Patents
US 7041462 B2

Conformational And Topological Protein Regulation

  • Published: May 9, 2006
  • Earliest Priority: Dec 15 1999
  • Family: 19
  • Cited Works: 32
  • Cited by: 2
  • Cites: 2
  • Sequences: 5
  • Additional Info: Cited Works Full text
Granted Patent
US 7041462 B2
181-123-976-356-046
Data obtained from: EMBL-EBI Pat USPTO Fulltext NCBI GenBank
5 sequences found in this patent (in total)

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Download sequences in fasta format: 5 peptides

Displaying 5 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
27
Sequence Type
peptide
Locations
Undetermined
Declared organism
prion
Determined organism
  • Mesocricetus auratus

    Mesocricetus auratus

    • Public DB hit
      GI:130913
      P04273
    • Hit length
      254 aa
    • E Value
      1.37E-6
    • BLAST Score
      57 bits
    • Similarity
      96.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      P04273
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      11MN15M mismatches: 1 - insertions: 0 - deletions: 0
  • Microtus pennsylvanicus

    Microtus pennsylvanicus

    • Public DB hit
      GI:258640101
      ACV85680
      1 of 3 hits reported for Microtus pennsylvanicus.
    • Hit length
      254 aa
    • E Value
      3.53E-6
    • BLAST Score
      55.8 bits
    • Similarity
      92.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ACV85680
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      11MN2MN12M mismatches: 2 - insertions: 0 - deletions: 0
  • Mesocricetus brandti

    Mesocricetus brandti

    • Public DB hit
      GI:195973418
      ACG63357
    • Hit length
      246 aa
    • E Value
      3.53E-6
    • BLAST Score
      55.8 bits
    • Similarity
      96.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ACG63357
      10.98% cov
    • Alignment Length
      27 aa
    • CIGAR string
      5MN5MN15M mismatches: 2 - insertions: 0 - deletions: 0
  • Phodopus sungorus

    Phodopus sungorus

    • Public DB hit
      GI:195973416
      ACG63356
    • Hit length
      254 aa
    • E Value
      5.5E-6
    • BLAST Score
      55.1 bits
    • Similarity
      92.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ACG63356
      10.63% cov
    • Alignment Length
      27 aa
  • Phodopus campbelli

    Phodopus campbelli

    • Public DB hit
      GI:195973414
      ACG63355
    • Hit length
      254 aa
    • E Value
      5.5E-6
    • BLAST Score
      55.1 bits
    • Similarity
      92.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ACG63355
      10.63% cov
    • Alignment Length
      27 aa
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:3183140
      Q60506
    • Hit length
      254 aa
    • E Value
      6.03E-6
    • BLAST Score
      55.1 bits
    • Similarity
      92.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      Q60506
      10.63% cov
    • Alignment Length
      27 aa
  • Cricetulus migratorius

    Cricetulus migratorius

    • Public DB hit
      GI:3183139
      Q60468
    • Hit length
      254 aa
    • E Value
      6.61E-6
    • BLAST Score
      54.7 bits
    • Similarity
      92.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      Q60468
      10.63% cov
    • Alignment Length
      27 aa
  • Meriones unguiculatus

    Meriones unguiculatus

    • Public DB hit
      GI:4406467
      AAD19985
    • Hit length
      253 aa
    • E Value
      9.23E-6
    • BLAST Score
      54.3 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AAD19985
      10.67% cov
    • Alignment Length
      27 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:5281066
      AAD41440
      1 of 7 hits reported for Mus musculus.
    • Hit length
      254 aa
    • E Value
      9.46E-6
    • BLAST Score
      54.3 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AAD41440
      10.63% cov
    • Alignment Length
      27 aa
  • Acomys cahirinus

    Acomys cahirinus

    • Public DB hit
      GI:149345731
      ABR23643
    • Hit length
      245 aa
    • E Value
      1.26E-5
    • BLAST Score
      53.9 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ABR23643
      11.02% cov
    • Alignment Length
      27 aa
  • Myodes gapperi

