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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
58 sequences found in this patent (in total)

Displaying 1 - 10 of 58 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,404
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
unidentified influenza virus

Determined organism:
  • Influenza A virus (A/Hong Kong/1073/99(H9N2))

    Influenza A virus (A/Hong Kong/1073/99(H9N2))

    • Public DB hit
      GI:8894699
      AJ404629
    • Hit length
      1,418 bp
    • E Value
      0E0
    • BLAST Score
      2,588.3 bits
    • Similarity
      99.93%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AJ404629
      99.01% cov
    • Alignment Length
      1,404 bp
    • CIGAR string
      1370MN33M mismatches: 1 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Hong Kong/1074/99(H9N2))

    Influenza A virus (A/Hong Kong/1074/99(H9N2))

    • Public DB hit
      GI:8894697
      AJ404628
    • Hit length
      1,418 bp
    • E Value
      0E0
    • BLAST Score
      2,538.4 bits
    • Similarity
      99.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AJ404628
      99.01% cov
    • Alignment Length
      1,404 bp
    • CIGAR string
      113MN5MN24MN232MN176MN128MN105MN22MN200MN356MN33M mismatches: 10 - insertions: 0 - deletions: 0
  • Influenza A virus (A/pheasant/Hong Kong/SSP11/99(H9N2))

    Influenza A virus (A/pheasant/Hong Kong/SSP11/99(H9N2))

    • Public DB hit
      GI:12060699
      AF222656
    • Hit length
      1,412 bp
    • E Value
      0E0
    • BLAST Score
      2,521.8 bits
    • Similarity
      99.28%
    • Coverage
      99.36%
    • Alignment (schematic)

      SEQ ID NO 1
      99.36% cov
      AF222656
      98.8% cov
    • Alignment Length
      1,395 bp
    • CIGAR string
      113MN5MN24MN268MN140MN234MN226MN47MN305MN11MN12M9H mismatches: 10 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Quail/Hong Kong/A17/99(H9N2))

    Influenza A virus (A/Quail/Hong Kong/A17/99(H9N2))

    • Public DB hit
      GI:12060691
      AF222652
    • Hit length
      1,412 bp
    • E Value
      0E0
    • BLAST Score
      2,521.8 bits
    • Similarity
      99.28%
    • Coverage
      99.36%
    • Alignment (schematic)

      SEQ ID NO 1
      99.36% cov
      AF222652
      98.8% cov
    • Alignment Length
      1,395 bp
    • CIGAR string
      113MN5MN24MN268MN140MN234MN226MN47MN305MN11MN12M9H mismatches: 10 - insertions: 0 - deletions: 0
  • Influenza A virus (A/ferret/Maryland/P10-UMD/2008(H9N2))

    Influenza A virus (A/ferret/Maryland/P10-UMD/2008(H9N2))

    • Public DB hit
      GI:215480638
      CY036279
    • Hit length
      1,460 bp
    • E Value
      0E0
    • BLAST Score
      2,516.3 bits
    • Similarity
      99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CY036279
      96.16% cov
    • Alignment Length
      1,404 bp
    • CIGAR string
      66MN14MN31MN5MN24MN34MN197MN55MN48MN71MN234MN22MN200MN356MN33M mismatches: 14 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Quail/Hong Kong/SSP10/99(H9N2))

    Influenza A virus (A/Quail/Hong Kong/SSP10/99(H9N2))

    • Public DB hit
      GI:12060697
      AF222655
    • Hit length
      1,412 bp
    • E Value
      0E0
    • BLAST Score
      2,516.3 bits
    • Similarity
      99.21%
    • Coverage
      99.36%
    • Alignment (schematic)

      SEQ ID NO 1
      99.36% cov
      AF222655
      98.8% cov
    • Alignment Length
      1,395 bp
    • CIGAR string
      113MN5MN24MN199MN68MN140MN234MN226MN47MN305MN11MN12M9H mismatches: 11 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Chicken/Hong Kong/NT16/99(H9N2))

    Influenza A virus (A/Chicken/Hong Kong/NT16/99(H9N2))

    • Public DB hit
      GI:12060695
      AF222654
    • Hit length
      1,412 bp
    • E Value
      0E0
    • BLAST Score
      2,516.3 bits
    • Similarity
      99.21%
    • Coverage
      99.36%
    • Alignment (schematic)

      SEQ ID NO 1
      99.36% cov
      AF222654
      98.8% cov
    • Alignment Length
      1,395 bp
    • CIGAR string
      113MN5MN24MN199MN68MN140MN234MN226MN47MN305MN11MN12M9H mismatches: 11 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Pigeon/Hong Kong/FY6/99(H9N2))

    Influenza A virus (A/Pigeon/Hong Kong/FY6/99(H9N2))

    • Public DB hit
      GI:12060693
      AF222653
    • Hit length
      1,412 bp
    • E Value
      0E0
    • BLAST Score
      2,516.3 bits
    • Similarity
      99.21%
    • Coverage
      99.36%
    • Alignment (schematic)

      SEQ ID NO 1
      99.36% cov
      AF222653
      98.8% cov
    • Alignment Length
      1,395 bp
    • CIGAR string
      113MN5MN24MN268MN140MN234MN226MN47MN303MNMN11MN12M9H mismatches: 11 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Hong Kong/1074/1997(H9N2))

    Influenza A virus (A/Hong Kong/1074/1997(H9N2))

    • Public DB hit
      GI:269820393
      GU053180
    • Hit length
      1,435 bp
    • E Value
      0E0
    • BLAST Score
      2,483 bits
    • Similarity
      98.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      GU053180
      97.84% cov
    • Alignment Length
      1,404 bp
    • CIGAR string
      113MN5MN24MN232MN176MN128MN105MN22MN216MN76M2NMN23MN11MN89MN4MN87MN20MN20MN5MN27M mismatches: 20 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Quail/Hong Kong/G1/97 (H9N2))

    Influenza A virus (A/Quail/Hong Kong/G1/97 (H9N2))

    • Public DB hit
      GI:5732260
      AF156396
    • Hit length
      1,387 bp
    • E Value
      0E0
    • BLAST Score
      2,479.3 bits
    • Similarity
      98.92%
    • Coverage
      98.79%
    • Alignment (schematic)

      SEQ ID NO 1
      98.79% cov
      AF156396
      100% cov
    • Alignment Length
      1,387 bp
    • CIGAR string
      38MN74MN5MN319MN114MN234MN355MN52MNMN4MN4MN17MN11MN129MN5MN10M17H mismatches: 15 - insertions: 0 - deletions: 0
  • Influenza A virus (A/parakeet/Chiba/1/97(H9N2))

    Influenza A virus (A/parakeet/Chiba/1/97(H9N2))

    • Public DB hit
      GI:13383286
      AB049163
    • Hit length
      1,410 bp
    • E Value
      0E0
    • BLAST Score
      2,433.2 bits
    • Similarity
      97.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB049163
      100% cov
    • Alignment Length
      1,411 bp
    • CIGAR string
      42MN67M4IM2I2MN5MN8MN197MN32MN12MN66MN9MN104MN98MD2MI95MN37MN137MN7MN171MNMN35MN89MN4MN60MN68MN5MN27M mismatches: 22 - insertions: 7 - deletions: 1
  • Influenza A virus (A/silky chicken/Hong Kong/AP46/2001(H6N2))

    Influenza A virus (A/silky chicken/Hong Kong/AP46/2001(H6N2))

