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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
82 sequences found in this patent (in total)

Displaying 1 - 10 of 82 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
272
Type
peptide
Locations
Detailed Description

Declared organism:
Human immunodeficiency virus

Occurrence
29 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
819
Type
nucleotide
Locations
Detailed Description

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Vaccinia virus Copenhagen

    Vaccinia virus Copenhagen

    • Public DB hit
      GI:335317
      M35027
      1 of 2 hits reported for Vaccinia virus Copenhagen.
    • Hit length
      191,737 bp
    • E Value
      0E0
    • BLAST Score
      1,513.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      M35027
      0.43% cov
    • Alignment Length
      819 bp
    • CIGAR string
      819M mismatches: 0 - insertions: 0 - deletions: 0
  • Vaccinia virus Tian Tan

    Vaccinia virus Tian Tan

    • Public DB hit
      GI:6969640
      AF095689
    • Hit length
      189,274 bp
    • E Value
      0E0
    • BLAST Score
      1,485.8 bits
    • Similarity
      99.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AF095689
      0.43% cov
    • Alignment Length
      819 bp
    • CIGAR string
      47MN278MN141MN11MN54MN283M mismatches: 5 - insertions: 0 - deletions: 0
  • Vaccinia virus

    Vaccinia virus

    • Public DB hit
      GI:145301822
      EF175979
      1 of 17 hits reported for Vaccinia virus.
    • Hit length
      819 bp
    • E Value
      0E0
    • BLAST Score
      1,480.3 bits
    • Similarity
      99.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EF175979
      100% cov
    • Alignment Length
      819 bp
    • CIGAR string
      468MN11MN54MN76MN24MN12MN168M mismatches: 6 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:62288461
      AY965309
    • Hit length
      897 bp
    • E Value
      0E0
    • BLAST Score
      1,480.3 bits
    • Similarity
      99.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY965309
      91.3% cov
    • Alignment Length
      819 bp
  • Vaccinia virus WR

    Vaccinia virus WR

    • Public DB hit
      GI:29692106
      AY243312
    • Hit length
      194,711 bp
    • E Value
      0E0
    • BLAST Score
      1,480.3 bits
    • Similarity
      99.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY243312
      0.42% cov
    • Alignment Length
      819 bp
  • Vaccinia virus Ankara

    Vaccinia virus Ankara

    • Public DB hit
      GI:160857876
      AM501482
    • Hit length
      192,353 bp
    • E Value
      0E0
    • BLAST Score
      1,474.7 bits
    • Similarity
      99.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AM501482
      0.43% cov
    • Alignment Length
      819 bp
  • Vaccinia virus GLV-1h68

    Vaccinia virus GLV-1h68

    • Public DB hit
      GI:167412463
      EU410304
    • Hit length
      203,057 bp
    • E Value
      0E0
    • BLAST Score
      1,469.2 bits
    • Similarity
      99.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EU410304
      0.4% cov
    • Alignment Length
      819 bp
  • Rabbitpox virus

    Rabbitpox virus

    • Public DB hit
      GI:44971363
      AY484669
    • Hit length
      197,731 bp
    • E Value
      0E0
    • BLAST Score
      1,469.2 bits
    • Similarity
      99.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY484669
      0.41% cov
    • Alignment Length
      819 bp
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
353
Type
peptide
Locations
Detailed Description

Declared organism:
Human immunodeficiency virus

Occurrence
57 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
1,062
Type
nucleotide
Locations
Detailed Description

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Vaccinia virus Copenhagen

    Vaccinia virus Copenhagen

    • Public DB hit
      GI:335317
      M35027
    • Hit length
      191,737 bp
    • E Value
      0E0
    • BLAST Score
      1,962.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      M35027
      0.55% cov
    • Alignment Length
      1,062 bp
    • CIGAR string
      1062M mismatches: 0 - insertions: 0 - deletions: 0
  • Vaccinia virus

    Vaccinia virus

    • Public DB hit
      GI:60547308
      AY315831
      1 of 13 hits reported for Vaccinia virus.
    • Hit length
      1,320 bp
    • E Value
      0E0
    • BLAST Score
      1,940.1 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY315831
      80.45% cov
    • Alignment Length
      1,062 bp
    • CIGAR string
      191MN3MN19MN632MN213M mismatches: 4 - insertions: 0 - deletions: 0
  • Vaccinia virus Tian Tan

