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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
12 sequences found in this patent (in total)

Displaying 1 - 10 of 12 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,721
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:318067964
      NM_183399
      1 of 15 hits reported for Homo sapiens.
    • Hit length
      4,007 bp
    • E Value
      0E0
    • BLAST Score
      3,049.9 bits
    • Similarity
      98.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_183399
      42.45% cov
    • Alignment Length
      1,721 bp
    • CIGAR string
      1484M9DM5D2MDMDM4D212M mismatches: 0 - insertions: 0 - deletions: 20
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332822199
      XM_003310878
      1 of 7 hits reported for Pan troglodytes.
    • Hit length
      4,046 bp
    • E Value
      0E0
    • BLAST Score
      3,011.2 bits
    • Similarity
      98.43%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_003310878
      42.04% cov
    • Alignment Length
      1,721 bp
    • CIGAR string
      700MN76MN304MN56MN143MN200M9DM5D2MDMDM4D102MN47MN61M mismatches: 7 - insertions: 0 - deletions: 20
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
474
Type
peptide
Locations
Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4757762
      NP_004281
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      978.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_004281
      100% cov
    • Alignment Length
      474 aa
    • CIGAR string
      474M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:55625172
      XP_527056
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      977.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_527056
      100% cov
    • Alignment Length
      474 aa
    • CIGAR string
      220MN253M mismatches: 1 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234798
      XP_003266589
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      973.8 bits
    • Similarity
      99.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003266589
      100% cov
    • Alignment Length
      474 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109079101
      XP_001095132
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      972.2 bits
    • Similarity
      99.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001095132
      100% cov
    • Alignment Length
      474 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197097758
      NP_001125890
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      968 bits
    • Similarity
      99.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001125890
      100% cov
    • Alignment Length
      474 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296193051
      XP_002744334
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      932.6 bits
    • Similarity
      99.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002744334
      100% cov
    • Alignment Length
      474 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301753471
      XP_002912583
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      926 bits
    • Similarity
      98.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002912583
      100% cov
    • Alignment Length
      474 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:57042714
      XP_535221
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      921 bits
    • Similarity
      98.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_535221
      100% cov
    • Alignment Length
      474 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:125630705
      NP_001075009
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      918.7 bits
    • Similarity
      98.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001075009
      100% cov
    • Alignment Length
      474 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291387532
      XP_002710317
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      907.5 bits
    • Similarity
      97.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002710317
      100% cov
    • Alignment Length
      474 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311250396
      XP_003124056
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      902.1 bits
    • Similarity
      97.26%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003124056
      100% cov
    • Alignment Length
      474 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194219770
      XP_001504014
    • Hit length
      474 aa
    • E Value
      0E0
    • BLAST Score
      897.9 bits
    • Similarity
      97.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001504014
      100% cov
    • Alignment Length
      474 aa
Occurrence
176 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,335
Type
nucleotide
Locations
Claims, Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4557193
      AF116343
      1 of 21 hits reported for Homo sapiens.
    • Hit length
      1,335 bp
    • E Value
      0E0
    • BLAST Score
      2,433.2 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF116343
      100% cov
    • Alignment Length
      1,337 bp
    • CIGAR string
      74MD3MDMN2M2I1080MN171M mismatches: 2 - insertions: 2 - deletions: 2
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30585036
      BT008099
      1 of 4 hits reported for synthetic construct.
    • Hit length
      1,335 bp
    • E Value
      0E0
    • BLAST Score
      2,390.7 bits
    • Similarity
      99.03%
    • Coverage
      99.85%
    • Alignment (schematic)

