
ACD85318

Hit length
759 aa

E Value
0E0

BLAST Score
840.5 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD85318

53.23% cov

Alignment Length
404 aa

CIGAR string
404M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/3/1986(H3N8))
Influenza A virus (A/equine/Kentucky/3/1986(H3N8))
Public DB hit
GI:189230421
ACD85186

Hit length
759 aa

E Value
0E0

BLAST Score
840.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD85186

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Public DB hit
GI:189423062
ACD97435

Hit length
759 aa

E Value
0E0

BLAST Score
840.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD97435

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835077
ACA96810

Hit length
759 aa

E Value
0E0

BLAST Score
840.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA96810

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Public DB hit
GI:168480956
ACA24567

Hit length
759 aa

E Value
0E0

BLAST Score
840.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA24567

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433621
ABM21948

Hit length
759 aa

E Value
0E0

BLAST Score
840.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ABM21948

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Austria/421/1992(H3N8))
Influenza A virus (A/equine/Austria/421/1992(H3N8))
Public DB hit
GI:189230668
ACD85329

Hit length
759 aa

E Value
0E0

BLAST Score
840.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD85329

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Newmarket/2/1993(H3N8))
Influenza A virus (A/equine/Newmarket/2/1993(H3N8))
Public DB hit
GI:209486648
ACI48785

Hit length
759 aa

E Value
0E0

BLAST Score
839.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACI48785

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481070
ACA24633

Hit length
759 aa

E Value
0E0

BLAST Score
839.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA24633

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193805008
ACF22147

Hit length
759 aa

E Value
0E0

BLAST Score
839 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACF22147

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Italy/1062/1991(H3N8))
Influenza A virus (A/equine/Italy/1062/1991(H3N8))
Public DB hit
GI:189230725
ACD85362

Hit length
759 aa

E Value
0E0

BLAST Score
839 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD85362

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/magnificent_genius1/1981(H3N8))
Influenza A virus (A/equine/Kentucky/magnificent_genius1/1981(H3N8))
Public DB hit
GI:166079712
ABY81590

Hit length
759 aa

E Value
0E0

BLAST Score
839 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ABY81590

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480994
ACA24589

Hit length
759 aa

E Value
0E0

BLAST Score
839 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA24589

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504029
ACD56145

Hit length
759 aa

E Value
0E0

BLAST Score
839 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD56145

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168481013
ACA24600

Hit length
759 aa

E Value
0E0

BLAST Score
839 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA24600

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481165
ACA24688

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA24688

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Rome/5/1991(H3N8))
Influenza A virus (A/equine/Rome/5/1991(H3N8))
Public DB hit
GI:189230706
ACD85351

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD85351

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Switzerland/173/1993(H3N8))
Influenza A virus (A/equine/Switzerland/173/1993(H3N8))
Public DB hit
GI:189230687
ACD85340

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD85340

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kascakew/1/1978(H3N8))
Influenza A virus (A/equine/Kascakew/1/1978(H3N8))
Public DB hit
GI:194304592
ACF41712

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACF41712

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Santa Fe/1/1985(H3N8))
Influenza A virus (A/equine/Santa Fe/1/1985(H3N8))
Public DB hit
GI:189230611
ACD85296

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACD85296

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481146
ACA24677

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA24677

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481089
ACA24644

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA24644

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481051
ACA24622

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
ACA24622

53.23% cov

Alignment Length
404 aa

Occurrence

32 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 28 documents

Tools

PatSeq Finder

SEQ ID NO

Length

1,214

Type

nucleotide

Locations

Detailed Description, Summary

Declared organism:
Equine influenza virus H3N8

Determined organism:

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481145
CY030180

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,237.4 bits

Similarity

99.92%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030180

52.87% cov

Alignment Length
1,214 bp

CIGAR string
1129MN84M mismatches: 1 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481088
CY030156

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,231.9 bits

Similarity

99.84%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030156

52.81% cov

Alignment Length
1,214 bp

CIGAR string
1073MN54MN85M mismatches: 2 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481069
CY030148

Hit length
2,305 bp

E Value
0E0

BLAST Score
2,215.3 bits

Similarity

99.59%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030148

52.67% cov

Alignment Length
1,214 bp

CIGAR string
437MN209MN65MN359MN64MN75M mismatches: 5 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481107
CY030164

