Collapsin Response Mediator Protein-1

  • Published: Apr 8, 2008
  • Earliest Priority: Jun 26 2001
  • Family: 10
  • Cited Works: 104
  • Cited by: 6
  • Cites: 5
  • Sequences: 9
  • Additional Info: Cited Works Full text
Data obtained from: EMBL-EBI Pat USPTO Fulltext DDBJ Pat
9 sequences found in this patent (in total)

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Download sequences in fasta format: 1 peptide 8 nucleotides

Displaying 9 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
1,719
Sequence Type
nucleotide
Locations
Claims, Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:1330237
      D78012
      1 of 13 hits reported for Homo sapiens.
    • Hit length
      2,842 bp
    • E Value
      0E0
    • BLAST Score
      3,175.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      D78012
      60.49% cov
    • Alignment Length
      1,719 bp
    • CIGAR string
      1719M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123998128
      DQ895740
      1 of 6 hits reported for synthetic construct.
    • Hit length
      1,759 bp
    • E Value
      0E0
    • BLAST Score
      3,166.3 bits
    • Similarity
      99.94%
    • Coverage
      99.88%
    • Alignment (schematic)

      SEQ ID NO 1
      99.88% cov
      DQ895740
      97.61% cov
    • Alignment Length
      1,717 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819047
      XM_003310238
    • Hit length
      3,166 bp
    • E Value
      0E0
    • BLAST Score
      3,072.1 bits
    • Similarity
      99.64%
    • Coverage
      97.79%
    • Alignment (schematic)

      SEQ ID NO 1
      97.79% cov
      XM_003310238
      53.1% cov
    • Alignment Length
      1,681 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332218751
      XM_003258474
    • Hit length
      3,034 bp
    • E Value
      0E0
    • BLAST Score
      3,024.1 bits
    • Similarity
      98.43%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_003258474
      56.56% cov
    • Alignment Length
      1,719 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297292262
      XM_001093945
    • Hit length
      2,757 bp
    • E Value
      0E0
    • BLAST Score
      2,948.4 bits
    • Similarity
      97.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_001093945
      62.35% cov
    • Alignment Length
      1,719 bp
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
2
Length
572
Sequence Type
peptide
Locations
Claims, Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4503051
      NP_001304
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      572 aa
    • E Value
      0E0
    • BLAST Score
      1,187.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001304
      100% cov
    • Alignment Length
      572 aa
    • CIGAR string
      572M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30583791
      AAP36144
    • Hit length
      573 aa
    • E Value
      0E0
    • BLAST Score
      1,187.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAP36144
      99.83% cov
    • Alignment Length
      572 aa
    • CIGAR string
      572M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109073680
      XP_001093945
      1 of 3 hits reported for Macaca mulatta.
    • Hit length
      572 aa
    • E Value
      0E0
    • BLAST Score
      1,178.3 bits
    • Similarity
      99.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001093945
      100% cov
    • Alignment Length
      572 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:300795989
      NP_001178950
    • Hit length
      572 aa
    • E Value
      0E0
    • BLAST Score
      1,162.1 bits
    • Similarity
      98.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001178950
      100% cov
    • Alignment Length
      572 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332218752
      XP_003258522
    • Hit length
      571 aa
    • E Value
      0E0
    • BLAST Score
      1,158.3 bits
    • Similarity
      98.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003258522
      100% cov
    • Alignment Length
      572 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:1518520
      AAB07042
      1 of 3 hits reported for Rattus norvegicus.
    • Hit length
      572 aa
    • E Value
      0E0
    • BLAST Score
      1,158.3 bits
    • Similarity
      98.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAB07042
      100% cov
    • Alignment Length
      572 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819048
      XP_003310286
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      686 aa
    • E Value
      0E0
    • BLAST Score
      1,156.4 bits
    • Similarity
      100%
    • Coverage
      97.73%
    • Alignment (schematic)