    Vaccinia virus Tian Tan

    • Public DB hit
      GI:6969640
      AF095689
    • Hit length
      189,274 bp
    • E Value
      0E0
    • BLAST Score
      1,934.6 bits
    • Similarity
      99.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AF095689
      0.56% cov
    • Alignment Length
      1,062 bp
    • CIGAR string
      191MN3MN19MN530MN101MN213M mismatches: 5 - insertions: 0 - deletions: 0
  • Cantagalo virus

    Cantagalo virus

    • Public DB hit
      GI:40794960
      AY500815
    • Hit length
      1,068 bp
    • E Value
      0E0
    • BLAST Score
      1,929 bits
    • Similarity
      99.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY500815
      99.44% cov
    • Alignment Length
      1,062 bp
  • Buffalopox virus

    Buffalopox virus

    • Public DB hit
      GI:60547316
      AY315835
    • Hit length
      1,319 bp
    • E Value
      0E0
    • BLAST Score
      1,912.4 bits
    • Similarity
      99.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY315835
      80.52% cov
    • Alignment Length
      1,062 bp
  • Vaccinia virus GLV-1h68

    Vaccinia virus GLV-1h68

    • Public DB hit
      GI:167412463
      EU410304
    • Hit length
      203,057 bp
    • E Value
      0E0
    • BLAST Score
      1,901.3 bits
    • Similarity
      99.06%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU410304
      0.52% cov
    • Alignment Length
      1,062 bp
  • Horsepox virus

    Horsepox virus

    • Public DB hit
      GI:111184167
      DQ792504
    • Hit length
      212,633 bp
    • E Value
      0E0
    • BLAST Score
      1,890.2 bits
    • Similarity
      98.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ792504
      0.5% cov
    • Alignment Length
      1,062 bp
  • Cowpox virus

    Cowpox virus

    • Public DB hit
      GI:90660233
      DQ437593
    • Hit length
      228,250 bp
    • E Value
      0E0
    • BLAST Score
      1,879.2 bits
    • Similarity
      98.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ437593
      0.47% cov
    • Alignment Length
      1,062 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:62288489
      AY965323
    • Hit length
      1,134 bp
    • E Value
      0E0
    • BLAST Score
      1,879.2 bits
    • Similarity
      98.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY965323
      93.12% cov
    • Alignment Length
      1,062 bp
  • Vaccinia virus WR

    Vaccinia virus WR

    • Public DB hit
      GI:29692106
      AY243312
    • Hit length
      194,711 bp
    • E Value
      0E0
    • BLAST Score
      1,879.2 bits
    • Similarity
      98.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY243312
      0.54% cov
    • Alignment Length
      1,062 bp
  • Rabbitpox virus

    Rabbitpox virus

    • Public DB hit
      GI:44971363
      AY484669
      1 of 2 hits reported for Rabbitpox virus.
    • Hit length
      197,731 bp
    • E Value
      0E0
    • BLAST Score
      1,873.6 bits
    • Similarity
      98.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY484669
      0.53% cov
    • Alignment Length
      1,062 bp
  • Vaccinia virus Ankara

    Vaccinia virus Ankara

    • Public DB hit
      GI:160857876
      AM501482
    • Hit length
      192,353 bp
    • E Value
      0E0
    • BLAST Score
      1,868.1 bits
    • Similarity
      98.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AM501482
      0.55% cov
    • Alignment Length
      1,062 bp
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
224
Type
peptide
Locations
Claims, Detailed Description

Declared organism:
Human immunodeficiency virus

Occurrence
49 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
675
Type
nucleotide
Locations
Detailed Description

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Vaccinia virus Copenhagen

    Vaccinia virus Copenhagen

    • Public DB hit
      GI:335317
      M35027
    • Hit length
      191,737 bp
    • E Value
      0E0
    • BLAST Score
      1,247.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      M35027
      0.35% cov
    • Alignment Length
      675 bp
    • CIGAR string
      675M mismatches: 0 - insertions: 0 - deletions: 0
  • Vaccinia virus Tian Tan

