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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
14 sequences found in this patent (in total)

Displaying 1 - 10 of 14 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
342
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:291045269
      NM_003332
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      608 bp
    • E Value
      4.4E-178
    • BLAST Score
      632.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_003332
      56.25% cov
    • Alignment Length
      342 bp
    • CIGAR string
      342M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123995196
      DQ894274
      1 of 6 hits reported for synthetic construct.
    • Hit length
      382 bp
    • E Value
      5.7E-177
    • BLAST Score
      629 bits
    • Similarity
      100%
    • Coverage
      99.42%
    • Alignment (schematic)

      SEQ ID NO 1
      99.42% cov
      DQ894274
      89.01% cov
    • Alignment Length
      340 bp
    • CIGAR string
      340M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:134288876
      NM_001083623
    • Hit length
      415 bp
    • E Value
      9.6E-170
    • BLAST Score
      605 bits
    • Similarity
      98.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_001083623
      82.41% cov
    • Alignment Length
      342 bp
    • CIGAR string
      57MN55MN91MN113M2N21M mismatches: 5 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297704502
      XM_002829091
    • Hit length
      595 bp
    • E Value
      9.67E-165
    • BLAST Score
      588.4 bits
    • Similarity
      97.66%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_002829091
      57.48% cov
    • Alignment Length
      342 bp
    • CIGAR string
      57MN9MN73MN66MN15MN30MN4MN62MN18M mismatches: 8 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136298
      NM_001032867
    • Hit length
      525 bp
    • E Value
      4.5E-163
    • BLAST Score
      582.8 bits
    • Similarity
      97.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_001032867
      65.14% cov
    • Alignment Length
      342 bp
    • CIGAR string
      8MN48MN83MN4MN3MN19MN8MN80MN68MN12M mismatches: 9 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262115
      XM_003280064
    • Hit length
      595 bp
    • E Value
      4.53E-158
    • BLAST Score
      566.2 bits
    • Similarity
      96.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_003280064
      57.48% cov
    • Alignment Length
      343 bp
    • CIGAR string
      29MN11MN3MN10MD2MI41MN40MN4MN23MN8MN50MN78MN32M mismatches: 10 - insertions: 1 - deletions: 1
Occurrence
49 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
113
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4507755
      NP_003323
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      113 aa
    • E Value
      3.76E-57
    • BLAST Score
      224.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_003323
      100% cov
    • Alignment Length
      113 aa
    • CIGAR string
      113M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136299
      NP_001028039
    • Hit length
      113 aa
    • E Value
      5.25E-56
    • BLAST Score
      221.1 bits
    • Similarity
      99.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001028039
      100% cov
    • Alignment Length
      113 aa
    • CIGAR string
      19MN27MN65M mismatches: 2 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262116
      XP_003280112
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      113 aa
    • E Value
      1.69E-50
    • BLAST Score
      203 bits
    • Similarity
      99.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003280112
      100% cov
    • Alignment Length
      113 aa
    • CIGAR string
      19MN13MN13MN55MN9M mismatches: 4 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:134288877
      NP_001077092
    • Hit length
      113 aa
    • E Value
      2.36E-50
    • BLAST Score
      202.6 bits
    • Similarity
      97.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001077092
      100% cov
    • Alignment Length
      113 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297704503
      XP_002829137
    • Hit length
      113 aa
    • E Value
      1.84E-49
    • BLAST Score
      199.5 bits
    • Similarity
      97.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002829137
      100% cov
    • Alignment Length
      113 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296233609
      XP_002762076
    • Hit length
      112 aa
    • E Value
      2.38E-47
    • BLAST Score
      192.6 bits
    • Similarity
      97.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002762076
      100% cov
    • Alignment Length
      113 aa
  • Bos indicus

    Bos indicus

    • Public DB hit
      GI:134289411
      ABO69921
    • Hit length
      109 aa
    • E Value
      6.24E-40
    • BLAST Score
      167.9 bits
    • Similarity
      84.96%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ABO69921
      100% cov
    • Alignment Length
      113 aa
  • Bos gaurus

    Bos gaurus

    • Public DB hit
      GI:134289579
      ABO70005
    • Hit length
      109 aa
    • E Value
      4.04E-39
    • BLAST Score
      165.2 bits
    • Similarity
      84.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ABO70005
      100% cov
    • Alignment Length
      113 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:134289455
      ABO69943
      1 of 2 hits reported for Bos taurus.
    • Hit length
      109 aa
    • E Value
      4.74E-39
    • BLAST Score
      164.9 bits
    • Similarity
      84.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ABO69943
      100% cov
    • Alignment Length
      113 aa
Occurrence
559 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
628
Type
nucleotide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:291045269
      NM_003332
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      608 bp
    • E Value
      0E0
    • BLAST Score
      1,079.6 bits
    • Similarity
      99.66%
    • Coverage
      93.79%
    • Alignment (schematic)

