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Search for Biological Sequences disclosed in Patents

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Data obtained from: EPO Sequence Listings
9 sequences found in this patent (in total)

Displaying 9 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
955
Type
DNA
Locations
Claims, Fulltext

Declared organism:
Not specified

Determined organism:
  • Rhodococcus sp. IGTS8

    Rhodococcus sp. IGTS8

    • Public DB hit
      GI:2944379
      AF048979
    • Hit length
      955 bp
    • E Value
      0E0
    • BLAST Score
      1,764.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF048979
      100% cov
    • Alignment Length
      955 bp
    • CIGAR string
      955M mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis PR4

    Rhodococcus erythropolis PR4

    • Public DB hit
      GI:226182604
      AP008957
    • Hit length
      6,516,310 bp
    • E Value
      0E0
    • BLAST Score
      1,642.8 bits
    • Similarity
      97.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP008957
      0.01% cov
    • Alignment Length
      955 bp
    • CIGAR string
      13MN8MN27MN12MN11MN66MN17MN156MN44MN2MN161MN8MN5MN53MN26MN26MN5MN42MN61MN20MN35MN118MN17M mismatches: 22 - insertions: 0 - deletions: 0
  • Rhodococcus sp. DS-3

    Rhodococcus sp. DS-3

    • Public DB hit
      GI:91176514
      DQ444326
    • Hit length
      579 bp
    • E Value
      0E0
    • BLAST Score
      1,068.5 bits
    • Similarity
      100%
    • Coverage
      60.52%
    • Alignment (schematic)

      SEQ ID NO 1
      60.52% cov
      DQ444326
      99.83% cov
    • Alignment Length
      578 bp
    • CIGAR string
      259H578M118H mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus sp. SDUZAWQ

    Rhodococcus sp. SDUZAWQ

    • Public DB hit
      GI:55274740
      AY789135
    • Hit length
      579 bp
    • E Value
      0E0
    • BLAST Score
      1,068.5 bits
    • Similarity
      100%
    • Coverage
      60.52%
    • Alignment (schematic)

      SEQ ID NO 1
      60.52% cov
      AY789135
      99.83% cov
    • Alignment Length
      578 bp
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:148724576
      AM039688
      1 of 4 hits reported for Rhodococcus erythropolis.
    • Hit length
      579 bp
    • E Value
      0E0
    • BLAST Score
      1,057.4 bits
    • Similarity
      99.65%
    • Coverage
      60.52%
    • Alignment (schematic)

      SEQ ID NO 1
      60.52% cov
      AM039688
      99.83% cov
    • Alignment Length
      578 bp
  • Rhodococcus sp. XP

    Rhodococcus sp. XP

    • Public DB hit
      GI:45825830
      AY569038
    • Hit length
      579 bp
    • E Value
      0E0
    • BLAST Score
      990.9 bits
    • Similarity
      97.58%
    • Coverage
      60.52%
    • Alignment (schematic)

      SEQ ID NO 1
      60.52% cov
      AY569038
      99.83% cov
    • Alignment Length
      578 bp
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
192
Type
peptide
Locations
Claims, Fulltext

Declared organism:
Not specified

Determined organism:
  • Rhodococcus erythropolis PR4

    Rhodococcus erythropolis PR4

    • Public DB hit
      GI:226304073
      YP_002764031
    • Hit length
      192 aa
    • E Value
      2.26E-106
    • BLAST Score
      389 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_002764031
      100% cov
    • Alignment Length
      192 aa
    • CIGAR string
      N191M mismatches: 1 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:67508850
      CAJ00429
    • Hit length
      192 aa
    • E Value
      1.11E-105
    • BLAST Score
      386.7 bits
    • Similarity
      99.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CAJ00429
      100% cov
    • Alignment Length
      192 aa
    • CIGAR string
      N185MN5M mismatches: 2 - insertions: 0 - deletions: 0
  • Rhodococcus sp. XP

