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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings
44 sequences found in this patent (in total)

Displaying 1 - 10 of 44 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
179
Type
peptide
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:18266698
      NP_543171
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      179 aa
    • E Value
      6.8E-97
    • BLAST Score
      357.5 bits
    • Similarity
      98.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_543171
      100% cov
    • Alignment Length
      179 aa
    • CIGAR string
      41MN12MN14MN36M2N17MN51MNM mismatches: 7 - insertions: 0 - deletions: 0
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291399859
      XP_002716581
    • Hit length
      201 aa
    • E Value
      1.01E-95
    • BLAST Score
      353.2 bits
    • Similarity
      98.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_002716581
      89.05% cov
    • Alignment Length
      179 aa
    • CIGAR string
      15MN65MN15MN8MNMN15MN18MN15MN16MNMN mismatches: 10 - insertions: 0 - deletions: 0
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73990624
      XP_542807
    • Hit length
      201 aa
    • E Value
      2.58E-95
    • BLAST Score
      352.1 bits
    • Similarity
      99.44%
    • Coverage
      98.88%
    • Alignment (schematic)

      SEQ ID NO 1
      98.88% cov
      XP_542807
      88.06% cov
    • Alignment Length
      177 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301786629
      XP_002928728
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      201 aa
    • E Value
      3.08E-95
    • BLAST Score
      351.7 bits
    • Similarity
      99.44%
    • Coverage
      98.88%
    • Alignment (schematic)

      SEQ ID NO 1
      98.88% cov
      XP_002928728
      88.06% cov
    • Alignment Length
      177 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:171184430
      NP_001116323
      1 of 3 hits reported for Mus musculus.
    • Hit length
      201 aa
    • E Value
      5.52E-95
    • BLAST Score
      350.9 bits
    • Similarity
      97.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_001116323
      89.05% cov
    • Alignment Length
      179 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335299608
      XP_003358624
      1 of 3 hits reported for Sus scrofa.
    • Hit length
      200 aa
    • E Value
      2.17E-94
    • BLAST Score
      349 bits
    • Similarity
      97.75%
    • Coverage
      99.44%
    • Alignment (schematic)

      SEQ ID NO 1
      99.44% cov
      XP_003358624
      89% cov
    • Alignment Length
      178 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296227983
      XP_002759597
    • Hit length
      201 aa
    • E Value
      3.4E-94
    • BLAST Score
      348.2 bits
    • Similarity
      97.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_002759597
      89.05% cov
    • Alignment Length
      179 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109049126
      XP_001114054
    • Hit length
      201 aa
    • E Value
      4.67E-94
    • BLAST Score
      347.8 bits
    • Similarity
      98.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XP_001114054
      89.05% cov
    • Alignment Length
      179 aa
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
180
Type
peptide
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:6753812
      NP_034305
      1 of 3 hits reported for Mus musculus.
    • Hit length
      205 aa
    • E Value
      8.67E-78
    • BLAST Score
      293.9 bits
    • Similarity
      95.51%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      NP_034305
      86.83% cov
    • Alignment Length
      178 aa
    • CIGAR string
      10MN2MN2M2N2MN25MN10M2N28M2NMN6MN19MN7MN5MN7MN3MNMN3MN2M3NMN9MN11M2H mismatches: 24 - insertions: 0 - deletions: 0
  • Mus spretus

    Mus spretus

    • Public DB hit
      GI:217337606
      ACK43162
    • Hit length
      205 aa
    • E Value
      1.82E-77
    • BLAST Score
      292.7 bits
    • Similarity
      95.51%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      ACK43162
      86.83% cov
    • Alignment Length
      178 aa
    • CIGAR string
      10MN2MN2M2N2MN25MN3MN6MN29M2NMN6MN19MN7MN5MN7MN3MNMN3MN2M3NMN9MN11M2H mismatches: 24 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:23097354
      NP_690920
    • Hit length
      208 aa
    • E Value
      2.38E-75
    • BLAST Score
      285.8 bits
    • Similarity
      92.13%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      NP_690920
      85.58% cov
    • Alignment Length
      178 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:281344675
      EFB20259
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      190 aa
    • E Value
      1.23E-63
    • BLAST Score
      246.9 bits
    • Similarity
      81.92%
    • Coverage
      98.33%
    • Alignment (schematic)