    Vaccinia virus Tian Tan

    • Public DB hit
      GI:6969640
      AF095689
    • Hit length
      189,274 bp
    • E Value
      0E0
    • BLAST Score
      1,231 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AF095689
      0.36% cov
    • Alignment Length
      675 bp
    • CIGAR string
      51MN14MN209MN398M mismatches: 3 - insertions: 0 - deletions: 0
  • Vaccinia virus GLV-1h68

    Vaccinia virus GLV-1h68

    • Public DB hit
      GI:167412463
      EU410304
    • Hit length
      203,057 bp
    • E Value
      0E0
    • BLAST Score
      1,225.4 bits
    • Similarity
      99.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU410304
      0.33% cov
    • Alignment Length
      675 bp
    • CIGAR string
      334MN288MN20MN23MN6M mismatches: 4 - insertions: 0 - deletions: 0
  • Vaccinia virus

    Vaccinia virus

    • Public DB hit
      GI:119352440
      DQ121394
      1 of 9 hits reported for Vaccinia virus.
    • Hit length
      189,421 bp
    • E Value
      0E0
    • BLAST Score
      1,225.4 bits
    • Similarity
      99.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      DQ121394
      0.36% cov
    • Alignment Length
      675 bp
  • Vaccinia virus Ankara

    Vaccinia virus Ankara

    • Public DB hit
      GI:160857876
      AM501482
    • Hit length
      192,353 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      98.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AM501482
      0.35% cov
    • Alignment Length
      675 bp
  • Rabbitpox virus

    Rabbitpox virus

    • Public DB hit
      GI:44971363
      AY484669
    • Hit length
      197,731 bp
    • E Value
      0E0
    • BLAST Score
      1,197.7 bits
    • Similarity
      98.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY484669
      0.34% cov
    • Alignment Length
      675 bp
  • Vaccinia virus WR

    Vaccinia virus WR

    • Public DB hit
      GI:29692106
      AY243312
    • Hit length
      194,711 bp
    • E Value
      0E0
    • BLAST Score
      1,192.2 bits
    • Similarity
      98.95%
    • Coverage
      98.81%
    • Alignment (schematic)

      SEQ ID NO 6
      98.81% cov
      AY243312
      0.34% cov
    • Alignment Length
      667 bp
  • Cowpox virus

    Cowpox virus

    • Public DB hit
      GI:30519405
      X94355
      1 of 3 hits reported for Cowpox virus.
    • Hit length
      223,666 bp
    • E Value
      0E0
    • BLAST Score
      1,164.5 bits
    • Similarity
      98.07%
    • Coverage
      98.81%
    • Alignment (schematic)

      SEQ ID NO 6
      98.81% cov
      X94355
      0.3% cov
    • Alignment Length
      673 bp
  • Horsepox virus

    Horsepox virus

    • Public DB hit
      GI:111184167
      DQ792504
    • Hit length
      212,633 bp
    • E Value
      0E0
    • BLAST Score
      1,155.3 bits
    • Similarity
      97.63%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      DQ792504
      0.32% cov
    • Alignment Length
      675 bp
  • Variola virus

    Variola virus

    • Public DB hit
      GI:109724445
      DQ437582
      1 of 6 hits reported for Variola virus.
    • Hit length
      186,668 bp
    • E Value
      0E0
    • BLAST Score
      1,101.7 bits
    • Similarity
      96.17%
    • Coverage
      99.26%
    • Alignment (schematic)

      SEQ ID NO 6
      99.26% cov
      DQ437582
      0.36% cov
    • Alignment Length
      678 bp
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
512
Type
peptide
Locations
Claims, Detailed Description

Declared organism:
Human immunodeficiency virus

Occurrence
19 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
1,539
Type
nucleotide
Locations
Detailed Description

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Vaccinia virus Copenhagen

    Vaccinia virus Copenhagen

    • Public DB hit
      GI:335317
      M35027
    • Hit length
      191,737 bp
    • E Value
      0E0
    • BLAST Score
      2,843.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      M35027
      0.8% cov
    • Alignment Length
      1,539 bp
    • CIGAR string
      1539M mismatches: 0 - insertions: 0 - deletions: 0
  • Vaccinia virus