    Rhodococcus sp. XP

    • Public DB hit
      GI:45825831
      AAS77584
    • Hit length
      192 aa
    • E Value
      1.11E-104
    • BLAST Score
      383.3 bits
    • Similarity
      98.96%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAS77584
      100% cov
    • Alignment Length
      192 aa
    • CIGAR string
      N103MN6MN80M mismatches: 3 - insertions: 0 - deletions: 0
  • Rhodococcus jostii RHA1

    Rhodococcus jostii RHA1

    • Public DB hit
      GI:111021364
      YP_704336
    • Hit length
      210 aa
    • E Value
      2.19E-81
    • BLAST Score
      306.2 bits
    • Similarity
      87.96%
    • Coverage
      99.48%
    • Alignment (schematic)

      SEQ ID NO 2
      99.48% cov
      YP_704336
      89.52% cov
    • Alignment Length
      191 aa
  • Rhodococcus opacus B4

    Rhodococcus opacus B4

    • Public DB hit
      GI:226363712
      YP_002781494
    • Hit length
      194 aa
    • E Value
      1.35E-77
    • BLAST Score
      293.5 bits
    • Similarity
      87.96%
    • Coverage
      99.48%
    • Alignment (schematic)

      SEQ ID NO 2
      99.48% cov
      YP_002781494
      96.91% cov
    • Alignment Length
      191 aa
  • Rhodococcus equi ATCC 33707

    Rhodococcus equi ATCC 33707

    • Public DB hit
      GI:325675196
      ZP_08154881
    • Hit length
      184 aa
    • E Value
      2.18E-68
    • BLAST Score
      262.7 bits
    • Similarity
      82.97%
    • Coverage
      94.27%
    • Alignment (schematic)

      SEQ ID NO 2
      94.27% cov
      ZP_08154881
      98.91% cov
    • Alignment Length
      182 aa
  • Rhodococcus equi 103S

    Rhodococcus equi 103S

    • Public DB hit
      GI:312138033
      YP_004005369
    • Hit length
      166 aa
    • E Value
      4E-68
    • BLAST Score
      261.9 bits
    • Similarity
      88.27%
    • Coverage
      84.38%
    • Alignment (schematic)

      SEQ ID NO 2
      84.38% cov
      YP_004005369
      97.59% cov
    • Alignment Length
      162 aa
  • Nocardia farcinica IFM 10152

    Nocardia farcinica IFM 10152

    • Public DB hit
      GI:54022346
      YP_116588
    • Hit length
      183 aa
    • E Value
      1.34E-62
    • BLAST Score
      243.8 bits
    • Similarity
      83.93%
    • Coverage
      87.5%
    • Alignment (schematic)

      SEQ ID NO 2
      87.5% cov
      YP_116588
      91.8% cov
    • Alignment Length
      168 aa
  • Mycobacterium vanbaalenii PYR-1

    Mycobacterium vanbaalenii PYR-1

    • Public DB hit
      GI:120401375
      YP_951204
    • Hit length
      169 aa
    • E Value
      2.69E-52
    • BLAST Score
      209.5 bits
    • Similarity
      77.78%
    • Coverage
      84.38%
    • Alignment (schematic)

      SEQ ID NO 2
      84.38% cov
      YP_951204
      95.86% cov
    • Alignment Length
      162 aa
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
40
Type
peptide
Locations
Undetermined

Declared organism:
Not specified

Determined organism:
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:67508850
      CAJ00429
    • Hit length
      192 aa
    • E Value
      4.25E-13
    • BLAST Score
      78.6 bits
    • Similarity
      95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CAJ00429
      20.83% cov
    • Alignment Length
      40 aa
    • CIGAR string
      28MN9MNM mismatches: 2 - insertions: 0 - deletions: 0
  • Rhodococcus sp. XP

