Transcriptional Regulator Nucleic Acids, Polypeptides And Methods Of Use Thereof

  • Published: Nov 14, 2002
  • Earliest Priority: Dec 06 2000
  • Family: 11
  • Cited Works: 0
  • Cited by: 1
  • Cites: 0
  • Sequences: 41
  • Additional Info: Full text
Data obtained from: USPTO Fulltext
41 sequences found in this patent (in total)

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Displaying 1 - 10 of 41 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
1,874
Sequence Type
DNA
Locations
Claims
Declared organism
Zea mays
Determined organism
  • Zea mays

    Zea mays

    • Public DB hit
      GI:195599794
      EU947440
    • Hit length
      1,496 bp
    • E Value
      0E0
    • BLAST Score
      2,632.6 bits
    • Similarity
      98.85%
    • Coverage
      78.66%
    • Alignment (schematic)

      SEQ ID NO 1
      78.66% cov
      EU947440
      98.8% cov
    • Alignment Length
      1,478 bp
    • CIGAR string
      356H86MN329MN215MN177MN79M2N68MN123MN36MN20MN22MN155MN16MI32MN75M3I28M44H mismatches: 13 - insertions: 4 - deletions: 0
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242094947
      XM_002437919
    • Hit length
      3,674 bp
    • E Value
      0E0
    • BLAST Score
      2,555 bits
    • Similarity
      92.07%
    • Coverage
      97.71%
    • Alignment (schematic)

      SEQ ID NO 1
      97.71% cov
      XM_002437919
      49.29% cov
    • Alignment Length
      1,842 bp
    • CIGAR string
      10MN20MN44MN34MN36MN5MN22MIMIMI11MN26MN8M3I6MN19MN75MN11MN4MDM2D3MN5M2N7MN12MI2MD9MNMN8MN7MN30MN10MN51MN47MN50MN2MN29MN20MN3MN16MN5MN8M2N68MN17MN2MN4MN22MN3MN78MN37MN54MN12MN13M2NDMD2MDM3NMN35MN3MNMN4MN13MN50MN2MN3MN17MN22MN2MN49MN3MN3MN40MN21MN2M2NMN21MNMN13MN37MN2MN4MN7MN17MN10MN17MDMI10MN15M2NMN8MN8MN2MN11MN18MN8MN22M6D6MN8MDM3DM2D3M4DM3DM2D51MN9MNMN10MN3MN7MN23M2N4MN12MN2MN21M2D12MN11MN2M2IMI9MN14M2N5M43H mismatches: 104 - insertions: 11 - deletions: 31
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:297724550
      NM_001187710
    • Hit length
      4,429 bp
    • E Value
      0E0
    • BLAST Score
      911.5 bits
    • Similarity
      78.55%
    • Coverage
      78.01%
    • Alignment (schematic)

      SEQ ID NO 1
      78.01% cov
      NM_001187710
      33.28% cov
    • Alignment Length
      1,515 bp
  • Oryza sativa

    Oryza sativa

    • Public DB hit
      GI:37542683
      AY062186
    • Hit length
      4,443 bp
    • E Value
      0E0
    • BLAST Score
      911.5 bits
    • Similarity
      78.55%
    • Coverage
      78.01%
    • Alignment (schematic)

      SEQ ID NO 1
      78.01% cov
      AY062186
      33.18% cov
    • Alignment Length
      1,515 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
2
Length
551
Sequence Type
peptide
Locations
Claims
Declared organism
Zea mays
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242094948
      XP_002437964
    • Hit length
      1,147 aa
    • E Value
      0E0
    • BLAST Score
      914.4 bits
    • Similarity
      93.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002437964
      47.43% cov
    • Alignment Length
      553 aa
    • CIGAR string
      36MN21MN2M2NM2N2M3NI4MI8MN28MN2MD3MN10MN5MN13MN69MN4MN4M2N22MN5M2N8MN58MN3MN4M3NDN11MNMNMN23MN12MN17MN2MN20M3N6M2N16M2NMN11MN5MN3MN5MN5MN11MN2MN3M2D9M5DN14M mismatches: 52 - insertions: 2 - deletions: 9
  • Oryza sativa

