Method Of Detecting Ivermectin Sensitivity In A Canine Subject By Identifying A Mutation In A Mdr1-encoding Sequence

  • Published: Jul 1, 2008
  • Earliest Priority: Jan 12 2001
  • Family: 13
  • Cited Works: 45
  • Cited by: 0
  • Cites: 8
  • Sequences: 10
  • Additional Info: Cited Works Full text
Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
10 sequences found in this patent (in total)

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Download sequences in fasta format: 1 peptide 9 nucleotides

Displaying 1 - 10 of 10 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
4,317
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Canis lupus familiaris
Determined organism
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978983
      NM_001003215
      1 of 6 hits reported for Canis lupus familiaris.
    • Hit length
      4,317 bp
    • E Value
      0E0
    • BLAST Score
      7,973.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_001003215
      100% cov
    • Alignment Length
      4,317 bp
    • CIGAR string
      4317M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926216
      AF269224
    • Hit length
      4,045 bp
    • E Value
      0E0
    • BLAST Score
      7,055.3 bits
    • Similarity
      99.71%
    • Coverage
      89.23%
    • Alignment (schematic)

      SEQ ID NO 1
      89.23% cov
      AF269224
      95.3% cov
    • Alignment Length
      3,855 bp
    • CIGAR string
      72H63M2I6MI498MN60MN349MN10MN598MN486MN3MN1753MN18M393H mismatches: 8 - insertions: 3 - deletions: 0
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301756331
      XM_002913968
    • Hit length
      4,308 bp
    • E Value
      0E0
    • BLAST Score
      6,239.1 bits
    • Similarity
      93.04%
    • Coverage
      98.91%
    • Alignment (schematic)

      SEQ ID NO 1
      98.91% cov
      XM_002913968
      99.21% cov
    • Alignment Length
      4,283 bp
  • Felis catus

    Felis catus

    • Public DB hit
      GI:283806557
      NM_001171064
    • Hit length
      4,310 bp
    • E Value
      0E0
    • BLAST Score
      5,939.9 bits
    • Similarity
      91.67%
    • Coverage
      99.56%
    • Alignment (schematic)

      SEQ ID NO 1
      99.56% cov
      NM_001171064
      99.65% cov
    • Alignment Length
      4,320 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:318037598
      NM_000927
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      4,718 bp
    • E Value
      0E0
    • BLAST Score
      5,171.7 bits
    • Similarity
      88.53%
    • Coverage
      99.86%
    • Alignment (schematic)

      SEQ ID NO 1
      99.86% cov
      NM_000927
      90.93% cov
    • Alignment Length
      4,360 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297681135
      XM_002818276
    • Hit length
      5,620 bp
    • E Value
      0E0
    • BLAST Score
      5,168 bits
    • Similarity
      88.6%
    • Coverage
      99.56%
    • Alignment (schematic)

      SEQ ID NO 1
      99.56% cov
      XM_002818276
      76.05% cov
    • Alignment Length
      4,349 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332866311
      XM_001163417
    • Hit length
      5,332 bp
    • E Value
      0E0
    • BLAST Score
      5,134.8 bits
    • Similarity
      88.39%
    • Coverage
      99.81%
    • Alignment (schematic)

      SEQ ID NO 1
      99.81% cov
      XM_001163417
      80.42% cov
    • Alignment Length
      4,359 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335295538
      XM_003130205
    • Hit length
      4,549 bp
    • E Value
      0E0
    • BLAST Score
      5,073.9 bits
    • Similarity
      88.08%
    • Coverage
      99.56%
    • Alignment (schematic)

      SEQ ID NO 1
      99.56% cov
      XM_003130205
      94.64% cov
    • Alignment Length
      4,347 bp
Occurrence
14 times in PatSeqDB
Tools
SEQ ID NO
2
Length
1,280
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Canis lupus familiaris
Determined organism
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978984
      NP_001003215
      1 of 5 hits reported for Canis lupus familiaris.
    • Hit length
      1,280 aa
    • E Value
      0E0
    • BLAST Score
      2,636.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001003215
      100% cov
    • Alignment Length
      1,280 aa
    • CIGAR string
      1280M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926217
      AAF81747
    • Hit length
      1,287 aa
    • E Value
      0E0
    • BLAST Score
      2,592.4 bits
    • Similarity
      99.69%
    • Coverage
      99.92%
    • Alignment (schematic)

