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Search for Biological Sequences disclosed in Patents

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Data obtained from: USPTO Fulltext
21 sequences found in this patent (in total)

Displaying 1 - 10 of 21 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
6,402
Type
nucleotide
Locations
Detailed Description

Declared organism:
Sus scrofa

Determined organism:
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:47523421
      NM_214167
      1 of 2 hits reported for Sus scrofa.
    • Hit length
      6,539 bp
    • E Value
      0E0
    • BLAST Score
      11,812.3 bits
    • Similarity
      99.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_214167
      97.9% cov
    • Alignment Length
      6,402 bp
    • CIGAR string
      2529M2N3871M mismatches: 2 - insertions: 0 - deletions: 0
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149758953
      XM_001498904
    • Hit length
      6,996 bp
    • E Value
      0E0
    • BLAST Score
      2,852.3 bits
    • Similarity
      86.49%
    • Coverage
      40.75%
    • Alignment (schematic)

      SEQ ID NO 1
      40.75% cov
      XM_001498904
      37.38% cov
    • Alignment Length
      2,635 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:224458397
      NM_001145508
      1 of 3 hits reported for Bos taurus.
    • Hit length
      7,979 bp
    • E Value
      0E0
    • BLAST Score
      2,778.5 bits
    • Similarity
      86.26%
    • Coverage
      40.6%
    • Alignment (schematic)

      SEQ ID NO 1
      40.6% cov
      NM_001145508
      32.35% cov
    • Alignment Length
      2,635 bp
  • Ovis aries

    Ovis aries

    • Public DB hit
      GI:289191357
      NM_001172550
    • Hit length
      7,476 bp
    • E Value
      0E0
    • BLAST Score
      2,688 bits
    • Similarity
      85.64%
    • Coverage
      40.57%
    • Alignment (schematic)

      SEQ ID NO 1
      40.57% cov
      NM_001172550
      34.54% cov
    • Alignment Length
      2,633 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:2645492
      AF016234
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      7,032 bp
    • E Value
      0E0
    • BLAST Score
      2,599.4 bits
    • Similarity
      84.96%
    • Coverage
      40.75%
    • Alignment (schematic)

      SEQ ID NO 1
      40.75% cov
      AF016234
      36.89% cov
    • Alignment Length
      2,647 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260613
      XM_003279331
    • Hit length
      9,081 bp
    • E Value
      0E0
    • BLAST Score
      2,492.3 bits
    • Similarity
      84.91%
    • Coverage
      38.86%
    • Alignment (schematic)

      SEQ ID NO 1
      38.86% cov
      XM_003279331
      27.43% cov
    • Alignment Length
      2,519 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862035
      XM_003317789
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      9,066 bp
    • E Value
      0E0
    • BLAST Score
      2,475.6 bits
    • Similarity
      84.8%
    • Coverage
      38.86%
    • Alignment (schematic)

      SEQ ID NO 1
      38.86% cov
      XM_003317789
      27.48% cov
    • Alignment Length
      2,519 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:192448441
      NM_000132
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      9,048 bp
    • E Value
      0E0
    • BLAST Score
      2,475.6 bits
    • Similarity
      84.8%
    • Coverage
      38.86%
    • Alignment (schematic)

      SEQ ID NO 1
      38.86% cov
      NM_000132
      27.53% cov
    • Alignment Length
      2,520 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:187252538
      BC166700
    • Hit length
      7,117 bp
    • E Value
      0E0
    • BLAST Score
      2,475.6 bits
    • Similarity
      84.8%
    • Coverage
      38.86%
    • Alignment (schematic)

      SEQ ID NO 1
      38.86% cov
      BC166700
      35% cov
    • Alignment Length
      2,520 bp
Occurrence
22 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
2,133
Type
peptide
Locations
Detailed Description, Drawings

Declared organism:
Sus scrofa

Determined organism:
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:47523422
      NP_999332
    • Hit length
      2,133 aa
    • E Value
      0E0
    • BLAST Score
      4,445.2 bits
    • Similarity
      99.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_999332
      100% cov
    • Alignment Length
      2,133 aa
    • CIGAR string
      843MN1289M mismatches: 1 - insertions: 0 - deletions: 0
  • Ovis aries

