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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings
44 sequences found in this patent (in total)

Displaying 1 - 10 of 44 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
456
Type
DNA
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002729
      0.01% cov
    • Alignment Length
      456 bp
    • CIGAR string
      456M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AM946981
      0.01% cov
    • Alignment Length
      456 bp
    • CIGAR string
      456M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FN649414
      0.01% cov
    • Alignment Length
      456 bp
    • CIGAR string
      456M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:260447279
      CP001637
    • Hit length
      4,630,707 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001637
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000819
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001665
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001396
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000948
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000946
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000802
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
      1 of 2 hits reported for Escherichia coli str. K-12 substr. W3110.
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP009048
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      U00096
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:1147558
      X90754
    • Hit length
      4,680 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      X90754
      9.74% cov
    • Alignment Length
      456 bp
  • Shigella boydii Sb227

    Shigella boydii Sb227

    • Public DB hit
      GI:81244029
      CP000036
    • Hit length
      4,519,823 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000036
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218359353
      CU928160
    • Hit length
      4,700,560 bp
    • E Value
      0E0
    • BLAST Score
      832.1 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CU928160
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157076741
      CP000800
    • Hit length
      4,979,619 bp
    • E Value
      0E0
    • BLAST Score
      832.1 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000800
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      0E0
    • BLAST Score
      815.5 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002516
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      0E0
    • BLAST Score
      815.5 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002185
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      0E0
    • BLAST Score
      815.5 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP010960
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      815.5 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP010958
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      815.5 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP010953
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      0E0
    • BLAST Score
      815.5 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CU928145
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli SE11

    Escherichia coli SE11

    • Public DB hit
      GI:209910450
      AP009240
    • Hit length
      4,887,515 bp
    • E Value
      0E0
    • BLAST Score
      815.5 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP009240
      0.01% cov
    • Alignment Length
      456 bp
Occurrence
15 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
151
Type
peptide
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:16129005
      NP_415560
    • Hit length
      151 aa
    • E Value
      2.01E-78
    • BLAST Score
      295.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_415560
      100% cov
    • Alignment Length
      151 aa
    • CIGAR string
      151M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli LT-68

    Escherichia coli LT-68

    • Public DB hit
      GI:323174841
      EFZ60456
    • Hit length
      151 aa
    • E Value
      2.9E-78
    • BLAST Score
      295 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EFZ60456
      100% cov
    • Alignment Length
      151 aa
    • CIGAR string
      5MN145M mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella dysenteriae CDC 74-1112

    Shigella dysenteriae CDC 74-1112

    • Public DB hit
      GI:320175975
      EFW51050
    • Hit length
      151 aa
    • E Value
      3.69E-78
    • BLAST Score
      294.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EFW51050
      100% cov
    • Alignment Length
      151 aa
    • CIGAR string
      65MN85M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:290425
      AAA23616
    • Hit length
      151 aa
    • E Value
      5.24E-78
    • BLAST Score
      294.3 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAA23616
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli 1827-70

    Escherichia coli 1827-70

    • Public DB hit
      GI:312971177
      ZP_07785355
    • Hit length
      151 aa
    • E Value
      1.05E-77
    • BLAST Score
      293.5 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_07785355
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli M863

    Escherichia coli M863

    • Public DB hit
      GI:323966985
      EGB62411
    • Hit length
      151 aa
    • E Value
      5.03E-77
    • BLAST Score
      291.2 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EGB62411
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli UTI89

    Escherichia coli UTI89

    • Public DB hit
      GI:91210192
      YP_540178
    • Hit length
      151 aa
    • E Value
      1.99E-76
    • BLAST Score
      289.3 bits
    • Similarity
      98.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_540178
      100% cov
    • Alignment Length
      151 aa
  • Shigella sonnei 53G

    Shigella sonnei 53G

    • Public DB hit
      GI:323165532
      EFZ51319
    • Hit length
      150 aa
    • E Value
      1.81E-66
    • BLAST Score
      256.1 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EFZ51319
      100% cov
    • Alignment Length
      151 aa
  • Shigella sonnei Ss046