      SEQ ID NO 2
      99.92% cov
      AAF81747
      99.46% cov
    • Alignment Length
      1,280 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301756332
      XP_002914014
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      1,280 aa
    • E Value
      0E0
    • BLAST Score
      2,458.7 bits
    • Similarity
      97.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002914014
      100% cov
    • Alignment Length
      1,281 aa
  • Felis catus

    Felis catus

    • Public DB hit
      GI:283806558
      NP_001164535
    • Hit length
      1,279 aa
    • E Value
      0E0
    • BLAST Score
      2,444.8 bits
    • Similarity
      96.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001164535
      100% cov
    • Alignment Length
      1,280 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297681136
      XP_002818322
    • Hit length
      1,279 aa
    • E Value
      0E0
    • BLAST Score
      2,368.2 bits
    • Similarity
      95.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002818322
      99.92% cov
    • Alignment Length
      1,281 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:386862
      AAA59576
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      1,280 aa
    • E Value
      0E0
    • BLAST Score
      2,364 bits
    • Similarity
      95.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAA59576
      99.92% cov
    • Alignment Length
      1,281 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114614336
      XP_001163417
    • Hit length
      1,280 aa
    • E Value
      0E0
    • BLAST Score
      2,363.6 bits
    • Similarity
      95.16%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001163417
      99.92% cov
    • Alignment Length
      1,281 aa
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:31442763
      AAN07780
    • Hit length
      1,283 aa
    • E Value
      0E0
    • BLAST Score
      2,361.6 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAN07780
      99.92% cov
    • Alignment Length
      1,282 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136329
      NP_001028059
    • Hit length
      1,283 aa
    • E Value
      0E0
    • BLAST Score
      2,357 bits
    • Similarity
      95.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001028059
      99.92% cov
    • Alignment Length
      1,282 aa
Occurrence
25 times in PatSeqDB
Tools
SEQ ID NO
3
Length
20
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
synthetic oligonucleotide
Determined organism
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335295538
      XM_003130205
      1 of 3 hits reported for Sus scrofa.
    • Hit length
      4,549 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_003130205
      0.44% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:334348854
      XM_001377586
      1 of 4 hits reported for Monodelphis domestica.
    • Hit length
      4,381 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_001377586
      0.46% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297473684
      XM_002686731
      1 of 5 hits reported for Bos taurus.
    • Hit length
      4,577 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002686731
      0.44% cov
    • Alignment Length
      20 bp
  • Felis catus

    Felis catus

    • Public DB hit
      GI:283806557
      NM_001171064
      1 of 2 hits reported for Felis catus.
    • Hit length
      4,310 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_001171064
      0.46% cov
    • Alignment Length
      20 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978983
      NM_001003215
      1 of 4 hits reported for Canis lupus familiaris.
    • Hit length
      4,317 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_001003215
      0.46% cov
    • Alignment Length
      20 bp
  • Ovis aries

    Ovis aries

    • Public DB hit
      GI:57526445
      NM_001009790
      1 of 2 hits reported for Ovis aries.
    • Hit length
      3,858 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_001009790
      0.52% cov
    • Alignment Length
      20 bp
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:25453401
      NM_133401
      1 of 4 hits reported for Rattus norvegicus.
    • Hit length
      4,927 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_133401
      0.41% cov
    • Alignment Length
      20 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926216
      AF269224
    • Hit length
      4,045 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF269224
      0.49% cov
    • Alignment Length
      20 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
4
Length
21
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
synthetic oligonucleotide
Determined organism
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978983
      NM_001003215
      1 of 9 hits reported for Canis lupus familiaris.
    • Hit length
      4,317 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_001003215
      0.49% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926216
      AF269224
    • Hit length
      4,045 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AF269224
      0.52% cov
    • Alignment Length
      21 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194209587
      XM_001492023
      1 of 2 hits reported for Equus caballus.
    • Hit length
      4,785 bp
    • E Value
      1.01E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      95.24%
    • Alignment (schematic)

      SEQ ID NO 4
      95.24% cov
      XM_001492023
      0.42% cov
    • Alignment Length
      20 bp
  • Solanum lycopersicum

    Solanum lycopersicum

    • Public DB hit
      GI:261264978
      GU048895
      1 of 2 hits reported for Solanum lycopersicum.
    • Hit length
      124,501 bp
    • E Value
      1.01E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      95.24%
    • Alignment (schematic)

      SEQ ID NO 4
      95.24% cov
      GU048895
      0.02% cov
    • Alignment Length
      20 bp
  • Penicillium chrysogenum Wisconsin 54-1255