    Ovis aries

    • Public DB hit
      GI:289191358
      NP_001166021
    • Hit length
      2,254 aa
    • E Value
      0E0
    • BLAST Score
      3,180.6 bits
    • Similarity
      78.64%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001166021
      100% cov
    • Alignment Length
      2,275 aa
Occurrence
23 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
4,404
Type
nucleotide
Locations
Undetermined

Declared organism:
Sus scrofa

Determined organism:
Occurrence
36 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
1,467
Type
peptide
Locations
Undetermined

Declared organism:
Sus scrofa

Determined organism:
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:157863686
      ABV90867
    • Hit length
      1,457 aa
    • E Value
      0E0
    • BLAST Score
      2,607 bits
    • Similarity
      90.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ABV90867
      100% cov
    • Alignment Length
      1,468 aa
    • CIGAR string
      2MN5MN5M3N3MN14MN2MNMDN2MN2MN3M3NM3NM3N2MN4MN6MN2M2NMN22MN18MN2MN6MNMN11MN2MNMN12MN4MN32M2NMN2MN2MNMN14M4NM5NMNMN3MNMN19MN12MN16MN10MN7MN16MNMN4MNMNMN2MN6MNM2N2MI5MNMN2MN5MNMNM4N19MN10MNM2NMN6MN3MN11MN2MN4MN5MN2M2N23MN15M2NM3N2MN2MN5MN6MN27M2NMNMN24MN16MN4MN10MNMNM2N37MN46MN7MN11MN3M3N4M3N4M3N3M2NMN6MN2M10D4MN4MNM3NMNM6N4M2NMNMNMN6MN5MN6MN10MN7MN2M2N6MNMN2MN6MN2MN7MN6MN21MN16M2N2MN6MN3MN4MN13MN29MNM2N4MN29MN8M2N6MN12MN11MN26MN10MN17MN4MN8MN5MN5M2N2MN7MN34MNMN16MN24M2N2MN17MN12MN35M2N5MN6M3NMN7MN8MN5MNM4N6MN3MN4MN9MN8MN6M2N4MNMNM2N9MN5MN5MN8MN2M3N4MN11M mismatches: 229 - insertions: 1 - deletions: 11
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:66773789
      O18806
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      2,343 aa
    • E Value
      0E0
    • BLAST Score
      1,359.4 bits
    • Similarity
      81.75%
    • Coverage
      60.8%
    • Alignment (schematic)

      SEQ ID NO 4
      60.8% cov
      O18806
      37.35% cov
    • Alignment Length
      893 aa
Occurrence
49 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
9,009
Type
nucleotide
Locations
Undetermined

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:182802
      K01740
      1 of 12 hits reported for Homo sapiens.
    • Hit length
      9,009 bp
    • E Value
      0E0
    • BLAST Score
      16,637.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      K01740
      100% cov
    • Alignment Length
      9,009 bp
    • CIGAR string
      9009M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862035
      XM_003317789
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      9,066 bp
    • E Value
      0E0
    • BLAST Score
      16,323.7 bits
    • Similarity
      99.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_003317789
      99.39% cov
    • Alignment Length
      9,013 bp
    • CIGAR string
      8MI9MI337MN18MN219MN107MN368MN122MN1010MN59MN285MN148MN27MN49MN228MN266MN3MN161MN34MN16MN35MN277MN195MN23MN13MN340MN238MN37MN131MN46MN294MN78MN322MN81MN62MN209MN1044MN82MN224MN36MN281MN48MN34MN16MN93MN74MN59MN74MI72MI142MN206MN57MD25MD68MN15MNMN107MN343M mismatches: 51 - insertions: 4 - deletions: 2
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260613
      XM_003279331
    • Hit length
      9,081 bp
    • E Value
      0E0
    • BLAST Score
      15,417 bits
    • Similarity
      97.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_003279331
      99.39% cov
    • Alignment Length
      9,040 bp
    • CIGAR string
      3MN4MI3MN5MI49M2D29MN170MN19M2N23MN40MN18MN48MN29MN140MN33MN136MN27MN400MN155MN44MN4MN12MN134MN218MN48MN43MN350MN53MN123MN161MN56MN4MN115MN34MN10MN100MN35MN7MN9MN65MN134MN41MN96MN17MN12MN13MN9MN74MN74MN16MN31MNI2MND29MN123MN8MN19MN6MN87MN17MN3MN134MN38MN78MN2MN23MN29MN4MN15MN71MN29MN10MN66MN8MN27MN37MN42MN4MN60MN9MN53MN25M3I35M2N8MN60MN2MN8MN5MN52MN46MN57MN182MN19MN50MN12MN48MN38MN88MN194MN72MN4MN66MN170MN38MN240MN26MN64MN2MN8MN29MN65MN204MN139MN167MN90MN25MN30MN25MN111MN67MN33MN10MN57MNMN25MN17MNMN21MN22MN53MNMN61MN25MN23MN23MD2MI8MN13MN34MN16MN14MN16MN34MN6MN3MN11MN2MN16MNM2N97MN27MN15MN37M2IMIM3IMI2MIM5IM8IMI3MI26MN40MD2M2D45MN44MI12MN107MD3MD5MN6MN19MN4MN38MD18MN4M2N32MN18MN38MD25MD68MN5MN9MNMN16MN122M2D28MN5MN86MN46MN8MN9MN2MN4MN10MN6MN27MN16MN12MN38M mismatches: 178 - insertions: 31 - deletions: 14
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:187252538
      BC166700
    • Hit length
      7,117 bp
    • E Value
      0E0
    • BLAST Score
      13,020 bits
    • Similarity
      99.96%
    • Coverage
      78.37%
    • Alignment (schematic)