    Shigella sonnei Ss046

    • Public DB hit
      GI:74311595
      YP_310014
    • Hit length
      150 aa
    • E Value
      5.09E-66
    • BLAST Score
      254.6 bits
    • Similarity
      98.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_310014
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli H299

    Escherichia coli H299

    • Public DB hit
      GI:331682542
      ZP_08383161
    • Hit length
      152 aa
    • E Value
      8.82E-66
    • BLAST Score
      253.8 bits
    • Similarity
      98.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_08383161
      100% cov
    • Alignment Length
      152 aa
  • Escherichia coli IAI39

    Escherichia coli IAI39

    • Public DB hit
      GI:218700455
      YP_002408084
    • Hit length
      151 aa
    • E Value
      1.82E-65
    • BLAST Score
      252.7 bits
    • Similarity
      98.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_002408084
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli TA280

    Escherichia coli TA280

    • Public DB hit
      GI:331672563
      ZP_08373352
    • Hit length
      151 aa
    • E Value
      2.59E-65
    • BLAST Score
      252.3 bits
    • Similarity
      98.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_08373352
      100% cov
    • Alignment Length
      151 aa
  • Escherichia albertii TW07627

    Escherichia albertii TW07627

    • Public DB hit
      GI:170768214
      ZP_02902667
    • Hit length
      151 aa
    • E Value
      1.19E-64
    • BLAST Score
      250 bits
    • Similarity
      98.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_02902667
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli 536

    Escherichia coli 536

    • Public DB hit
      GI:110641219
      YP_668949
    • Hit length
      152 aa
    • E Value
      1.73E-64
    • BLAST Score
      249.6 bits
    • Similarity
      98.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_668949
      100% cov
    • Alignment Length
      152 aa
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15801159
      NP_287176
    • Hit length
      152 aa
    • E Value
      3.47E-64
    • BLAST Score
      248.4 bits
    • Similarity
      98.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_287176
      100% cov
    • Alignment Length
      152 aa
Occurrence
99 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
456
Type
DNA
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP002729
      0.01% cov
    • Alignment Length
      456 bp
    • CIGAR string
      456M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AM946981
      0.01% cov
    • Alignment Length
      456 bp
    • CIGAR string
      456M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FN649414
      0.01% cov
    • Alignment Length
      456 bp
    • CIGAR string
      456M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:260447279
      CP001637
    • Hit length
      4,630,707 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001637
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000819
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001665
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001396
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli O127:H6 str. E2348/69

    Escherichia coli O127:H6 str. E2348/69

    • Public DB hit
      GI:215263233
      FM180568
    • Hit length
      4,965,553 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FM180568
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000948
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000946
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000802
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AP009048
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      U00096
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:1147558
      X90754
      1 of 2 hits reported for Escherichia coli.
    • Hit length
      4,680 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      X90754
      9.74% cov
    • Alignment Length
      456 bp
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP002797
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP002516
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP002185
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001846
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AP009378
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AP010960
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AP010958
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AP010953
      0.01% cov
    • Alignment Length
      456 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001368
      0.01% cov
    • Alignment Length
      456 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
151
Type
peptide
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15801158
      NP_287175
    • Hit length
      151 aa
    • E Value
      3.28E-79
    • BLAST Score
      298.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_287175
      100% cov
    • Alignment Length
      151 aa
    • CIGAR string
      151M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella flexneri 2a str. 2457T

    Shigella flexneri 2a str. 2457T

    • Public DB hit
      GI:30062565
      NP_836736
    • Hit length
      151 aa
    • E Value
      4.47E-79
    • BLAST Score
      297.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_836736
      100% cov
    • Alignment Length
      151 aa
    • CIGAR string
      135MN15M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157158515
      YP_001462273
    • Hit length
      160 aa
    • E Value
      6.14E-79
    • BLAST Score
      297.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_001462273
      94.38% cov
    • Alignment Length
      151 aa
    • CIGAR string
      151M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella sonnei Ss046

    Shigella sonnei Ss046

    • Public DB hit
      GI:74311594
      YP_310013
      1 of 2 hits reported for Shigella sonnei Ss046.
    • Hit length
      151 aa
    • E Value
      1.06E-78
    • BLAST Score
      296.6 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_310013
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307553044
      ADN45819
    • Hit length
      151 aa
    • E Value
      1.06E-78
    • BLAST Score
      296.6 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ADN45819
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli S88