    • Public DB hit
      GI:307077503
      AB586821
    • Hit length
      1,421 bp
    • E Value
      0E0
    • BLAST Score
      2,427.6 bits
    • Similarity
      97.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB586821
      98.8% cov
    • Alignment Length
      1,404 bp
    • CIGAR string
      81MN31MN5MN24MN28MN5MN28MN18MN77MN56MN14MN26MN70MN48MN29MN76MN3MN143MN9MN22MN112MN38MN21MN26MN239MN15MN13MN31MN39MN14MN33M mismatches: 30 - insertions: 0 - deletions: 0
  • Influenza A virus (A/chicken/Saudi Arabia/CP7/1998(H9N2))

    Influenza A virus (A/chicken/Saudi Arabia/CP7/1998(H9N2))

    • Public DB hit
      GI:322518269
      CY081266
    • Hit length
      1,410 bp
    • E Value
      0E0
    • BLAST Score
      2,422.1 bits
    • Similarity
      97.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CY081266
      100% cov
    • Alignment Length
      1,411 bp
    • CIGAR string
      42MN67M4IM2I2MN5MN8MN63MN30MN102MN32MN79MN9MN104MN98MD2MI95MN37MN137MN7MN171MNMN35MN55MN33MN4MN60MN68MN5MN27M mismatches: 24 - insertions: 7 - deletions: 1
  • Influenza A virus (A/chicken/Iran/16/2000(H9N2))

    Influenza A virus (A/chicken/Iran/16/2000(H9N2))

    • Public DB hit
      GI:209360628
      FJ357840
    • Hit length
      1,446 bp
    • E Value
      0E0
    • BLAST Score
      2,394.4 bits
    • Similarity
      97.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FJ357840
      97.51% cov
    • Alignment Length
      1,411 bp
    • CIGAR string
      24MN17MN67M4IM2I2MN5MN8MN63MN30MN60MN23MN9M2N6MN32MN79MN9MN104MN98MD2MI95MN37MN137MN7MN83MN87MNMN35MN55MN33MN4MN60MN68MN5MN27M mismatches: 30 - insertions: 7 - deletions: 1
  • Influenza A virus (A/chicken/Iran/ZMT-101/1998(H9N2))

    Influenza A virus (A/chicken/Iran/ZMT-101/1998(H9N2))

    • Public DB hit
      GI:117276915
      EF044307
    • Hit length
      1,447 bp
    • E Value
      0E0
    • BLAST Score
      2,394.4 bits
    • Similarity
      97.38%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EF044307
      97.44% cov
    • Alignment Length
      1,411 bp
    • CIGAR string
      42MN67M4IM2I2MN5MN8MN63MN30MN42MN59MN32MN79MN9MN104MN98MD2MI95MN37MN79MN57MN7MN6MN140MN10MN12MNMN35MN55MN33MN4MN60MN68MN5MN27M mismatches: 29 - insertions: 7 - deletions: 1
  • Influenza A virus (A/chicken/Iran/11T/99(H9N2))

    Influenza A virus (A/chicken/Iran/11T/99(H9N2))

    • Public DB hit
      GI:33317988
      AF508579
    • Hit length
      1,410 bp
    • E Value
      0E0
    • BLAST Score
      2,383.3 bits
    • Similarity
      97.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF508579
      100% cov
    • Alignment Length
      1,411 bp
    • CIGAR string
      42MN67M4IM2I2MN5MN8MN63MN30MN102MN32MN79MN9MN104MN77MN20MD2MI95MN37MN79MN29MN27MN7MN6MN140MN10MN12MNMN35MN55MN33MN4MN60MN68MN5MN18MN8M mismatches: 31 - insertions: 7 - deletions: 1
  • Influenza A virus (A/parakeet/Narita/92A/98(H9N2))

    Influenza A virus (A/parakeet/Narita/92A/98(H9N2))

    • Public DB hit
      GI:13383288
      AB049164
    • Hit length
      1,410 bp
    • E Value
      0E0
    • BLAST Score
      2,383.3 bits
    • Similarity
      97.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB049164
      100% cov
    • Alignment Length
      1,411 bp
    • CIGAR string
      42MN67M4IM2I2MN5MNMN6MN44MN18MN30MN8MN93MN32MN12MN66MN9MN104MN98MD2MI95MN37MN137MN7MN47MN123MNMN35MN44MN10MN21MN11MN4MN60MN68MN5MN27M mismatches: 31 - insertions: 7 - deletions: 1
  • Influenza A virus (A/chicken/Iran/661/1998(H9N2))

    Influenza A virus (A/chicken/Iran/661/1998(H9N2))

    • Public DB hit
      GI:295916486
      HM165464
    • Hit length
      1,419 bp
    • E Value
      0E0
    • BLAST Score
      2,377.8 bits
    • Similarity
      97.17%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      HM165464
      99.37% cov
    • Alignment Length
      1,411 bp
    • CIGAR string
      42MN67M4IM2I2MN5MN72MN30MN12MN89MN32MN65MN13MN9MN20MN83MN98MD2MI69MN25MN37MN79MN57MN7MN6MN140MN10MN12MNMN35MN3MN51MN33MN4MN60MN68MN5MN27M mismatches: 32 - insertions: 7 - deletions: 1
  • Influenza A virus (A/chicken/Pakistan/4/99(H9N2))

    Influenza A virus (A/chicken/Pakistan/4/99(H9N2))

    • Public DB hit
      GI:33317982
      AF508576
    • Hit length
      1,410 bp
    • E Value
      0E0
    • BLAST Score
      2,361.1 bits
    • Similarity
      96.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF508576
      100% cov
    • Alignment Length
      1,412 bp
    • CIGAR string
      42MN3MN63M4IM2I2MN5MN8MN2MN70MN27MN95MN32MN12MN28MN37MN9MN25MN78MN98MD2MI95MN21MN15MN49MN26MN32MIMD26MN7MN110MN60MNMN35MNMN87MN4MN60MN68MN24MN8M mismatches: 33 - insertions: 8 - deletions: 2
  • Influenza A virus (A/chicken/Saudi Arabia/532/99(H9N2))

    Influenza A virus (A/chicken/Saudi Arabia/532/99(H9N2))

    • Public DB hit
      GI:33317990
      AF508580
    • Hit length
      1,410 bp
    • E Value
      0E0
    • BLAST Score
      2,344.5 bits
    • Similarity
      96.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF508580
      100% cov
    • Alignment Length
      1,411 bp
    • CIGAR string
      42MN4MN5MN56M4IM2I2MN5MN8MN36MN51MN5MN81MN20MN32MN12MN4MN61MN9MN104MN98MN97MN37MN109MN4MN7MN13M2N7MN8MN161MDMIMN35MN55MN33MN4MN60MN20MN41MN5MN5MN18MN8M mismatches: 38 - insertions: 7 - deletions: 1
  • Influenza A virus (A/chicken/Iran/430/98(H9N2))

    Influenza A virus (A/chicken/Iran/430/98(H9N2))

    • Public DB hit
      GI:55585484
      AY785752
    • Hit length
      1,406 bp
    • E Value
      0E0
    • BLAST Score
      2,337.1 bits
    • Similarity
      97.12%
    • Coverage
      98.43%
    • Alignment (schematic)

      SEQ ID NO 1
      98.43% cov
      AY785752
      98.72% cov
    • Alignment Length
      1,389 bp
    • CIGAR string
      42MN67M4IM2I2MN5MN8MN63MN30MN12MN89MN32MN65MN13MN9MN20MN83MN98MD2MI69MN25MN37MN79MN57MN7MN6MN140MN10MN12MNMN35MN55MN33MN4MN60MN68MN5MN5M22H mismatches: 32 - insertions: 7 - deletions: 1
  • Influenza A virus (A/chicken/Pakistan/2/1999(H9N2))