      SEQ ID NO 3
      93.79% cov
      NM_003332
      97.04% cov
    • Alignment Length
      590 bp
    • CIGAR string
      465MN108MI15M39H mismatches: 1 - insertions: 1 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297704502
      XM_002829091
    • Hit length
      595 bp
    • E Value
      0E0
    • BLAST Score
      983.5 bits
    • Similarity
      97.56%
    • Coverage
      91.4%
    • Alignment (schematic)

      SEQ ID NO 3
      91.4% cov
      XM_002829091
      96.3% cov
    • Alignment Length
      574 bp
    • CIGAR string
      123MN9MN73MN66MN15MN30MN4MN62MN42MD32MN26MN10MN6MN38MN24M54H mismatches: 13 - insertions: 0 - deletions: 1
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262115
      XM_003280064
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      595 bp
    • E Value
      0E0
    • BLAST Score
      968.8 bits
    • Similarity
      97.04%
    • Coverage
      91.4%
    • Alignment (schematic)

      SEQ ID NO 3
      91.4% cov
      XM_003280064
      96.47% cov
    • Alignment Length
      575 bp
    • CIGAR string
      28MN31MN34MN11MN3MN10MD2MI41MN40MN4MN23MN8MN50MN78MN56MN32MN75MN32M54H mismatches: 15 - insertions: 1 - deletions: 1
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136298
      NM_001032867
    • Hit length
      525 bp
    • E Value
      0E0
    • BLAST Score
      876.4 bits
    • Similarity
      96.93%
    • Coverage
      82.96%
    • Alignment (schematic)

      SEQ ID NO 3
      82.96% cov
      NM_001032867
      99.24% cov
    • Alignment Length
      521 bp
    • CIGAR string
      28H46MN48MN83MN4MN3MN19MN8MN80MN68MN36MN32MN2MN23MN8MN9MN2MN34M79H mismatches: 16 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:134288876
      NM_001083623
    • Hit length
      415 bp
    • E Value
      0E0
    • BLAST Score
      725 bits
    • Similarity
      98.31%
    • Coverage
      65.76%
    • Alignment (schematic)

      SEQ ID NO 3
      65.76% cov
      NM_001083623
      99.52% cov
    • Alignment Length
      413 bp
    • CIGAR string
      52H71MN55MN91MN113M2N24MN20MN32M163H mismatches: 7 - insertions: 0 - deletions: 0
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
18
Type
peptide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194215341
      XP_001493427
    • Hit length
      121 aa
    • E Value
      1.37E-1
    • BLAST Score
      40 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001493427
      14.88% cov
    • Alignment Length
      18 aa
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:291045272
      NP_001166985
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      102 aa
    • E Value
      1.48E-1
    • BLAST Score
      40 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001166985
      17.65% cov
    • Alignment Length
      18 aa
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:134288877
      NP_001077092
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      113 aa
    • E Value
      1.52E-1
    • BLAST Score
      40 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001077092
      15.93% cov
    • Alignment Length
      18 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301771091
      XP_002920971
    • Hit length
      130 aa
    • E Value
      1.53E-1
    • BLAST Score
      40 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002920971
      13.85% cov
    • Alignment Length
      18 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296233609
      XP_002762076
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      112 aa
    • E Value
      1.59E-1
    • BLAST Score
      39.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002762076
      16.07% cov
    • Alignment Length
      18 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136299
      NP_001028039
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      113 aa
    • E Value
      1.59E-1
    • BLAST Score
      39.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001028039
      15.93% cov
    • Alignment Length
      18 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297704503
      XP_002829137
    • Hit length
      113 aa
    • E Value
      1.61E-1
    • BLAST Score
      39.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002829137
      15.93% cov
    • Alignment Length
      18 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:258547210
      ACV74254
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      111 aa
    • E Value
      1.82E-1
    • BLAST Score
      39.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACV74254
      16.22% cov
    • Alignment Length
      18 aa
  • Microcebus murinus

    Microcebus murinus

    • Public DB hit
      GI:268038917
      ACY91940
    • Hit length
      113 aa
    • E Value
      2.81E-1
    • BLAST Score
      38.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACY91940
      15.93% cov
    • Alignment Length
      18 aa
  • Bos gaurus