    Escherichia coli S88

    • Public DB hit
      GI:218557922
      YP_002390835
    • Hit length
      151 aa
    • E Value
      1.22E-78
    • BLAST Score
      296.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_002390835
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli MS 196-1

    Escherichia coli MS 196-1

    • Public DB hit
      GI:301029748
      ZP_07192802
    • Hit length
      151 aa
    • E Value
      1.36E-78
    • BLAST Score
      296.2 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_07192802
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218694576
      YP_002402243
    • Hit length
      151 aa
    • E Value
      1.51E-78
    • BLAST Score
      296.2 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_002402243
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli CFT073

    Escherichia coli CFT073

    • Public DB hit
      GI:26247178
      NP_753218
    • Hit length
      160 aa
    • E Value
      1.59E-78
    • BLAST Score
      296.2 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_753218
      94.38% cov
    • Alignment Length
      151 aa
  • Escherichia coli UTI89

    Escherichia coli UTI89

    • Public DB hit
      GI:91210191
      YP_540177
    • Hit length
      160 aa
    • E Value
      2.33E-78
    • BLAST Score
      295.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_540177
      94.38% cov
    • Alignment Length
      151 aa
  • Shigella flexneri 5 str. 8401

    Shigella flexneri 5 str. 8401

    • Public DB hit
      GI:110805050
      YP_688570
    • Hit length
      151 aa
    • E Value
      2.49E-78
    • BLAST Score
      295.4 bits
    • Similarity
      99.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_688570
      100% cov
    • Alignment Length
      151 aa
  • Escherichia coli TA143

    Escherichia coli TA143

    • Public DB hit
      GI:331662443
      ZP_08363366
    • Hit length
      160 aa
    • E Value
      5.07E-78
    • BLAST Score
      294.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_08363366
      94.38% cov
    • Alignment Length
      151 aa
  • Citrobacter koseri ATCC BAA-895

    Citrobacter koseri ATCC BAA-895

    • Public DB hit
      GI:157146269
      YP_001453588
    • Hit length
      160 aa
    • E Value
      5.12E-69
    • BLAST Score
      264.6 bits
    • Similarity
      94.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_001453588
      94.38% cov
    • Alignment Length
      151 aa
Occurrence
46 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
333
Type
DNA
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002729
      0.01% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FN649414
      0.01% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:260447279
      CP001637
    • Hit length
      4,630,707 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001637
      0.01% cov
    • Alignment Length
      333 bp
    • CIGAR string
      333M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001396
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000948
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AP009048
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      U00096
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:1147558
      X90754
      1 of 8 hits reported for Escherichia coli.
    • Hit length
      4,680 bp
    • E Value
      4.31E-173
    • BLAST Score
      616.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      X90754
      7.12% cov
    • Alignment Length
      333 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      9.32E-170
    • BLAST Score
      605 bits
    • Similarity
      99.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AM946981
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      9.32E-170
    • BLAST Score
      605 bits
    • Similarity
      99.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000819
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      9.32E-170
    • BLAST Score
      605 bits
    • Similarity
      99.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001665
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      9.32E-170
    • BLAST Score
      605 bits
    • Similarity
      99.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000946
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      9.32E-170
    • BLAST Score
      605 bits
    • Similarity
      99.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000802
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      4.34E-168
    • BLAST Score
      599.4 bits
    • Similarity
      99.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001846
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      4.34E-168
    • BLAST Score
      599.4 bits
    • Similarity
      99.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001368
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218359353
      CU928160
    • Hit length
      4,700,560 bp
    • E Value
      4.34E-168
    • BLAST Score
      599.4 bits
    • Similarity
      99.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CU928160
      0.01% cov
    • Alignment Length
      333 bp
  • Escherichia coli O157:H7 str. EC4115

    Escherichia coli O157:H7 str. EC4115

    • Public DB hit
      GI:209157093
      CP001164
    • Hit length
      5,572,075 bp
    • E Value
      4.34E-168
    • BLAST Score
      599.4 bits
    • Similarity
      99.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001164
      0.01% cov
    • Alignment Length
      333 bp
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
110
Type
peptide
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:16129006
      NP_415561
    • Hit length
      110 aa
    • E Value
      3.65E-55
    • BLAST Score
      218.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_415561
      100% cov
    • Alignment Length
      110 aa
    • CIGAR string
      110M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli S88