      SEQ ID NO 5
      78.37% cov
      BC166700
      99.19% cov
    • Alignment Length
      7,060 bp
    • CIGAR string
      149H224MN3555MN3274MD4M1800H mismatches: 2 - insertions: 0 - deletions: 1
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711476
      XM_002832327
    • Hit length
      7,172 bp
    • E Value
      0E0
    • BLAST Score
      12,427.2 bits
    • Similarity
      98.46%
    • Coverage
      78.28%
    • Alignment (schematic)

      SEQ ID NO 5
      78.28% cov
      XM_002832327
      98.45% cov
    • Alignment Length
      7,064 bp
    • CIGAR string
      4MI4M2I9MI27MN5MI6MN9MI71MN5MN25MN23MN6MN26M2I13MI48MN24MN40MN18MN48MN29MN83MN56MN178MN19MN363MN36MN212MNMN4MN116MN182MN4MN96MN448MN88MN9MN24MN79MN18MN62MN30MN101MN31MN47MN231MN107MN207MN2MN9MN23MN13MN17MN93MN16MN35MN29MN41MN74MN130MN23MN171MN81MN10MN42MN92MN116MN36M2IMI28MN29MN17MN15MN35MN133MN9MN63MN67MN12MN33MN57MN102MN14MN13MN70MN50MN12MN48MN5MN25MD2MDMD107MN79MN97MN144MN170MN38MN240MN91MN41MN34MN153MN455MN24MN49MN32MN35M1957H mismatches: 94 - insertions: 12 - deletions: 3
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305137
      XM_002806460
    • Hit length
      6,660 bp
    • E Value
      0E0
    • BLAST Score
      9,156.8 bits
    • Similarity
      96.58%
    • Coverage
      61.32%
    • Alignment (schematic)

      SEQ ID NO 5
      61.32% cov
      XM_002806460
      82.97% cov
    • Alignment Length
      5,530 bp
    • CIGAR string
      5MN2MI9MI13MN7M2N41MN17MN23MN15MN4MN27MN105MN9MN24MN25MN14MN18MN33MN14MN8MN20MN62MN77MN65MN17MN38MN75MN78MN60MN26MN98MN14MN30MN85MN2MN63MN123MN17MN12MN39MN83MN262MN15MN124MN13MN47MN76MN130MN53MN123MN31MN8MN27MN34MIMD46MN9MN4MN21MN62MN45MN8MN3MN3MN11MN12MN34MN3MN38MN15MN3MN7MN12MN28MN13MN8MN29MN3MN14MN20MNMN23MN21MN82MN29MN74MN64MN43MN5MN3MN36M2N9MN46MN23MD5MI12MNMN10MN16MN20MN13M2N29MN8MN15MN4MNMN3MIMD19MN35MN24MN10M2N16MN100MD3MI18MN3MN138MN24MN4M2N12MN28MN36MN2M2N22MN3MN6MN18MN59MN10MN2MN26MN14MN41MN29MN21MN64M2N30MN5MN10MN2MN4MN49MN24MN19MN29MN9MN14MN24MN2M2N8MN7MN36MN18MN8MN10MN25MN21MN12MN11MN8MN12MN15MN27MN92MN30MN8MN17MN21MN7MN5MN29MN43MN6MN12MN2MN45MN37MN70MN25MN5MN172M3485H mismatches: 179 - insertions: 6 - deletions: 4
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:2645492
      AF016234
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      7,032 bp
    • E Value
      0E0
    • BLAST Score
      7,123.6 bits
    • Similarity
      85.21%
    • Coverage
      78.11%
    • Alignment (schematic)