      SEQ ID NO 3
      99.85% cov
      BT008099
      99.85% cov
    • Alignment Length
      1,337 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
444
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4557194
      AAD22552
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      444 aa
    • E Value
      0E0
    • BLAST Score
      885.9 bits
    • Similarity
      99.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAD22552
      100% cov
    • Alignment Length
      444 aa
    • CIGAR string
      25M3N359MN56M mismatches: 4 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30585037
      AAP36791
    • Hit length
      445 aa
    • E Value
      0E0
    • BLAST Score
      880.6 bits
    • Similarity
      98.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAP36791
      99.78% cov
    • Alignment Length
      444 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109128341
      XP_001113103
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      461 aa
    • E Value
      0E0
    • BLAST Score
      797.7 bits
    • Similarity
      97.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001113103
      96.31% cov
    • Alignment Length
      444 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262942
      XP_003280517
    • Hit length
      461 aa
    • E Value
      0E0
    • BLAST Score
      793.9 bits
    • Similarity
      97.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003280517
      96.31% cov
    • Alignment Length
      444 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297715415
      XP_002834074
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      461 aa
    • E Value
      0E0
    • BLAST Score
      792 bits
    • Similarity
      97.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002834074
      96.31% cov
    • Alignment Length
      444 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296233358
      XP_002761978
    • Hit length
      461 aa
    • E Value
      0E0
    • BLAST Score
      787.3 bits
    • Similarity
      96.17%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002761978
      96.31% cov
    • Alignment Length
      444 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:150416154
      Q3MHZ4
    • Hit length
      456 aa
    • E Value
      0E0
    • BLAST Score
      771.9 bits
    • Similarity
      93.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      Q3MHZ4
      96.27% cov
    • Alignment Length
      444 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:150416156
      Q62219
      1 of 2 hits reported for Mus musculus.
    • Hit length
      461 aa
    • E Value
      0E0
    • BLAST Score
      771.9 bits
    • Similarity
      91.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      Q62219
      96.31% cov
    • Alignment Length
      444 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73958298
      XP_547052
    • Hit length
      461 aa
    • E Value
      0E0
    • BLAST Score
      771.5 bits
    • Similarity
      93.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_547052
      96.31% cov
    • Alignment Length
      444 aa
Occurrence
9 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
1,566
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:2967847
      AF052578
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      1,566 bp
    • E Value
      0E0
    • BLAST Score
      2,893 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AF052578
      100% cov
    • Alignment Length
      1,566 bp
    • CIGAR string
      1566M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332840829
      XM_509522
    • Hit length
      1,779 bp
    • E Value
      0E0
    • BLAST Score
      2,732.3 bits
    • Similarity
      98.28%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 5
      99.68% cov
      XM_509522
      87.63% cov
    • Alignment Length
      1,568 bp
    • CIGAR string
      2H8MN558MN221MN18MDM2D39MD3MI30MI3MI100MI104MN148MN11MN21MN73MNI2MD3MI65M3D15MN18MD42MN19MI14MN25M3H mismatches: 11 - insertions: 7 - deletions: 9
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332254105
      XM_003276124
    • Hit length
      1,806 bp
    • E Value
      0E0
    • BLAST Score
      2,695.4 bits
    • Similarity
      97.77%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 5
      99.68% cov
      XM_003276124
      86.82% cov
    • Alignment Length
      1,570 bp
    • CIGAR string
      2H135MN33MN61MN170MN98MN14MN59MN77MN134MN61MN33MI3MI23MN13MN62MI122MN43MN111MN19MN7MDMD39MN22M3I43MN9MN26MN9MN51MN19MI14MN5M2I14MN5M3H mismatches: 24 - insertions: 9 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:209447014
      NM_001135810
      1 of 3 hits reported for Pongo abelii.
    • Hit length
      2,122 bp
    • E Value
      0E0
    • BLAST Score
      2,686.1 bits
    • Similarity
      97.77%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 5
      99.68% cov
      NM_001135810
      73.42% cov
    • Alignment Length
      1,568 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:67971207
      AB169865
    • Hit length
      2,480 bp
    • E Value
      0E0
    • BLAST Score
      2,507 bits
    • Similarity
      95.62%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 5
      99.68% cov
      AB169865
      63.19% cov
    • Alignment Length
      1,577 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297263889
      XM_002798843
      1 of 4 hits reported for Macaca mulatta.
    • Hit length
      2,460 bp
    • E Value
      0E0
    • BLAST Score
      2,483 bits
    • Similarity
      95.53%
    • Coverage
      99.04%
    • Alignment (schematic)

      SEQ ID NO 5
      99.04% cov
      XM_002798843
      63.29% cov
    • Alignment Length
      1,567 bp
Occurrence
14 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
216
Type
peptide
Locations
Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109099257
      XP_001104422
    • Hit length
      236 aa
    • E Value
      3.17E-125
    • BLAST Score
      452.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001104422
      91.53% cov
    • Alignment Length
      216 aa
    • CIGAR string
      216M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30584985
      AAP36765
      1 of 2 hits reported for synthetic construct.
    • Hit length
      217 aa
    • E Value
      5.27E-125
    • BLAST Score
      451.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AAP36765
      99.54% cov
    • Alignment Length
      216 aa
    • CIGAR string
      216M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:5453555
      NP_006316
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      216 aa
    • E Value
      5.92E-125
    • BLAST Score
      451.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_006316
      100% cov
    • Alignment Length
      216 aa
    • CIGAR string
      216M mismatches: 0 - insertions: 0 - deletions: 0
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:5542356
      1QG4_A
      1 of 4 hits reported for Canis lupus familiaris.
    • Hit length
      216 aa
    • E Value
      1.45E-124
    • BLAST Score
      449.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      1QG4_A
      100% cov
    • Alignment Length
      216 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:74208259
      BAE26338
      1 of 2 hits reported for Mus musculus.
    • Hit length
      216 aa
    • E Value
      4.04E-124
    • BLAST Score
      448.4 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      BAE26338
      100% cov
    • Alignment Length
      216 aa
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:45383966
      NP_990589
    • Hit length
      216 aa
    • E Value
      9.78E-124
    • BLAST Score
      447.2 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_990589
      100% cov
    • Alignment Length
      216 aa
  • Rana catesbeiana