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,204.2 bits

Similarity

99.42%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030164

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433620
CY018876

Hit length
2,304 bp

E Value
0E0

BLAST Score
2,204.2 bits

Similarity

99.42%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY018876

52.69% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Public DB hit
GI:269820829
GU052343

Hit length
2,316 bp

E Value
0E0

BLAST Score
2,187.6 bits

Similarity

99.18%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
GU052343

52.42% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Public DB hit
GI:209486664
FJ375218

Hit length
2,291 bp

E Value
0E0

BLAST Score
2,187.6 bits

Similarity

99.18%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
FJ375218

52.99% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:168481126
CY030172

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,187.6 bits

Similarity

99.18%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030172

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481050
CY030140

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,187.6 bits

Similarity

99.18%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030140

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:168480974
CY030108

Hit length
2,304 bp

E Value
0E0

BLAST Score
2,187.6 bits

Similarity

99.18%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030108

52.69% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504028
CY031545

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY031545

52.87% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481031
CY030132

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030132

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168481012
CY030124

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030124

52.81% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480993
CY030116

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030116

52.81% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193805007
CY032960

Hit length
2,301 bp

E Value
0E0

BLAST Score
2,176.5 bits

Similarity

99.01%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY032960

52.76% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/2/1986(H3N8))
Influenza A virus (A/equine/Kentucky/2/1986(H3N8))
Public DB hit
GI:324063
M73526
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/2/1986(H3N8)).

Hit length
2,341 bp

E Value
0E0

BLAST Score
2,176.5 bits

Similarity

99.01%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
M73526

51.86% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423080
CY032332

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,170.9 bits

Similarity

98.93%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY032332

52.87% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835076
CY030758

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,165.4 bits

Similarity

98.85%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030758

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481164
CY030188

Hit length
2,306 bp

E Value
0E0

BLAST Score
2,165.4 bits

Similarity

98.85%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030188

52.65% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Public DB hit
GI:238564008
FJ375220
1 of 2 hits reported for Influenza A virus (A/equine/Sussex/1/1989(H3N8)).

Hit length
2,280 bp

E Value
0E0

BLAST Score
2,159.9 bits

Similarity

98.76%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
FJ375220

53.25% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Public DB hit
GI:189230819
CY032420

Hit length
2,297 bp

E Value
0E0

BLAST Score
2,159.9 bits

Similarity

98.76%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY032420

52.85% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Italy/824/1991(H3N8))
Influenza A virus (A/equine/Italy/824/1991(H3N8))
Public DB hit
GI:189230629
CY032340

Hit length
2,297 bp

E Value
0E0

BLAST Score
2,154.3 bits

Similarity

98.68%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY032340

52.85% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Public DB hit
GI:168480955
CY030100

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,154.3 bits

Similarity

98.68%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CY030100

52.81% cov

Alignment Length
1,214 bp

Occurrence

28 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 28 documents

Tools

PatSeq Finder

SEQ ID NO

Length

1,241

Type

nucleotide

Locations

Detailed Description, Summary

Declared organism:
Equine influenza virus H3N8

Determined organism:

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481145
CY030180

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,233.7 bits

Similarity

99.84%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 8

97.9% cov
CY030180

52.92% cov

Alignment Length
1,215 bp

CIGAR string
26H343MN786MN84M mismatches: 2 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481088
CY030156

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,233.7 bits

Similarity

99.75%

Coverage

98.15%

Alignment (schematic)

SEQ ID NO 8

98.15% cov
CY030156

52.98% cov

Alignment Length
1,218 bp

CIGAR string
23H346MN730MN54MN85M mismatches: 3 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481069
CY030148

Hit length
2,305 bp

E Value
0E0

BLAST Score
2,228.2 bits

Similarity

99.51%

Coverage

98.63%

Alignment (schematic)

SEQ ID NO 8

98.63% cov
CY030148

53.1% cov

Alignment Length
1,224 bp

CIGAR string
17H352MN94MN209MN65MN359MN64MN75M mismatches: 6 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/2/1986(H3N8))
Influenza A virus (A/equine/Kentucky/2/1986(H3N8))
Public DB hit
GI:324063
M73526
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/2/1986(H3N8)).

