Compositions And Methods For Increasing Cellulose Production

  • Published: May 1, 2012
  • Earliest Priority: Nov 24 2008
  • Family: 4
  • Cited Works: 17
  • Cited by: 0
  • Cites: 10
  • Sequences: 54
  • Additional Info: Cited Works Full text
Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
54 sequences found in this patent (in total)

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Download sequences in fasta format: 14 peptides 40 nucleotides

Displaying 1 - 10 of 54 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
2,163
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:145325422
      NM_001084247
      1 of 13 hits reported for Arabidopsis thaliana.
    • Hit length
      2,471 bp
    • E Value
      0E0
    • BLAST Score
      3,995.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_001084247
      87.54% cov
    • Alignment Length
      2,163 bp
    • CIGAR string
      2163M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297847777
      XM_002891724
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      2,402 bp
    • E Value
      0E0
    • BLAST Score
      3,509.8 bits
    • Similarity
      95.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_002891724
      90.17% cov
    • Alignment Length
      2,167 bp
  • Isatis tinctoria

    Isatis tinctoria

    • Public DB hit
      GI:78099322
      DQ211577
    • Hit length
      2,477 bp
    • E Value
      0E0
    • BLAST Score
      2,894.8 bits
    • Similarity
      90.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      DQ211577
      87.2% cov
    • Alignment Length
      2,180 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
2
Length
720
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:145325423
      NP_001077716
      1 of 6 hits reported for Arabidopsis thaliana.
    • Hit length
      720 aa
    • E Value
      0E0
    • BLAST Score
      1,473.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001077716
      100% cov
    • Alignment Length
      720 aa
    • CIGAR string
      720M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297847778
      XP_002891770
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      721 aa
    • E Value
      0E0
    • BLAST Score
      1,328.9 bits
    • Similarity
      98.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002891770
      100% cov
    • Alignment Length
      721 aa
    • CIGAR string
      16MI62MN44MN10MN2MN4MN19MN20MN79MN2MN9MN37MN8MN47MN15M2N10MN88MN38MN12MN58MN20MN90MN8M mismatches: 22 - insertions: 1 - deletions: 0
  • Isatis tinctoria

    Isatis tinctoria

    • Public DB hit
      GI:78099323
      ABB20817
    • Hit length
      719 aa
    • E Value
      0E0
    • BLAST Score
      1,238.4 bits
    • Similarity
      95.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ABB20817
      100% cov
    • Alignment Length
      721 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225441951
      XP_002262959
      1 of 3 hits reported for Vitis vinifera.
    • Hit length
      714 aa
    • E Value
      0E0
    • BLAST Score
      896.3 bits
    • Similarity
      79%
    • Coverage
      99.31%
    • Alignment (schematic)

      SEQ ID NO 2
      99.31% cov
      XP_002262959
      99.3% cov
    • Alignment Length
      719 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224138524
      XP_002326624
    • Hit length
      714 aa
    • E Value
      0E0
    • BLAST Score
      859 bits
    • Similarity
      79.49%
    • Coverage
      96.94%
    • Alignment (schematic)

      SEQ ID NO 2
      96.94% cov
      XP_002326624
      97.06% cov
    • Alignment Length
      702 aa
  • Solanum chacoense

    Solanum chacoense

    • Public DB hit
      GI:129563703
      ABO31100
    • Hit length
      711 aa
    • E Value
      0E0
    • BLAST Score
      827.8 bits
    • Similarity
      78.73%
    • Coverage
      95.56%
    • Alignment (schematic)

      SEQ ID NO 2
      95.56% cov
      ABO31100
      95.78% cov
    • Alignment Length
      691 aa
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
3
Length
2,154
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:145338493
      NM_112293
      1 of 15 hits reported for Arabidopsis thaliana.
    • Hit length
      2,749 bp
    • E Value
      0E0
    • BLAST Score
      3,978.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_112293
      78.36% cov
    • Alignment Length
      2,154 bp
    • CIGAR string
      2154M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834311
      XM_002884992
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      2,681 bp
    • E Value
      0E0
    • BLAST Score
      3,471 bits
    • Similarity
      95.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002884992
      80.23% cov
    • Alignment Length
      2,157 bp
  • Isatis tinctoria

    Isatis tinctoria

    • Public DB hit
      GI:78099322
      DQ211577
    • Hit length
      2,477 bp
    • E Value
      0E0
    • BLAST Score
      1,591.1 bits
    • Similarity
      80.79%
    • Coverage
      98%
    • Alignment (schematic)

      SEQ ID NO 3
      98% cov
      DQ211577
      84.86% cov
    • Alignment Length
      2,160 bp
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
4
Length
717
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:30683104
      NP_188052
      1 of 5 hits reported for Arabidopsis thaliana.
    • Hit length
      717 aa
    • E Value
      0E0
    • BLAST Score
      1,467.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_188052
      100% cov
    • Alignment Length
      717 aa
    • CIGAR string
      717M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834312
      XP_002885038
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      716 aa
    • E Value
      0E0
    • BLAST Score
      1,283.1 bits
    • Similarity
      98.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002885038
      100% cov
    • Alignment Length
      717 aa
    • CIGAR string
      36MN15MN25M2N8MN12MN4MN69MN5MN44MN32MD8M2N7MN13MN7MN43MN28MN35MN3MN208MN82MN11M mismatches: 21 - insertions: 0 - deletions: 1
  • Isatis tinctoria