    Influenza A virus (A/chicken/Pakistan/2/1999(H9N2))

    • Public DB hit
      GI:12038889
      AJ291393
    • Hit length
      1,415 bp
    • E Value
      0E0
    • BLAST Score
      2,333.4 bits
    • Similarity
      96.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AJ291393
      99.65% cov
    • Alignment Length
      1,412 bp
    • CIGAR string
      42MN67M4IM2I2MN5MN8MN13MN12MN46M2N4MN21MN4MN90MN32MN12MN40MN25MN9MN25MN73MD2MN2MI53MN44MD2MI95MN37MN49MN5MN53MN27MN7MN171MNMN10MN24MNMN15MN71MN4MN60MN35MN32MN33M mismatches: 38 - insertions: 8 - deletions: 2
  • Influenza A virus (A/chicken/Pakistan/5/99(H9N2))

    Influenza A virus (A/chicken/Pakistan/5/99(H9N2))

    • Public DB hit
      GI:33317984
      AF508577
    • Hit length
      1,410 bp
    • E Value
      0E0
    • BLAST Score
      2,322.4 bits
    • Similarity
      96.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF508577
      100% cov
    • Alignment Length
      1,412 bp
    • CIGAR string
      42MN67M4IM2I2MN5MN8MN13MN12MN46M2N4MN21MN4MN90MN32MN12MN40MN25MN9MN25MN73MD2MN2MI53MN44MD2MI95MN37MN49MN5MN53MN27MN7MN171MNMN10MN24MNMN15MN71MN4MN60MN35MN32MN8MN15MN8M mismatches: 40 - insertions: 8 - deletions: 2
  • Influenza A virus (A/chicken/Iran/496/99(H9N2))

    Influenza A virus (A/chicken/Iran/496/99(H9N2))

    • Public DB hit
      GI:55585486
      AY785753
    • Hit length
      1,406 bp
    • E Value
      0E0
    • BLAST Score
      2,320.5 bits
    • Similarity
      96.9%
    • Coverage
      98.43%
    • Alignment (schematic)

      SEQ ID NO 1
      98.43% cov
      AY785753
      98.72% cov
    • Alignment Length
      1,389 bp
    • CIGAR string
      42MN59MN7M4IM2I2MN5MN8MN40MN22MN30MN102MN32MN65MN13MN9MN104MN77MN20MD2MI133MN79MN42MN14MN7MN40MN106MN10MN12MNMN16MN18MN22MN32MN33MN4MN60MN34MN33MN5MN5M22H mismatches: 35 - insertions: 7 - deletions: 1
  • Influenza A virus (A/chicken/Iran/584/2000(H9N2))

    Influenza A virus (A/chicken/Iran/584/2000(H9N2))

    • Public DB hit
      GI:295916490
      HM165466
    • Hit length
      1,417 bp
    • E Value
      0E0
    • BLAST Score
      2,311.3 bits
    • Similarity
      96.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      HM165466
      99.51% cov
    • Alignment Length
      1,413 bp
    • CIGAR string
      42MN2MN56MN7M4IM2I2MN5MN8MN2MN37MN22MN30MN102MN32MN8MN70MN9MN104MN77MN20MD2MI133MN37MN41MN42MN14MN7MN6MN85MI5MD18MN11MN17MIMD10MN12MNMN16MN18MN55MN33MN4MN4MN52MN2MN68MN5MN2MN24M mismatches: 40 - insertions: 9 - deletions: 3
Occurrence
60 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
1,683
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
unidentified influenza virus

Determined organism:
  • Influenza A virus (A/Hong Kong/1073/99(H9N2))

    Influenza A virus (A/Hong Kong/1073/99(H9N2))

    • Public DB hit
      GI:8894693
      AJ404626
    • Hit length
      1,714 bp
    • E Value
      0E0
    • BLAST Score
      3,109 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AJ404626
      98.19% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      1683M mismatches: 0 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Hong Kong/1074/1997(H9N2))

    Influenza A virus (A/Hong Kong/1074/1997(H9N2))

    • Public DB hit
      GI:269826344
      GU053179
    • Hit length
      1,716 bp
    • E Value
      0E0
    • BLAST Score
      3,059.2 bits
    • Similarity
      99.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU053179
      98.08% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      164MN23MN42MN36MN324MN165MN86MN481MN231MN122M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Hong Kong/1074/99(H9N2))

    Influenza A virus (A/Hong Kong/1074/99(H9N2))

    • Public DB hit
      GI:8894695
      AJ404627
    • Hit length
      1,714 bp
    • E Value
      0E0
    • BLAST Score
      3,059.2 bits
    • Similarity
      99.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AJ404627
      98.19% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      164MN23MN42MN36MN324MN165MN86MN481MN231MN122M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/guinea fowl/Hong Kong/WF10/99(H9N2))

    Influenza A virus (A/guinea fowl/Hong Kong/WF10/99(H9N2))

    • Public DB hit
      GI:28779182
      AY206676
    • Hit length
      1,683 bp
    • E Value
      0E0
    • BLAST Score
      3,014.9 bits
    • Similarity
      98.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY206676
      100% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      131MN17MN14MN23MN77MNMN204MN119MN165MN19MN66MN6MN117MN356MN29MN161MN134MN27M mismatches: 17 - insertions: 0 - deletions: 0
  • Influenza A virus (A/ferret/Maryland/P10-UMD/2008(H9N2))

    Influenza A virus (A/ferret/Maryland/P10-UMD/2008(H9N2))

    • Public DB hit
      GI:215480634
      CY036277
    • Hit length
      1,741 bp
    • E Value
      0E0
    • BLAST Score
      3,003.8 bits
    • Similarity
      98.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CY036277
      96.67% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      131MN17MN14MN23MN77MNMN204MN114MN4MN165MN19MN66MN6MN117MN356MN152MN38MN36MN97MN27M mismatches: 19 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Quail/Hong Kong/G1/97 (H9N2))

    Influenza A virus (A/Quail/Hong Kong/G1/97 (H9N2))

    • Public DB hit
      GI:6006995
      AF156378
    • Hit length
      1,629 bp
    • E Value
      0E0
    • BLAST Score
      2,898.5 bits
    • Similarity
      98.77%
    • Coverage
      96.79%
    • Alignment (schematic)

      SEQ ID NO 2
      96.79% cov
      AF156378
      100% cov
    • Alignment Length
      1,629 bp
    • CIGAR string
      14MN110MN38MN23MN69MN9MN146MN23MN153MN103MN48MN12MN86MN10MN104MN164MN200MN68MN5MN137MN87M54H mismatches: 20 - insertions: 0 - deletions: 0
  • Influenza A virus (A/parakeet/Chiba/1/97(H9N2))

    Influenza A virus (A/parakeet/Chiba/1/97(H9N2))

    • Public DB hit
      GI:13383278
      AB049159
    • Hit length
      1,683 bp
    • E Value
      0E0
    • BLAST Score
      2,898.5 bits
    • Similarity
      97.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AB049159
      100% cov
    • Alignment Length
      1,684 bp
    • CIGAR string
      18MN145MN22M2N45MN58MN121MN29MN54MN35MN38MN9MN4MN2MN2MN19MN33MN31MN31MN31MN12MN85MIMD10MN95MN8MN21MN88MN254MN20MN53MN47MN49MN33MN5MN32MN57MN31MN18M mismatches: 36 - insertions: 1 - deletions: 1
  • Influenza A virus (A/parakeet/Narita/92A/98(H9N2))