      SEQ ID NO 2
      98.33% cov
      EFB20259
      93.16% cov
    • Alignment Length
      177 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114639023
      XP_508611
    • Hit length
      208 aa
    • E Value
      5.47E-58
    • BLAST Score
      228 bits
    • Similarity
      88.2%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      XP_508611
      85.58% cov
    • Alignment Length
      178 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:56119112
      NP_001007817
    • Hit length
      209 aa
    • E Value
      1.42E-56
    • BLAST Score
      223.4 bits
    • Similarity
      80.34%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      NP_001007817
      85.17% cov
    • Alignment Length
      178 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297687937
      XP_002821454
    • Hit length
      208 aa
    • E Value
      3.73E-55
    • BLAST Score
      218.8 bits
    • Similarity
      88.2%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      XP_002821454
      85.58% cov
    • Alignment Length
      178 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332257962
      XP_003278072
    • Hit length
      208 aa
    • E Value
      6.74E-55
    • BLAST Score
      217.6 bits
    • Similarity
      89.33%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      XP_003278072
      85.58% cov
    • Alignment Length
      178 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:119595166
      EAW74760
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      209 aa
    • E Value
      1.9E-54
    • BLAST Score
      216.5 bits
    • Similarity
      88.2%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      EAW74760
      85.17% cov
    • Alignment Length
      178 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30584097
      AAP36297
    • Hit length
      209 aa
    • E Value
      2.1E-54
    • BLAST Score
      216.1 bits
    • Similarity
      88.2%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      AAP36297
      85.17% cov
    • Alignment Length
      178 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:72535210
      NP_001026967
    • Hit length
      211 aa
    • E Value
      2.88E-53
    • BLAST Score
      212.2 bits
    • Similarity
      85.96%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 2
      98.89% cov
      NP_001026967
      84.36% cov
    • Alignment Length
      178 aa
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
191
Type
peptide
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291413981
      XP_002723239
    • Hit length
      191 aa
    • E Value
      2.24E-107
    • BLAST Score
      392.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XP_002723239
      100% cov
    • Alignment Length
      191 aa
    • CIGAR string
      16MN174M mismatches: 1 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157818653
      NP_001100922
    • Hit length
      191 aa
    • E Value
      6.15E-107
    • BLAST Score
      391 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NP_001100922
      100% cov
    • Alignment Length
      191 aa
    • CIGAR string
      16MN95MN78M mismatches: 2 - insertions: 0 - deletions: 0
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:6755000
      NP_035181
      1 of 3 hits reported for Mus musculus.
    • Hit length
      191 aa
    • E Value
      7.77E-107
    • BLAST Score
      390.6 bits
    • Similarity
      99.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NP_035181
      100% cov
    • Alignment Length
      191 aa
    • CIGAR string
      11MN4MN174M mismatches: 2 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:7019485
      NP_037364
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      191 aa
    • E Value
      8.24E-107
    • BLAST Score
      390.6 bits
    • Similarity
      99.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NP_037364
      100% cov
    • Alignment Length
      191 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:54697004
      AAV38874
      1 of 2 hits reported for synthetic construct.
    • Hit length
      192 aa
    • E Value
      1.04E-106
    • BLAST Score
      390.2 bits
    • Similarity
      99.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAV38874
      99.48% cov
    • Alignment Length
      191 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332820819
      XP_527191
    • Hit length
      191 aa
    • E Value
      2.13E-106
    • BLAST Score
      389 bits
    • Similarity
      99.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XP_527191
      100% cov
    • Alignment Length
      191 aa
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:126143512
      BAF47370
    • Hit length
      191 aa
    • E Value
      3.16E-106
    • BLAST Score
      388.7 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      BAF47370
      100% cov
    • Alignment Length
      191 aa
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:126320798
      XP_001363042
    • Hit length
      193 aa
    • E Value
      2.16E-95
    • BLAST Score
      352.4 bits
    • Similarity
      94.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XP_001363042
      100% cov
    • Alignment Length
      193 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:74003143
      XP_851917
    • Hit length
      189 aa
    • E Value
      2.49E-94
    • BLAST Score
      349 bits
    • Similarity
      98.43%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XP_851917
      100% cov
    • Alignment Length
      191 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332228065
      XP_003263210
    • Hit length
      191 aa
    • E Value
      3.3E-94
    • BLAST Score
      348.6 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XP_003263210
      100% cov
    • Alignment Length
      191 aa
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
391
Type
peptide
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157817959
      NP_001101986
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      391 aa
    • E Value
      0E0
    • BLAST Score
      797 bits
    • Similarity
      99.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001101986
      100% cov
    • Alignment Length
      391 aa
    • CIGAR string
      222MN6MN128MN29MN2M mismatches: 4 - insertions: 0 - deletions: 0
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:154152087
      NP_001093826
    • Hit length
      391 aa
    • E Value
      0E0
    • BLAST Score
      794.3 bits
    • Similarity
      99.23%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001093826
      100% cov
    • Alignment Length
      391 aa
    • CIGAR string
      190MN31MN6MN101MN26MN29MN2M mismatches: 6 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:5454004
      NP_006259
    • Hit length
      391 aa
    • E Value
      0E0
    • BLAST Score
      793.1 bits
    • Similarity
      98.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_006259
      100% cov
    • Alignment Length
      391 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:6755314
      NP_035392
      1 of 3 hits reported for Mus musculus.
    • Hit length
      391 aa
    • E Value
      0E0
    • BLAST Score
      792.7 bits
    • Similarity
      99.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_035392
      100% cov
    • Alignment Length
      391 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30584805
      AAP36655
    • Hit length
      392 aa
    • E Value
      0E0
    • BLAST Score
      792.7 bits
    • Similarity
      98.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAP36655
      99.74% cov
    • Alignment Length
      391 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291414421
      XP_002723450
    • Hit length
      388 aa
    • E Value
      0E0
    • BLAST Score
      716.5 bits
    • Similarity
      99.23%
    • Coverage
      99.23%
    • Alignment (schematic)