      SEQ ID NO 5
      78.11% cov
      AF016234
      99.73% cov
    • Alignment Length
      7,142 bp
Occurrence
69 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
2,351
Type
peptide
Locations
Detailed Description, Drawings

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:182803
      AAA52484
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      2,351 aa
    • E Value
      0E0
    • BLAST Score
      4,917.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AAA52484
      100% cov
    • Alignment Length
      2,351 aa
    • CIGAR string
      2351M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862036
      XP_003317837
    • Hit length
      2,351 aa
    • E Value
      0E0
    • BLAST Score
      4,885.1 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_003317837
      100% cov
    • Alignment Length
      2,351 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260614
      XP_003279379
    • Hit length
      2,352 aa
    • E Value
      0E0
    • BLAST Score
      4,772.6 bits
    • Similarity
      98.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_003279379
      100% cov
    • Alignment Length
      2,352 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711477
      XP_002832373
    • Hit length
      2,320 aa
    • E Value
      0E0
    • BLAST Score
      4,673.6 bits
    • Similarity
      98.39%
    • Coverage
      97.87%
    • Alignment (schematic)

      SEQ ID NO 6
      97.87% cov
      XP_002832373
      99.22% cov
    • Alignment Length
      2,303 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296236787
      XP_002807971
    • Hit length
      2,250 aa
    • E Value
      0E0
    • BLAST Score
      4,206 bits
    • Similarity
      90.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002807971
      100% cov
    • Alignment Length
      2,352 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305138
      XP_002806506
    • Hit length
      2,152 aa
    • E Value
      0E0
    • BLAST Score
      4,172.1 bits
    • Similarity
      95.53%
    • Coverage
      91.28%
    • Alignment (schematic)

      SEQ ID NO 6
      91.28% cov
      XP_002806506
      98.75% cov
    • Alignment Length
      2,146 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149758954
      XP_001498954
    • Hit length
      2,331 aa
    • E Value
      0E0
    • BLAST Score
      3,887.8 bits
    • Similarity
      87.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001498954
      100% cov
    • Alignment Length
      2,359 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:284005234
      NP_001164742
    • Hit length
      2,336 aa
    • E Value
      0E0
    • BLAST Score
      3,842 bits
    • Similarity
      87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_001164742
      100% cov
    • Alignment Length
      2,361 aa
  • Rhinolophus ferrumequinum

    Rhinolophus ferrumequinum

    • Public DB hit
      GI:184185514
      ACC68917
    • Hit length
      2,352 aa
    • E Value
      0E0
    • BLAST Score
      3,811.2 bits
    • Similarity
      86.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ACC68917
      100% cov
    • Alignment Length
      2,359 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:66773789
      O18806
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      2,343 aa
    • E Value
      0E0
    • BLAST Score
      3,734.5 bits
    • Similarity
      85.4%
    • Coverage
      99.87%
    • Alignment (schematic)

      SEQ ID NO 6
      99.87% cov
      O18806
      99.87% cov
    • Alignment Length
      2,356 aa
Occurrence
103 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
6,996
Type
nucleotide
Locations
Undetermined