    Influenza A virus (A/parakeet/Narita/92A/98(H9N2))

    • Public DB hit
      GI:13383280
      AB049160
    • Hit length
      1,683 bp
    • E Value
      0E0
    • BLAST Score
      2,865.3 bits
    • Similarity
      97.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AB049160
      100% cov
    • Alignment Length
      1,685 bp
    • CIGAR string
      164MN22M2N44MDMI180MN29MN54MNMN33MN38MN9MNMN2MN2MN2MN4MN14MN33MN7MN10MN29MN14MN31MN12MN85MI2MD9MN95MN8MN110MN167MN86MN20MN53MN47MN49MN33MN5MN14MN17MN57MN22MN8MN18M mismatches: 40 - insertions: 2 - deletions: 2
  • Influenza A virus (A/chicken/Iran/SS1/1998(H9N2))

    Influenza A virus (A/chicken/Iran/SS1/1998(H9N2))

    • Public DB hit
      GI:224578770
      FJ794817
    • Hit length
      1,741 bp
    • E Value
      0E0
    • BLAST Score
      2,809.9 bits
    • Similarity
      96.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FJ794817
      96.67% cov
    • Alignment Length
      1,685 bp
    • CIGAR string
      9MN154MN22M2N12MN13MN8MN8MDMI7MN14MN101MN55MN29MN11MN42MNMN33MN38MN9MN4MN2MN2MN53MN18MN44MN31MN12MN85MIMD10MN26MN52MN15MN8MN59MN50MN167MN5MN56MN2MN20MN20MN53MN47MN49MN11MN21MN5MN32MN57MN19MN2MN8MN18M mismatches: 50 - insertions: 2 - deletions: 2
  • Influenza A virus (A/chicken/Saudi Arabia/CP7/1998(H9N2))

    Influenza A virus (A/chicken/Saudi Arabia/CP7/1998(H9N2))

    • Public DB hit
      GI:322518267
      CY081264
    • Hit length
      1,680 bp
    • E Value
      0E0
    • BLAST Score
      2,804.3 bits
    • Similarity
      96.79%
    • Coverage
      99.82%
    • Alignment (schematic)

      SEQ ID NO 2
      99.82% cov
      CY081264
      100% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      164MN22M2N44MDMI7MN172MN29MN24MN14MN8MNMN3MNMN12MN20MN38MN9MN4MN2MN2MN4MN14MN33MN7MN9MIMD30M2N12MN31MN12MN85MI2MD9MN26MN52MN15MN8MN15MN94MN167MN62MN23MN20MN53MN47MN49MN33MN5MN32MN57MN22MN8MN15M3H mismatches: 48 - insertions: 3 - deletions: 3
  • Influenza A virus (A/chicken/Middle East/ED-1/1999(H9N2))

    Influenza A virus (A/chicken/Middle East/ED-1/1999(H9N2))

    • Public DB hit
      GI:269826350
      GU053201
    • Hit length
      1,718 bp
    • E Value
      0E0
    • BLAST Score
      2,793.3 bits
    • Similarity
      96.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU053201
      97.96% cov
    • Alignment Length
      1,687 bp
    • CIGAR string
      72MN76MN14MN22M2N44MDMI13MN10MN12MN53MN41MN8MN37MN29MN54MNMN33MN4MN33MN9MN4MNMIMD2MN16MDMIMN33MN7MN55MN31MN12MN34MN50MIMD10MN29MN44MN20MN8MN110MN95MN17MN32MN20MN86MN74MN35MN11MN49MN33MN5MN32MN57MN22MN8MN18M mismatches: 49 - insertions: 4 - deletions: 4
  • Influenza A virus (A/chicken/Israel/90658/2000(H9N2))

    Influenza A virus (A/chicken/Israel/90658/2000(H9N2))

    • Public DB hit
      GI:153800214
      EF492221
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      2,793.3 bits
    • Similarity
      96.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EF492221
      98.59% cov
    • Alignment Length
      1,687 bp
    • CIGAR string
      72MN76MN14MN22M2N44MDMI58MN32MN59MN28M2N28MN54MNMN33MN4MN33MN9MN4MNMIMD2MN16MDMIMN33MN7MN55MN31MN12MN34MN29MN20MIMD10MN56MN17MN4MN15MN8MN110MN67MN27MN50MN20MN86MN74MN35MN11MN49MN33MN5MN32MN57MN22MN8MN18M mismatches: 49 - insertions: 4 - deletions: 4
  • Influenza A virus (A/chicken/Iran/TH77/1998(H9N2))

    Influenza A virus (A/chicken/Iran/TH77/1998(H9N2))

    • Public DB hit
      GI:169212579
      EU477241
    • Hit length
      1,742 bp
    • E Value
      0E0
    • BLAST Score
      2,793.3 bits
    • Similarity
      96.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EU477241
      96.61% cov
    • Alignment Length
      1,686 bp
    • CIGAR string
      9MN56MN5MN91MN22M2N44MDMI122MN57MN29MN48MN5MNMN33MN38MN9MN4MN2MN2MN17MD3MI32MN7MN10MN44MN28MN2MN12MN85MIMD10MN26MN52MN15MN8MN11MN9MN37MN50MN167MN5MN56MN2MN20MN20MN53MN47MN49MN11MN21MN5MN32MN57MN19MN2MN8MN18M mismatches: 51 - insertions: 3 - deletions: 3
  • Influenza A virus (A/chicken/Iran/661/1998(H9N2))

    Influenza A virus (A/chicken/Iran/661/1998(H9N2))

    • Public DB hit
      GI:257043871
      GQ497118
    • Hit length
      1,677 bp
    • E Value
      0E0
    • BLAST Score
      2,776.6 bits
    • Similarity
      96.55%
    • Coverage
      99.64%
    • Alignment (schematic)

      SEQ ID NO 2
      99.64% cov
      GQ497118
      100% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      4MD4MIN154MN22M2N44MDMI7MN131MN40MN29MN48MN5MNMN33MN38MN9MN4MNMIMD2MN17MD3MI32MN7MN10MN44MN31MN12MN85MIMD10MN26MN52MN15MN8MN11MN47MN50MN167MN5MN56MN2MN20MN20MN53MN47MN49MN33MN5MN32MN57MN19MN2MNMI2MD4MN12M6H mismatches: 46 - insertions: 6 - deletions: 6
  • Influenza A virus (A/chicken/Iran/698/1998(H9N2))

    Influenza A virus (A/chicken/Iran/698/1998(H9N2))

    • Public DB hit
      GI:257043869
      GQ497117
    • Hit length
      1,680 bp
    • E Value
      0E0
    • BLAST Score
      2,771.1 bits
    • Similarity
      96.43%
    • Coverage
      99.82%
    • Alignment (schematic)

      SEQ ID NO 2
      99.82% cov
      GQ497117
      100% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      8M2N10MN143MN6MN15M2N41MN2MDMI7MN76MN95MN29MN26MN21MN5MNMN33MN38MN9MN4MNMIMD2MN19MN33MN7MN10MN2MN41MN31MN12MN46MN32MN5MIMD10MN26MN52MN15MN8MN17MN41MN50MN167MN5MN56MN23MN20MN53MN47MN49MN33MN5MN32MN56M2N22MN8MN15M3H mismatches: 54 - insertions: 3 - deletions: 3
  • Influenza A virus (A/turkey/Neve Ilan/90710/2000(H9N2))

