Fish Assay For Eml4 And Alk Fusion In Lung Cancer

  • Published: May 12, 2011
  • Earliest Priority: Feb 12 2008
  • Family: 8
  • Cited Works: 11
  • Cited by: 15
  • Cites: 18
  • Sequences: 3
  • Additional Info: Cited Works Full text
Data obtained from: USPTO Fulltext
3 sequences found in this patent (in total)

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Download sequences in fasta format: 3 nucleotides

Displaying 3 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
33
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194072594
      AB374362
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      2,506 bp
    • E Value
      7.61E-9
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB374362
      1.32% cov
    • Alignment Length
      33 bp
    • CIGAR string
      33M mismatches: 0 - insertions: 0 - deletions: 0
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:118087935
      XM_001233826
    • Hit length
      5,414 bp
    • E Value
      1.86E-6
    • BLAST Score
      58 bits
    • Similarity
      96.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_001233826
      0.61% cov
    • Alignment Length
      33 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:167234434
      NM_001114361
      1 of 7 hits reported for Mus musculus.
    • Hit length
      5,445 bp
    • E Value
      4.52E-4
    • BLAST Score
      50.1 bits
    • Similarity
      93.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_001114361
      0.61% cov
    • Alignment Length
      33 bp
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:334312832
      XM_001382164
      1 of 2 hits reported for Monodelphis domestica.
    • Hit length
      2,997 bp
    • E Value
      1.1E-1
    • BLAST Score
      42.1 bits
    • Similarity
      90.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_001382164
      1.1% cov
    • Alignment Length
      33 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73980206
      XM_858887
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      3,512 bp
    • E Value
      1.1E-1
    • BLAST Score
      42.1 bits
    • Similarity
      90.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_858887
      0.94% cov
    • Alignment Length
      33 bp
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224107446
      XM_002314446
      1 of 2 hits reported for Populus trichocarpa.
    • Hit length
      2,109 bp
    • E Value
      6.8E0
    • BLAST Score
      36.2 bits
    • Similarity
      90%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 1
      90.91% cov
      XM_002314446
      1.42% cov
    • Alignment Length
      30 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
2
Length
396
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332813344
      XM_003309048
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      5,567 bp
    • E Value
      4.03E-174
    • BLAST Score
      619.7 bits
    • Similarity
      100%
    • Coverage
      84.6%
    • Alignment (schematic)

      SEQ ID NO 2
      84.6% cov
      XM_003309048
      6.02% cov
    • Alignment Length
      335 bp
    • CIGAR string
      335M61H mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297667766
      XM_002812092
      1 of 4 hits reported for Pongo abelii.
    • Hit length
      5,373 bp
    • E Value
      4.03E-174
    • BLAST Score
      619.7 bits
    • Similarity
      100%
    • Coverage
      84.6%
    • Alignment (schematic)

      SEQ ID NO 2
      84.6% cov
      XM_002812092
      6.23% cov
    • Alignment Length
      335 bp
    • CIGAR string
      335M61H mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:223029509
      NM_001145076
      1 of 12 hits reported for Homo sapiens.
    • Hit length
      5,391 bp
    • E Value
      4.03E-174
    • BLAST Score
      619.7 bits
    • Similarity
      100%
    • Coverage
      84.6%
    • Alignment (schematic)

      SEQ ID NO 2
      84.6% cov
      NM_001145076
      6.21% cov
    • Alignment Length
      335 bp
    • CIGAR string
      335M61H mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168277621
      AB384933
    • Hit length
      2,786 bp
    • E Value
      4.03E-174
    • BLAST Score
      619.7 bits
    • Similarity
      100%
    • Coverage
      84.6%
    • Alignment (schematic)

      SEQ ID NO 2
      84.6% cov
      AB384933
      12.02% cov
    • Alignment Length
      335 bp
    • CIGAR string
      335M61H mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332227290
      XM_003262779
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      5,289 bp
    • E Value
      1.87E-172
    • BLAST Score
      614.2 bits
    • Similarity
      99.7%
    • Coverage
      84.6%
    • Alignment (schematic)

      SEQ ID NO 2
      84.6% cov
      XM_003262779
      6.33% cov
    • Alignment Length
      335 bp
    • CIGAR string
      32MN302M61H mismatches: 1 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297265874
      XM_002808038
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      5,293 bp
    • E Value
      1.87E-172
    • BLAST Score
      614.2 bits
    • Similarity
      99.7%
    • Coverage
      84.6%
    • Alignment (schematic)

      SEQ ID NO 2
      84.6% cov
      XM_002808038
      6.33% cov
    • Alignment Length
      335 bp
    • CIGAR string
      240MN94M61H mismatches: 1 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296224010
      XM_002757821
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      3,541 bp
    • E Value
      1.91E-157
    • BLAST Score
      564.3 bits
    • Similarity
      97.02%
    • Coverage
      84.6%
    • Alignment (schematic)

      SEQ ID NO 2
      84.6% cov
      XM_002757821
      9.46% cov
    • Alignment Length
      336 bp
    • CIGAR string
      3MN20MN11MN68MN2MN9MN28MN62MN38MI3MD82M61H mismatches: 8 - insertions: 1 - deletions: 1
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
3
Length
24
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332813344
      XM_003309048
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      5,567 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_003309048
      0.43% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:223029509
      NM_001145076
      1 of 20 hits reported for Homo sapiens.
    • Hit length
      5,391 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_001145076
      0.45% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168277621
      AB384933
    • Hit length
      2,786 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB384933
      0.86% cov
    • Alignment Length
      24 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:74199588
      AK169942
    • Hit length
      2,680 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AK169942
      0.9% cov
    • Alignment Length
      24 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297667766
      XM_002812092
    • Hit length
      5,373 bp
    • E Value
      1.68E-1
    • BLAST Score
      40.1 bits
    • Similarity
      95.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002812092
      0.45% cov
    • Alignment Length
      24 bp
Occurrence
11 times in PatSeqDB
Tools

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