Hit length
2,341 bp

E Value
0E0

BLAST Score
2,220.8 bits

Similarity

98.95%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
M73526

53.01% cov

Alignment Length
1,241 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433620
CY018876

Hit length
2,304 bp

E Value
0E0

BLAST Score
2,215.3 bits

Similarity

99.27%

Coverage

98.79%

Alignment (schematic)

SEQ ID NO 8

98.79% cov
CY018876

53.21% cov

Alignment Length
1,226 bp
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Public DB hit
GI:269820829
GU052343

Hit length
2,316 bp

E Value
0E0

BLAST Score
2,209.7 bits

Similarity

99.1%

Coverage

99.03%

Alignment (schematic)

SEQ ID NO 8

99.03% cov
GU052343

53.07% cov

Alignment Length
1,229 bp
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481107
CY030164

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,207.9 bits

Similarity

99.34%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 8

98.23% cov
CY030164

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:168480974
CY030108

Hit length
2,304 bp

E Value
0E0

BLAST Score
2,198.6 bits

Similarity

99.1%

Coverage

98.55%

Alignment (schematic)

SEQ ID NO 8

98.55% cov
CY030108

53.08% cov

Alignment Length
1,223 bp
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:168481126
CY030172

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,191.2 bits

Similarity

99.1%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 8

98.23% cov
CY030172

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481050
CY030140

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,191.2 bits

Similarity

99.1%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 8

98.23% cov
CY030140

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481031
CY030132

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,185.7 bits

Similarity

99.02%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 8

98.23% cov
CY030132

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168481012
CY030124

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,183.9 bits

Similarity

99.01%

Coverage

98.15%

Alignment (schematic)

SEQ ID NO 8

98.15% cov
CY030124

52.98% cov

Alignment Length
1,218 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480993
CY030116

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,183.9 bits

Similarity

99.01%

Coverage

98.15%

Alignment (schematic)

SEQ ID NO 8

98.15% cov
CY030116

52.98% cov

Alignment Length
1,218 bp
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Public DB hit
GI:209486664
FJ375218

Hit length
2,291 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

97.82%

Alignment (schematic)

SEQ ID NO 8

97.82% cov
FJ375218

52.99% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193805007
CY032960

Hit length
2,301 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

98.93%

Coverage

98.31%

Alignment (schematic)

SEQ ID NO 8

98.31% cov
CY032960

53.02% cov

Alignment Length
1,220 bp
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481164
CY030188

Hit length
2,306 bp

E Value
0E0

BLAST Score
2,180.2 bits

Similarity

98.78%

Coverage

98.71%

Alignment (schematic)

SEQ ID NO 8

98.71% cov
CY030188

53.12% cov

Alignment Length
1,225 bp
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504028
CY031545

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,178.3 bits

Similarity

99.01%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 8

97.9% cov
CY031545

52.92% cov

Alignment Length
1,215 bp
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835076
CY030758

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,169.1 bits

Similarity

98.77%

Coverage

98.23%

Alignment (schematic)

SEQ ID NO 8

98.23% cov
CY030758

53% cov

Alignment Length
1,219 bp
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423080
CY032332

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,167.2 bits

Similarity

98.85%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 8

97.9% cov
CY032332

52.92% cov

Alignment Length
1,215 bp
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Public DB hit
GI:60547100
AY855338

Hit length
2,341 bp

E Value
0E0

BLAST Score
2,159.9 bits

Similarity

98.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
AY855338

53.01% cov

Alignment Length
1,241 bp
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Public DB hit
GI:189230819
CY032420

Hit length
2,297 bp

E Value
0E0

BLAST Score
2,158 bits

Similarity

98.68%

Coverage

97.99%

Alignment (schematic)

SEQ ID NO 8

97.99% cov
CY032420

52.94% cov

Alignment Length
1,216 bp
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Public DB hit
GI:189423061
CY032324
1 of 2 hits reported for Influenza A virus (A/equine/Sussex/1/1989(H3N8)).