      SEQ ID NO 4
      99.23% cov
      XP_002723450
      100% cov
    • Alignment Length
      388 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311247329
      XP_003122585
    • Hit length
      391 aa
    • E Value
      0E0
    • BLAST Score
      696.4 bits
    • Similarity
      98.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003122585
      100% cov
    • Alignment Length
      391 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149725409
      XP_001492666
    • Hit length
      391 aa
    • E Value
      0E0
    • BLAST Score
      694.1 bits
    • Similarity
      98.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001492666
      100% cov
    • Alignment Length
      391 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73983122
      XP_866599
    • Hit length
      396 aa
    • E Value
      0E0
    • BLAST Score
      693.7 bits
    • Similarity
      93.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_866599
      100% cov
    • Alignment Length
      404 aa
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:126338798
      XP_001365864
    • Hit length
      395 aa
    • E Value
      0E0
    • BLAST Score
      691 bits
    • Similarity
      97.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001365864
      100% cov
    • Alignment Length
      395 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098008
      NP_001127678
    • Hit length
      405 aa
    • E Value
      0E0
    • BLAST Score
      688.3 bits
    • Similarity
      95.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001127678
      100% cov
    • Alignment Length
      405 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297267436
      XP_002808108
    • Hit length
      391 aa
    • E Value
      0E0
    • BLAST Score
      688 bits
    • Similarity
      97.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002808108
      100% cov
    • Alignment Length
      391 aa
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
881
Type
DNA
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:171184427
      NM_011810
      1 of 4 hits reported for Mus musculus.
    • Hit length
      1,032 bp
    • E Value
      0E0
    • BLAST Score
      1,074 bits
    • Similarity
      88.66%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_011810
      85.95% cov
    • Alignment Length
      891 bp
    • CIGAR string
      32MN14MN3MD3MI10MN4MN15MN5MN17MN11MN23MN20MN2MN34MN3MN11MN17MN4MN3MN8MN17MN11M2NMN5MN2MN2MN2MN5MN2MN8MN8MN26MN13MN9MN4MNMN8MN5MNMN20MN8MN17MN14MN20MN5MN2MN8MN11MNMN18MN8MN5MI2MD15MN2MN20MN12MN9M2N2M2N3MN2MN9MN2MN4MN3MN2MN5M2NM2N20MN5MNMN11MN29MIM5I6MN31M3NI3MN10MN13MNMN21MD5MI6MN11MDMNMNMN3MN3MN8M mismatches: 87 - insertions: 10 - deletions: 4
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:293361305
      XM_002729959
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      1,317 bp
    • E Value
      0E0
    • BLAST Score
      1,007.5 bits
    • Similarity
      88.69%
    • Coverage
      93.53%
    • Alignment (schematic)

      SEQ ID NO 5
      93.53% cov
      XM_002729959
      63.48% cov
    • Alignment Length
      840 bp
    • CIGAR string
      57H8MNMN2MN21MN17MN11MN5MN29MN46MN3MN29MN4MN3MN8MD3MI23MN2M2NMN5MN2MN2MN8MN2MN5MN5MN5MN24MN4MN21MN10MN3MN4MI2MNMD8MN10MN26MNM2N11MN17MN2MN17MN2MN8MN14MN2MN17MN11MN8MN20MN12MN9MD4MNI6MN17MN3MN7M3NM2N7MN14MN4MN33MN8MIM5I6MN15MN15MNM5I4MN24MN6MNI9MN6MD5MI6MN9MN3MN3MN3MN3MN8M mismatches: 75 - insertions: 16 - deletions: 4
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335299609
      XM_003358577
      1 of 7 hits reported for Sus scrofa.
    • Hit length
      930 bp
    • E Value
      0E0
    • BLAST Score
      795.2 bits
    • Similarity
      84.74%
    • Coverage
      90.81%
    • Alignment (schematic)