    Escherichia coli S88

    • Public DB hit
      GI:218557924
      YP_002390837
    • Hit length
      163 aa
    • E Value
      5.68E-55
    • BLAST Score
      218 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_002390837
      67.48% cov
    • Alignment Length
      110 aa
    • CIGAR string
      2MN20MN86M mismatches: 2 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:148751477
      ABR10299
    • Hit length
      110 aa
    • E Value
      8.48E-55
    • BLAST Score
      217.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ABR10299
      100% cov
    • Alignment Length
      110 aa
    • CIGAR string
      73MN36M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:170020560
      YP_001725514
    • Hit length
      110 aa
    • E Value
      1.14E-54
    • BLAST Score
      216.9 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_001725514
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli B185

    Escherichia coli B185

    • Public DB hit
      GI:293414341
      ZP_06656990
    • Hit length
      110 aa
    • E Value
      1.28E-54
    • BLAST Score
      216.5 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ZP_06656990
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15801160
      NP_287177
    • Hit length
      110 aa
    • E Value
      2.18E-54
    • BLAST Score
      215.7 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_287177
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157160566
      YP_001457884
    • Hit length
      110 aa
    • E Value
      2.43E-54
    • BLAST Score
      215.7 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_001457884
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli B7A

    Escherichia coli B7A

    • Public DB hit
      GI:191166899
      ZP_03028723
    • Hit length
      110 aa
    • E Value
      2.99E-54
    • BLAST Score
      215.3 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ZP_03028723
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157156575
      YP_001462275
    • Hit length
      110 aa
    • E Value
      5.23E-54
    • BLAST Score
      214.5 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_001462275
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli LF82

    Escherichia coli LF82

    • Public DB hit
      GI:222032797
      CAP75536
    • Hit length
      110 aa
    • E Value
      1.56E-49
    • BLAST Score
      199.9 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CAP75536
      100% cov
    • Alignment Length
      110 aa
  • Shigella sonnei Ss046

    Shigella sonnei Ss046

    • Public DB hit
      GI:74311598
      YP_310017
    • Hit length
      110 aa
    • E Value
      1.59E-49
    • BLAST Score
      199.9 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_310017
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli O55:H7 str. USDA 5905

    Escherichia coli O55:H7 str. USDA 5905

    • Public DB hit
      GI:320659308
      EFX26877
    • Hit length
      110 aa
    • E Value
      1.8E-49
    • BLAST Score
      199.5 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EFX26877
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli MS 21-1

    Escherichia coli MS 21-1

    • Public DB hit
      GI:300935182
      ZP_07150208
    • Hit length
      110 aa
    • E Value
      2.6E-49
    • BLAST Score
      199.1 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ZP_07150208
      100% cov
    • Alignment Length
      110 aa
  • Shigella boydii 5216-82

    Shigella boydii 5216-82

    • Public DB hit
      GI:332088797
      EGI93909
    • Hit length
      110 aa
    • E Value
      3.02E-49
    • BLAST Score
      198.7 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EGI93909
      100% cov
    • Alignment Length
      110 aa
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:307310178
      ZP_07589828
    • Hit length
      110 aa
    • E Value
      4.66E-49
    • BLAST Score
      198.4 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ZP_07589828
      100% cov
    • Alignment Length
      110 aa
Occurrence
14 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
651
Type
DNA
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:260447279
      CP001637
    • Hit length
      4,630,707 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001637
      0.01% cov
    • Alignment Length
      651 bp
    • CIGAR string
      651M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001396
      0.01% cov
    • Alignment Length
      651 bp
    • CIGAR string
      651M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000948
      0.01% cov
    • Alignment Length
      651 bp
    • CIGAR string
      651M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AP009048
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      U00096
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:1147558
      X90754
    • Hit length
      4,680 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      X90754
      13.91% cov
    • Alignment Length
      651 bp
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      0E0
    • BLAST Score
      1,197.7 bits
    • Similarity
      99.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP002729
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      0E0
    • BLAST Score
      1,197.7 bits
    • Similarity
      99.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      FN649414
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      0E0
    • BLAST Score
      1,197.7 bits
    • Similarity
      99.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000802
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      1,192.2 bits
    • Similarity
      99.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AM946981
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      0E0
    • BLAST Score
      1,192.2 bits
    • Similarity
      99.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000819
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      1,192.2 bits
    • Similarity
      99.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001665
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      0E0
    • BLAST Score
      1,192.2 bits
    • Similarity
      99.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000946
      0.01% cov
    • Alignment Length
      651 bp
  • Shigella boydii Sb227