    Oryza sativa

    • Public DB hit
      GI:37542684
      AAL47211
    • Hit length
      1,360 aa
    • E Value
      0E0
    • BLAST Score
      695.7 bits
    • Similarity
      78.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAL47211
      42.28% cov
    • Alignment Length
      578 aa
    • CIGAR string
      4M3IMN5MN3MN7MN2MNMN7MN18MINM2N4MN2MN3MN2MNMIMN2MN15MN19M3I2MN4MN3M2N2MN8M4NMN2MN3MNMN5MNMN6MN3MN3M2N2M2N5MNMN9M2N19MN2MNMN4MNM2N6MD2MNM2N3MN5MN3MN2M3N4M2N2MN6M2NMN3MN4MN5M4N14MN2MN5MN2MN2M2N2MNM4NI2MN5M2N4MNMN3MN2M3N7MN6MN2MN9MNMN5M2N2M2NMN2MNM2N2MN2MN5MN5MDNM3N3M2NMN2MN7MN3MNM3N2MNMN4MN3MN5M2N2MN3MNM3N2MNMN3M3NDNM3N2M2NM3N16IM2NMN2M4NM6NMN2MN2I4MN mismatches: 159 - insertions: 27 - deletions: 3
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:55771379
      BAD72546
    • Hit length
      1,354 aa
    • E Value
      0E0
    • BLAST Score
      695.7 bits
    • Similarity
      78.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      BAD72546
      42.47% cov
    • Alignment Length
      578 aa
    • CIGAR string
      4M3IMN5MN3MN7MN2MNMN7MN18MINM2N4MN2MN3MN2MNMIMN2MN15MN19M3I2MN4MN3M2N2MN8M4NMN2MN3MNMN5MNMN6MN3MN3M2N2M2N5MNMN9M2N19MN2MNMN4MNM2N6MD2MNM2N3MN5MN3MN2M3N4M2N2MN6M2NMN3MN4MN5M4N14MN2MN5MN2MN2M2N2MNM4NI2MN5M2N4MNMN3MN2M3N7MN6MN2MN9MNMN5M2N2M2NMN2MNM2N2MN2MN5MN5MDNM3N3M2NMN2MN7MN3MNM3N2MNMN4MN3MN5M2N2MN3MNM3N2MNMN3M3NDNM3N2M2NM3N16IM2NMN2M4NM6NMN2MN2I4MN mismatches: 159 - insertions: 27 - deletions: 3
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:218197711
      EEC80138
    • Hit length
      1,309 aa
    • E Value
      0E0
    • BLAST Score
      695.3 bits
    • Similarity
      78.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EEC80138
      43.93% cov
    • Alignment Length
      578 aa
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
3
Length
21
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242094947
      XM_002437919
      1 of 2 hits reported for Sorghum bicolor.
    • Hit length
      3,674 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002437919
      0.57% cov
    • Alignment Length
      21 bp
    • CIGAR string
      10MN10M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
4
Length
23
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242094947
      XM_002437919
      1 of 2 hits reported for Sorghum bicolor.
    • Hit length
      3,674 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002437919
      0.63% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Zea mays