      SEQ ID NO 5
      90.81% cov
      XM_003358577
      87.1% cov
    • Alignment Length
      819 bp
    • CIGAR string
      56H8MN5MN21MN5MN8MN5MN14MN2MN14MN21MN4MN2MN2MN2MN41MN29MN2MD3MI2MN5MN38MN5MN8M2N7MN2MN11MN7MN9MN11MN11MN6M4N7MN8MN11MN11MN12MN13MN23MN8MN9MN28MN5MN2MN6MNMI2MD12MN2MN17MN2MN2MN3MN4M2NMN3MNMN5MNM3N3MN2M2N2MNMNMN2MN4MNMIMNMN4MN6MD3MIM2N15MN3MN2MNMN5MNMD2MNI3MN7MD3MN15MNI5MN9MNMN6MN5MN6M3IMNI2MNMD6MI2M4IMI8MN3MN2MN6MN4MD4M2I2MD4MD5MI3M2NMN9M25H mismatches: 97 - insertions: 19 - deletions: 9
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291399858
      XM_002716535
    • Hit length
      754 bp
    • E Value
      0E0
    • BLAST Score
      765.6 bits
    • Similarity
      86.43%
    • Coverage
      80.14%
    • Alignment (schematic)

      SEQ ID NO 5
      80.14% cov
      XM_002716535
      93.37% cov
    • Alignment Length
      715 bp
    • CIGAR string
      60H4MN2MN2MN36MN5MN8MN3MN19MN5MN20MN5MN2MN41MN32MD3MI2MN5MN44MN5MN2M2N10MN11MN17MN6MN4MN5MN2MN11M2N6MI2MD19MN11MN12MN19MN2MN5MN2MN5MN5MN11MND2MN2MI2MN17MN2MN2MN5MN6MNMI3MD11MN5MN5MN5MN5MN2MN5MN3MI5MND7MNM2N3MIMD2MN3D4MNI3MN3MNMIMNMN6MN4MN2MN2MN10MN7MN3MNMN5MN2MNMN3MN12MN5M2D7MI6MN11MN6M115H mismatches: 77 - insertions: 9 - deletions: 11
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301786628
      XM_002928682
    • Hit length
      906 bp
    • E Value
      0E0
    • BLAST Score
      760.1 bits
    • Similarity
      84.04%
    • Coverage
      90.69%
    • Alignment (schematic)

      SEQ ID NO 5
      90.69% cov
      XM_002928682
      89.29% cov
    • Alignment Length
      821 bp
    • CIGAR string
      57H7MN5MN27M2N7MN5MN8MN8MN14MN26MN2MN2MN2MN39MNMN20MN11MD3MI2MN5MN5MN11MN8MN5MN5MN5MN8M2N10MN11MN11MN5MN11MN6MNMN11M2N7MN8MN11MN24MD4MI15MN11MN2MN2MN8MN7MN6MN20MN2MN5MN2MN5MDMIMI2MD15MNM2N14MN2MN2MN2MN6MNMNMNMNMN5MNMI2MNMND3M2NI2MDMNMN2MN4MNMIMNMN4MN6MD3MIM2N15MN4MNMNMN5MNMD2MNI3MNMN4MN5MI6M2D7MI6MN9MN8MN6MN6MNI2MNMIMI6M2IM4I10MN3MN2MN6MN5MD3M2NMI4MD5MI3MN12M25H mismatches: 97 - insertions: 22 - deletions: 12
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296227982
      XM_002759551
    • Hit length
      1,148 bp
    • E Value
      0E0
    • BLAST Score
      758.2 bits
    • Similarity
      85.95%
    • Coverage
      81.95%
    • Alignment (schematic)

