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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank EMBL-EBI Pat USPTO Fulltext
4 sequences found in this patent (in total)

Displaying 4 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,343
Type
DNA
Locations
Claims, Detailed Description, Summary

Declared organism:
Methylococcus capsulatus

Determined organism:
  • Methylococcus capsulatus str. Bath

    Methylococcus capsulatus str. Bath

    • Public DB hit
      GI:66270661
      AE017282
    • Hit length
      3,304,561 bp
    • E Value
      0E0
    • BLAST Score
      2,425.8 bits
    • Similarity
      99.26%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AE017282
      0.04% cov
    • Alignment Length
      1,346 bp
    • CIGAR string
      380MI62MD573MI20MIMN2MD184MN5MN14MN4MN91M mismatches: 5 - insertions: 3 - deletions: 2
  • Plasmodium yoelii yoelii 17XNL

    Plasmodium yoelii yoelii 17XNL

    • Public DB hit
      GI:82913781
      XM_723653
    • Hit length
      1,647 bp
    • E Value
      0E0
    • BLAST Score
      2,237.4 bits
    • Similarity
      98.81%
    • Coverage
      93.37%
    • Alignment (schematic)

      SEQ ID NO 1
      93.37% cov
      XM_723653
      76.26% cov
    • Alignment Length
      1,259 bp
    • CIGAR string
      89H108MN182MI62MD562MI11MI20MIMN2MD21MI15MD147MN5MN14MN4MN87MN3M mismatches: 7 - insertions: 5 - deletions: 3
  • Acidovorax citrulli

    Acidovorax citrulli

    • Public DB hit
      GI:12644694
      AF086815
    • Hit length
      24,123 bp
    • E Value
      0E0
    • BLAST Score
      941.1 bits
    • Similarity
      81.25%
    • Coverage
      91.14%
    • Alignment (schematic)

      SEQ ID NO 1
      91.14% cov
      AF086815
      5.02% cov
    • Alignment Length
      1,259 bp
    • CIGAR string
      19MD6MNMNMN6MNMNMI4MN3MN2MN2MI3M2DMIN2MNMDMI2MDMD2MDN5MIMDN2MN10MI2MN3MD7MN35MN2MN2MDMD3M2I16MN8MN4MN2MN2MN5MN2MNMDMI5MI3MD2MN2MN8MN11MN5MI3MD11MN17M2N10MN2MN5MN17MNM2N5MN9MN38MIMN2MN8MN30MNMN2MN12MD5MN2MN4M2N5MN5MN5MNIMD2MN3M2NMN4MDMN2MNIMNMNMNMN17MN8MN2MN2MN17MN22MDMNMIMN2MDMDMDMD3MDMDM3D4M2D2MND17MN5MN3MN2MIMNMIMDMD21MIMD2MN2MNM2N5MN14MI3M2D4MI6MN20MN8MN5MN5MD2M2N3MI2MNMN5MN3MNMN8MN11MN8MIMDMN2MN2MN2M4N6MN6MN4I2MI2MDM2I4MDMD2M2DMDMD3MN2MN2MN2MN15MN2MNIMD6MNMD2MNI5MN8M3NIMDMN2MN5MN11MNMN12M2NMN2MN2MN4MN12MN2MN6M3N2MN4MI9MN5MN6MIMN2MD15MN27MN4MN2MN8M2N4MN9MN11MNMN8MN6MN8MN4MN11MN15M3NI5MD22MN3M119H mismatches: 152 - insertions: 35 - deletions: 49
  • Alicycliphilus denitrificans BC

    Alicycliphilus denitrificans BC

    • Public DB hit
      GI:317115299
      CP002449
    • Hit length
      4,637,013 bp
    • E Value
      0E0
    • BLAST Score
      898.6 bits
    • Similarity
      80.76%
    • Coverage
      90.77%
    • Alignment (schematic)