    Zea mays

    • Public DB hit
      GI:308312145
      HQ133566
      1 of 4 hits reported for Zea mays.
    • Hit length
      215 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      HQ133566
      10.7% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
5
Length
297
Sequence Type
peptide
Locations
Claims
Declared organism
Zea mays
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242040921
      XP_002467855
    • Hit length
      1,478 aa
    • E Value
      4.94E-141
    • BLAST Score
      505.8 bits
    • Similarity
      92.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XP_002467855
      20.43% cov
    • Alignment Length
      302 aa
    • CIGAR string
      7MN53MN122MN17M3IM9N25MN5MNMNI2M2N3MN5M2NMN22MI2NMNMN6M mismatches: 25 - insertions: 5 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:108708155
      ABF95950
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,457 aa
    • E Value
      1.71E-126
    • BLAST Score
      457.2 bits
    • Similarity
      85.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ABF95950
      20.18% cov
    • Alignment Length
      300 aa
    • CIGAR string
      N8MN158MN13MNMN2MN11MN6MNM2NM3NMNMN7MN2M5N2M3N3MN2M2NMN6DNMNMI5N10M4N3MN2I4NM3NM3N3MN mismatches: 51 - insertions: 3 - deletions: 6
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:125543874
      EAY90013
    • Hit length
      1,411 aa
    • E Value
      1.84E-126
    • BLAST Score
      457.2 bits
    • Similarity
      85.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EAY90013
      20.84% cov
    • Alignment Length
      300 aa
    • CIGAR string
      N8MN158MN13MNMN2MN11MN6MNM2NM3NMNMN7MN2M5N2M3N3MN2M2NMN6DNMNMI5N10M4N3MN2I4NM3NM3N3MN mismatches: 51 - insertions: 3 - deletions: 6
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255586403
      XP_002533848
    • Hit length
      1,339 aa
    • E Value
      3.67E-78
    • BLAST Score
      296.6 bits
    • Similarity
      87.71%
    • Coverage
      60.27%
    • Alignment (schematic)

      SEQ ID NO 5
      60.27% cov
      XP_002533848
      13.29% cov
    • Alignment Length
      179 aa
  • Physcomitrella patens

    Physcomitrella patens

    • Public DB hit
      GI:168016565
      XP_001760819
    • Hit length
      1,644 aa
    • E Value
      1.7E-75
    • BLAST Score
      287.7 bits
    • Similarity
      77.03%
    • Coverage
      71.72%
    • Alignment (schematic)

      SEQ ID NO 5
      71.72% cov
      XP_001760819
      13.5% cov
    • Alignment Length
      222 aa
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
6
Length
22
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
  • Zea mays

    Zea mays

    • Public DB hit
      GI:54653636
      BT018855
    • Hit length
      1,942 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      BT018855
      1.13% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Vibrio sp. Ex25

    Vibrio sp. Ex25

    • Public DB hit
      GI:262335977
      CP001805
    • Hit length
      3,259,580 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      95.45%
    • Alignment (schematic)

      SEQ ID NO 6
      95.45% cov
      CP001805
      0% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M1H mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
7
Length
23
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Artificial
Determined organism
  • Zea mays

    Zea mays

    • Public DB hit
      GI:54653636
      BT018855
      1 of 2 hits reported for Zea mays.
    • Hit length
      1,942 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      BT018855
      1.18% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:146262749
      AC196280
    • Hit length
      167,568 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 7
      91.3% cov
      AC196280
      0.01% cov
    • Alignment Length
      21 bp
  • Enterovirus B75

    Enterovirus B75

    • Public DB hit
      GI:49425058
      AY556068
    • Hit length
      2,577 bp
    • E Value
      8.28E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 7
      91.3% cov
      AY556068
      0.81% cov
    • Alignment Length
      21 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
8
Length
1,913
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Zea mays
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242089492
      XM_002440534
    • Hit length
      3,675 bp
    • E Value
      0E0
    • BLAST Score
      3,112.7 bits
    • Similarity
      96.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_002440534
      52.05% cov
    • Alignment Length
      1,915 bp
    • CIGAR string
      46MN11MN11MN65MN72MN28MN23MN23MN21MN70MN26MN57MN2MN14MN37MN29MN26MN26MN37MN24MN29MN5MN5MN17MN68MN2MN26MN8MN2MN27MN49MN50MN17MN20MN38MN60MI22MN17MN5MN44MN13MD67MN44MN2MN18MN106MN2MN26MN11MN14MN2MN35MN8MN20MN18MN10MN4MIMD3MN6MN19MN31MN26MN4MN9MN8MN59MN20MN8MN29MN26MN3MNMN8MNMN10MN8M mismatches: 72 - insertions: 2 - deletions: 2
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226531236
      NM_001148393
    • Hit length
      1,713 bp
    • E Value
      0E0
    • BLAST Score
      2,787.7 bits
    • Similarity
      99.87%
    • Coverage
      79.19%
    • Alignment (schematic)