    Myodes gapperi

    • Public DB hit
      GI:258640099
      ACV85679
    • Hit length
      255 aa
    • E Value
      1.31E-5
    • BLAST Score
      53.9 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ACV85679
      10.59% cov
    • Alignment Length
      27 aa
  • Peromyscus maniculatus

    Peromyscus maniculatus

    • Public DB hit
      GI:258640107
      ACV85683
    • Hit length
      254 aa
    • E Value
      1.64E-5
    • BLAST Score
      53.5 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ACV85683
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus leucopus

    Peromyscus leucopus

    • Public DB hit
      GI:258640109
      ACV85684
    • Hit length
      254 aa
    • E Value
      1.75E-5
    • BLAST Score
      53.5 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ACV85684
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon fulviventer

    Sigmodon fulviventer

    • Public DB hit
      GI:4406487
      AAD19995
    • Hit length
      254 aa
    • E Value
      1.89E-5
    • BLAST Score
      53.1 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AAD19995
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon hispidus

    Sigmodon hispidus

    • Public DB hit
      GI:17433173
      Q9Z0T3
    • Hit length
      254 aa
    • E Value
      1.89E-5
    • BLAST Score
      53.1 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      Q9Z0T3
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus polionotus

    Peromyscus polionotus

    • Public DB hit
      GI:149345710
      ABR23642
    • Hit length
      244 aa
    • E Value
      1.99E-5
    • BLAST Score
      53.1 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ABR23642
      11.07% cov
    • Alignment Length
      27 aa
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
2
Length
27
Sequence Type
peptide
Locations
Detailed Description
Declared organism
prion
Determined organism
  • Mesocricetus auratus

    Mesocricetus auratus

    • Public DB hit
      GI:130913
      P04273
    • Hit length
      254 aa
    • E Value
      2.92E-5
    • BLAST Score
      52.8 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      P04273
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      M2N8MN15M mismatches: 3 - insertions: 0 - deletions: 0
  • Microtus pennsylvanicus

    Microtus pennsylvanicus

    • Public DB hit
      GI:258640101
      ACV85680
      1 of 3 hits reported for Microtus pennsylvanicus.
    • Hit length
      254 aa
    • E Value
      7.68E-5
    • BLAST Score
      51.2 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACV85680
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      M2N8MN2MN12M mismatches: 4 - insertions: 0 - deletions: 0
  • Mesocricetus brandti

    Mesocricetus brandti

    • Public DB hit
      GI:195973418
      ACG63357
    • Hit length
      246 aa
    • E Value
      7.88E-5
    • BLAST Score
      51.2 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACG63357
      10.98% cov
    • Alignment Length
      27 aa
    • CIGAR string
      M2N2MN5MN15M mismatches: 4 - insertions: 0 - deletions: 0
  • Phodopus campbelli

    Phodopus campbelli

    • Public DB hit
      GI:195973414
      ACG63355
    • Hit length
      254 aa
    • E Value
      1.28E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACG63355
      10.63% cov
    • Alignment Length
      27 aa
  • Phodopus sungorus

    Phodopus sungorus

    • Public DB hit
      GI:195973416
      ACG63356
    • Hit length
      254 aa
    • E Value
      1.29E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACG63356
      10.63% cov
    • Alignment Length
      27 aa
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:3183140
      Q60506
    • Hit length
      254 aa
    • E Value
      1.29E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      Q60506
      10.63% cov
    • Alignment Length
      27 aa
  • Cricetulus migratorius

    Cricetulus migratorius

    • Public DB hit
      GI:3183139
      Q60468
    • Hit length
      254 aa
    • E Value
      1.42E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      Q60468
      10.63% cov
    • Alignment Length
      27 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:5281066
      AAD41440
      1 of 7 hits reported for Mus musculus.
    • Hit length
      254 aa
    • E Value
      2.29E-4
    • BLAST Score
      49.7 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAD41440
      10.63% cov
    • Alignment Length
      27 aa
  • Meriones unguiculatus

