Compositions And Methods For The Detection Of Hiv-1/hiv-2 Infection.

  • Published: Mar 16, 2011
  • Earliest Priority: Sep 08 2004
  • Family: 17
  • Cited Works: 99
  • Cited by: 0
  • Cites: 68
  • Sequences: 141
  • Additional Info: Cited Works
Data obtained from: NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings DDBJ Pat
141 sequences found in this patent (in total)

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Download sequences in fasta format: 139 peptides 2 DNAs

Displaying 1 - 10 of 141 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
52
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:166025982
      ABY78301
      1 of 25 hits reported for Human immunodeficiency virus 1.
    • Hit length
      501 aa
    • E Value
      6.16E-17
    • BLAST Score
      91.7 bits
    • Similarity
      92.16%
    • Coverage
      98.08%
    • Alignment (schematic)

      SEQ ID NO 1
      98.08% cov
      ABY78301
      9.98% cov
    • Alignment Length
      51 aa
    • CIGAR string
      9MN8MDMN8MN21M1H mismatches: 3 - insertions: 0 - deletions: 1
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
2
Length
50
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:225056139
      ACN80876
      1 of 21 hits reported for Human immunodeficiency virus 1.
    • Hit length
      500 aa
    • E Value
      2.15E-20
    • BLAST Score
      102.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACN80876
      10% cov
    • Alignment Length
      50 aa
    • CIGAR string
      50M mismatches: 0 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)

    Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)

    • Public DB hit
      GI:120839
      P12493
    • Hit length
      500 aa
    • E Value
      2.22E-20
    • BLAST Score
      102.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      P12493
      10% cov
    • Alignment Length
      50 aa
  • HIV-1 vector pNL-DT5R

    HIV-1 vector pNL-DT5R

    • Public DB hit
      GI:116062026
      BAF34641
    • Hit length
      498 aa
    • E Value
      2.27E-20
    • BLAST Score
      102.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      BAF34641
      10.04% cov
    • Alignment Length
      50 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:42540975
      AAS19377
      1 of 2 hits reported for synthetic construct.
    • Hit length
      500 aa
    • E Value
      3.72E-20
    • BLAST Score
      102.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAS19377
      10% cov
    • Alignment Length
      50 aa
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
3
Length
52
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:166025982
      ABY78301
      1 of 25 hits reported for Human immunodeficiency virus 1.
    • Hit length
      501 aa
    • E Value
      1.54E-17
    • BLAST Score
      93.6 bits
    • Similarity
      92.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ABY78301
      10.18% cov
    • Alignment Length
      52 aa
    • CIGAR string
      9MN8MDMN8MN22M mismatches: 3 - insertions: 0 - deletions: 1
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
4
Length
49
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:113706853
      ABI36530
      1 of 24 hits reported for Human immunodeficiency virus 1.
    • Hit length
      499 aa
    • E Value
      1.16E-17
    • BLAST Score
      94 bits
    • Similarity
      93.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ABI36530
      9.82% cov
    • Alignment Length
      49 aa
    • CIGAR string
      22MN4MN18MN2M mismatches: 3 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus type 1 (ELI ISOLATE)

    Human immunodeficiency virus type 1 (ELI ISOLATE)

    • Public DB hit
      GI:120834
      P04592
    • Hit length
      500 aa
    • E Value
      4.53E-17
    • BLAST Score
      92 bits
    • Similarity
      91.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      P04592
      9.8% cov
    • Alignment Length
      49 aa
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
5
Length
49
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:86277597
      ABC88318
      1 of 25 hits reported for Human immunodeficiency virus 1.
    • Hit length
      499 aa
    • E Value
      1.34E-18
    • BLAST Score
      97.1 bits
    • Similarity
      97.96%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      ABC88318
      9.82% cov
    • Alignment Length
      49 aa
    • CIGAR string
      24MN2MN10MN10M mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
32 times in PatSeqDB
Tools
SEQ ID NO
6
Length
52
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:326370646
      ADZ56426
      1 of 25 hits reported for Human immunodeficiency virus 1.
    • Hit length
      499 aa
    • E Value
      3.61E-18
    • BLAST Score
      95.5 bits
    • Similarity
      94.23%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ADZ56426
      10.22% cov
    • Alignment Length
      52 aa
    • CIGAR string
      18MDM2N7MN22M mismatches: 3 - insertions: 0 - deletions: 1
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
7
Length
51
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:70905400
      AAZ14762
      1 of 22 hits reported for Human immunodeficiency virus 1.
    • Hit length
      500 aa
    • E Value
      1.9E-18
    • BLAST Score
      96.7 bits
    • Similarity
      96.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AAZ14762
      10% cov
    • Alignment Length
      51 aa
    • CIGAR string
      18MNMD30M mismatches: 1 - insertions: 0 - deletions: 1
  • Human immunodeficiency virus type 1 (CDC-451 ISOLATE)

    Human immunodeficiency virus type 1 (CDC-451 ISOLATE)

    • Public DB hit
      GI:120832
      P05887
    • Hit length
      500 aa
    • E Value
      7.67E-18
    • BLAST Score
      94.4 bits
    • Similarity
      96.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      P05887
      10% cov
    • Alignment Length
      51 aa
  • HIV-1 M:B_89.6

    HIV-1 M:B_89.6

    • Public DB hit
      GI:75642719
      Q73367
    • Hit length
      500 aa
    • E Value
      9.69E-18
    • BLAST Score
      94 bits
    • Similarity
      94.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      Q73367
      10% cov
    • Alignment Length
      51 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:42540975
      AAS19377
    • Hit length
      500 aa
    • E Value
      9.77E-18
    • BLAST Score
      94 bits
    • Similarity
      94.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AAS19377
      10% cov
    • Alignment Length
      51 aa
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
8
Length
47
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:328834524
      AEB52924
      1 of 25 hits reported for Human immunodeficiency virus 1.
    • Hit length
      507 aa
    • E Value
      4.16E-16
    • BLAST Score
      88.6 bits
    • Similarity
      97.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AEB52924
      9.07% cov
    • Alignment Length
      47 aa
    • CIGAR string
      18MD2MN7MN10MN6M mismatches: 3 - insertions: 0 - deletions: 1
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
9
Length
33
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:320410338
      ADW26929
      1 of 25 hits reported for Human immunodeficiency virus 1.
    • Hit length
      500 aa
    • E Value
      1.74E-7
    • BLAST Score
      60.1 bits
    • Similarity
      93.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ADW26929
      6.4% cov
    • Alignment Length
      33 aa
    • CIGAR string
      21MD7MN3M mismatches: 1 - insertions: 0 - deletions: 1
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
10
Length
31
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:326370646
      ADZ56426
      1 of 25 hits reported for Human immunodeficiency virus 1.
    • Hit length
      499 aa
    • E Value
      8.46E-8
    • BLAST Score
      61.2 bits
    • Similarity
      93.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ADZ56426
      6.21% cov
    • Alignment Length
      31 aa
    • CIGAR string
      M2N7MN20M mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
16 times in PatSeqDB
Tools

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