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:182802
      K01740
      1 of 12 hits reported for Homo sapiens.
    • Hit length
      9,009 bp
    • E Value
      0E0
    • BLAST Score
      12,920.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      K01740
      77.66% cov
    • Alignment Length
      6,996 bp
    • CIGAR string
      6996M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:187252538
      BC166700
    • Hit length
      7,117 bp
    • E Value
      0E0
    • BLAST Score
      12,909.2 bits
    • Similarity
      99.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      BC166700
      98.3% cov
    • Alignment Length
      6,996 bp
    • CIGAR string
      166MN3555MN3273M mismatches: 2 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862035
      XM_003317789
    • Hit length
      9,066 bp
    • E Value
      0E0
    • BLAST Score
      12,720.8 bits
    • Similarity
      99.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003317789
      77.17% cov
    • Alignment Length
      6,996 bp
    • CIGAR string
      147MN18MN219MN107MN368MN122MN1010MN59MN285MN148MN27MN49MN228MN266MN3MN161MN34MN16MN35MN277MN195MN23MN13MN340MN238MN37MN131MN46MN294MN78MN322MN81MN62MN209MN1044MN82MN186M mismatches: 36 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260613
      XM_003279331
    • Hit length
      9,081 bp
    • E Value
      0E0
    • BLAST Score
      12,262.9 bits
    • Similarity
      98.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003279331
      77.07% cov
    • Alignment Length
      7,000 bp
    • CIGAR string
      61MN19M2N23MN40MN18MN48MN29MN140MN33MN136MN27MN400MN155MN44MN4MN12MN134MN218MN48MN43MN350MN53MN123MN161MN56MN4MN115MN34MN10MN100MN35MN7MN9MN65MN134MN41MN96MN17MN12MN13MN9MN74MN74MN16MN31MNI2MND29MN123MN8MN19MN6MN87MN17MN3MN134MN38MN78MN2MN23MN29MN4MN15MN71MN29MN10MN66MN8MN27MN37MN42MN4MN60MN9MN53MN25M3I35M2N8MN60MN2MN8MN5MN52MN46MN57MN182MN19MN50MN12MN48MN38MN88MN194MN72MN4MN66MN170MN38MN240MN26MN64MN2MN8MN29MN65MN204MN139MN167MN90MN25MN30MN25MN111MN67MN6M mismatches: 114 - insertions: 4 - deletions: 1
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711476
      XM_002832327
    • Hit length
      7,172 bp
    • E Value
      0E0
    • BLAST Score
      12,111.4 bits
    • Similarity
      98.6%
    • Coverage
      97.84%
    • Alignment (schematic)

      SEQ ID NO 7
      97.84% cov
      XM_002832327
      95.48% cov
    • Alignment Length
      6,851 bp
    • CIGAR string
      20M2I13MI48MN24MN40MN18MN48MN29MN83MN56MN178MN19MN363MN36MN212MNMN4MN116MN182MN4MN96MN448MN88MN9MN24MN79MN18MN62MN30MN101MN31MN47MN231MN107MN207MN2MN9MN23MN13MN17MN93MN16MN35MN29MN41MN74MN130MN23MN171MN81MN10MN42MN92MN116MN36M2IMI28MN29MN17MN15MN35MN133MN9MN63MN67MN12MN33MN57MN102MN14MN13MN70MN50MN12MN48MN5MN25MD2MDMD107MN79MN97MN144MN170MN38MN240MN91MN41MN34MN153MN455MN24MN49MN32MN35M151H mismatches: 87 - insertions: 6 - deletions: 3
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305137
      XM_002806460
    • Hit length
      6,660 bp
    • E Value
      0E0
    • BLAST Score
      8,839.2 bits
    • Similarity
      96.67%
    • Coverage
      76%
    • Alignment (schematic)