    Bos gaurus

    • Public DB hit
      GI:134289579
      ABO70005
    • Hit length
      109 aa
    • E Value
      2.88E-1
    • BLAST Score
      38.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ABO70005
      16.51% cov
    • Alignment Length
      18 aa
Occurrence
22 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
345
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Not specified

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:40254570
      NM_011662
      1 of 5 hits reported for Mus musculus.
    • Hit length
      586 bp
    • E Value
      9.56E-180
    • BLAST Score
      638.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_011662
      58.87% cov
    • Alignment Length
      345 bp
    • CIGAR string
      345M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:47058975
      NM_212525
      1 of 3 hits reported for Rattus norvegicus.
    • Hit length
      545 bp
    • E Value
      4.74E-133
    • BLAST Score
      483.1 bits
    • Similarity
      91.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_212525
      63.3% cov
    • Alignment Length
      345 bp
    • CIGAR string
      8MNM2N15MN63MN2MN4MN7MN5MN2MN8MN20MN5MN9MN10MN2MN8MN26MN5MNMN6MN2MN2MN14MN5MN14MN26MN35MN12M mismatches: 28 - insertions: 0 - deletions: 0
Occurrence
34 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
114
Type
peptide
Locations
Claims, Summary

Declared organism:
Not specified

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:6755915
      NP_035792
      1 of 3 hits reported for Mus musculus.
    • Hit length
      114 aa
    • E Value
      1.15E-58
    • BLAST Score
      229.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_035792
      100% cov
    • Alignment Length
      114 aa
    • CIGAR string
      114M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:47058976
      NP_997690
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      114 aa
    • E Value
      9.01E-54
    • BLAST Score
      213.8 bits
    • Similarity
      96.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_997690
      100% cov
    • Alignment Length
      114 aa
    • CIGAR string
      3MN5MN20M2NMNMN37MN3MN6MN29M mismatches: 9 - insertions: 0 - deletions: 0
  • Microcebus murinus

    Microcebus murinus

    • Public DB hit
      GI:268038889
      ACY91939
      1 of 2 hits reported for Microcebus murinus.
    • Hit length
      112 aa
    • E Value
      1.71E-36
    • BLAST Score
      156.4 bits
    • Similarity
      85.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ACY91939
      100% cov
    • Alignment Length
      116 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:55741821
      NP_999367
    • Hit length
      108 aa
    • E Value
      6.27E-36
    • BLAST Score
      154.5 bits
    • Similarity
      80.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_999367
      100% cov
    • Alignment Length
      114 aa
  • Bos gaurus

    Bos gaurus

    • Public DB hit
      GI:134289579
      ABO70005
    • Hit length
      109 aa
    • E Value
      2.44E-35
    • BLAST Score
      152.5 bits
    • Similarity
      80.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ABO70005
      100% cov
    • Alignment Length
      115 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:60390954
      Q95J79
      1 of 4 hits reported for Bos taurus.
    • Hit length
      108 aa
    • E Value
      4.1E-35
    • BLAST Score
      151.8 bits
    • Similarity
      80.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      Q95J79
      100% cov
    • Alignment Length
      114 aa
  • Bos indicus

    Bos indicus

    • Public DB hit
      GI:134289411
      ABO69921
    • Hit length
      109 aa
    • E Value
      4.89E-35
    • BLAST Score
      151.8 bits
    • Similarity
      80.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ABO69921
      100% cov
    • Alignment Length
      115 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296233609
      XP_002762076
    • Hit length
      112 aa
    • E Value
      2.21E-34
    • BLAST Score
      149.4 bits
    • Similarity
      82.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002762076
      100% cov
    • Alignment Length
      114 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:38158005
      NP_937758
    • Hit length
      112 aa
    • E Value
      6.44E-34
    • BLAST Score
      147.9 bits
    • Similarity
      81.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_937758
      100% cov
    • Alignment Length
      114 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136299
      NP_001028039
    • Hit length
      113 aa
    • E Value
      2.47E-33
    • BLAST Score
      146 bits
    • Similarity
      81.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_001028039
      100% cov
    • Alignment Length
      115 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:134288877
      NP_001077092
    • Hit length
      113 aa
    • E Value
      7.8E-33
    • BLAST Score
      144.4 bits
    • Similarity
      80.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_001077092
      100% cov
    • Alignment Length
      115 aa
Occurrence
57 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
451
Type
nucleotide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:56117853
      NM_001007469
      1 of 11 hits reported for Homo sapiens.
    • Hit length
      521 bp
    • E Value
      0E0
    • BLAST Score
      804.4 bits
    • Similarity
      99.33%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 7
      98.45% cov
      NM_001007469
      85.41% cov
    • Alignment Length
      445 bp
    • CIGAR string
      6H393MI8MN32MN9M1H mismatches: 2 - insertions: 1 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332855410
      XM_003316331
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      540 bp
    • E Value
      0E0
    • BLAST Score
      782.3 bits
    • Similarity
      98.43%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 7
      98.45% cov
      XM_003316331
      82.41% cov
    • Alignment Length
      445 bp
    • CIGAR string
      6H118MN50MN99MN19MN103MI8MN32MN9M1H mismatches: 6 - insertions: 1 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297704500
      XM_002829092
    • Hit length
      612 bp
    • E Value
      0E0
    • BLAST Score
      743.5 bits
    • Similarity
      96.87%
    • Coverage
      98%
    • Alignment (schematic)