    Rhodococcus sp. XP

    • Public DB hit
      GI:45825831
      AAS77584
    • Hit length
      192 aa
    • E Value
      4.51E-13
    • BLAST Score
      78.6 bits
    • Similarity
      95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAS77584
      20.83% cov
    • Alignment Length
      40 aa
    • CIGAR string
      28MN9MNM mismatches: 2 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis PR4

    Rhodococcus erythropolis PR4

    • Public DB hit
      GI:226304073
      YP_002764031
    • Hit length
      192 aa
    • E Value
      4.74E-13
    • BLAST Score
      78.6 bits
    • Similarity
      95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      YP_002764031
      20.83% cov
    • Alignment Length
      40 aa
    • CIGAR string
      28MN9MNM mismatches: 2 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
19
Type
peptide
Locations
Undetermined

Declared organism:
Not specified

Determined organism:
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:67508850
      CAJ00429
    • Hit length
      192 aa
    • E Value
      2.6E-1
    • BLAST Score
      39.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAJ00429
      9.9% cov
    • Alignment Length
      19 aa
    • CIGAR string
      16MN2M mismatches: 1 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis PR4

    Rhodococcus erythropolis PR4

    • Public DB hit
      GI:226304073
      YP_002764031
      1 of 2 hits reported for Rhodococcus erythropolis PR4.
    • Hit length
      192 aa
    • E Value
      2.66E-1
    • BLAST Score
      39.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_002764031
      9.9% cov
    • Alignment Length
      19 aa
    • CIGAR string
      16MN2M mismatches: 1 - insertions: 0 - deletions: 0
  • Rhodococcus sp. XP

    Rhodococcus sp. XP

    • Public DB hit
      GI:45825831
      AAS77584
    • Hit length
      192 aa
    • E Value
      2.66E-1
    • BLAST Score
      39.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAS77584
      9.9% cov
    • Alignment Length
      19 aa
    • CIGAR string
      16MN2M mismatches: 1 - insertions: 0 - deletions: 0
  • Rhodococcus jostii RHA1

    Rhodococcus jostii RHA1

    • Public DB hit
      GI:111021364
      YP_704336
    • Hit length
      210 aa
    • E Value
      6.03E0
    • BLAST Score
      34.7 bits
    • Similarity
      94.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_704336
      9.05% cov
    • Alignment Length
      19 aa
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
7
Type
peptide
Locations
Undetermined

Declared organism:
Not specified

Determined organism:
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
10
Type
peptide
Locations
Undetermined

Declared organism:
Not specified

Determined organism:
  • Rhodococcus erythropolis PR4

    Rhodococcus erythropolis PR4

    • Public DB hit
      GI:226304073
      YP_002764031
      1 of 2 hits reported for Rhodococcus erythropolis PR4.
    • Hit length
      192 aa
    • E Value
      3.65E0
    • BLAST Score
      34.6 bits
    • Similarity
      100%
    • Coverage
      90%
    • Alignment (schematic)

      SEQ ID NO 6
      90% cov
      YP_002764031
      4.69% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus sp. XP

    Rhodococcus sp. XP

    • Public DB hit
      GI:45825831
      AAS77584
    • Hit length
      192 aa
    • E Value
      3.65E0
    • BLAST Score
      34.6 bits
    • Similarity
      100%
    • Coverage
      90%
    • Alignment (schematic)

      SEQ ID NO 6
      90% cov
      AAS77584
      4.69% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Kingella oralis ATCC 51147

    Kingella oralis ATCC 51147

    • Public DB hit
      GI:238022474
      ZP_04602900
    • Hit length
      392 aa
    • E Value
      1.04E2
    • BLAST Score
      29.5 bits
    • Similarity
      90%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ZP_04602900
      2.55% cov
    • Alignment Length
      10 aa
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
17
Type
DNA
Locations
Fulltext

Declared organism:
Not specified

Determined organism:
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
17
Type
DNA
Locations
Fulltext

Declared organism:
Not specified

Determined organism:
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
20
Type
DNA
Locations
Fulltext

Declared organism:
Not specified

Determined organism:
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder

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