    Rana catesbeiana

    • Public DB hit
      GI:226371966
      ACO51608
    • Hit length
      216 aa
    • E Value
      3.72E-123
    • BLAST Score
      445.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ACO51608
      100% cov
    • Alignment Length
      216 aa
  • Taeniopygia guttata

    Taeniopygia guttata

    • Public DB hit
      GI:197127596
      ACH44094
    • Hit length
      216 aa
    • E Value
      5.36E-123
    • BLAST Score
      444.9 bits
    • Similarity
      99.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ACH44094
      100% cov
    • Alignment Length
      216 aa
  • Xenopus laevis

    Xenopus laevis

    • Public DB hit
      GI:205360882
      NP_001128547
    • Hit length
      216 aa
    • E Value
      1.57E-122
    • BLAST Score
      443.4 bits
    • Similarity
      98.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_001128547
      100% cov
    • Alignment Length
      216 aa
  • Xenopus (Silurana) tropicalis

    Xenopus (Silurana) tropicalis

    • Public DB hit
      GI:89266738
      CAJ83878
    • Hit length
      216 aa
    • E Value
      1.75E-122
    • BLAST Score
      443 bits
    • Similarity
      98.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CAJ83878
      100% cov
    • Alignment Length
      216 aa
  • Anolis carolinensis

    Anolis carolinensis

    • Public DB hit
      GI:327283181
      XP_003226320
    • Hit length
      217 aa
    • E Value
      2.47E-122
    • BLAST Score
      442.6 bits
    • Similarity
      99.07%
    • Coverage
      99.54%
    • Alignment (schematic)

      SEQ ID NO 6
      99.54% cov
      XP_003226320
      99.08% cov
    • Alignment Length
      215 aa
Occurrence
222 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
4,839
Type
nucleotide
Locations
Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:793994
      L41870
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      4,839 bp
    • E Value
      0E0
    • BLAST Score
      8,937.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      L41870
      100% cov
    • Alignment Length
      4,839 bp
    • CIGAR string
      4839M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332841284
      XM_509777
    • Hit length
      5,067 bp
    • E Value
      0E0
    • BLAST Score
      8,839.2 bits
    • Similarity
      99.63%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_509777
      95.56% cov
    • Alignment Length
      4,843 bp
    • CIGAR string
      70MI243MN519MN406MN1025MN982MN75MD82MN10MN117MN29M2I52MN772MN252MI102MN41MN3MN45M mismatches: 13 - insertions: 4 - deletions: 1
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332241898
      XM_003270074
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      4,972 bp
    • E Value
      0E0
    • BLAST Score
      8,224.3 bits
    • Similarity
      98.79%
    • Coverage
      95.56%
    • Alignment (schematic)

      SEQ ID NO 7
      95.56% cov
      XM_003270074
      92.88% cov
    • Alignment Length
      4,626 bp
    • CIGAR string
      215H98MN162MN82MN185MN86M2N249MN3MN11MN175MN171MN129MN22MN12MN118MN14MN10MN78MN54MN17MN251MN7MN14MN8MN311MN146MN273MN20M2D19MN101MN82MD94MN158MN2MN2MN29MN87MN86MIMD19MN84MN152MN65MDM2D356MD3MI82MNMN43M2N11MN7MN11MN319MN49M mismatches: 46 - insertions: 2 - deletions: 8
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297274429
      XM_002800747
      1 of 3 hits reported for Macaca mulatta.
    • Hit length
      4,871 bp
    • E Value
      0E0
    • BLAST Score
      8,194.7 bits
    • Similarity
      97.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002800747
      98.99% cov
    • Alignment Length
      4,844 bp
    • CIGAR string
      47MN22MI11MDMI2MN10MN27MN3MN41MN10MN2MN29MN35MN17MN23MN20MN110MN14MN36MNMN65MN11MN32MN108MN133M2N70MN178MN3MN11MN59MN47MN32MN110MN26MN68MN155MN101MN26MN50MN108MN103MN134MN14MN15MN7MN23MN2MN110MN191MN20MN83MN47MN38MN56MN65MN38MN93MN25MNMN14MN44MN18MN72MI31MN18MN70MN32MN2MNMN40MN26MN8MDM3D30MN8MN14MN108MN40MN2MN21MN20MIMD37MN71MN26MN3MN11MN43MN25MN34MN61MN3MN27MN46M4D30MN214MN10M3D2M5DM4D91MN6MN45MN13MN5MN10MNI70MN54MN64MN81MN25MN10MN7MNMN3MN34MN10M mismatches: 104 - insertions: 5 - deletions: 22
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194221892
      XM_001490561
    • Hit length
      4,522 bp
    • E Value
      0E0
    • BLAST Score
      5,927 bits
    • Similarity
      90.5%
    • Coverage
      93.2%
    • Alignment (schematic)