      SEQ ID NO 2
      97.73% cov
      XP_003310286
      81.49% cov
    • Alignment Length
      559 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:40068507
      NP_031791
      1 of 2 hits reported for Mus musculus.
    • Hit length
      572 aa
    • E Value
      0E0
    • BLAST Score
      1,156 bits
    • Similarity
      98.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_031791
      100% cov
    • Alignment Length
      572 aa
Occurrence
131 times in PatSeqDB
Tools
SEQ ID NO
3
Length
20
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:62422567
      NM_001313
      1 of 9 hits reported for Homo sapiens.
    • Hit length
      3,046 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_001313
      0.66% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
4
Length
21
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819047
      XM_003310238
      1 of 3 hits reported for Pan troglodytes.
    • Hit length
      3,166 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_003310238
      0.66% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332218751
      XM_003258474
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      3,034 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_003258474
      0.69% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297673093
      XM_002814564
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      1,685 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002814564
      1.25% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297292263
      XM_002804011
      1 of 6 hits reported for Macaca mulatta.
    • Hit length
      2,695 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002804011
      0.78% cov
    • Alignment Length
      21 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:62422570
      NM_001014809
      1 of 12 hits reported for Homo sapiens.
    • Hit length
      3,155 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_001014809
      0.67% cov
    • Alignment Length
      21 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
5
Length
31
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
6
Length
29
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
7
Length
22
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335307953
      XM_003128833
      1 of 4 hits reported for Sus scrofa.
    • Hit length
      1,174 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003128833
      1.87% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:334313515
      XM_003339866
      1 of 4 hits reported for Monodelphis domestica.
    • Hit length
      1,719 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003339866
      1.28% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819047
      XM_003310238
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      3,166 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003310238
      0.69% cov
    • Alignment Length
      22 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332218751
      XM_003258474
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      3,034 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003258474
      0.73% cov
    • Alignment Length
      22 bp
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:302148511
      NM_012932
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      2,846 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_012932
      0.77% cov
    • Alignment Length
      22 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301777561
      XM_002924153
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      2,283 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002924153
      0.96% cov
    • Alignment Length
      22 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297292263
      XM_002804011
      1 of 5 hits reported for Macaca mulatta.
    • Hit length
      2,695 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002804011
      0.82% cov
    • Alignment Length
      22 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:62422570
      NM_001014809
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      3,155 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_001014809
      0.7% cov
    • Alignment Length
      22 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168149363
      CU674102
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,209 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CU674102
      1.82% cov
    • Alignment Length
      22 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
8
Length
24
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819047
      XM_003310238
      1 of 3 hits reported for Pan troglodytes.
    • Hit length
      3,166 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_003310238
      0.76% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332218751
      XM_003258474
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      3,034 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_003258474
      0.79% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297292263
      XM_002804011
      1 of 6 hits reported for Macaca mulatta.
    • Hit length
      2,695 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_002804011
      0.89% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296196920
      XM_002806672
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      3,125 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_002806672
      0.77% cov
    • Alignment Length
      24 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:62422570
      NM_001014809
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      3,155 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001014809
      0.76% cov
    • Alignment Length
      24 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168149363
      CU674102
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,209 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CU674102
      1.99% cov
    • Alignment Length
      24 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:55846713
      AY650329
    • Hit length
      1,652 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY650329
      1.45% cov
    • Alignment Length
      24 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
9
Length
29
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819047
      XM_003310238
      1 of 3 hits reported for Pan troglodytes.
    • Hit length
      3,166 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_003310238
      0.92% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332218751
      XM_003258474
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      3,034 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_003258474
      0.96% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:62422570
      NM_001014809
      1 of 16 hits reported for Homo sapiens.
    • Hit length
      3,155 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_001014809
      0.92% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168149363
      CU674102
      1 of 4 hits reported for synthetic construct.
    • Hit length
      1,209 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CU674102
      2.4% cov
    • Alignment Length
      29 bp
Occurrence
5 times in PatSeqDB
Tools

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