    Meriones unguiculatus

    • Public DB hit
      GI:4406467
      AAD19985
    • Hit length
      253 aa
    • E Value
      2.55E-4
    • BLAST Score
      49.7 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAD19985
      10.67% cov
    • Alignment Length
      27 aa
  • Myodes gapperi

    Myodes gapperi

    • Public DB hit
      GI:258640099
      ACV85679
    • Hit length
      255 aa
    • E Value
      3.02E-4
    • BLAST Score
      49.3 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACV85679
      10.59% cov
    • Alignment Length
      27 aa
  • Acomys cahirinus

    Acomys cahirinus

    • Public DB hit
      GI:149345731
      ABR23643
    • Hit length
      245 aa
    • E Value
      3.42E-4
    • BLAST Score
      49.3 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ABR23643
      11.02% cov
    • Alignment Length
      27 aa
  • Peromyscus maniculatus

    Peromyscus maniculatus

    • Public DB hit
      GI:258640107
      ACV85683
    • Hit length
      254 aa
    • E Value
      3.72E-4
    • BLAST Score
      48.9 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACV85683
      10.63% cov
    • Alignment Length
      27 aa
  • Ochotona princeps

    Ochotona princeps

    • Public DB hit
      GI:171473201
      ACB46953
    • Hit length
      252 aa
    • E Value
      3.75E-4
    • BLAST Score
      48.9 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACB46953
      10.71% cov
    • Alignment Length
      27 aa
  • Peromyscus leucopus

    Peromyscus leucopus

    • Public DB hit
      GI:258640109
      ACV85684
    • Hit length
      254 aa
    • E Value
      4.04E-4
    • BLAST Score
      48.9 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACV85684
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon fulviventer

    Sigmodon fulviventer

    • Public DB hit
      GI:4406487
      AAD19995
    • Hit length
      254 aa
    • E Value
      4.36E-4
    • BLAST Score
      48.9 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAD19995
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon hispidus

    Sigmodon hispidus

    • Public DB hit
      GI:17433173
      Q9Z0T3
    • Hit length
      254 aa
    • E Value
      4.36E-4
    • BLAST Score
      48.9 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      Q9Z0T3
      10.63% cov
    • Alignment Length
      27 aa
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
3
Length
27
Sequence Type
peptide
Locations
Detailed Description
Declared organism
prion
Determined organism
  • Mesocricetus auratus

    Mesocricetus auratus

    • Public DB hit
      GI:130913
      P04273
    • Hit length
      254 aa
    • E Value
      1.13E-5
    • BLAST Score
      53.9 bits
    • Similarity
      92.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      P04273
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      M2N8MN15M mismatches: 3 - insertions: 0 - deletions: 0
  • Microtus pennsylvanicus

    Microtus pennsylvanicus

    • Public DB hit
      GI:258640101
      ACV85680
      1 of 3 hits reported for Microtus pennsylvanicus.
    • Hit length
      254 aa
    • E Value
      2.94E-5
    • BLAST Score
      52.8 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ACV85680
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      M2N8MN2MN12M mismatches: 4 - insertions: 0 - deletions: 0
  • Mesocricetus brandti

    Mesocricetus brandti

    • Public DB hit
      GI:195973418
      ACG63357
    • Hit length
      246 aa
    • E Value
      3.04E-5
    • BLAST Score
      52.8 bits
    • Similarity
      92.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ACG63357
      10.98% cov
    • Alignment Length
      27 aa
    • CIGAR string
      M2N2MN5MN15M mismatches: 4 - insertions: 0 - deletions: 0
  • Phodopus sungorus

    Phodopus sungorus

    • Public DB hit
      GI:195973416
      ACG63356
    • Hit length
      254 aa
    • E Value
      4.81E-5
    • BLAST Score
      52 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ACG63356
      10.63% cov
    • Alignment Length
      27 aa
  • Phodopus campbelli