    Influenza A virus (A/turkey/Neve Ilan/90710/2000(H9N2))

    • Public DB hit
      GI:56785885
      AY738451
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      2,765.6 bits
    • Similarity
      96.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY738451
      98.59% cov
    • Alignment Length
      1,687 bp
    • CIGAR string
      72MN76MN14MN22M2N44MDMI58MN32MN59MN28M2N28MN54MNMN33MN4MN33MN9MN4MN2MN2MN16MDMIMN33MN7MN41MN13MN31MN12MN64MN20MIMD10MN56MN17MN4MN15MN8MN83MN26MN67MN27MN50MN20MN86MN5MN5MN2MDMNI57MN35MN11MN49MN33MN5MN32MN57MN22MN8MN18M mismatches: 54 - insertions: 4 - deletions: 4
  • Influenza A virus (A/chicken/Pakistan/2/1999(H9N2))

    Influenza A virus (A/chicken/Pakistan/2/1999(H9N2))

    • Public DB hit
      GI:12038887
      AJ291392
    • Hit length
      1,701 bp
    • E Value
      0E0
    • BLAST Score
      2,760 bits
    • Similarity
      96.53%
    • Coverage
      99.11%
    • Alignment (schematic)

      SEQ ID NO 2
      99.11% cov
      AJ291392
      98.06% cov
    • Alignment Length
      1,671 bp
    • CIGAR string
      10MN153MN2MN19M2N44MIMD73MN51MN2MN51MN29MN11MN14MN22MN4M2N34MN38MN9MN4MNMIMD2MN12MN6MN33MN49MN13MN31MN12MN85MI2MD9MN95MN8MN15MN5MN19MN68MN44MN32MN134MN17MN23MN20MN2MN50MN8MN38MN49MN33MN5MN32MN29MN2MN24MN16MN18M15H mismatches: 52 - insertions: 3 - deletions: 3
  • Influenza A virus (A/chicken/Pakistan/5/99(H9N2))

    Influenza A virus (A/chicken/Pakistan/5/99(H9N2))

    • Public DB hit
      GI:33317942
      AF508556
    • Hit length
      1,648 bp
    • E Value
      0E0
    • BLAST Score
      2,739.7 bits
    • Similarity
      96.67%
    • Coverage
      97.92%
    • Alignment (schematic)

      SEQ ID NO 2
      97.92% cov
      AF508556
      100% cov
    • Alignment Length
      1,651 bp
    • CIGAR string
      10MN153MN2MN19M2N44MIMD73MN51MN54MN29MN11MN14MN22MN4M2N34MN38MN9MN4MNMIMD2MN12MN6MN33MN63MN31MN12MN85MI2MD9MN95MN8MN15MN5MN19MN68MN44MN32MN134MN17MN23MN20MN2MN50MN8MN38MN49MN33MN5MN32MN29MN2MN24MN15M35H mismatches: 49 - insertions: 3 - deletions: 3
  • Influenza A virus (A/turkey/Israel/619/2002(H9N2))

    Influenza A virus (A/turkey/Israel/619/2002(H9N2))

    • Public DB hit
      GI:153800248
      EF492229
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      2,726.8 bits
    • Similarity
      95.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EF492229
      98.59% cov
    • Alignment Length
      1,687 bp
    • CIGAR string
      72MN76MN14MN22M2N44MIMD58MN32MN59MN28M2N28MN54MNMN33MN4MN33MN9MN4MN2MN2MN16MDMN2MI32MN7MN21MN33MN31MN12MN7MN26MN29MN20MI2MD9MN56MN17MN4M2N14MN8MN46MIMD35MN26MN67MN27MN50MN20MN14MN71MN26MN35MN11MN14MN20MN11MN49MN18MN14MN5MN5MN26MN16MN40MN22MN8MN18M mismatches: 61 - insertions: 4 - deletions: 4
  • Influenza A virus (A/chicken/Pakistan/4/99(H9N2))

    Influenza A virus (A/chicken/Pakistan/4/99(H9N2))

    • Public DB hit
      GI:33317940
      AF508555
    • Hit length
      1,636 bp
    • E Value
      0E0
    • BLAST Score
      2,723.1 bits
    • Similarity
      96.71%
    • Coverage
      97.21%
    • Alignment (schematic)

      SEQ ID NO 2
      97.21% cov
      AF508555
      100% cov
    • Alignment Length
      1,639 bp
    • CIGAR string
      12H26MN23MN9MN91MN22M2N44MDMI73MN106MN29MNMN24MN23MN3M2N34MN38MN9MN4MNMIMD2MN3MN15MN33MN49MN13MN31MN12MN61MN23MIMD10MN95MN8MN15MN25MN68MN230MN23MN6MN13MN2MN41MN8MN20MN26MN49MN33MN5MN32MN32MN24MN15M35H mismatches: 48 - insertions: 3 - deletions: 3
  • Influenza A virus (A/turkey/Israel/810/2001(H9N2))

    Influenza A virus (A/turkey/Israel/810/2001(H9N2))

    • Public DB hit
      GI:153800256
      EF492233
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      2,721.2 bits
    • Similarity
      95.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EF492233
      98.59% cov
    • Alignment Length
      1,688 bp
    • CIGAR string
      72MN76MN14MN22M2N44MIMD58MN32MN59MN28M2N28MN54MNMN33MN4MN33MN9MN4MNMIMD2MN16MDMN2MI32MN7MN21MN33MN31MN12MN7MN26MN29MN20MI2MD9MN56MN17MN4M2N14MN8MN46MIMD35MN26MN67MN27MN50MN20MN14MN71MN26MN35MN11MN14MN20MN11MN49MN18MN14MN5MN5MN26MN16MN40MN22MN8MN18M mismatches: 60 - insertions: 5 - deletions: 5
  • Influenza A virus (A/chicken/Israel/786/2001(H9N2))

    Influenza A virus (A/chicken/Israel/786/2001(H9N2))

    • Public DB hit
      GI:153800252
      EF492231
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      2,721.2 bits
    • Similarity
      95.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EF492231
      98.59% cov
    • Alignment Length
      1,687 bp
    • CIGAR string
      14MN57MN76M2N13MN22M2N44MIMD58MN32MN59MN28M2N28MN54MNMN33MN4MN33MN9MN4MNMIMD2MN16MDMN2MI32MN7MN21MN33MN31MN12MN7MN56MN20MI2MD9MN56MN17MN4M2N14MN8MN46MN36MN26MN67MN27MN50MN20MN14MN71MN26MN35MN11MN14MN20MN11MN49MN11MN6MN14MN5MN32MN16MN40MN22MN8MN18M mismatches: 62 - insertions: 4 - deletions: 4
  • Influenza A virus (A/ostrich/Eshkol/1436/2003(H9N2))

    Influenza A virus (A/ostrich/Eshkol/1436/2003(H9N2))

    • Public DB hit
      GI:56785895
      AY738456
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      2,721.2 bits
    • Similarity
      95.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY738456
      98.59% cov
    • Alignment Length
      1,687 bp
    • CIGAR string
      38MN33MN76MN14MN22M2N44MDMI58MN32MN59MN28M2N28MN54MNMN33MN4MN33MN9MN4MN2MN2MN16MDMIMN33MN7MN21MN33MN31MN12MN7MN26MN13MN15MN20MIMD10MN56MN17MN4MN15MN5MN2MN29MN14MI3MD35MN26MN95MN50MN20MN14MN71MN26MN35MN11MN35MN11MN49MN18MN14MN5MN5MN26MN16MN40MN22MN8MN18M mismatches: 62 - insertions: 4 - deletions: 4
  • Influenza A virus (A/chicken/Tel Adashim/786/2001(H9N2))