      SEQ ID NO 7
      98% cov
      XM_002829092
      72.88% cov
    • Alignment Length
      447 bp
    • CIGAR string
      8H64MN51MN30MN19MN35MN84MN7M3I47MN47MI8MD5MI27MN9M1H mismatches: 8 - insertions: 5 - deletions: 1
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262119
      XM_003280066
    • Hit length
      611 bp
    • E Value
      0E0
    • BLAST Score
      715.8 bits
    • Similarity
      95.74%
    • Coverage
      98%
    • Alignment (schematic)

      SEQ ID NO 7
      98% cov
      XM_003280066
      73% cov
    • Alignment Length
      446 bp
    • CIGAR string
      8H43MN14MN5M2N39MN10MN18MN31MN41MN26MN59MNM2IMI36MN7MN47MI8MN32MN9M1H mismatches: 15 - insertions: 4 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:307686328
      AB590940
    • Hit length
      293 bp
    • E Value
      2.25E-142
    • BLAST Score
      514.5 bits
    • Similarity
      100%
    • Coverage
      61.64%
    • Alignment (schematic)

      SEQ ID NO 7
      61.64% cov
      AB590940
      94.88% cov
    • Alignment Length
      278 bp
    • CIGAR string
      60H278M113H mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296233606
      XM_002762029
    • Hit length
      279 bp
    • E Value
      3.1E-96
    • BLAST Score
      361.2 bits
    • Similarity
      90.14%
    • Coverage
      61.86%
    • Alignment (schematic)

      SEQ ID NO 7
      61.86% cov
      XM_002762029
      100% cov
    • Alignment Length
      284 bp
    • CIGAR string
      62H3MN3MN35MIMNMND2MIMD4MN5MN5MN9MDM2D3MN2MN9MN14MN15MN34MN13MN3MN11MN20MN26M3I24MN12M110H mismatches: 18 - insertions: 5 - deletions: 5
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
92
Type
peptide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:56117854
      NP_001007470
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      92 aa
    • E Value
      6.58E-44
    • BLAST Score
      181 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001007470
      100% cov
    • Alignment Length
      92 aa
    • CIGAR string
      92M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332855411
      XP_003316379
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      92 aa
    • E Value
      1.75E-43
    • BLAST Score
      179.5 bits
    • Similarity
      98.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_003316379
      100% cov
    • Alignment Length
      92 aa
    • CIGAR string
      71MN20M mismatches: 1 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262120
      XP_003280114
    • Hit length
      93 aa
    • E Value
      1.95E-40
    • BLAST Score
      169.5 bits
    • Similarity
      95.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_003280114
      100% cov
    • Alignment Length
      93 aa
    • CIGAR string
      MNMN13MN9MN52MI12M mismatches: 4 - insertions: 1 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297704501
      XP_002829138
    • Hit length
      93 aa
    • E Value
      2.14E-40
    • BLAST Score
      169.5 bits
    • Similarity
      96.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002829138
      100% cov
    • Alignment Length
      93 aa
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:75053215
      Q70RD5
    • Hit length
      78 aa
    • E Value
      1.59E-31
    • BLAST Score
      139.8 bits
    • Similarity
      83.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      Q70RD5
      100% cov
    • Alignment Length
      92 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136231
      NP_001028007
    • Hit length
      79 aa
    • E Value
      3.07E-29
    • BLAST Score
      132.5 bits
    • Similarity
      81.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001028007
      100% cov
    • Alignment Length
      93 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296233607
      XP_002762075
    • Hit length
      92 aa
    • E Value
      1.91E-28
    • BLAST Score
      129.8 bits
    • Similarity
      88.75%
    • Coverage
      85.87%
    • Alignment (schematic)

