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Data obtained from: EPO Sequence Listings

291 sequences found in this patent (in total)

Displaying 1 - 10 of 291 sequences

SEQ ID NO

Length

Type

Locations

Organisms

Occurrence

Tools

SEQ ID NO

Length

1,362

Type

DNA

Locations

Fulltext

Declared organism:
Vibrio fluvialis

Determined organism:

Vibrio fluvialis
Vibrio fluvialis
Public DB hit
GI:327207065
HQ418483

Hit length
2,001 bp

E Value
0E0

BLAST Score
2,510.7 bits

Similarity

99.93%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
HQ418483

68.07% cov

Alignment Length
1,362 bp

CIGAR string
710MN651M mismatches: 1 - insertions: 0 - deletions: 0
Paracoccus denitrificans PD1222
Paracoccus denitrificans PD1222
Public DB hit
GI:119376152
CP000490

Hit length
1,730,097 bp

E Value
0E0

BLAST Score
1,613.2 bits

Similarity

88.08%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP000490

0.08% cov

Alignment Length
1,368 bp

CIGAR string
6MN43MN17MN3MNMN8MN29MN17M2N7MN2MN8MN5MN29MN11MN8MN11MN8MN2MN8MN29MN5MN2MN26MN5MN2MN2M2NI3MD6MN8MN2MN2MN2MN11MN20MN14MN11MN23MN29MN9MNIMD17MN2MN8MN14MN5M2NMN2MN32MN2MN5MN5MNMN3MN14MN2MN8MN5MN2MN3MDMNMI25MN5MN5MN17MN2MN5MD3MI5MN5MN11MN8MN3MN7MN12MNMN23MN5MN8MN15MN7MN5MNM2N8MN17MN2MN2MN8MN5MN5MN2MN2MN5MN2MI4MDMN2M2N4MN3MNMN2M2N4M2N16MN5MN2MN5MN26MN2MN2MN8MN2MN17MN2MN8MN5MN11MN2MN5MN7M3N7MNM2N8MN14MN5MN32MN12MNMNMN6MN2MN7MN3MN2MN14MN32MN11MN2MN6MN4MN2MN2MN8MN23MN11MD3MI2MN5MN2MN2MN2MN17MN6M mismatches: 151 - insertions: 6 - deletions: 6
Ketogulonicigenium vulgare Y25
Ketogulonicigenium vulgare Y25
Public DB hit
GI:308753268
CP002224

Hit length
2,776,084 bp

E Value
0E0

BLAST Score
712.1 bits

Similarity

77.41%

Coverage

93.91%

Alignment (schematic)

SEQ ID NO 1

93.91% cov
CP002224

0.05% cov

Alignment Length
1,319 bp

CIGAR string
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 mismatches: 218 - insertions: 40 - deletions: 40

Occurrence

42 times in PatSeqDB

in 8 families
in 40 documents

Tools

PatSeq Finder

SEQ ID NO

Length

453

Type

peptide

Locations

Fulltext

Declared organism:
Vibrio fluvialis

Determined organism:

Vibrio fluvialis
Vibrio fluvialis
Public DB hit
GI:327207066
AEA39183

Hit length
453 aa

E Value
0E0

BLAST Score
942.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
AEA39183

100% cov

Alignment Length
453 aa

CIGAR string
453M mismatches: 0 - insertions: 0 - deletions: 0
Paracoccus denitrificans PD1222
Paracoccus denitrificans PD1222
Public DB hit
GI:119386691
YP_917746

Hit length
453 aa

E Value
0E0

BLAST Score
899 bits

Similarity

98.01%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
YP_917746

100% cov

Alignment Length
453 aa

CIGAR string
2MN21MN19MN24MN6MN30MN68MN17MN11MN2MN42MN18MN4MN24MNMN2MNMNMN46M2N2MN2MN22M2N5MN25MN17MN14M mismatches: 27 - insertions: 0 - deletions: 0
Rhodobacter sphaeroides KD131
Rhodobacter sphaeroides KD131
Public DB hit
GI:221639807
YP_002526069

Hit length
455 aa

E Value
0E0

BLAST Score
787.3 bits

Similarity

90.71%

Coverage

99.78%

Alignment (schematic)