    Vaccinia virus

    • Public DB hit
      GI:56713624
      AY678276
      1 of 9 hits reported for Vaccinia virus.
    • Hit length
      189,122 bp
    • E Value
      0E0
    • BLAST Score
      2,837.6 bits
    • Similarity
      99.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY678276
      0.81% cov
    • Alignment Length
      1,539 bp
    • CIGAR string
      713MN825M mismatches: 1 - insertions: 0 - deletions: 0
  • Vaccinia virus GLV-1h68

    Vaccinia virus GLV-1h68

    • Public DB hit
      GI:167412463
      EU410304
    • Hit length
      203,057 bp
    • E Value
      0E0
    • BLAST Score
      2,809.9 bits
    • Similarity
      99.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EU410304
      0.76% cov
    • Alignment Length
      1,539 bp
  • Rabbitpox virus

    Rabbitpox virus

    • Public DB hit
      GI:44971363
      AY484669
    • Hit length
      197,731 bp
    • E Value
      0E0
    • BLAST Score
      2,804.3 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY484669
      0.78% cov
    • Alignment Length
      1,539 bp
  • Vaccinia virus WR

    Vaccinia virus WR

    • Public DB hit
      GI:29692106
      AY243312
    • Hit length
      194,711 bp
    • E Value
      0E0
    • BLAST Score
      2,804.3 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY243312
      0.79% cov
    • Alignment Length
      1,539 bp
  • Vaccinia virus Tian Tan

    Vaccinia virus Tian Tan

    • Public DB hit
      GI:6969640
      AF095689
    • Hit length
      189,274 bp
    • E Value
      0E0
    • BLAST Score
      2,804.3 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF095689
      0.81% cov
    • Alignment Length
      1,540 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:62288491
      AY965324
    • Hit length
      1,617 bp
    • E Value
      0E0
    • BLAST Score
      2,802.5 bits
    • Similarity
      99.54%
    • Coverage
      99.94%
    • Alignment (schematic)

      SEQ ID NO 8
      99.94% cov
      AY965324
      95.11% cov
    • Alignment Length
      1,538 bp
  • Cowpox virus

    Cowpox virus

    • Public DB hit
      GI:30519405
      X94355
      1 of 3 hits reported for Cowpox virus.
    • Hit length
      223,666 bp
    • E Value
      0E0
    • BLAST Score
      2,776.6 bits
    • Similarity
      99.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      X94355
      0.69% cov
    • Alignment Length
      1,539 bp
  • Horsepox virus

    Horsepox virus

    • Public DB hit
      GI:111184167
      DQ792504
    • Hit length
      212,633 bp
    • E Value
      0E0
    • BLAST Score
      2,682.5 bits
    • Similarity
      98.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ792504
      0.72% cov
    • Alignment Length
      1,540 bp
  • Ectromelia virus

    Ectromelia virus

    • Public DB hit
      GI:22123748
      AF012825
    • Hit length
      209,771 bp
    • E Value
      0E0
    • BLAST Score
      2,649.2 bits
    • Similarity
      97.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF012825
      0.73% cov
    • Alignment Length
      1,539 bp
  • Camelpox virus M-96

    Camelpox virus M-96

    • Public DB hit
      GI:18482913
      AF438165
    • Hit length
      205,719 bp
    • E Value
      0E0
    • BLAST Score
      2,643.7 bits
    • Similarity
      97.66%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF438165
      0.75% cov
    • Alignment Length
      1,539 bp
  • Camelpox virus CMS

    Camelpox virus CMS

    • Public DB hit
      GI:19717929
      AY009089
    • Hit length
      202,205 bp
    • E Value
      0E0
    • BLAST Score
      2,643.7 bits
    • Similarity
      97.66%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY009089
      0.76% cov
    • Alignment Length
      1,539 bp
  • Monkeypox virus

    Monkeypox virus

    • Public DB hit
      GI:68448876
      DQ011154
      1 of 2 hits reported for Monkeypox virus.
    • Hit length
      197,195 bp
    • E Value
      0E0
    • BLAST Score
      2,525.5 bits
    • Similarity
      97.32%
    • Coverage
      96.75%
    • Alignment (schematic)

      SEQ ID NO 8
      96.75% cov
      DQ011154
      0.75% cov
    • Alignment Length
      1,490 bp
  • Monkeypox virus Zaire-96-I-16