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,156.2 bits

Similarity

98.68%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 8

97.9% cov
CY032324

52.92% cov

Alignment Length
1,215 bp
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Public DB hit
GI:168480955
CY030100

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,156.2 bits

Similarity

98.6%

Coverage

98.15%

Alignment (schematic)

SEQ ID NO 8

98.15% cov
CY030100

52.98% cov

Alignment Length
1,218 bp

Occurrence

28 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 28 documents

Tools

PatSeq Finder

SEQ ID NO

Length

404

Type

peptide

Locations

Claims, Detailed Description, Summary

Declared organism:
Equine influenza virus H3N8

Determined organism:

Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433621
ABM21948

Hit length
759 aa

E Value
0E0

BLAST Score
839 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ABM21948

53.23% cov

Alignment Length
404 aa

CIGAR string
114MN289M mismatches: 1 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/3/1986(H3N8))
Influenza A virus (A/equine/Kentucky/3/1986(H3N8))
Public DB hit
GI:189230421
ACD85186

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACD85186

53.23% cov

Alignment Length
404 aa

CIGAR string
114MN289M mismatches: 1 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:168481127
ACA24666

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA24666

53.23% cov

Alignment Length
404 aa

CIGAR string
114MN289M mismatches: 1 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835077
ACA96810

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA96810

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Public DB hit
GI:168480956
ACA24567

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA24567

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423081
ACD97446

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACD97446

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Public DB hit
GI:189423062
ACD97435

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACD97435

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Public DB hit
GI:189230649
ACD85318

Hit length
759 aa

E Value
0E0

BLAST Score
838.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACD85318

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Austria/421/1992(H3N8))
Influenza A virus (A/equine/Austria/421/1992(H3N8))
Public DB hit
GI:189230668
ACD85329

Hit length
759 aa

E Value
0E0

BLAST Score
838.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACD85329

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Newmarket/2/1993(H3N8))
Influenza A virus (A/equine/Newmarket/2/1993(H3N8))
Public DB hit
GI:209486648
ACI48785

Hit length
759 aa

E Value
0E0

BLAST Score
837.4 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACI48785

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480994
ACA24589

Hit length
759 aa

E Value
0E0

BLAST Score
837.4 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA24589

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481070
ACA24633

Hit length
759 aa

E Value
0E0

BLAST Score
837 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA24633

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193805008
ACF22147

Hit length
759 aa

E Value
0E0

BLAST Score
837 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACF22147

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504029
ACD56145

Hit length
759 aa

E Value
0E0

BLAST Score
837 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACD56145

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168481013
ACA24600

Hit length
759 aa

E Value
0E0

BLAST Score
837 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA24600

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481165
ACA24688

Hit length
759 aa

E Value
0E0

BLAST Score
837 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA24688

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Italy/1062/1991(H3N8))
Influenza A virus (A/equine/Italy/1062/1991(H3N8))
Public DB hit
GI:189230725
ACD85362

Hit length
759 aa

E Value
0E0

BLAST Score
837 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACD85362

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kascakew/1/1978(H3N8))
Influenza A virus (A/equine/Kascakew/1/1978(H3N8))
Public DB hit
GI:194304592
ACF41712

Hit length
759 aa

E Value
0E0

BLAST Score
837 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACF41712

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481051
ACA24622

Hit length
759 aa

E Value
0E0

BLAST Score
836.6 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA24622

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Rome/5/1991(H3N8))
Influenza A virus (A/equine/Rome/5/1991(H3N8))
Public DB hit
GI:189230706
ACD85351

Hit length
759 aa

E Value
0E0

BLAST Score
836.6 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACD85351

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Santa Fe/1/1985(H3N8))
Influenza A virus (A/equine/Santa Fe/1/1985(H3N8))
Public DB hit
GI:189230611
ACD85296

Hit length
759 aa

E Value
0E0

BLAST Score
836.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACD85296

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/magnificent_genius1/1981(H3N8))
Influenza A virus (A/equine/Kentucky/magnificent_genius1/1981(H3N8))
Public DB hit
GI:166079712
ABY81590

Hit length
759 aa

E Value
0E0

BLAST Score
836.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ABY81590

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/2/1980(H3N8))
Influenza A virus (A/equine/Kentucky/2/1980(H3N8))
Public DB hit
GI:193804970
ACF22125

Hit length
759 aa

E Value
0E0

BLAST Score
836.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACF22125

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481146
ACA24677

Hit length
759 aa

E Value
0E0

BLAST Score
836.3 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA24677

53.23% cov

Alignment Length
404 aa
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481089
ACA24644

Hit length
759 aa

E Value
0E0

BLAST Score
836.3 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
ACA24644

53.23% cov

Alignment Length
404 aa

Occurrence

32 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 28 documents

Tools

PatSeq Finder

SEQ ID NO

Length

1,214

Type

nucleotide

Locations

Detailed Description, Summary

Declared organism:
Equine influenza virus H3N8

Determined organism:

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481145
CY030180

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,231.9 bits

Similarity

99.84%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030180

52.87% cov

Alignment Length
1,214 bp

CIGAR string
342MN786MN84M mismatches: 2 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481088
CY030156

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,226.3 bits

Similarity

99.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030156

52.81% cov

Alignment Length
1,214 bp

CIGAR string
342MN730MN54MN85M mismatches: 3 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481069
CY030148

Hit length
2,305 bp

E Value
0E0

BLAST Score
2,209.7 bits

Similarity

99.51%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030148

52.67% cov

Alignment Length
1,214 bp

CIGAR string
342MN94MN209MN65MN359MN64MN75M mismatches: 6 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481107
CY030164

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,198.6 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030164

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433620
CY018876

Hit length
2,304 bp

E Value
0E0

BLAST Score
2,198.6 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY018876

52.69% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Public DB hit
GI:269820829
GU052343

Hit length
2,316 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
GU052343

52.42% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Public DB hit
GI:209486664
FJ375218

Hit length
2,291 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
FJ375218

52.99% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:168481126
CY030172

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030172

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481050
CY030140

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030140

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:168480974
CY030108

Hit length
2,304 bp

E Value
0E0

BLAST Score
2,182 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030108

52.69% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504028
CY031545

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,176.5 bits

Similarity

99.01%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY031545

52.87% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481031
CY030132

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,176.5 bits

Similarity

99.01%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030132

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168481012
CY030124

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,176.5 bits

Similarity

99.01%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030124

52.81% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480993
CY030116

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,176.5 bits

Similarity

99.01%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030116

52.81% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193805007
CY032960

Hit length
2,301 bp

E Value
0E0

BLAST Score
2,170.9 bits

Similarity

98.93%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY032960

52.76% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/2/1986(H3N8))
Influenza A virus (A/equine/Kentucky/2/1986(H3N8))
Public DB hit
GI:324063
M73526
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/2/1986(H3N8)).

Hit length
2,341 bp

E Value
0E0

BLAST Score
2,170.9 bits

Similarity

98.93%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
M73526

51.86% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423080
CY032332

Hit length
2,296 bp

E Value
0E0

BLAST Score
2,165.4 bits

Similarity

98.85%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY032332

52.87% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835076
CY030758

Hit length
2,300 bp

E Value
0E0

BLAST Score
2,159.9 bits

Similarity

98.76%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030758

52.78% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481164
CY030188

Hit length
2,306 bp

E Value
0E0

BLAST Score
2,159.9 bits

Similarity

98.76%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030188

52.65% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Public DB hit
GI:238564008
FJ375220
1 of 2 hits reported for Influenza A virus (A/equine/Sussex/1/1989(H3N8)).

Hit length
2,280 bp

E Value
0E0

BLAST Score
2,154.3 bits

Similarity

98.68%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
FJ375220

53.25% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Public DB hit
GI:189230819
CY032420

Hit length
2,297 bp

E Value
0E0

BLAST Score
2,154.3 bits

Similarity

98.68%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY032420

52.85% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Italy/824/1991(H3N8))
Influenza A virus (A/equine/Italy/824/1991(H3N8))
Public DB hit
GI:189230629
CY032340

Hit length
2,297 bp

E Value
0E0

BLAST Score
2,148.8 bits

Similarity

98.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY032340

52.85% cov

Alignment Length
1,214 bp
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Public DB hit
GI:168480955
CY030100

Hit length
2,299 bp

E Value
0E0

BLAST Score
2,148.8 bits

Similarity

98.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
CY030100

52.81% cov

Alignment Length
1,214 bp

Occurrence

28 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 28 documents

Tools

PatSeq Finder

Search for Biological Sequences disclosed in Patents

130 sequences found in this patent (in total)

Displaying 1 - 10 of 130 sequences

Caenorhabditis remanei

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Xenopus (Silurana) tropicalis

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Drosophila sechellia

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Culex quinquefasciatus

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Cryptosporidium hominis TU502

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

uncultured bacterium

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Cloning vector pAW8ENdeI-C3HA

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Cloning vector pAW8ENdeI-CTAP

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Cloning vector pAW8ENdeI-cyEGFP

Public DB hit

Hit length

E Value