    Influenza A virus (A/chicken/Tel Adashim/786/2001(H9N2))

    • Public DB hit
      GI:56785891
      AY738454
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      2,721.2 bits
    • Similarity
      95.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY738454
      98.59% cov
    • Alignment Length
      1,687 bp
    • CIGAR string
      14MN57MN76M2N13MN22M2N44MIMD58MN32MN59MN28M2N28MN54MNMN33MN4MN33MN9MN4MNMIMD2MN16MDMN2MI32MN7MN21MN33MN31MN12MN7MN56MN20MI2MD9MN56MN17MN4M2N14MN8MN46MN36MN26MN67MN27MN50MN20MN14MN71MN26MN35MN11MN14MN20MN11MN49MN11MN6MN14MN5MN32MN16MN40MN22MN8MN18M mismatches: 62 - insertions: 4 - deletions: 4
  • Influenza A virus (A/quail/Dubai/301/2000(H9N2))

    Influenza A virus (A/quail/Dubai/301/2000(H9N2))

    • Public DB hit
      GI:120432627
      EF063510
    • Hit length
      1,714 bp
    • E Value
      0E0
    • BLAST Score
      2,710.2 bits
    • Similarity
      95.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EF063510
      98.19% cov
    • Alignment Length
      1,686 bp
    • CIGAR string
      164MN22MN43MNMIMD24MN8MN39MN53MN15MN7MN28MN15MN5MN5MNMN11MN30MN11M2N10MN2MN20MN38MN8MDMI4MN2MN2MN13MN5MN21MN11MN2MN38MN21MN13M2N2MN13MN12MNMN83MI2MD9MN41MN38MN14MN8MN15MNMN50MN41MN122MN11MN50MN44MN23MN20MN26MN26MN45MNMN2MN46MN33MN5MN32MN17MN14MN24MN31MN18M mismatches: 66 - insertions: 3 - deletions: 3
Occurrence
72 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
759
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
unidentified influenza virus

Determined organism:
  • Influenza A virus (A/Hong Kong/1073/99(H9N2))

    Influenza A virus (A/Hong Kong/1073/99(H9N2))

    • Public DB hit
      GI:13925071
      AF255363
      1 of 3 hits reported for Influenza A virus (A/Hong Kong/1073/99(H9N2)).
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,402.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF255363
      73.9% cov
    • Alignment Length
      759 bp
    • CIGAR string
      759M mismatches: 0 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Teal/Hong Kong/W312/97(H6N1))

    Influenza A virus (A/Teal/Hong Kong/W312/97(H6N1))

    • Public DB hit
      GI:9437969
      AF250482
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,386.1 bits
    • Similarity
      99.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF250482
      73.9% cov
    • Alignment Length
      759 bp
    • CIGAR string
      455MN215MN75MN11M mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/pheasant/Hong Kong/SH39/99(H6N1))

    Influenza A virus (A/pheasant/Hong Kong/SH39/99(H6N1))

    • Public DB hit
      GI:18074948
      AJ410568
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,369.5 bits
    • Similarity
      99.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AJ410568
      73.9% cov
    • Alignment Length
      759 bp
    • CIGAR string
      290MN77MN86MN209MN5MN75MN11M mismatches: 6 - insertions: 0 - deletions: 0
  • Influenza A virus (A/environment/Hong Kong/258/1997(H5))

    Influenza A virus (A/environment/Hong Kong/258/1997(H5))

    • Public DB hit
      GI:269825388
      GU052178
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,363.9 bits
    • Similarity
      99.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      GU052178
      75.75% cov
    • Alignment Length
      759 bp
    • CIGAR string
      173MN281MN188MN26MN62MN5MN6MN11M mismatches: 7 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Chicken/Hong Kong/220/97 (H5N1))

    Influenza A virus (A/Chicken/Hong Kong/220/97 (H5N1))

    • Public DB hit
      GI:3335406
      AF046082
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,363.9 bits
    • Similarity
      99.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF046082
      75.75% cov
    • Alignment Length
      759 bp
    • CIGAR string
      173MN281MN188MN26MN62MN5MN6MN11M mismatches: 7 - insertions: 0 - deletions: 0
  • Influenza A virus (A/chicken/Hong Kong/SF3/2001(H6N1))

    Influenza A virus (A/chicken/Hong Kong/SF3/2001(H6N1))

    • Public DB hit
      GI:307077473
      AB586806
    • Hit length
      948 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB586806
      80.06% cov
    • Alignment Length
      759 bp
    • CIGAR string
      233MN60MN31MN72MN55MN134MN80MN75MN11M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/quail/Shantou/1821/2000(H6N1))

    Influenza A virus (A/quail/Shantou/1821/2000(H6N1))

    • Public DB hit
      GI:153973110
      EU049990
    • Hit length
      982 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EU049990
      77.29% cov
    • Alignment Length
      759 bp
    • CIGAR string
      233MN60MN31MN72MN55MN134MN80MN75MN11M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Hong Kong/1074/99(H9N2))

    Influenza A virus (A/Hong Kong/1074/99(H9N2))

    • Public DB hit
      GI:13925075
      AF255364
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF255364
      73.9% cov
    • Alignment Length
      759 bp
    • CIGAR string
      233MN36MN23MN22MN137MN134MN80MN75MN11M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/pheasant/Hong Kong/NT261/00(H6N1))

    Influenza A virus (A/pheasant/Hong Kong/NT261/00(H6N1))

    • Public DB hit
      GI:18074958
      AJ410573
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AJ410573
      73.9% cov
    • Alignment Length
      759 bp
    • CIGAR string
      47MN191MN32MN17MN164MN137MN77MN75MN11M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/quail/Hong Kong/SF595/00(H6N1))

    Influenza A virus (A/quail/Hong Kong/SF595/00(H6N1))

    • Public DB hit
      GI:18074956
      AJ410572
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AJ410572
      73.9% cov
    • Alignment Length
      759 bp
    • CIGAR string
      233MN60MN31MN72MN55MN134MN80MN75MN11M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/quail/Hong Kong/SF550/00(H6N1))

    Influenza A virus (A/quail/Hong Kong/SF550/00(H6N1))

    • Public DB hit
      GI:18074954
      AJ410571
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AJ410571
      73.9% cov
    • Alignment Length
      759 bp
    • CIGAR string
      233MN60MN31MN128MN26MN107MN80MN75MN11M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Hong Kong/481/97(H5N1))

    Influenza A virus (A/Hong Kong/481/97(H5N1))

    • Public DB hit
      GI:8452831
      AF115286
    • Hit length
      982 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF115286
      77.29% cov
    • Alignment Length
      759 bp
    • CIGAR string
      296MN158MN35MN152MN26MN62MN5MN6MN11M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Hong Kong/485/1997(H5N1))

    Influenza A virus (A/Hong Kong/485/1997(H5N1))

    • Public DB hit
      GI:8307812
      AF084284
    • Hit length
      982 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      98.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF084284
      77.29% cov
    • Alignment Length
      759 bp
    • CIGAR string
      43MN129MN281MN188MN26MN62MN5MN6MN11M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Chicken/Hong Kong/258/97 (H5N1))