      SEQ ID NO 5
      81.95% cov
      XM_002759551
      62.46% cov
    • Alignment Length
      733 bp
    • CIGAR string
      57H7MN3MNMN3MN32MN5MN8MN23MN8MN17MN5MN2MN41MN11MN2MN4MN12MD3MI2MD4MNMI18MN19MN5MN8M2N6MN3MN11MN17MN8MN2MN6MNMN3MN7M2N2MN4MN20MN8MN15MN19MN17MN8MN9MNMN8MN14MN8MN2MN6MNMI2MD12MN2MN2MN14MN2MN2MN9M7DMDM3D3M2N4MN2M2N2MD3MNI2MN4MNMIMNMN11MN4M2N22MNMN5MN4MN3MN26MN5I5MI2MD9MN7MN5MN6M102H mismatches: 76 - insertions: 11 - deletions: 16
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
542
Type
DNA
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:148747336
      NM_152937
      1 of 4 hits reported for Rattus norvegicus.
    • Hit length
      716 bp
    • E Value
      0E0
    • BLAST Score
      677 bits
    • Similarity
      89.42%
    • Coverage
      99.08%
    • Alignment (schematic)

      SEQ ID NO 6
      99.08% cov
      NM_152937
      75% cov
    • Alignment Length
      539 bp
    • CIGAR string
      32MN4M2N3MNMN5MN3MN7MIMD3MN2MN14MN11MN17MN26MN30M3NMN15MN3MN14MN10MN2MN5MN14MN2MN6MN2MNMDMN2MIMN2M2NMN26MN11MN2MN17MN5MN11M2N7MN14MN8MN32MNMN10MN5MN12MN2MN5MN6MN3MN16MN8MN40M5H mismatches: 53 - insertions: 2 - deletions: 2
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:158508678
      NM_010175
      1 of 10 hits reported for Mus musculus.
    • Hit length
      2,871 bp
    • E Value
      0E0
    • BLAST Score
      660.4 bits
    • Similarity
      88.87%
    • Coverage
      99.08%
    • Alignment (schematic)

      SEQ ID NO 6
      99.08% cov
      NM_010175
      18.7% cov
    • Alignment Length
      539 bp
    • CIGAR string
      32MN4MN4MNMN5MN3MN7MN7MN6MN7MN29MN24MNMN20MN9M3NMN15MN3MN17MN10MN5MN14MN2MN12MN2MNMN2MD2MN2MI17MN6MN11MN2MN17MN5MN12MN7MN14MN2MN16MN12MN10MN10MIMD5MN11MN3MN4MNMN4MN3MN7MN8MN5MN2MN3MN5MN7MN22M5H mismatches: 56 - insertions: 2 - deletions: 2
  • Mus spretus

    Mus spretus

    • Public DB hit
      GI:217337605
      EU917072
    • Hit length
      618 bp
    • E Value
      0E0
    • BLAST Score
      651.1 bits
    • Similarity
      88.64%
    • Coverage
      98.71%
    • Alignment (schematic)

      SEQ ID NO 6
      98.71% cov
      EU917072
      86.57% cov
    • Alignment Length
      537 bp
    • CIGAR string
      2H30MN4MN4MNMN5MN3MN7MN7MN6MN7MN29MN24MNMN10MN9MN9M3N2MN14MN3MN17MN10MN5MN14MN2MN12MN2MNMN2MD2MN2MI17MN6MN11MN2MN17MN5MN12MN7MN14MN2MN16MN12MN10MN10MIMD5MN11MN3MN4MNMN4MN3MN7MN8MN5MN2MN3MN5MN7MN22M5H mismatches: 57 - insertions: 2 - deletions: 2
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
1,068
Type
DNA
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:25304097
      BC040079
      1 of 8 hits reported for Mus musculus.
    • Hit length
      1,133 bp
    • E Value
      0E0
    • BLAST Score
      1,458.1 bits
    • Similarity
      91.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      BC040079
      92.14% cov
    • Alignment Length
      1,071 bp
    • CIGAR string
      36MNM2N12MN13MN104MN8MN5MN11MN41MN17MN2MN2MN11MN26MN5MN3MN37MN35MN23MN11MN8MD4MI85MN26MN23MN13MN2MN13MN10M2D7MN14MN8MI3MD9MDMIMN4MN6MN2MN5MN2MN8M2N2MN33MN6MN15M2D2MN14MNMN8MN25MN3M3DM2D2MN4MN2MN9MN29MN9MN3MN6MN2MDMN17MN54MD6MDM4D2MDM7D26MN5MN3MNMN32M mismatches: 59 - insertions: 3 - deletions: 27
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:298900934
      FQ213638
      1 of 8 hits reported for Rattus norvegicus.
    • Hit length
      1,090 bp
    • E Value
      0E0
    • BLAST Score
      1,391.6 bits
    • Similarity
      90.57%
    • Coverage
      98.78%
    • Alignment (schematic)

