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Search for Biological Sequences disclosed in Patents

Discover PatSeq Finder: Search and analyse similar sequence matches in the Lens PatSeq database effortlessly using PatSeq Finder. Scan 480M+ biological sequences disclosed in patents on a privacy-assured platform and give your IP strategy the edge.

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Data obtained from: DDBJ Pat NCBI GenBank USPTO PSIPS EMBL-EBI Pat
2,906 sequences found in this patent (in total)

Displaying 1 - 10 of 2,906 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,713
Type
DNA
Locations
Detailed Description

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:334184537
      NM_128415
      1 of 9 hits reported for Arabidopsis thaliana.
    • Hit length
      1,968 bp
    • E Value
      0E0
    • BLAST Score
      3,164.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_128415
      87.04% cov
    • Alignment Length
      1,713 bp
    • CIGAR string
      1713M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297826228
      XM_002880951
    • Hit length
      1,686 bp
    • E Value
      0E0
    • BLAST Score
      1,971.5 bits
    • Similarity
      90.04%
    • Coverage
      91.13%
    • Alignment (schematic)

      SEQ ID NO 1
      91.13% cov
      XM_002880951
      90.21% cov
    • Alignment Length
      1,586 bp
Occurrence
65 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
449
Type
peptide
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:18401775
      NP_565674
      1 of 4 hits reported for Arabidopsis thaliana.
    • Hit length
      449 aa
    • E Value
      0E0
    • BLAST Score
      933.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_565674
      100% cov
    • Alignment Length
      449 aa
    • CIGAR string
      449M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297826229
      XP_002880997
    • Hit length
      444 aa
    • E Value
      0E0
    • BLAST Score
      735.7 bits
    • Similarity
      90.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002880997
      100% cov
    • Alignment Length
      455 aa
Occurrence
99 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,055
Type
DNA
Locations
Detailed Description

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:145338605
      NM_112550
      1 of 14 hits reported for Arabidopsis thaliana.
    • Hit length
      1,124 bp
    • E Value
      0E0
    • BLAST Score
      1,949.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_112550
      93.86% cov
    • Alignment Length
      1,055 bp
    • CIGAR string
      1055M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297830285
      XM_002882979
    • Hit length
      800 bp
    • E Value
      0E0
    • BLAST Score
      1,098 bits
    • Similarity
      92.03%
    • Coverage
      74.03%
    • Alignment (schematic)

      SEQ ID NO 3
      74.03% cov
      XM_002882979
      98.25% cov
    • Alignment Length
      790 bp
  • Eutrema halophilum

    Eutrema halophilum

    • Public DB hit
      GI:312281766
      AK352663
    • Hit length
      970 bp
    • E Value
      0E0
    • BLAST Score
      739.8 bits
    • Similarity
      83.45%
    • Coverage
      78.58%
    • Alignment (schematic)

      SEQ ID NO 3
      78.58% cov
      AK352663
      84.23% cov
    • Alignment Length
      852 bp
  • Brassica rapa subsp. pekinensis

    Brassica rapa subsp. pekinensis

    • Public DB hit
      GI:199580000
      AC189317
    • Hit length
      110,411 bp
    • E Value
      4.27E-138
    • BLAST Score
      501.6 bits
    • Similarity
      78.99%
    • Coverage
      75.55%
    • Alignment (schematic)

      SEQ ID NO 3
      75.55% cov
      AC189317
      0.72% cov
    • Alignment Length
      828 bp
Occurrence
80 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
248
Type
peptide
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15228312
      NP_188299
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      248 aa
    • E Value
      3.16E-144
    • BLAST Score
      515.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_188299
      100% cov
    • Alignment Length
      248 aa
    • CIGAR string
      248M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297830286
      XP_002883025
    • Hit length
      250 aa
    • E Value
      1.69E-119
    • BLAST Score
      433.7 bits
    • Similarity
      91.63%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002883025
      100% cov
    • Alignment Length
      251 aa
    • CIGAR string
      9M2N45MN2M2NMD6MN2I69MI3M3NMNM4N13MN8MN7MN4M2N7MN22MN3MN24M mismatches: 22 - insertions: 3 - deletions: 1
  • Eutrema halophilum

    Eutrema halophilum

    • Public DB hit
      GI:312281767
      BAJ33749
    • Hit length
      240 aa
    • E Value
      8.96E-92
    • BLAST Score
      341.7 bits
    • Similarity
      85.31%
    • Coverage
      98.39%
    • Alignment (schematic)

      SEQ ID NO 4
      98.39% cov
      BAJ33749
      98.33% cov
    • Alignment Length
      245 aa
Occurrence
123 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
913
Type
DNA
Locations
Detailed Description