    Phodopus campbelli

    • Public DB hit
      GI:195973414
      ACG63355
    • Hit length
      254 aa
    • E Value
      4.9E-5
    • BLAST Score
      52 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ACG63355
      10.63% cov
    • Alignment Length
      27 aa
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:3183140
      Q60506
    • Hit length
      254 aa
    • E Value
      5.32E-5
    • BLAST Score
      52 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      Q60506
      10.63% cov
    • Alignment Length
      27 aa
  • Cricetulus migratorius

    Cricetulus migratorius

    • Public DB hit
      GI:3183139
      Q60468
    • Hit length
      254 aa
    • E Value
      5.74E-5
    • BLAST Score
      51.6 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      Q60468
      10.63% cov
    • Alignment Length
      27 aa
  • Meriones unguiculatus

    Meriones unguiculatus

    • Public DB hit
      GI:4406467
      AAD19985
    • Hit length
      253 aa
    • E Value
      9.79E-5
    • BLAST Score
      50.8 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAD19985
      10.67% cov
    • Alignment Length
      27 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:5281066
      AAD41440
      1 of 8 hits reported for Mus musculus.
    • Hit length
      254 aa
    • E Value
      9.87E-5
    • BLAST Score
      50.8 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAD41440
      10.63% cov
    • Alignment Length
      27 aa
  • Myodes gapperi

    Myodes gapperi

    • Public DB hit
      GI:258640099
      ACV85679
    • Hit length
      255 aa
    • E Value
      1.12E-4
    • BLAST Score
      50.8 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ACV85679
      10.59% cov
    • Alignment Length
      27 aa
  • Acomys cahirinus

    Acomys cahirinus

    • Public DB hit
      GI:149345731
      ABR23643
    • Hit length
      245 aa
    • E Value
      1.31E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ABR23643
      11.02% cov
    • Alignment Length
      27 aa
  • Peromyscus maniculatus

    Peromyscus maniculatus

    • Public DB hit
      GI:258640107
      ACV85683
    • Hit length
      254 aa
    • E Value
      1.55E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ACV85683
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus leucopus

    Peromyscus leucopus

    • Public DB hit
      GI:258640109
      ACV85684
    • Hit length
      254 aa
    • E Value
      1.7E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ACV85684
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon fulviventer

    Sigmodon fulviventer

    • Public DB hit
      GI:4406487
      AAD19995
    • Hit length
      254 aa
    • E Value
      1.78E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAD19995
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon hispidus

    Sigmodon hispidus

    • Public DB hit
      GI:17433173
      Q9Z0T3
    • Hit length
      254 aa
    • E Value
      1.78E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      Q9Z0T3
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus polionotus

    Peromyscus polionotus

    • Public DB hit
      GI:149345710
      ABR23642
    • Hit length
      244 aa
    • E Value
      1.88E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ABR23642
      11.07% cov
    • Alignment Length
      27 aa
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
4
Length
27
Sequence Type
peptide
Locations
Detailed Description
Declared organism
prion
Determined organism
  • Mesocricetus auratus

    Mesocricetus auratus

    • Public DB hit
      GI:130913
      P04273
    • Hit length
      254 aa
    • E Value
      3.78E-5
    • BLAST Score
      52.4 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      P04273
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      3M2N6MN15M mismatches: 3 - insertions: 0 - deletions: 0
  • Mesocricetus brandti

    Mesocricetus brandti

    • Public DB hit
      GI:195973418
      ACG63357
    • Hit length
      246 aa
    • E Value
      9.79E-5
    • BLAST Score
      50.8 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACG63357
      10.98% cov
    • Alignment Length
      27 aa
    • CIGAR string
      3M3N5MN15M mismatches: 4 - insertions: 0 - deletions: 0
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:200527
      AAA39996
      1 of 7 hits reported for Mus musculus.
    • Hit length
      254 aa
    • E Value
      1.18E-4
    • BLAST Score
      50.8 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAA39996
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      3M2N6MNMN13M mismatches: 4 - insertions: 0 - deletions: 0
  • Microtus pennsylvanicus