      SEQ ID NO 7
      98.78% cov
      FQ213638
      96.42% cov
    • Alignment Length
      1,060 bp
    • CIGAR string
      33MN2MN2MN5MN6MN13MN56MN20MN26MN26MN41MN17MN5MN11MN26MN5MN3MN26MNMN8MN35MN23MN11MN20MN2MN74MN20MN20MN8MN13MN8MNMN5MN12M2D5MN9MN4MN6MNMI3MD7M2NDMIMN4MN3MN4M2N5MN2MNMN7M2N4MN30M2N5MN5MN12M2N6MN8MN2MN3MN2MN5MN9MN9MN4MN2MN3MN4MN18MN23MN2MN15MN2MNMDMN2MNM2N11MN2MN4MN46MD4MND2M2N2MDMD3MN36MN3MNM3I20M13H mismatches: 86 - insertions: 5 - deletions: 9
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:115430206
      NM_013232
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      1,151 bp
    • E Value
      0E0
    • BLAST Score
      937.4 bits
    • Similarity
      83.12%
    • Coverage
      98.5%
    • Alignment (schematic)

      SEQ ID NO 7
      98.5% cov
      NM_013232
      91.66% cov
    • Alignment Length
      1,078 bp
    • CIGAR string
      9MN8MN8MN5MI3MD8MN2MN3MN4MN2MN2MN8MN23MN6MN4MN23MN7M2N14MDMIMN5MN2MN2MN8MN17MN5MN5MN2MN11MN2MN8MN14MN2MN2MN2MN2MN17MN11MN8MN2MN2MN14MN8MN2MN11MN5MN2MN11MN26MN11MN2MD3MI8MN2MN5MN8MN2MN2MN2MN24MN13MN2MN11MN2MN32MN2MN2MN5MN2MN14MN7MN3MNI4MI2MI5MN4MD5MN4MN3MNMDMNM2D6MN2MNMIMN3MI2M2D5MNMN2MND2MI5MN2MN21MN3M2NMDMDMNDMNM3DMN8M2N14MN8MN3MN2MN2MN2MNMNI2M2NM3N5M2NMIMD3MN4MN2MN7MN4MN5MN4I9MN4MND3MNDMNMD2MDMN6MI8MDMI4M5I9MN9MN7M2N4MN4MDMN4MN19MI11MN9MN4MN32MN8MI18MN2MN12MNI4MNM2NMIM3N16M16H mismatches: 133 - insertions: 26 - deletions: 23
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332820818
      XM_527191
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,130 bp
    • E Value
      0E0
    • BLAST Score
      930 bits
    • Similarity
      83.46%
    • Coverage
      95.69%
    • Alignment (schematic)

      SEQ ID NO 7
      95.69% cov
      XM_527191
      90.53% cov
    • Alignment Length
      1,046 bp
    • CIGAR string
      9MN8MN8MN5MI3MD8MN2MN3MN4MN2MN2MN8MN23MN6MN4MN23MN7M2N14MDMIMN5MN2MN2MN8MN17MN5MN5MN2MN11MN2MN8MN13M2N2MN2MN2MN2MN17MN11MN8MN2MN17MN8MN2MN11MN5MN2MN11MN26MN11MN2MD3MI8MN2MN2MN2MN11MN2MN2MN24MN13MN2MN11MN2MN32MN2MN2MN5MN2MN14MN7MN3MNI4MI2MI5MN4MD5MN4MN3MNMDMNM2D6MN2MNMIMN3MI2M2D5MNMN2MND2MI5MN2MN21MN3M2NMDMDMNDMNM3DMN8M2N14MN8MN3MN2MN2MN2MNMNI2M2NM3N5M2NMIMD3MN4MN2MN7MN4MN5MN4I9MN4MND3MNDMNMD2MDMN6MI8MDMI4M5I9MN9MN7M2N4MN4MDMN4MN19MI11MN9MN4MN32MN8MI18MN2MN12M46H mismatches: 126 - insertions: 24 - deletions: 23
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332228064
      XM_003263162
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,134 bp
    • E Value
      0E0
    • BLAST Score
      930 bits
    • Similarity
      83.48%
    • Coverage
      95.69%
    • Alignment (schematic)