      SEQ ID NO 7
      93.2% cov
      XM_001490561
      99.91% cov
    • Alignment Length
      4,578 bp
Occurrence
35 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
928
Type
peptide
Locations
Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:108773787
      NP_000312
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      928 aa
    • E Value
      0E0
    • BLAST Score
      1,920.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_000312
      100% cov
    • Alignment Length
      928 aa
    • CIGAR string
      928M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332841285
      XP_509777
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      928 aa
    • E Value
      0E0
    • BLAST Score
      1,918.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_509777
      100% cov
    • Alignment Length
      928 aa
    • CIGAR string
      232MN695M mismatches: 1 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168275724
      BAG10582
    • Hit length
      928 aa
    • E Value
      0E0
    • BLAST Score
      1,917.5 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      BAG10582
      100% cov
    • Alignment Length
      928 aa
    • CIGAR string
      85MN842M mismatches: 1 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297274430
      XP_002800793
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      928 aa
    • E Value
      0E0
    • BLAST Score
      1,908.6 bits
    • Similarity
      99.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002800793
      100% cov
    • Alignment Length
      928 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332241899
      XP_003270122
    • Hit length
      907 aa
    • E Value
      0E0
    • BLAST Score
      1,855.1 bits
    • Similarity
      99.34%
    • Coverage
      97.63%
    • Alignment (schematic)

      SEQ ID NO 8
      97.63% cov
      XP_003270122
      99.89% cov
    • Alignment Length
      906 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301767484
      XP_002919165
    • Hit length
      925 aa
    • E Value
      0E0
    • BLAST Score
      1,779.6 bits
    • Similarity
      96.91%
    • Coverage
      97.63%
    • Alignment (schematic)

      SEQ ID NO 8
      97.63% cov
      XP_002919165
      97.95% cov
    • Alignment Length
      906 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291408942
      XP_002720769
    • Hit length
      927 aa
    • E Value
      0E0
    • BLAST Score
      1,754.2 bits
    • Similarity
      96.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002720769
      100% cov
    • Alignment Length
      928 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:296481832
      DAA23947
      1 of 2 hits reported for Bos taurus.
    • Hit length
      928 aa
    • E Value
      0E0
    • BLAST Score
      1,744.2 bits
    • Similarity
      96.23%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DAA23947
      100% cov
    • Alignment Length
      928 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73989274
      XP_534118
    • Hit length
      897 aa
    • E Value
      0E0
    • BLAST Score
      1,731.5 bits
    • Similarity
      96.95%
    • Coverage
      95.37%
    • Alignment (schematic)

      SEQ ID NO 8
      95.37% cov
      XP_534118
      98.66% cov
    • Alignment Length
      885 aa
Occurrence
258 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
30
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332822201
      XM_001152129
      1 of 12 hits reported for Pan troglodytes.
    • Hit length
      3,057 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_001152129
      0.98% cov
    • Alignment Length
      30 bp
    • CIGAR string
      30M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:318067972
      NM_183401
      1 of 13 hits reported for Homo sapiens.
    • Hit length
      4,201 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_183401
      0.71% cov
    • Alignment Length
      30 bp
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
27
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332845768
      XM_003315068
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      1,773 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_003315068
      1.52% cov
    • Alignment Length
      27 bp
    • CIGAR string
      27M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262941
      XM_003280469
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,892 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_003280469
      1.43% cov
    • Alignment Length
      27 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297715416
      XM_002834029
      1 of 4 hits reported for Pongo abelii.
    • Hit length
      1,805 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_002834029
      1.5% cov
    • Alignment Length
      27 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297283906
      XM_001113046
      1 of 4 hits reported for Macaca mulatta.
    • Hit length
      1,804 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_001113046
      1.5% cov
    • Alignment Length
      27 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296233357
      XM_002761932
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      1,586 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_002761932
      1.7% cov
    • Alignment Length
      27 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:257900475
      NM_001164719
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      1,782 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_001164719
      1.52% cov
    • Alignment Length
      27 bp
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder

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