      SEQ ID NO 8
      79.19% cov
      NM_001148393
      88.44% cov
    • Alignment Length
      1,516 bp
    • CIGAR string
      398H708MI105MD701M mismatches: 0 - insertions: 1 - deletions: 1
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115462048
      NM_001061159
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      3,738 bp
    • E Value
      0E0
    • BLAST Score
      2,010.3 bits
    • Similarity
      86.2%
    • Coverage
      97.96%
    • Alignment (schematic)

      SEQ ID NO 8
      97.96% cov
      NM_001061159
      50.13% cov
    • Alignment Length
      1,898 bp
    • CIGAR string
      13MN2MN5MN2MN2MN17MN11MN8MN2MN32MN2MN5MI2MDMN17MI2MD2NM2N3MN20MN21M2N9MN5MN15MN4MN18MN7MN11MN20MIMD7MN5MN3MN2MN7MN32MN14MN11MN20MN41MN2MN2MN20M2N4MN9MN10M2N25MN23MN5MN14MN11MN38MN3MIMN2MD2MN4MIMDN7MN3MN4MN10MN4MN8MN11MN11MN2MN11MN2MN5MN2MN8MN2MN3MN14MN25MN2MN12MN43MN12MNMN6MN17MNMN26MN14MN8MN3MN13MN8MN2MN9MN7MN8MN2MN8MN20MN2MN8MN5MN5MN11MN11MN2MN2MN17MN5MN2MI2MN17MN2MN14MN5MN15MN16MN11MN13MD11MN4MN8MN8MN5MN2MN23MN5MN2MN8MN8MN8MN8MN2MN17MN2MI2MD43MN3M2N15MNMN2MN2MN5MD6MI11MN5MN2MN5M2N2MDMI4MNMDMI3MI2MI3MD2MD7M3N7MNM2N2MNM3NMN5MN4MN2MI4MD10MN11MN18MNMN5MNMNMN7MNMN5MD2MNIMN3MIMI3M2DMN3M2N2MIMD5MN2MN5M2NMN4MN2IMI2MD3MI5MN11MNMN2M2N3MN3M2N4M2N5MNMN2M2N4M2N2MNMN6MN2MN2MN4MN9MN5MN5MN8MN4MN6MN4MN6MN3MD2MIM2N2MN2MNM2N2MN2M3N3M3D6MN8MN5MI2MD3MI2MD16M39H mismatches: 214 - insertions: 24 - deletions: 24
  • Triticum aestivum

    Triticum aestivum

    • Public DB hit
      GI:241988235
      AK335493
    • Hit length
      3,801 bp
    • E Value
      0E0
    • BLAST Score
      1,663.1 bits
    • Similarity
      82.82%
    • Coverage
      99.27%
    • Alignment (schematic)

      SEQ ID NO 8
      99.27% cov
      AK335493
      50.12% cov
    • Alignment Length
      1,944 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
9
Length
636
Sequence Type
peptide
Locations
Claims
Declared organism
Zea mays
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242089493
      XP_002440579
    • Hit length
      1,127 aa
    • E Value
      0E0
    • BLAST Score
      1,188.7 bits
    • Similarity
      96.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_002440579
      56.43% cov
    • Alignment Length
      637 aa
    • CIGAR string
      69MN143MN74MN80M4NDM2NMN3M12NM6NIM2N98MN29MN4MNMNMN6MN20MN56MN3MN3MNM mismatches: 40 - insertions: 1 - deletions: 1
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115462049
      NP_001054624
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,128 aa
    • E Value
      0E0
    • BLAST Score
      1,039.6 bits
    • Similarity
      89.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_001054624
      56.38% cov
    • Alignment Length
      638 aa
    • CIGAR string
      33M2N2MN6M3N15MN32MN49MN60M3NMN2MN2MN30MN4MN32MN2MN5MN30MN43M4NDM2NMN3M12NM6NIM2N45MN15MN5MN3MNMN9M2NM5N3MN2M5N19MNM3NM2NM4NMNM2N5MNMIMN7M2NM2NMN2M2NMNMN3MNMN11MN3MN3M2N2MN2MDMN4MN2MNMN6MN4MN2M2NM mismatches: 105 - insertions: 2 - deletions: 2
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225432582
      XP_002281240
      1 of 2 hits reported for Vitis vinifera.
    • Hit length
      1,103 aa
    • E Value
      0E0
    • BLAST Score
      807.7 bits
    • Similarity
      76.5%
    • Coverage
      99.53%
    • Alignment (schematic)