      SEQ ID NO 7
      95.69% cov
      XM_003263162
      90.21% cov
    • Alignment Length
      1,047 bp
    • CIGAR string
      3MN5MN17MN2MI6MD8MN2MN3MN4MN2MN2MN8MN30MN28MN2MN4M2N14MDMIMN5MN2MN2MN8MN17MN5MN5MN2MN11MN2MN8MN13M2N2MN2MNM2N2MN17MN2MN8MN8MN2MN2MN26MN11MN5MN2MN38MN11MN2MD3MN2MI5MN2MN5MN11MN2MN27MN13MN2MN11MN2MN14MN17MN2MN2MN5MN2MN14MN7MN3MNI4MI2MI3MNMN4MD4MIMD4MN3MNMDMNM2D9MNMIMN3MI2M2D5MNMN2MND2MI5MN2MN6MN6MN7MN3MNDMDMDM2DM3ND2MN8M2N14MN8MN3MN2MN2MN2MNMNI2M2N2M2N5M2NMIMD3MN4MN2MN7MN4MN5MN4I9MN4MND3MNDMNMD2MDMN6MI8MDMI4M5I9MN9MN7MN5MN4MN4MDMN14MN4MI21MN4MN32MN8MI18MN2MN12M46H mismatches: 124 - insertions: 25 - deletions: 24
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
2,482
Type
DNA
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157817958
      NM_001108516
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      2,404 bp
    • E Value
      0E0
    • BLAST Score
      3,075.8 bits
    • Similarity
      90.22%
    • Coverage
      95.65%
    • Alignment (schematic)

      SEQ ID NO 8
      95.65% cov
      NM_001108516
      98.67% cov
    • Alignment Length
      2,412 bp
    • CIGAR string
      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 mismatches: 158 - insertions: 38 - deletions: 40
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:261862331
      NM_011262
      1 of 11 hits reported for Mus musculus.
    • Hit length
      2,690 bp
    • E Value
      0E0
    • BLAST Score
      2,942.8 bits
    • Similarity
      89.24%
    • Coverage
      95.65%
    • Alignment (schematic)

      SEQ ID NO 8
      95.65% cov
      NM_011262
      88.22% cov
    • Alignment Length
      2,416 bp
    • CIGAR string
      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 mismatches: 175 - insertions: 42 - deletions: 43
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332250192
      XM_003274190
    • Hit length
      2,654 bp
    • E Value
      0E0
    • BLAST Score
      1,849.6 bits
    • Similarity
      88.44%
    • Coverage
      61.8%
    • Alignment (schematic)

      SEQ ID NO 8
      61.8% cov
      XM_003274190
      58.78% cov
    • Alignment Length
      1,575 bp
    • CIGAR string
      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 mismatches: 126 - insertions: 41 - deletions: 15
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332836881
      XM_003313127
    • Hit length
      2,731 bp
    • E Value
      0E0
    • BLAST Score
      1,845.9 bits
    • Similarity
      88.38%
    • Coverage
      61.8%
    • Alignment (schematic)

      SEQ ID NO 8
      61.8% cov
      XM_003313127
      57.2% cov
    • Alignment Length
      1,575 bp
    • CIGAR string
      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 mismatches: 129 - insertions: 41 - deletions: 13
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:332205883
      NM_006268
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      2,545 bp
    • E Value
      0E0
    • BLAST Score
      1,834.8 bits
    • Similarity
      88.42%
    • Coverage
      61.32%
    • Alignment (schematic)

      SEQ ID NO 8
      61.32% cov
      NM_006268
      60.9% cov
    • Alignment Length
      1,563 bp
    • CIGAR string
      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 mismatches: 127 - insertions: 41 - deletions: 13
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297267435
      XM_002808062
    • Hit length
      2,667 bp
    • E Value
      0E0
    • BLAST Score
      1,796.1 bits
    • Similarity
      87.81%
    • Coverage
      61.85%
    • Alignment (schematic)

      SEQ ID NO 8
      61.85% cov
      XM_002808062
      58.57% cov
    • Alignment Length
      1,575 bp
    • CIGAR string
      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 mismatches: 139 - insertions: 40 - deletions: 13
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
82
Type
peptide
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:23097354
      NP_690920
    • Hit length
      208 aa
    • E Value
      8.53E-33
    • BLAST Score
      144.1 bits
    • Similarity
      95%
    • Coverage
      97.56%
    • Alignment (schematic)

      SEQ ID NO 9
      97.56% cov
      NP_690920
      38.46% cov
    • Alignment Length
      80 aa
    • CIGAR string
      N18MN20M2N3MN5M2NMNMNMN21M2H mismatches: 10 - insertions: 0 - deletions: 0
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:26327281
      BAC27384
      1 of 4 hits reported for Mus musculus.
    • Hit length
      205 aa
    • E Value
      6.06E-32
    • BLAST Score
      141.4 bits
    • Similarity
      96.25%
    • Coverage
      97.56%
    • Alignment (schematic)