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:30689849
      NM_130048
      1 of 9 hits reported for Arabidopsis thaliana.
    • Hit length
      932 bp
    • E Value
      0E0
    • BLAST Score
      1,648.3 bits
    • Similarity
      99.78%
    • Coverage
      98.36%
    • Alignment (schematic)

      SEQ ID NO 5
      98.36% cov
      NM_130048
      96.35% cov
    • Alignment Length
      898 bp
    • CIGAR string
      890MN2MN4M15H mismatches: 2 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297824518
      XM_002880096
    • Hit length
      763 bp
    • E Value
      0E0
    • BLAST Score
      1,059.3 bits
    • Similarity
      94.2%
    • Coverage
      75.47%
    • Alignment (schematic)

      SEQ ID NO 5
      75.47% cov
      XM_002880096
      92.27% cov
    • Alignment Length
      707 bp
Occurrence
82 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
226
Type
peptide
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15225361
      NP_182011
      1 of 2 hits reported for Arabidopsis thaliana.
    • Hit length
      226 aa
    • E Value
      7.13E-130
    • BLAST Score
      467.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_182011
      100% cov
    • Alignment Length
      226 aa
    • CIGAR string
      226M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297824519
      XP_002880142
    • Hit length
      240 aa
    • E Value
      1.14E-119
    • BLAST Score
      433.7 bits
    • Similarity
      95.56%
    • Coverage
      96.9%
    • Alignment (schematic)

      SEQ ID NO 6
      96.9% cov
      XP_002880142
      93.33% cov
    • Alignment Length
      225 aa
    • CIGAR string
      6H9MN55M6IN5MD114MN29MN2M1H mismatches: 4 - insertions: 6 - deletions: 1
Occurrence
119 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
957
Type
DNA
Locations
Detailed Description

Declared organism:
Arabidopsis thaliana

Occurrence
90 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
176
Type
peptide
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15227814
      NP_179915
    • Hit length
      176 aa
    • E Value
      2.48E-96
    • BLAST Score
      355.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_179915
      100% cov
    • Alignment Length
      176 aa
    • CIGAR string
      176M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297821593
      XP_002878679
    • Hit length
      163 aa
    • E Value
      1.83E-68
    • BLAST Score
      262.7 bits
    • Similarity
      89.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002878679
      100% cov
    • Alignment Length
      176 aa
    • CIGAR string
      3MN2MNMN48MN40MN29MNM13DN22MN4MN4M mismatches: 9 - insertions: 0 - deletions: 13
  • Malus domestica

    Malus domestica

    • Public DB hit
      GI:292668967
      ADE41138
    • Hit length
      157 aa
    • E Value
      6.29E-44
    • BLAST Score
      181.4 bits
    • Similarity
      75.97%
    • Coverage
      84.66%
    • Alignment (schematic)

      SEQ ID NO 8
      84.66% cov
      ADE41138
      93.63% cov
    • Alignment Length
      154 aa
Occurrence
110 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
964
Type
DNA
Locations
Detailed Description

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:240255974
      NM_117855
      1 of 9 hits reported for Arabidopsis thaliana.
    • Hit length
      1,016 bp
    • E Value
      0E0
    • BLAST Score
      1,744.4 bits
    • Similarity
      99.89%
    • Coverage
      98.24%
    • Alignment (schematic)

      SEQ ID NO 9
      98.24% cov
      NM_117855
      93.21% cov
    • Alignment Length
      947 bp
    • CIGAR string
      556MN390M17H mismatches: 1 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297804431
      XM_002870054
    • Hit length
      998 bp
    • E Value
      0E0
    • BLAST Score
      1,301.2 bits
    • Similarity
      91.78%
    • Coverage
      98.24%
    • Alignment (schematic)

      SEQ ID NO 9
      98.24% cov
      XM_002870054
      93.19% cov
    • Alignment Length
      949 bp
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:239582823
      AC236791
    • Hit length
      138,866 bp
    • E Value
      2.21E-175
    • BLAST Score
      625.3 bits
    • Similarity
      81.64%
    • Coverage
      83.2%
    • Alignment (schematic)

      SEQ ID NO 9
      83.2% cov
      AC236791
      0.56% cov
    • Alignment Length
      817 bp
Occurrence
103 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
268
Type
peptide
Locations
Detailed Description

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:240255975
      NP_567530
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      268 aa
    • E Value
      2.87E-154
    • BLAST Score
      549.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_567530
      100% cov
    • Alignment Length
      268 aa
    • CIGAR string
      268M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297804432
      XP_002870100
    • Hit length
      182 aa
    • E Value
      2.06E-80
    • BLAST Score
      303.9 bits
    • Similarity
      91.94%
    • Coverage
      69.4%
    • Alignment (schematic)

      SEQ ID NO 10
      69.4% cov
      XP_002870100
      100% cov
    • Alignment Length
      186 aa
Occurrence
157 times in PatSeqDB
Tools
PatSeq Finder

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