      SEQ ID NO 9
      99.53% cov
      XP_002281240
      58.2% cov
    • Alignment Length
      651 aa
    • CIGAR string
      3MN9MN3MN6M3N5M2N3MN3M7N4MN6M2N2MN4M2N3MN25MN23MN2MN4M2N11M2IN4MN3MN8MNMN3MN13MN18MN3M4NMNM2NMNIN2MN19M2N2M2NMIN2MN18MN12MNMNMN7M3N2MN12M2NM2N2M2N2MN46M2NDMNM2NMN3M12NM6NIM2N15M2NMN2MN4MN3MNMN12MN5MN9M2N3MN4M3N3MNM5NMI8NM8N9MN2M2NMI4M2NM2N3M7NM4N9IM2NM2NM6NM3NM5NMNM2NM6NMN8D2NM4NM5NM3NM3N2MNM2N3M2I4N5MN2MN3H mismatches: 202 - insertions: 18 - deletions: 9
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226531237
      NP_001141865
    • Hit length
      444 aa
    • E Value
      0E0
    • BLAST Score
      790.4 bits
    • Similarity
      96.18%
    • Coverage
      69.81%
    • Alignment (schematic)

      SEQ ID NO 9
      69.81% cov
      NP_001141865
      100% cov
    • Alignment Length
      445 aa
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:125550816
      EAY96525
    • Hit length
      1,088 aa
    • E Value
      0E0
    • BLAST Score
      779.2 bits
    • Similarity
      84.21%
    • Coverage
      86.32%
    • Alignment (schematic)

      SEQ ID NO 9
      86.32% cov
      EAY96525
      50.46% cov
    • Alignment Length
      551 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297833338
      XP_002884551
    • Hit length
      1,130 aa
    • E Value
      0E0
    • BLAST Score
      777.3 bits
    • Similarity
      81.63%
    • Coverage
      89.78%
    • Alignment (schematic)

      SEQ ID NO 9
      89.78% cov
      XP_002884551
      50.8% cov
    • Alignment Length
      577 aa
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:6671969
      AAF23228
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      1,132 aa
    • E Value
      0E0
    • BLAST Score
      773.5 bits
    • Similarity
      76.98%
    • Coverage
      97.96%
    • Alignment (schematic)

      SEQ ID NO 9
      97.96% cov
      AAF23228
      55.48% cov
    • Alignment Length
      630 aa
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255552319
      XP_002517204
    • Hit length
      1,079 aa
    • E Value
      0E0
    • BLAST Score
      746.1 bits
    • Similarity
      75.24%
    • Coverage
      93.87%
    • Alignment (schematic)

      SEQ ID NO 9
      93.87% cov
      XP_002517204
      56.9% cov
    • Alignment Length
      618 aa
  • Physcomitrella patens

    Physcomitrella patens

    • Public DB hit
      GI:168019640
      XP_001762352
    • Hit length
      1,289 aa
    • E Value
      0E0
    • BLAST Score
      744.2 bits
    • Similarity
      75.65%
    • Coverage
      94.65%
    • Alignment (schematic)

      SEQ ID NO 9
      94.65% cov
      XP_001762352
      46% cov
    • Alignment Length
      612 aa
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
10
Length
23
Sequence Type
DNA
Locations
Claims
Declared organism
Artificial
Determined organism
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242089492
      XM_002440534
      1 of 2 hits reported for Sorghum bicolor.
    • Hit length
      3,675 bp
    • E Value
      2.09E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      95.65%
    • Alignment (schematic)

      SEQ ID NO 10
      95.65% cov
      XM_002440534
      0.6% cov
    • Alignment Length
      22 bp
    • CIGAR string
      1H11MN10M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools

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