      SEQ ID NO 7
      76% cov
      XM_002806460
      79.83% cov
    • Alignment Length
      5,321 bp
    • CIGAR string
      71MN9MN24MN25MN14MN18MN33MN14MN8MN20MN62MN77MN65MN17MN38MN75MN78MN60MN26MN98MN14MN30MN85MN2MN63MN123MN17MN12MN39MN83MN262MN15MN124MN13MN47MN76MN130MN53MN123MN31MN8MN27MN34MIMD46MN9MN4MN21MN62MN45MN8MN3MN3MN11MN12MN34MN3MN38MN15MN3MN7MN12MN28MN13MN8MN29MN3MN14MN20MNMN23MN21MN82MN29MN74MN64MN43MN5MN3MN36M2N9MN46MN23MD5MI12MNMN10MN16MN20MN13M2N29MN8MN15MN4MNMN3MIMD19MN35MN24MN10M2N16MN100MD3MI18MN3MN138MN24MN4M2N12MN28MN36MN2M2N22MN3MN6MN18MN59MN10MN2MN26MN14MN41MN29MN21MN64M2N30MN5MN10MN2MN4MN49MN24MN19MN29MN9MN14MN24MN2M2N8MN7MN36MN18MN8MN10MN25MN21MN12MN11MN8MN12MN15MN27MN92MN30MN8MN17MN21MN7MN5MN29MN43MN6MN12MN2MN45MN37MN70MN25MN5MN172M1679H mismatches: 169 - insertions: 4 - deletions: 4
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:2645492
      AF016234
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      7,032 bp
    • E Value
      0E0
    • BLAST Score
      7,057.2 bits
    • Similarity
      85.19%
    • Coverage
      99.77%
    • Alignment (schematic)

      SEQ ID NO 7
      99.77% cov
      AF016234
      98.92% cov
    • Alignment Length
      7,085 bp
Occurrence
53 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
2,319
Type
peptide
Locations
Detailed Description, Drawings

Declared organism:
Mus musculus

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:544272
      Q06194
      1 of 4 hits reported for Mus musculus.
    • Hit length
      2,319 aa
    • E Value
      0E0
    • BLAST Score
      4,852.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      Q06194
      100% cov
    • Alignment Length
      2,319 aa
    • CIGAR string
      2319M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862036
      XP_003317837
    • Hit length
      2,351 aa
    • E Value
      0E0
    • BLAST Score
      3,476 bits
    • Similarity
      82.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_003317837
      100% cov
    • Alignment Length
      2,361 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4503647
      NP_000123
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      2,351 aa
    • E Value
      0E0
    • BLAST Score
      3,475.3 bits
    • Similarity
      82.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_000123
      100% cov
    • Alignment Length
      2,362 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260614
      XP_003279379
    • Hit length
      2,352 aa
    • E Value
      0E0
    • BLAST Score
      3,472.2 bits
    • Similarity
      82.23%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_003279379
      100% cov
    • Alignment Length
      2,363 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711477
      XP_002832373
    • Hit length
      2,320 aa
    • E Value
      0E0
    • BLAST Score
      3,363.2 bits
    • Similarity
      81.94%
    • Coverage
      97.84%
    • Alignment (schematic)

      SEQ ID NO 8
      97.84% cov
      XP_002832373
      99.22% cov
    • Alignment Length
      2,314 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149758954
      XP_001498954
    • Hit length
      2,331 aa
    • E Value
      0E0
    • BLAST Score
      3,325.8 bits
    • Similarity
      80.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_001498954
      100% cov
    • Alignment Length
      2,362 aa
  • Rhinolophus ferrumequinum

    Rhinolophus ferrumequinum

    • Public DB hit
      GI:184185514
      ACC68917
    • Hit length
      2,352 aa
    • E Value
      0E0
    • BLAST Score
      3,302.7 bits
    • Similarity
      80.23%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ACC68917
      100% cov
    • Alignment Length
      2,362 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:284005234
      NP_001164742
    • Hit length
      2,336 aa
    • E Value
      0E0
    • BLAST Score
      3,298.1 bits
    • Similarity
      80.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001164742
      100% cov
    • Alignment Length
      2,361 aa
Occurrence
52 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
14
Type
peptide
Locations
Detailed Description

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:171849087
      3CDZ_A
    • Hit length
      754 aa
    • E Value
      1.66E-4
    • BLAST Score
      49 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      3CDZ_A
      1.86% cov
    • Alignment Length
      14 aa
    • CIGAR string
      14M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:157863686
      ABV90867
    • Hit length
      1,457 aa
    • E Value
      2.25E-4
    • BLAST Score
      48.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ABV90867
      0.96% cov
    • Alignment Length
      14 aa
    • CIGAR string
      14M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
167 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
4
Type
peptide
Locations
Detailed Description

Declared organism:
Homo sapiens

Occurrence
39 times in PatSeqDB
Tools
PatSeq Finder

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