    Monkeypox virus Zaire-96-I-16

    • Public DB hit
      GI:17529780
      AF380138
    • Hit length
      196,858 bp
    • E Value
      0E0
    • BLAST Score
      2,525.5 bits
    • Similarity
      97.32%
    • Coverage
      96.75%
    • Alignment (schematic)

      SEQ ID NO 8
      96.75% cov
      AF380138
      0.75% cov
    • Alignment Length
      1,490 bp
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
263
Type
peptide
Locations
Claims, Detailed Description

Declared organism:
Human immunodeficiency virus

Determined organism:
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:62288494
      AAX78502
    • Hit length
      289 aa
    • E Value
      7.57E-151
    • BLAST Score
      537.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAX78502
      91% cov
    • Alignment Length
      263 aa
    • CIGAR string
      263M mismatches: 0 - insertions: 0 - deletions: 0
  • Vaccinia virus

    Vaccinia virus

    • Public DB hit
      GI:66275822
      YP_232907
      1 of 7 hits reported for Vaccinia virus.
    • Hit length
      263 aa
    • E Value
      4.37E-150
    • BLAST Score
      535.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_232907
      100% cov
    • Alignment Length
      263 aa
    • CIGAR string
      263M mismatches: 0 - insertions: 0 - deletions: 0
  • Ectromelia virus

    Ectromelia virus

    • Public DB hit
      GI:32328778
      CAE00483
    • Hit length
      263 aa
    • E Value
      6.47E-149
    • BLAST Score
      531.6 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CAE00483
      100% cov
    • Alignment Length
      263 aa
  • Vaccinia virus GLV-1h68

    Vaccinia virus GLV-1h68

    • Public DB hit
      GI:167412495
      ABZ79929
    • Hit length
      263 aa
    • E Value
      1.25E-148
    • BLAST Score
      530.4 bits
    • Similarity
      99.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ABZ79929
      100% cov
    • Alignment Length
      263 aa
  • Rabbitpox virus

    Rabbitpox virus

    • Public DB hit
      GI:44971380
      AAS49730
    • Hit length
      263 aa
    • E Value
      1.36E-148
    • BLAST Score
      530.4 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAS49730
      100% cov
    • Alignment Length
      263 aa
  • Cowpox virus

    Cowpox virus

    • Public DB hit
      GI:90660265
      ABD97379
      1 of 3 hits reported for Cowpox virus.
    • Hit length
      263 aa
    • E Value
      1.12E-147
    • BLAST Score
      527.3 bits
    • Similarity
      98.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ABD97379
      100% cov
    • Alignment Length
      263 aa
  • Variola virus

    Variola virus

    • Public DB hit
      GI:885701
      AAA69317
      1 of 4 hits reported for Variola virus.
    • Hit length
      263 aa
    • E Value
      1.44E-142
    • BLAST Score
      510.4 bits
    • Similarity
      96.96%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAA69317
      100% cov
    • Alignment Length
      263 aa
  • Camelpox virus

    Camelpox virus

    • Public DB hit
      GI:18640257
      NP_570413
    • Hit length
      265 aa
    • E Value
      4.46E-139
    • BLAST Score
      498.8 bits
    • Similarity
      97.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_570413
      100% cov
    • Alignment Length
      265 aa
  • Horsepox virus

    Horsepox virus

    • Public DB hit
      GI:111184209
      ABH08129
    • Hit length
      263 aa
    • E Value
      2.03E-138
    • BLAST Score
      496.5 bits
    • Similarity
      97.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ABH08129
      100% cov
    • Alignment Length
      263 aa
  • Variola major virus

    Variola major virus

    • Public DB hit
      GI:438930
      AAA60760
    • Hit length
      263 aa
    • E Value
      5.58E-138
    • BLAST Score
      495 bits
    • Similarity
      97.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAA60760
      100% cov
    • Alignment Length
      263 aa
Occurrence
42 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
792
Type
nucleotide
Locations
Detailed Description

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Vaccinia virus

    Vaccinia virus

    • Public DB hit
      GI:56713624
      AY678276
      1 of 10 hits reported for Vaccinia virus.
    • Hit length
      189,122 bp
    • E Value
      0E0
    • BLAST Score
      1,463.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY678276
      0.42% cov
    • Alignment Length
      792 bp
    • CIGAR string
      792M mismatches: 0 - insertions: 0 - deletions: 0
  • Vaccinia virus Tian Tan