      SEQ ID NO 1
      90.77% cov
      CP002449
      0.03% cov
    • Alignment Length
      1,258 bp
    • CIGAR string
      3MN15MD8MNMN6MNMNMI4MN3MN2MN2MI2MIM2N3MN2M2D2M2D3MDN5MIMDN2MN11M2I2MD2MDMN5MN35MN2MN2MDMD2MIMI16MN8MN4MN5MIMD7MNMN4MIMN3MD2MN5MN5MN2MN17MN8MN2MN2MN14MN11MN8MN17MNMNMN4MN2MN2MN3MN38MIMN11MN14MN15MNMN2MN12MD13M2N5MN5MN5MNIMD2M2N2M2NMN4MI5MNMIMNDMNMN17MN8MN5MN2MN14MN17MN4MDM2D2MN3MNMNMD3MDMDM3D3MN2D3MD17MN8MIMD2MIMNMIMDMD15M2N5MN2MN2MN8MN14MI3M2D4MI6MN20MN14MN5MD2MI7MNMN5MN5MN8MN20MIMD4MN2MN2M4N3MNM2N4MIM4I3MN2MDM2I4MDMD2M2DMDMD3MN2MN2MN2MN11MN3MN2MNIMD6MNMD2MNI6MNMN5M3NIMD4MI3MD14MNMN3MN8M2NMN2M2I2MI2MNIMD2M2DMD8MN9M3N7MI9MN8MN3MIMN3MD17MN2MN8MN11MN5MN2MN8M2N4MN9MN11MNMN8MN5MN6M2NMN4MN11MN15M3NMN3MNMIMD8MN9M124H mismatches: 151 - insertions: 39 - deletions: 52
  • Acidovorax sp. JS42

    Acidovorax sp. JS42

    • Public DB hit
      GI:120604516
      CP000539
    • Hit length
      4,448,856 bp
    • E Value
      0E0
    • BLAST Score
      898.6 bits
    • Similarity
      80.76%
    • Coverage
      90.77%
    • Alignment (schematic)

      SEQ ID NO 1
      90.77% cov
      CP000539
      0.03% cov
    • Alignment Length
      1,258 bp
    • CIGAR string
      19MD8MNMN6MNMNMI4MN3MN2MN2MI2MIM2N3MN2M2D2M2D3MDN5MIMDN2MN11M2I2MD2MDMN5MN35MN2MN2MDMD2MIMI16MN8MN4MN5MIMD7MNMN4MIMN3MD2MN5MN5MN2MN17MN8MN2MN2MN14MN11MN8MN17MNMNMN4MN2MN2MN3MN38MIMN11MN14MN15MNMN2MN12MD13M2N5MN5MN5MNIMD2M2N2M2NMN4MIMD3MNMIMNDMNMN17MN8MN5MN2MN14MN17MN4MDM2D2MN3MNMNMD3MDMDM3D3MN2D3MD17MN8MIMD2MIMNMIMDMD15M2N5MN2MN2MN8MN14MI3M2D4MI6MN20MN14MN5MD2MI7MNMN5MN5MN8MN20MIMD4MN2MN2M4N3MNM2N4MIM4I3MN2MDM2I4MDMD2M2DMDMD3MN2MN2MN2MN11MN3MN2MNIMD6MNMD2MNI6MNMN5M3NIMD4MI3MD14MNMN3MN8M2NMN2M2I2MI2MNIMD2M2DMD8MN9M3N7MI9MN8MN3MIMN3MD17MN2MN8MN11MN5MN2MN8M2N4MN9MN11MNMN8MN5MN6M2NMN4MN11MN15M3NMN3MNMIMD8MN9M124H mismatches: 150 - insertions: 39 - deletions: 53
  • Acidovorax ebreus TPSY

    Acidovorax ebreus TPSY

    • Public DB hit
      GI:221728669
      CP001392
    • Hit length
      3,796,573 bp
    • E Value
      0E0
    • BLAST Score
      887.5 bits
    • Similarity
      80.59%
    • Coverage
      90.77%
    • Alignment (schematic)

      SEQ ID NO 1
      90.77% cov
      CP001392
      0.03% cov
    • Alignment Length
      1,257 bp
    • CIGAR string
      19MD6MNMNMN6MNMNMI4MN3MN2MN2MI2MIM3N2MN2M2D2M2D3MDN5MIMDN2MN10MIMI2MD2MD7MN35MN2MN3MDMD2M2I16MN8MN4MN5MI2MD6MNMN5MNMI3MD7MN5MN2MN17MN8MN2MN2MN14MN11MN8MN17MNMNMN4MN2MN2MN3MN28MN9MIMN11MN14MN15MNMN2MN12MD12M3N5MN5MN5MNIMD2M2N2M2NMN4MIMD3MNMIMNDMNMN17MN8MN5MN2MN14MN17MN2MNMDM2D2MN3MNMNMD3MDMDM3D3MN2D3MD17MN8MIMD2MIMNMIMDMD14M3N5MN2MN2MN8MN14MI3MNMND8MN20MN14MN5MD2MI7MNMN5MN5MN29MIMD4MN5M4N3MNM2N4MIM4I3MN2MDM2I4MDMD2M2DMDMD3MN2MN2MN2MN11MN3MN2MNIMD6MNMD2MNI5MN8M3NIMD4MI3MD14MNMN3MN8M2NMN2M2I2MI2MNIMD2M2DMD8MN9M3N7MI9MN8MN3MIMN3MD17MN2MN8MN11MN5MN2MN8M2N4MN9MN11MNMN8MN5MN6M2NMN4MN9MNMN15M3NMN3MNMIMD8MN9M124H mismatches: 154 - insertions: 38 - deletions: 52
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
342
Type
peptide
Locations
Detailed Description