    Microtus pennsylvanicus

    • Public DB hit
      GI:258640101
      ACV85680
      1 of 3 hits reported for Microtus pennsylvanicus.
    • Hit length
      254 aa
    • E Value
      1.26E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACV85680
      10.63% cov
    • Alignment Length
      27 aa
  • Meriones unguiculatus

    Meriones unguiculatus

    • Public DB hit
      GI:4406467
      AAD19985
    • Hit length
      253 aa
    • E Value
      1.55E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAD19985
      10.67% cov
    • Alignment Length
      27 aa
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:3183140
      Q60506
    • Hit length
      254 aa
    • E Value
      1.61E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      Q60506
      10.63% cov
    • Alignment Length
      27 aa
  • Cricetulus migratorius

    Cricetulus migratorius

    • Public DB hit
      GI:3183139
      Q60468
    • Hit length
      254 aa
    • E Value
      1.74E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      Q60468
      10.63% cov
    • Alignment Length
      27 aa
  • Acomys cahirinus

    Acomys cahirinus

    • Public DB hit
      GI:149345731
      ABR23643
    • Hit length
      245 aa
    • E Value
      1.8E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ABR23643
      11.02% cov
    • Alignment Length
      27 aa
  • Phodopus sungorus

    Phodopus sungorus

    • Public DB hit
      GI:195973416
      ACG63356
    • Hit length
      254 aa
    • E Value
      2.09E-4
    • BLAST Score
      49.7 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACG63356
      10.63% cov
    • Alignment Length
      27 aa
  • Phodopus campbelli

    Phodopus campbelli

    • Public DB hit
      GI:195973414
      ACG63355
    • Hit length
      254 aa
    • E Value
      2.14E-4
    • BLAST Score
      49.7 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACG63355
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon fulviventer

    Sigmodon fulviventer

    • Public DB hit
      GI:4406487
      AAD19995
    • Hit length
      254 aa
    • E Value
      2.49E-4
    • BLAST Score
      49.7 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAD19995
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon hispidus

    Sigmodon hispidus

    • Public DB hit
      GI:17433173
      Q9Z0T3
    • Hit length
      254 aa
    • E Value
      2.49E-4
    • BLAST Score
      49.7 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      Q9Z0T3
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus maniculatus

    Peromyscus maniculatus

    • Public DB hit
      GI:258640107
      ACV85683
    • Hit length
      254 aa
    • E Value
      2.9E-4
    • BLAST Score
      49.3 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACV85683
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus leucopus

    Peromyscus leucopus

    • Public DB hit
      GI:258640109
      ACV85684
    • Hit length
      254 aa
    • E Value
      2.99E-4
    • BLAST Score
      49.3 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACV85684
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus polionotus

    Peromyscus polionotus

    • Public DB hit
      GI:149345710
      ABR23642
    • Hit length
      244 aa
    • E Value
      3.12E-4
    • BLAST Score
      49.3 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ABR23642
      11.07% cov
    • Alignment Length
      27 aa
  • Myodes gapperi

    Myodes gapperi

    • Public DB hit
      GI:258640099
      ACV85679
    • Hit length
      255 aa
    • E Value
      3.48E-4
    • BLAST Score
      49.3 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACV85679
      10.59% cov
    • Alignment Length
      27 aa
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
5
Length
27
Sequence Type
peptide
Locations
Detailed Description
Declared organism
prion
Determined organism
  • Mesocricetus auratus

    Mesocricetus auratus

    • Public DB hit
      GI:130913
      P04273
    • Hit length
      254 aa
    • E Value
      2.73E-5
    • BLAST Score
      52.8 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P04273
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      3M2N6MN15M mismatches: 3 - insertions: 0 - deletions: 0
  • Mesocricetus brandti