    Vaccinia virus Tian Tan

    • Public DB hit
      GI:6969640
      AF095689
    • Hit length
      189,274 bp
    • E Value
      0E0
    • BLAST Score
      1,463.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AF095689
      0.42% cov
    • Alignment Length
      792 bp
    • CIGAR string
      792M mismatches: 0 - insertions: 0 - deletions: 0
  • Vaccinia virus Copenhagen

    Vaccinia virus Copenhagen

    • Public DB hit
      GI:335317
      M35027
    • Hit length
      191,737 bp
    • E Value
      0E0
    • BLAST Score
      1,463.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      M35027
      0.41% cov
    • Alignment Length
      792 bp
    • CIGAR string
      792M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:62288493
      AY965325
    • Hit length
      870 bp
    • E Value
      0E0
    • BLAST Score
      1,458.1 bits
    • Similarity
      99.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY965325
      91.03% cov
    • Alignment Length
      792 bp
  • Vaccinia virus WR

    Vaccinia virus WR

    • Public DB hit
      GI:29692106
      AY243312
    • Hit length
      194,711 bp
    • E Value
      0E0
    • BLAST Score
      1,458.1 bits
    • Similarity
      99.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY243312
      0.41% cov
    • Alignment Length
      792 bp
  • Vaccinia virus Ankara

    Vaccinia virus Ankara

    • Public DB hit
      GI:160857876
      AM501482
    • Hit length
      192,353 bp
    • E Value
      0E0
    • BLAST Score
      1,452.6 bits
    • Similarity
      99.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AM501482
      0.41% cov
    • Alignment Length
      792 bp
  • Vaccinia virus GLV-1h68

    Vaccinia virus GLV-1h68

    • Public DB hit
      GI:167412463
      EU410304
    • Hit length
      203,057 bp
    • E Value
      0E0
    • BLAST Score
      1,447 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU410304
      0.39% cov
    • Alignment Length
      792 bp
  • Ectromelia virus

    Ectromelia virus

    • Public DB hit
      GI:32328777
      AJ574811
    • Hit length
      841 bp
    • E Value
      0E0
    • BLAST Score
      1,447 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AJ574811
      94.17% cov
    • Alignment Length
      792 bp
  • Rabbitpox virus

    Rabbitpox virus

    • Public DB hit
      GI:44971363
      AY484669
    • Hit length
      197,731 bp
    • E Value
      0E0
    • BLAST Score
      1,436 bits
    • Similarity
      99.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY484669
      0.4% cov
    • Alignment Length
      792 bp
  • Cowpox virus

    Cowpox virus

    • Public DB hit
      GI:90660233
      DQ437593
    • Hit length
      228,250 bp
    • E Value
      0E0
    • BLAST Score
      1,402.7 bits
    • Similarity
      98.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ437593
      0.35% cov
    • Alignment Length
      792 bp
  • Horsepox virus

    Horsepox virus

    • Public DB hit
      GI:111184167
      DQ792504
    • Hit length
      212,633 bp
    • E Value
      0E0
    • BLAST Score
      1,369.5 bits
    • Similarity
      97.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ792504
      0.37% cov
    • Alignment Length
      792 bp
  • Camelpox virus M-96

    Camelpox virus M-96

    • Public DB hit
      GI:18482913
      AF438165
    • Hit length
      205,719 bp
    • E Value
      0E0
    • BLAST Score
      1,363.9 bits
    • Similarity
      97.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AF438165
      0.39% cov
    • Alignment Length
      798 bp
  • Camelpox virus CMS

    Camelpox virus CMS

    • Public DB hit
      GI:19717929
      AY009089
    • Hit length
      202,205 bp
    • E Value
      0E0
    • BLAST Score
      1,363.9 bits
    • Similarity
      97.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY009089
      0.39% cov
    • Alignment Length
      798 bp
  • Variola virus

    Variola virus

    • Public DB hit
      GI:109724445
      DQ437582
      1 of 3 hits reported for Variola virus.
    • Hit length
      186,668 bp
    • E Value
      0E0
    • BLAST Score
      1,330.7 bits
    • Similarity
      96.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ437582
      0.42% cov
    • Alignment Length
      793 bp
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder

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