    Influenza A virus (A/Chicken/Hong Kong/258/97 (H5N1))

    • Public DB hit
      GI:6048790
      AF098560
    • Hit length
      972 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      99.07%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 3
      99.6% cov
      AF098560
      77.78% cov
    • Alignment Length
      756 bp
    • CIGAR string
      3H170MN281MN188MN26MN62MN5MN6MN11M mismatches: 7 - insertions: 0 - deletions: 0
  • Influenza A virus (A/guinea fowl/Hong Kong/SSP99/2002(H6N2))

    Influenza A virus (A/guinea fowl/Hong Kong/SSP99/2002(H6N2))

    • Public DB hit
      GI:307077911
      AB586854
    • Hit length
      989 bp
    • E Value
      0E0
    • BLAST Score
      1,352.9 bits
    • Similarity
      98.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB586854
      76.74% cov
    • Alignment Length
      759 bp
    • CIGAR string
      233MN60MN31MN72MN49MN5MN134MN80MN75MN11M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/chicken/Hong Kong/SF4/2001(H6N1))

    Influenza A virus (A/chicken/Hong Kong/SF4/2001(H6N1))

    • Public DB hit
      GI:307077489
      AB586814
    • Hit length
      981 bp
    • E Value
      0E0
    • BLAST Score
      1,352.9 bits
    • Similarity
      98.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB586814
      77.37% cov
    • Alignment Length
      759 bp
    • CIGAR string
      233MN60MN31MN72MN52MN2MN134MN80MN75MN11M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Hong Kong/483/1997(H5N1))

    Influenza A virus (A/Hong Kong/483/1997(H5N1))

    • Public DB hit
      GI:269825355
      GU052098
      1 of 3 hits reported for Influenza A virus (A/Hong Kong/483/1997(H5N1)).
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,352.9 bits
    • Similarity
      98.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      GU052098
      75.75% cov
    • Alignment Length
      759 bp
    • CIGAR string
      66MN106MN281MN86MN101MN26MN62MN5MN6MN11M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/quail/Shantou/2185/2000(H6N2))

    Influenza A virus (A/quail/Shantou/2185/2000(H6N2))

    • Public DB hit
      GI:153973113
      EU049991
    • Hit length
      982 bp
    • E Value
      0E0
    • BLAST Score
      1,352.9 bits
    • Similarity
      98.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EU049991
      77.29% cov
    • Alignment Length
      759 bp
    • CIGAR string
      233MN60MN31MN72MNMN53MN134MN80MN75MN11M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/quail/Shantou/1318/2000(H9N2))

    Influenza A virus (A/quail/Shantou/1318/2000(H9N2))

    • Public DB hit
      GI:120970332
      EF154983
    • Hit length
      982 bp
    • E Value
      0E0
    • BLAST Score
      1,352.9 bits
    • Similarity
      98.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF154983
      77.29% cov
    • Alignment Length
      759 bp
    • CIGAR string
      86MN17MN350MN95MN41MN17MN59MN68MN6MN11M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/duck/Vietnam/8/05(H5N1))

    Influenza A virus (A/duck/Vietnam/8/05(H5N1))

    • Public DB hit
      GI:86753789
      DQ366325
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,352.9 bits
    • Similarity
      98.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      DQ366325
      73.9% cov
    • Alignment Length
      759 bp
    • CIGAR string
      116MN227MN110MN98MN89MN26MN62MN5MN6MN11M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/parakeet/Chiba/1/97(H9N2))

    Influenza A virus (A/parakeet/Chiba/1/97(H9N2))

    • Public DB hit
      GI:13383290
      AB049165
    • Hit length
      982 bp
    • E Value
      0E0
    • BLAST Score
      1,352.9 bits
    • Similarity
      98.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB049165
      77.29% cov
    • Alignment Length
      760 bp
    • CIGAR string
      455MN86MN101MN20MN5MN62MD2MI3MN6MN11M mismatches: 7 - insertions: 1 - deletions: 1
Occurrence
60 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
31
Type
nucleotide
Locations
Undetermined

Declared organism:
unidentified influenza virus

Determined organism:
Occurrence
41 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
33
Type
nucleotide
Locations
Undetermined

Declared organism:
unidentified influenza virus

Determined organism:
Occurrence
41 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
32
Type
nucleotide
Locations
Undetermined

Declared organism:
unidentified influenza virus

Determined organism:
Occurrence
41 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
32
Type
nucleotide
Locations
Undetermined

Declared organism:
unidentified influenza virus

Determined organism:
Occurrence
41 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
30
Type
nucleotide
Locations
Undetermined

Declared organism:
unidentified influenza virus

Determined organism:
Occurrence
41 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
31
Type
nucleotide
Locations
Undetermined

Declared organism:
unidentified influenza virus

Determined organism:
Occurrence
41 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
1,707
Type
nucleotide
Locations
Detailed Description

Declared organism:
unidentified influenza virus

Determined organism:
  • Influenza A virus (A/Indonesia/5/2005(H5N1))

    Influenza A virus (A/Indonesia/5/2005(H5N1))

    • Public DB hit
      GI:145284449
      EF541394
      1 of 3 hits reported for Influenza A virus (A/Indonesia/5/2005(H5N1)).
    • Hit length
      1,729 bp
    • E Value
      0E0
    • BLAST Score
      3,153.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EF541394
      98.73% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      1707M mismatches: 0 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/TLL007/2006(H5N1))

    Influenza A virus (A/Indonesia/TLL007/2006(H5N1))

    • Public DB hit
      GI:158604871
      EU015409
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,131.2 bits
    • Similarity
      99.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU015409
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      686MN515MN107MN335MN60M mismatches: 4 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Chicken/Murao Jambi/BBPV-II/2005(H5N1))

    Influenza A virus (A/Chicken/Murao Jambi/BBPV-II/2005(H5N1))

    • Public DB hit
      GI:156989944
      EU124097
    • Hit length
      1,711 bp
    • E Value
      0E0
    • BLAST Score
      3,131.2 bits
    • Similarity
      99.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU124097
      99.77% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      26MN134MN77MN698MN768M mismatches: 4 - insertions: 0 - deletions: 0
  • Influenza A virus (A/chicken/West Java/TASIKSOB/2006(H5N1))

    Influenza A virus (A/chicken/West Java/TASIKSOB/2006(H5N1))

    • Public DB hit
      GI:156994258
      EU124277
    • Hit length
      1,735 bp
    • E Value
      0E0
    • BLAST Score
      3,120.1 bits
    • Similarity
      99.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU124277
      98.39% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      93MN232MN395MN26MN560MN123MN272M mismatches: 6 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Chicken/Indonesia/Rejang Lebong1631-22/2006(H5N1))

    Influenza A virus (A/Chicken/Indonesia/Rejang Lebong1631-22/2006(H5N1))

    • Public DB hit
      GI:156992293
      EU124204
    • Hit length
      1,736 bp
    • E Value
      0E0
    • BLAST Score
      3,120.1 bits
    • Similarity
      99.71%
    • Coverage
      99.82%
    • Alignment (schematic)

      SEQ ID NO 10
      99.82% cov
      EU124204
      98.16% cov
    • Alignment Length
      1,704 bp
    • CIGAR string
      203MN248MN291MN391MN308MN258M3H mismatches: 5 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Chicken/West Java/TASIKSOL/2006(H5N1))

    Influenza A virus (A/Chicken/West Java/TASIKSOL/2006(H5N1))