    Mesocricetus brandti

    • Public DB hit
      GI:195973418
      ACG63357
    • Hit length
      246 aa
    • E Value
      7.43E-5
    • BLAST Score
      51.2 bits
    • Similarity
      88.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ACG63357
      10.98% cov
    • Alignment Length
      27 aa
    • CIGAR string
      3M3N5MN15M mismatches: 4 - insertions: 0 - deletions: 0
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:200527
      AAA39996
      1 of 7 hits reported for Mus musculus.
    • Hit length
      254 aa
    • E Value
      8.14E-5
    • BLAST Score
      51.2 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AAA39996
      10.63% cov
    • Alignment Length
      27 aa
    • CIGAR string
      3M2N6MNMN13M mismatches: 4 - insertions: 0 - deletions: 0
  • Microtus pennsylvanicus

    Microtus pennsylvanicus

    • Public DB hit
      GI:258640101
      ACV85680
      1 of 3 hits reported for Microtus pennsylvanicus.
    • Hit length
      254 aa
    • E Value
      9E-5
    • BLAST Score
      51.2 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ACV85680
      10.63% cov
    • Alignment Length
      27 aa
  • Meriones unguiculatus

    Meriones unguiculatus

    • Public DB hit
      GI:4406467
      AAD19985
    • Hit length
      253 aa
    • E Value
      9.7E-5
    • BLAST Score
      50.8 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AAD19985
      10.67% cov
    • Alignment Length
      27 aa
  • Acomys cahirinus

    Acomys cahirinus

    • Public DB hit
      GI:149345731
      ABR23643
    • Hit length
      245 aa
    • E Value
      1.18E-4
    • BLAST Score
      50.8 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ABR23643
      11.02% cov
    • Alignment Length
      27 aa
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:3183140
      Q60506
    • Hit length
      254 aa
    • E Value
      1.25E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      Q60506
      10.63% cov
    • Alignment Length
      27 aa
  • Cricetulus migratorius

    Cricetulus migratorius

    • Public DB hit
      GI:3183139
      Q60468
    • Hit length
      254 aa
    • E Value
      1.33E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      Q60468
      10.63% cov
    • Alignment Length
      27 aa
  • Phodopus sungorus

    Phodopus sungorus

    • Public DB hit
      GI:195973416
      ACG63356
    • Hit length
      254 aa
    • E Value
      1.45E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ACG63356
      10.63% cov
    • Alignment Length
      27 aa
  • Phodopus campbelli

    Phodopus campbelli

    • Public DB hit
      GI:195973414
      ACG63355
    • Hit length
      254 aa
    • E Value
      1.5E-4
    • BLAST Score
      50.4 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ACG63355
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon fulviventer

    Sigmodon fulviventer

    • Public DB hit
      GI:4406487
      AAD19995
    • Hit length
      254 aa
    • E Value
      1.68E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AAD19995
      10.63% cov
    • Alignment Length
      27 aa
  • Sigmodon hispidus

    Sigmodon hispidus

    • Public DB hit
      GI:17433173
      Q9Z0T3
    • Hit length
      254 aa
    • E Value
      1.68E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      Q9Z0T3
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus maniculatus

    Peromyscus maniculatus

    • Public DB hit
      GI:258640107
      ACV85683
    • Hit length
      254 aa
    • E Value
      1.94E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ACV85683
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus leucopus

    Peromyscus leucopus

    • Public DB hit
      GI:258640109
      ACV85684
    • Hit length
      254 aa
    • E Value
      1.99E-4
    • BLAST Score
      50.1 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ACV85684
      10.63% cov
    • Alignment Length
      27 aa
  • Peromyscus polionotus

    Peromyscus polionotus

    • Public DB hit
      GI:149345710
      ABR23642
    • Hit length
      244 aa
    • E Value
      2.14E-4
    • BLAST Score
      49.7 bits
    • Similarity
      85.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ABR23642
      11.07% cov
    • Alignment Length
      27 aa
  • Myodes gapperi

    Myodes gapperi

    • Public DB hit
      GI:258640099
      ACV85679
    • Hit length
      255 aa
    • E Value
      2.39E-4
    • BLAST Score
      49.7 bits
    • Similarity
      81.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ACV85679
      10.59% cov
    • Alignment Length
      27 aa
Occurrence
10 times in PatSeqDB
Tools

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