    Penicillium chrysogenum Wisconsin 54-1255

    • Public DB hit
      GI:255955898
      XM_002568656
      1 of 2 hits reported for Penicillium chrysogenum Wisconsin 54-1255.
    • Hit length
      6,165 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 4
      90.48% cov
      XM_002568656
      0.31% cov
    • Alignment Length
      19 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
5
Length
22
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
synthetic oligonucleotide
Determined organism
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978983
      NM_001003215
      1 of 9 hits reported for Canis lupus familiaris.
    • Hit length
      4,317 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_001003215
      0.51% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926216
      AF269224
    • Hit length
      4,045 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AF269224
      0.54% cov
    • Alignment Length
      22 bp
  • Pseudomonas mendocina NK-01

    Pseudomonas mendocina NK-01

    • Public DB hit
      GI:328915200
      CP002620
    • Hit length
      5,434,353 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      95.45%
    • Alignment (schematic)

      SEQ ID NO 5
      95.45% cov
      CP002620
      0% cov
    • Alignment Length
      21 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
6
Length
22
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
synthetic oligonucleotide
Determined organism
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978983
      NM_001003215
      1 of 7 hits reported for Canis lupus familiaris.
    • Hit length
      4,317 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NM_001003215
      0.51% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926216
      AF269224
    • Hit length
      4,045 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AF269224
      0.54% cov
    • Alignment Length
      22 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
7
Length
20
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
synthetic oligonucleotide
Determined organism
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978983
      NM_001003215
      1 of 7 hits reported for Canis lupus familiaris.
    • Hit length
      4,317 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_001003215
      0.46% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926216
      AF269224
    • Hit length
      4,045 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AF269224
      0.49% cov
    • Alignment Length
      20 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
8
Length
22
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
synthetic oligonucleotide
Determined organism
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978983
      NM_001003215
      1 of 8 hits reported for Canis lupus familiaris.
    • Hit length
      4,317 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001003215
      0.51% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926216
      AF269224
    • Hit length
      4,045 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF269224
      0.54% cov
    • Alignment Length
      22 bp
  • Haemophilus somnus 2336

    Haemophilus somnus 2336

    • Public DB hit
      GI:168825335
      CP000947
    • Hit length
      2,263,857 bp
    • E Value
      1.57E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP000947
      0% cov
    • Alignment Length
      22 bp
  • Haemophilus somnus 129PT

    Haemophilus somnus 129PT

    • Public DB hit
      GI:112822192
      CP000436
    • Hit length
      2,007,700 bp
    • E Value
      1.57E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP000436
      0% cov
    • Alignment Length
      22 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
9
Length
21
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
synthetic oligonucleotide
Determined organism
  • Felis catus

    Felis catus

    • Public DB hit
      GI:283806557
      NM_001171064
      1 of 3 hits reported for Felis catus.
    • Hit length
      4,310 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_001171064
      0.49% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978983
      NM_001003215
      1 of 8 hits reported for Canis lupus familiaris.
    • Hit length
      4,317 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_001003215
      0.49% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926216
      AF269224
    • Hit length
      4,045 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AF269224
      0.52% cov
    • Alignment Length
      21 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809353
      NG_011513
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      216,617 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NG_011513
      0.01% cov
    • Alignment Length
      21 bp
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:334348854
      XM_001377586
      1 of 2 hits reported for Monodelphis domestica.
    • Hit length
      4,381 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_001377586
      0.48% cov
    • Alignment Length
      21 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332866311
      XM_001163417
    • Hit length
      5,332 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_001163417
      0.39% cov
    • Alignment Length
      21 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332206610
      XM_003252343
    • Hit length
      5,140 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_003252343
      0.41% cov
    • Alignment Length
      21 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301756331
      XM_002913968
    • Hit length
      4,308 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_002913968
      0.49% cov
    • Alignment Length
      21 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297681135
      XM_002818276
    • Hit length
      5,620 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_002818276
      0.37% cov
    • Alignment Length
      21 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136328
      NM_001032887
    • Hit length
      3,852 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_001032887
      0.55% cov
    • Alignment Length
      21 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
10
Length
20
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
synthetic oligonucleotide
Determined organism
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50978983
      NM_001003215
      1 of 8 hits reported for Canis lupus familiaris.
    • Hit length
      4,317 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_001003215
      0.46% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:8926216
      AF269224
    • Hit length
      4,045 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AF269224
      0.49% cov
    • Alignment Length
      20 bp
Occurrence
7 times in PatSeqDB
Tools

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