Declared organism:
Methylococcus capsulatus

Determined organism:
  • Methylococcus capsulatus str. Bath

    Methylococcus capsulatus str. Bath

    • Public DB hit
      GI:53802395
      YP_112841
    • Hit length
      366 aa
    • E Value
      8.99E-159
    • BLAST Score
      564.7 bits
    • Similarity
      94.19%
    • Coverage
      90.64%
    • Alignment (schematic)

      SEQ ID NO 2
      90.64% cov
      YP_112841
      84.7% cov
    • Alignment Length
      310 aa
    • CIGAR string
      97M21N191MN32H mismatches: 22 - insertions: 0 - deletions: 0
  • Plasmodium yoelii yoelii 17XNL

    Plasmodium yoelii yoelii 17XNL

    • Public DB hit
      GI:82913782
      XP_728746
    • Hit length
      548 aa
    • E Value
      6.34E-155
    • BLAST Score
      552 bits
    • Similarity
      89.7%
    • Coverage
      96.2%
    • Alignment (schematic)

      SEQ ID NO 2
      96.2% cov
      XP_728746
      60.22% cov
    • Alignment Length
      330 aa
    • CIGAR string
      97M21N187M5NM3NMI9N5M13H mismatches: 38 - insertions: 1 - deletions: 0
  • Acidovorax sp. JS42

    Acidovorax sp. JS42

    • Public DB hit
      GI:121592524
      YP_984420
    • Hit length
      362 aa
    • E Value
      1.23E-123
    • BLAST Score
      448 bits
    • Similarity
      82.58%
    • Coverage
      90.64%
    • Alignment (schematic)

      SEQ ID NO 2
      90.64% cov
      YP_984420
      84.53% cov
    • Alignment Length
      310 aa
    • CIGAR string
      3MNMN16M2N8MN6MNM2N35MN5MN12M21N4MN6M2NMNMN2M2N11MN4MN7M4D2M3NMN10M2NMN4MN12M2N14MN2MN2MN14MN3MN2MNM6NMN9M2N2M2N5M2N7MN4MNMNM2N6MN2M2N32H mismatches: 77 - insertions: 0 - deletions: 4
  • Acidovorax ebreus TPSY

    Acidovorax ebreus TPSY

    • Public DB hit
      GI:222109442
      YP_002551706
      1 of 2 hits reported for Acidovorax ebreus TPSY.
    • Hit length
      362 aa
    • E Value
      2.29E-123
    • BLAST Score
      447.2 bits
    • Similarity
      82.26%
    • Coverage
      90.64%
    • Alignment (schematic)

      SEQ ID NO 2
      90.64% cov
      YP_002551706
      84.53% cov
    • Alignment Length
      310 aa
  • Acidovorax citrulli

    Acidovorax citrulli

    • Public DB hit
      GI:12644698
      AAK00489
    • Hit length
      362 aa
    • E Value
      3.72E-123
    • BLAST Score
      446.4 bits
    • Similarity
      82.26%
    • Coverage
      90.64%
    • Alignment (schematic)

      SEQ ID NO 2
      90.64% cov
      AAK00489
      84.53% cov
    • Alignment Length
      310 aa
  • Comamonas testosteroni KF-1

    Comamonas testosteroni KF-1

    • Public DB hit
      GI:221064677
      ZP_03540782
    • Hit length
      352 aa
    • E Value
      6E-119
    • BLAST Score
      432.6 bits
    • Similarity
      83.67%
    • Coverage
      87.72%
    • Alignment (schematic)

      SEQ ID NO 2
      87.72% cov
      ZP_03540782
      84.09% cov
    • Alignment Length
      300 aa
Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
38
Type
DNA
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Methylococcus capsulatus str. Bath

    Methylococcus capsulatus str. Bath

    • Public DB hit
      GI:66270661
      AE017282
    • Hit length
      3,304,561 bp
    • E Value
      1.09E-11
    • BLAST Score
      75.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AE017282
      0% cov
    • Alignment Length
      38 bp
    • CIGAR string
      38M mismatches: 0 - insertions: 0 - deletions: 0
  • Methylococcus capsulatus

    Methylococcus capsulatus

    • Public DB hit
      GI:7770064
      M90050
    • Hit length
      7,188 bp
    • E Value
      1.09E-11
    • BLAST Score
      75.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      M90050
      0.53% cov
    • Alignment Length
      38 bp
    • CIGAR string
      38M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
30
Type
DNA
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder

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