      SEQ ID NO 8
      85.87% cov
      XP_002762075
      85.87% cov
    • Alignment Length
      80 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:219519586
      AAI45546
      1 of 2 hits reported for Mus musculus.
    • Hit length
      78 aa
    • E Value
      7.58E-19
    • BLAST Score
      97.8 bits
    • Similarity
      77.27%
    • Coverage
      95.65%
    • Alignment (schematic)

      SEQ ID NO 8
      95.65% cov
      AAI45546
      94.87% cov
    • Alignment Length
      88 aa
Occurrence
732 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
403
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Not specified

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:255918217
      NM_011827
      1 of 7 hits reported for Mus musculus.
    • Hit length
      452 bp
    • E Value
      0E0
    • BLAST Score
      745.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_011827
      89.16% cov
    • Alignment Length
      403 bp
    • CIGAR string
      403M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
79
Type
peptide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:93102419
      NP_035957
      1 of 3 hits reported for Mus musculus.
    • Hit length
      79 aa
    • E Value
      1.68E-36
    • BLAST Score
      156.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_035957
      100% cov
    • Alignment Length
      79 aa
    • CIGAR string
      79M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:54312124
      NP_001005900
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      79 aa
    • E Value
      2.1E-31
    • BLAST Score
      139.4 bits
    • Similarity
      92.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_001005900
      100% cov
    • Alignment Length
      79 aa
    • CIGAR string
      MN3MN4MN9M2N7MN29MNMN17M mismatches: 8 - insertions: 0 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:47523082
      NP_999307
    • Hit length
      79 aa
    • E Value
      3.69E-26
    • BLAST Score
      122.1 bits
    • Similarity
      87.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_999307
      100% cov
    • Alignment Length
      79 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136231
      NP_001028007
    • Hit length
      79 aa
    • E Value
      4.25E-25
    • BLAST Score
      118.6 bits
    • Similarity
      86.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_001028007
      100% cov
    • Alignment Length
      79 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262120
      XP_003280114
    • Hit length
      93 aa
    • E Value
      7.13E-25
    • BLAST Score
      117.9 bits
    • Similarity
      76.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_003280114
      100% cov
    • Alignment Length
      93 aa
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:75053215
      Q70RD5
    • Hit length
      78 aa
    • E Value
      7.43E-25
    • BLAST Score
      117.9 bits
    • Similarity
      87.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      Q70RD5
      100% cov
    • Alignment Length
      79 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297704501
      XP_002829138
    • Hit length
      93 aa
    • E Value
      8.5E-24
    • BLAST Score
      114.4 bits
    • Similarity
      75.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002829138
      100% cov
    • Alignment Length
      93 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291412028
      XP_002722272
    • Hit length
      79 aa
    • E Value
      2.45E-21
    • BLAST Score
      105.9 bits
    • Similarity
      86.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002722272
      100% cov
    • Alignment Length
      79 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332855409
      XP_001159643
    • Hit length
      93 aa
    • E Value
      3E-20
    • BLAST Score
      102.4 bits
    • Similarity
      77.53%
    • Coverage
      94.94%
    • Alignment (schematic)

      SEQ ID NO 10
      94.94% cov
      XP_001159643
      95.7% cov
    • Alignment Length
      89 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:15826850
      NP_055081
    • Hit length
      93 aa
    • E Value
      3.63E-20
    • BLAST Score
      102.1 bits
    • Similarity
      77.53%
    • Coverage
      94.94%
    • Alignment (schematic)

      SEQ ID NO 10
      94.94% cov
      NP_055081
      95.7% cov
    • Alignment Length
      89 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296233607
      XP_002762075
    • Hit length
      92 aa
    • E Value
      6.2E-19
    • BLAST Score
      98.2 bits
    • Similarity
      89.83%
    • Coverage
      74.68%
    • Alignment (schematic)

      SEQ ID NO 10
      74.68% cov
      XP_002762075
      64.13% cov
    • Alignment Length
      59 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:116004177
      NP_001070445
    • Hit length
      79 aa
    • E Value
      7.08E-19
    • BLAST Score
      97.8 bits
    • Similarity
      83.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_001070445
      100% cov
    • Alignment Length
      79 aa
Occurrence
52 times in PatSeqDB
Tools
PatSeq Finder

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