      SEQ ID NO 9
      97.56% cov
      BAC27384
      39.02% cov
    • Alignment Length
      80 aa
    • CIGAR string
      N18MN7MN5MN7MN3MNMN3MN2M3NMN9MN11M2H mismatches: 13 - insertions: 0 - deletions: 0
  • Mus spretus

    Mus spretus

    • Public DB hit
      GI:217337606
      ACK43162
    • Hit length
      205 aa
    • E Value
      8.46E-32
    • BLAST Score
      141 bits
    • Similarity
      96.25%
    • Coverage
      97.56%
    • Alignment (schematic)

      SEQ ID NO 9
      97.56% cov
      ACK43162
      39.02% cov
    • Alignment Length
      80 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335281368
      XP_003353785
      1 of 2 hits reported for Sus scrofa.
    • Hit length
      664 aa
    • E Value
      6.48E-30
    • BLAST Score
      134.4 bits
    • Similarity
      90.91%
    • Coverage
      93.9%
    • Alignment (schematic)

      SEQ ID NO 9
      93.9% cov
      XP_003353785
      11.6% cov
    • Alignment Length
      77 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194218579
      XP_001493662
    • Hit length
      197 aa
    • E Value
      3.56E-28
    • BLAST Score
      128.6 bits
    • Similarity
      91.14%
    • Coverage
      96.34%
    • Alignment (schematic)

      SEQ ID NO 9
      96.34% cov
      XP_001493662
      40.1% cov
    • Alignment Length
      79 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297687937
      XP_002821454
    • Hit length
      208 aa
    • E Value
      1.14E-27
    • BLAST Score
      127.1 bits
    • Similarity
      91.14%
    • Coverage
      96.34%
    • Alignment (schematic)

      SEQ ID NO 9
      96.34% cov
      XP_002821454
      37.98% cov
    • Alignment Length
      79 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73983559
      XP_854485
    • Hit length
      175 aa
    • E Value
      2.42E-27
    • BLAST Score
      125.9 bits
    • Similarity
      91.14%
    • Coverage
      96.34%
    • Alignment (schematic)

      SEQ ID NO 9
      96.34% cov
      XP_854485
      45.14% cov
    • Alignment Length
      79 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296219007
      XP_002755691
    • Hit length
      207 aa
    • E Value
      2.49E-27
    • BLAST Score
      125.9 bits
    • Similarity
      92.41%
    • Coverage
      96.34%
    • Alignment (schematic)

      SEQ ID NO 9
      96.34% cov
      XP_002755691
      38.16% cov
    • Alignment Length
      79 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:281344675
      EFB20259
    • Hit length
      190 aa
    • E Value
      2.7E-27
    • BLAST Score
      125.9 bits
    • Similarity
      89.74%
    • Coverage
      95.12%
    • Alignment (schematic)

      SEQ ID NO 9
      95.12% cov
      EFB20259
      41.05% cov
    • Alignment Length
      78 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114639023
      XP_508611
    • Hit length
      208 aa
    • E Value
      3.97E-27
    • BLAST Score
      125.2 bits
    • Similarity
      91.14%
    • Coverage
      96.34%
    • Alignment (schematic)

      SEQ ID NO 9
      96.34% cov
      XP_508611
      37.98% cov
    • Alignment Length
      79 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332257962
      XP_003278072
    • Hit length
      208 aa
    • E Value
      4.1E-27
    • BLAST Score
      125.2 bits
    • Similarity
      91.14%
    • Coverage
      96.34%
    • Alignment (schematic)

      SEQ ID NO 9
      96.34% cov
      XP_003278072
      37.98% cov
    • Alignment Length
      79 aa
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
253
Type
DNA
Locations
Undetermined

Declared organism:
Cricetulus griseus

Determined organism:
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:148747336
      NM_152937
      1 of 4 hits reported for Rattus norvegicus.
    • Hit length
      716 bp
    • E Value
      7.72E-85
    • BLAST Score
      322.4 bits
    • Similarity
      90.83%
    • Coverage
      94.86%
    • Alignment (schematic)

      SEQ ID NO 10
      94.86% cov
      NM_152937
      33.52% cov
    • Alignment Length
      240 bp
    • CIGAR string
      7H4MN11MN2MN17MN5MN11M2N7MN14MN8MN32MNMN10MN5MN12MN2MN5MN6MN3MN16MN8MN20MN19M6H mismatches: 22 - insertions: 0 - deletions: 0
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder

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