    • Public DB hit
      GI:156991606
      EU124151
    • Hit length
      1,715 bp
    • E Value
      0E0
    • BLAST Score
      3,120.1 bits
    • Similarity
      99.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU124151
      99.53% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      507MN631MN62MN107MN84MN250MN60M mismatches: 6 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Chicken/Pakun Baru/BPPV-II/2005(H5N1))

    Influenza A virus (A/Chicken/Pakun Baru/BPPV-II/2005(H5N1))

    • Public DB hit
      GI:156989952
      EU124101
    • Hit length
      1,710 bp
    • E Value
      0E0
    • BLAST Score
      3,120.1 bits
    • Similarity
      99.71%
    • Coverage
      99.82%
    • Alignment (schematic)

      SEQ ID NO 10
      99.82% cov
      EU124101
      99.65% cov
    • Alignment Length
      1,704 bp
    • CIGAR string
      26MN134MN77MN271MN426MN765M3H mismatches: 5 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/TLL011/2006(H5N1))

    Influenza A virus (A/Indonesia/TLL011/2006(H5N1))

    • Public DB hit
      GI:158604879
      EU015413
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,114.6 bits
    • Similarity
      99.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU015413
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      356MN416MN428MN29MN77MN230MN104MN60M mismatches: 7 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/TLL010/2006(H5N1))

    Influenza A virus (A/Indonesia/TLL010/2006(H5N1))

    • Public DB hit
      GI:158604877
      EU015412
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,114.6 bits
    • Similarity
      99.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU015412
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      356MN416MN428MN29MN77MN230MN104MN60M mismatches: 7 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/TLL006/2006(H5N1))

    Influenza A virus (A/Indonesia/TLL006/2006(H5N1))

    • Public DB hit
      GI:158604869
      EU015408
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,114.6 bits
    • Similarity
      99.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU015408
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      161MN257MN470MN245MN173MN17MN329MN48M mismatches: 7 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/TLL005/2006(H5N1))

    Influenza A virus (A/Indonesia/TLL005/2006(H5N1))

    • Public DB hit
      GI:158604867
      EU015407
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,114.6 bits
    • Similarity
      99.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU015407
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      356MN416MN428MN29MN77MN230MN104MN60M mismatches: 7 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/283H/2006(H5N1))

    Influenza A virus (A/Indonesia/283H/2006(H5N1))

    • Public DB hit
      GI:157955769
      EU146681
    • Hit length
      1,752 bp
    • E Value
      0E0
    • BLAST Score
      3,114.6 bits
    • Similarity
      99.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU146681
      97.43% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      326MN422MN5MN350MN203MN92MN30MN272M mismatches: 7 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/CDC523/2006(H5N1))

    Influenza A virus (A/Indonesia/CDC523/2006(H5N1))

    • Public DB hit
      GI:113496046
      CY014311
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,110.9 bits
    • Similarity
      99.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CY014311
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      56MN479MN57MN445MN161MN107MN257MN77MN60M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/TLL008/2006(H5N1))

    Influenza A virus (A/Indonesia/TLL008/2006(H5N1))

    • Public DB hit
      GI:158604873
      EU015410
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,109 bits
    • Similarity
      99.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU015410
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      161MN257MN470MN88MN156MN173MN17MN329MN48M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/286H/2006(H5N1))

    Influenza A virus (A/Indonesia/286H/2006(H5N1))

    • Public DB hit
      GI:157955752
      EU146688
    • Hit length
      1,729 bp
    • E Value
      0E0
    • BLAST Score
      3,109 bits
    • Similarity
      99.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU146688
      98.73% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      326MN422MN5MN263MN86MN203MN92MN30MN272M mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/TLL009/2006(H5N1))

    Influenza A virus (A/Indonesia/TLL009/2006(H5N1))

    • Public DB hit
      GI:158604875
      EU015411
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,107.2 bits
    • Similarity
      99.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU015411
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      205MN381MN87MN193MN215MN166MN57MN299MN35MN60M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/TLL003/2006(H5N1))

    Influenza A virus (A/Indonesia/TLL003/2006(H5N1))

    • Public DB hit
      GI:158604863
      EU015405
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,103.5 bits
    • Similarity
      99.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU015405
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      205MN381MN174MN106MN215MN166MN57MN335MN41MN18M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/542H/2006(H5N1))

    Influenza A virus (A/Indonesia/542H/2006(H5N1))

    • Public DB hit
      GI:157955530
      EU146777
    • Hit length
      1,710 bp
    • E Value
      0E0
    • BLAST Score
      3,103.5 bits
    • Similarity
      99.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU146777
      99.82% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      6MNMN347MN416MN428MN29MN77MN230MN104MN60M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Chicken/Indonesia/Lampung1631-23/2006(H5N1))

    Influenza A virus (A/Chicken/Indonesia/Lampung1631-23/2006(H5N1))

    • Public DB hit
      GI:156992294
      EU124205
    • Hit length
      1,736 bp
    • E Value
      0E0
    • BLAST Score
      3,103.5 bits
    • Similarity
      99.53%
    • Coverage
      99.82%
    • Alignment (schematic)

      SEQ ID NO 10
      99.82% cov
      EU124205
      98.16% cov
    • Alignment Length
      1,704 bp
    • CIGAR string
      149MN308MN86MN221MN227MN206MN107MN335MN57M3H mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Muscovy Duck/Jakarta/HABWIN/2006(H5N1))

    Influenza A virus (A/Muscovy Duck/Jakarta/HABWIN/2006(H5N1))

    • Public DB hit
      GI:156991602
      EU124149
    • Hit length
      1,734 bp
    • E Value
      0E0
    • BLAST Score
      3,103.5 bits
    • Similarity
      99.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU124149
      98.44% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      356MN26MN374MN434MN8MN29MN77MN285MN49MN60M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/CDC669P/2006(H5N1))

    Influenza A virus (A/Indonesia/CDC669P/2006(H5N1))

    • Public DB hit
      GI:113497214
      CY014489
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,103.5 bits
    • Similarity
      99.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CY014489
      100% cov
    • Alignment Length
      1,707 bp
    • CIGAR string
      356MN381MN358MN104MN29MN77MN119MN185MN29MN60M mismatches: 9 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/195H/2005(H5N1))

    Influenza A virus (A/Indonesia/195H/2005(H5N1))

    • Public DB hit
      GI:157955825
      EU146656
    • Hit length
      1,700 bp
    • E Value
      0E0
    • BLAST Score
      3,101.6 bits
    • Similarity
      99.7%
    • Coverage
      99.24%
    • Alignment (schematic)

      SEQ ID NO 10
      99.24% cov
      EU146656
      99.65% cov
    • Alignment Length
      1,694 bp
    • CIGAR string
      598MN31MN310MN194MN383MN173M13H mismatches: 5 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Indonesia/304H/2006(H5N1))

    Influenza A virus (A/Indonesia/304H/2006(H5N1))

    • Public DB hit
      GI:157955718
      EU146705
    • Hit length
      1,707 bp
    • E Value
      0E0
    • BLAST Score
      3,101.6 bits
    • Similarity
      99.53%
    • Coverage
      99.82%
    • Alignment (schematic)

      SEQ ID NO 10
      99.82% cov
      EU146705
      99.77% cov
    • Alignment Length
      1,704 bp
    • CIGAR string
      310MN15MN404MN17MN560MN123MN13MN249MD5M3H mismatches: 7 - insertions: 0 - deletions: 1
Occurrence
74 times in PatSeqDB
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