    Shigella boydii Sb227

    • Public DB hit
      GI:81244029
      CP000036
    • Hit length
      4,519,823 bp
    • E Value
      0E0
    • BLAST Score
      1,186.7 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000036
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001855
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP002167
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001671
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001969
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli LF82

    Escherichia coli LF82

    • Public DB hit
      GI:222031834
      CU651637
    • Hit length
      4,773,108 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CU651637
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli ED1a

    Escherichia coli ED1a

    • Public DB hit
      GI:218425442
      CU928162
    • Hit length
      5,209,548 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CU928162
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli S88

    Escherichia coli S88

    • Public DB hit
      GI:218363708
      CU928161
    • Hit length
      5,032,268 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CU928161
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli O127:H6 str. E2348/69

    Escherichia coli O127:H6 str. E2348/69

    • Public DB hit
      GI:215263233
      FM180568
    • Hit length
      4,965,553 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      FM180568
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli APEC O1

    Escherichia coli APEC O1

    • Public DB hit
      GI:115511419
      CP000468
    • Hit length
      5,082,025 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000468
      0.01% cov
    • Alignment Length
      651 bp
  • Escherichia coli 536

    Escherichia coli 536

    • Public DB hit
      GI:110341805
      CP000247
    • Hit length
      4,938,920 bp
    • E Value
      0E0
    • BLAST Score
      1,181.1 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000247
      0.01% cov
    • Alignment Length
      651 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
8
Length
216
Type
peptide
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:16129003
      NP_415558
    • Hit length
      216 aa
    • E Value
      5.55E-123
    • BLAST Score
      444.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_415558
      100% cov
    • Alignment Length
      216 aa
    • CIGAR string
      216M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 3431

    Escherichia coli 3431

    • Public DB hit
      GI:315618207
      EFU98797
    • Hit length
      216 aa
    • E Value
      2.12E-122
    • BLAST Score
      442.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EFU98797
      100% cov
    • Alignment Length
      216 aa
    • CIGAR string
      192MN23M mismatches: 1 - insertions: 0 - deletions: 0
  • Shigella boydii Sb227

    Shigella boydii Sb227

    • Public DB hit
      GI:82544494
      YP_408441
    • Hit length
      216 aa
    • E Value
      2.53E-122
    • BLAST Score
      442.6 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_408441
      100% cov
    • Alignment Length
      216 aa
    • CIGAR string
      18MN197M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15801157
      NP_287174
    • Hit length
      216 aa
    • E Value
      4.77E-122
    • BLAST Score
      441.4 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_287174
      100% cov
    • Alignment Length
      216 aa
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253773935
      YP_003036766
    • Hit length
      216 aa
    • E Value
      8.14E-122
    • BLAST Score
      440.7 bits
    • Similarity
      99.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_003036766
      100% cov
    • Alignment Length
      216 aa
  • Escherichia coli M605

    Escherichia coli M605

    • Public DB hit
      GI:331646293
      ZP_08347396
    • Hit length
      216 aa
    • E Value
      8.35E-122
    • BLAST Score
      440.7 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_08347396
      100% cov
    • Alignment Length
      216 aa
  • Escherichia coli B354

    Escherichia coli B354

    • Public DB hit
      GI:293409411
      ZP_06652987
    • Hit length
      216 aa
    • E Value
      1.55E-121
    • BLAST Score
      439.9 bits
    • Similarity
      99.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_06652987
      100% cov
    • Alignment Length
      216 aa
  • Escherichia coli IAI39