    Isatis tinctoria

    • Public DB hit
      GI:78099323
      ABB20817
    • Hit length
      719 aa
    • E Value
      0E0
    • BLAST Score
      1,066.2 bits
    • Similarity
      88.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ABB20817
      100% cov
    • Alignment Length
      724 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:297742917
      CBI35784
      1 of 3 hits reported for Vitis vinifera.
    • Hit length
      708 aa
    • E Value
      0E0
    • BLAST Score
      889 bits
    • Similarity
      80.93%
    • Coverage
      98.47%
    • Alignment (schematic)

      SEQ ID NO 4
      98.47% cov
      CBI35784
      98.59% cov
    • Alignment Length
      708 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224138524
      XP_002326624
    • Hit length
      714 aa
    • E Value
      0E0
    • BLAST Score
      873.2 bits
    • Similarity
      80.4%
    • Coverage
      96.93%
    • Alignment (schematic)

      SEQ ID NO 4
      96.93% cov
      XP_002326624
      97.06% cov
    • Alignment Length
      704 aa
  • Solanum chacoense

    Solanum chacoense

    • Public DB hit
      GI:129563703
      ABO31100
    • Hit length
      711 aa
    • E Value
      0E0
    • BLAST Score
      813.9 bits
    • Similarity
      78.31%
    • Coverage
      95.54%
    • Alignment (schematic)

      SEQ ID NO 4
      95.54% cov
      ABO31100
      95.08% cov
    • Alignment Length
      687 aa
Occurrence
23 times in PatSeqDB
Tools
SEQ ID NO
5
Length
2,328
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:114841160
      DQ914919
      1 of 6 hits reported for Arabidopsis thaliana.
    • Hit length
      2,792 bp
    • E Value
      0E0
    • BLAST Score
      4,300.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      DQ914919
      83.38% cov
    • Alignment Length
      2,328 bp
    • CIGAR string
      2328M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297836857
      XM_002886265
    • Hit length
      2,737 bp
    • E Value
      0E0
    • BLAST Score
      2,961.3 bits
    • Similarity
      92.45%
    • Coverage
      89.65%
    • Alignment (schematic)

      SEQ ID NO 5
      89.65% cov
      XM_002886265
      75.78% cov
    • Alignment Length
      2,106 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
6
Length
775
Sequence Type
peptide
Locations
Drawings
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:114841156
      ABI81608
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      775 aa
    • E Value
      0E0
    • BLAST Score
      1,584.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ABI81608
      100% cov
    • Alignment Length
      775 aa
    • CIGAR string
      775M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297836858
      XP_002886311
    • Hit length
      776 aa
    • E Value
      0E0
    • BLAST Score
      1,216.1 bits
    • Similarity
      88.73%
    • Coverage
      97.94%
    • Alignment (schematic)

      SEQ ID NO 6
      97.94% cov
      XP_002886311
      98.97% cov
    • Alignment Length
      781 aa
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
7
Length
2,319
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:111703766
      AY518286
      1 of 6 hits reported for Arabidopsis thaliana.
    • Hit length
      2,794 bp
    • E Value
      0E0
    • BLAST Score
      4,283.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AY518286
      83% cov
    • Alignment Length
      2,319 bp
    • CIGAR string
      2319M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297836857
      XM_002886265
    • Hit length
      2,737 bp
    • E Value
      0E0
    • BLAST Score
      2,961.3 bits
    • Similarity
      92.45%
    • Coverage
      90%
    • Alignment (schematic)

      SEQ ID NO 7
      90% cov
      XM_002886265
      75.78% cov
    • Alignment Length
      2,107 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
8
Length
772
Sequence Type
peptide
Locations
Drawings
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15810275
      AAL07025
      1 of 3 hits reported for Arabidopsis thaliana.
    • Hit length
      772 aa
    • E Value
      0E0
    • BLAST Score
      1,580.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAL07025
      100% cov
    • Alignment Length
      772 aa
    • CIGAR string
      772M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297836858
      XP_002886311
    • Hit length
      776 aa
    • E Value
      0E0
    • BLAST Score
      1,221.8 bits
    • Similarity
      89.12%
    • Coverage
      98.32%
    • Alignment (schematic)

      SEQ ID NO 8
      98.32% cov
      XP_002886311
      98.97% cov
    • Alignment Length
      781 aa
Occurrence
9 times in PatSeqDB
Tools
SEQ ID NO
9
Length
1,263
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:114841158
      DQ914918
      1 of 8 hits reported for Arabidopsis thaliana.
    • Hit length
      2,883 bp
    • E Value
      0E0
    • BLAST Score
      2,333.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      DQ914918
      43.81% cov
    • Alignment Length
      1,263 bp
    • CIGAR string
      1263M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297836857
      XM_002886265
    • Hit length
      2,737 bp
    • E Value
      0E0
    • BLAST Score
      1,301.2 bits
    • Similarity
      92.7%
    • Coverage
      71.5%
    • Alignment (schematic)

      SEQ ID NO 9
      71.5% cov
      XM_002886265
      33.18% cov
    • Alignment Length
      918 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
10
Length
420
Sequence Type
peptide
Locations
Drawings
Declared organism
Arabidopsis thaliana
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:114841159
      ABI81610
      1 of 5 hits reported for Arabidopsis thaliana.
    • Hit length
      420 aa
    • E Value
      0E0
    • BLAST Score
      838.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ABI81610
      100% cov
    • Alignment Length
      420 aa
    • CIGAR string
      420M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297836858
      XP_002886311
    • Hit length
      776 aa
    • E Value
      4.46E-150
    • BLAST Score
      536.6 bits
    • Similarity
      86.89%
    • Coverage
      87.38%
    • Alignment (schematic)

      SEQ ID NO 10
      87.38% cov
      XP_002886311
      49.23% cov
    • Alignment Length
      389 aa
Occurrence
4 times in PatSeqDB
Tools

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