    Escherichia coli IAI39

    • Public DB hit
      GI:218700457
      YP_002408086
    • Hit length
      216 aa
    • E Value
      1.75E-121
    • BLAST Score
      439.9 bits
    • Similarity
      99.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_002408086
      100% cov
    • Alignment Length
      216 aa
  • Escherichia coli B171

    Escherichia coli B171

    • Public DB hit
      GI:194428408
      ZP_03060948
    • Hit length
      216 aa
    • E Value
      2.06E-121
    • BLAST Score
      439.5 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_03060948
      100% cov
    • Alignment Length
      216 aa
  • Escherichia coli B185

    Escherichia coli B185

    • Public DB hit
      GI:293414338
      ZP_06656987
    • Hit length
      216 aa
    • E Value
      3.31E-121
    • BLAST Score
      438.7 bits
    • Similarity
      99.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_06656987
      100% cov
    • Alignment Length
      216 aa
  • Shigella flexneri K-272

    Shigella flexneri K-272

    • Public DB hit
      GI:333009595
      EGK29047
    • Hit length
      216 aa
    • E Value
      4.21E-121
    • BLAST Score
      438.3 bits
    • Similarity
      99.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EGK29047
      100% cov
    • Alignment Length
      216 aa
  • Escherichia coli E22

    Escherichia coli E22

    • Public DB hit
      GI:193064557
      ZP_03045637
    • Hit length
      216 aa
    • E Value
      9.39E-121
    • BLAST Score
      437.2 bits
    • Similarity
      99.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_03045637
      100% cov
    • Alignment Length
      216 aa
  • Escherichia coli O157:H7 str. EC869

    Escherichia coli O157:H7 str. EC869

    • Public DB hit
      GI:168789970
      ZP_02814977
    • Hit length
      240 aa
    • E Value
      6.72E-120
    • BLAST Score
      434.5 bits
    • Similarity
      99.53%
    • Coverage
      98.15%
    • Alignment (schematic)

      SEQ ID NO 8
      98.15% cov
      ZP_02814977
      88.33% cov
    • Alignment Length
      212 aa
  • Escherichia albertii TW07627

    Escherichia albertii TW07627

    • Public DB hit
      GI:170768176
      ZP_02902629
    • Hit length
      216 aa
    • E Value
      1.8E-119
    • BLAST Score
      433 bits
    • Similarity
      98.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_02902629
      100% cov
    • Alignment Length
      216 aa
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
390
Type
DNA
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AM946981
      0.01% cov
    • Alignment Length
      390 bp
    • CIGAR string
      390M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      FN649414
      0.01% cov
    • Alignment Length
      390 bp
    • CIGAR string
      390M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:260447279
      CP001637
    • Hit length
      4,630,707 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP001637
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000819
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP001665
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP001396
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000948
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000946
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000802
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AP009048
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      U00096
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:1147558
      X90754
    • Hit length
      4,680 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      X90754
      8.33% cov
    • Alignment Length
      390 bp
  • Shigella sonnei Ss046

    Shigella sonnei Ss046

    • Public DB hit
      GI:73854091
      CP000038
    • Hit length
      4,825,265 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000038
      0.01% cov
    • Alignment Length
      390 bp
  • Cloning vector pLR70

    Cloning vector pLR70

    • Public DB hit
      GI:158828326
      EU199781
    • Hit length
      412 bp
    • E Value
      0E0
    • BLAST Score
      717.6 bits
    • Similarity
      100%
    • Coverage
      99.49%
    • Alignment (schematic)

      SEQ ID NO 9
      99.49% cov
      EU199781
      94.17% cov
    • Alignment Length
      388 bp
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP002729
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP002516
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP002185
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AP010960
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AP010958
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AP010953
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218359353
      CU928160
    • Hit length
      4,700,560 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CU928160
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CU928145
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli SE11

    Escherichia coli SE11

    • Public DB hit
      GI:209910450
      AP009240
    • Hit length
      4,887,515 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AP009240
      0.01% cov
    • Alignment Length
      390 bp
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157076741
      CP000800
    • Hit length
      4,979,619 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000800
      0.01% cov
    • Alignment Length
      390 bp
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
129
Type
peptide
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
Occurrence
24 times in PatSeqDB
Tools
PatSeq Finder

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