SEQ ID NO 2

99.78% cov
YP_002526069

99.34% cov

Alignment Length
452 aa

CIGAR string
1H2NMN3MN2M3NMN5MN2MN7MN3MN4MN2MN2MN17MN3MN36M2N23MN4MNM2N3MN2MNMN18MN8MNM2N6MNM2N4M2NM2N7MN2M2N2MN20M2N6MNMNM2NMN2MNMN16MN4MN9MN16M2N2M2NMN2MN36MNMNMN2M2NMNMN2MN5MN2MNMNMN9MN4MNMN9MN3MN10MN7MN9MN2M2N2MN7M mismatches: 82 - insertions: 0 - deletions: 0
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides ATCC 17025
Public DB hit
GI:146276907
YP_001167066

Hit length
455 aa

E Value
0E0

BLAST Score
785.4 bits

Similarity

90.71%

Coverage

99.78%

Alignment (schematic)

SEQ ID NO 2

99.78% cov
YP_001167066

99.34% cov

Alignment Length
452 aa
Rhodobacter sphaeroides ATCC 17029
Rhodobacter sphaeroides ATCC 17029
Public DB hit
GI:126462794
YP_001043908

Hit length
455 aa

E Value
0E0

BLAST Score
784.6 bits

Similarity

90.71%

Coverage

99.78%

Alignment (schematic)

SEQ ID NO 2

99.78% cov
YP_001043908

99.34% cov

Alignment Length
452 aa
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1
Public DB hit
GI:77463951
YP_353455

Hit length
455 aa

E Value
0E0

BLAST Score
782.3 bits

Similarity

90.49%

Coverage

99.78%

Alignment (schematic)

SEQ ID NO 2

99.78% cov
YP_353455

99.34% cov

Alignment Length
452 aa
Ketogulonicigenium vulgare Y25
Ketogulonicigenium vulgare Y25
Public DB hit
GI:310815369
YP_003963333

Hit length
455 aa

E Value
0E0

BLAST Score
761.9 bits

Similarity

87.83%

Coverage

99.78%

Alignment (schematic)

SEQ ID NO 2

99.78% cov
YP_003963333

99.34% cov

Alignment Length
452 aa
Thalassobium sp. R2A62
Thalassobium sp. R2A62
Public DB hit
GI:255263966
ZP_05343308

Hit length
455 aa

E Value
0E0

BLAST Score
742.3 bits

Similarity

87.72%

Coverage

98.9%

Alignment (schematic)

SEQ ID NO 2

98.9% cov
ZP_05343308

98.46% cov

Alignment Length
448 aa
Rhodobacteraceae bacterium HTCC2150
Rhodobacteraceae bacterium HTCC2150
Public DB hit
GI:126725637
ZP_01741479

Hit length
455 aa

E Value
0E0

BLAST Score
729.6 bits

Similarity

86.28%

Coverage

99.78%

Alignment (schematic)

SEQ ID NO 2

99.78% cov
ZP_01741479

99.34% cov

Alignment Length
452 aa
Jannaschia sp. CCS1
Jannaschia sp. CCS1
Public DB hit
GI:89053612
YP_509063

Hit length
453 aa

E Value
0E0

BLAST Score
726.9 bits

Similarity

86.86%

Coverage

99.12%

Alignment (schematic)

SEQ ID NO 2

99.12% cov
YP_509063

98.68% cov

Alignment Length
449 aa
Roseobacter sp. MED193
Roseobacter sp. MED193
Public DB hit
GI:86139591
ZP_01058159

Hit length
456 aa

E Value
4.34E-173

BLAST Score
613.2 bits

Similarity

76.92%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ZP_01058159

99.78% cov

Alignment Length
455 aa
Chelativorans sp. BNC1
Chelativorans sp. BNC1
Public DB hit
GI:110347053
YP_665871

Hit length
457 aa

E Value
3.52E-172

BLAST Score
610.1 bits

Similarity

78.57%

Coverage

98.9%

Alignment (schematic)

SEQ ID NO 2

98.9% cov
YP_665871

98.03% cov

Alignment Length
448 aa

Occurrence

321 times in PatSeqDB

in 56 extended families
(43 referenced in claims)
in 58 simple families
(44 referenced in claims)
in 274 documents

Tools

PatSeq Finder

SEQ ID NO

Length

1,362

Type

DNA

Locations

Fulltext

Declared organism:
Artificial

Determined organism:

Vibrio fluvialis
Vibrio fluvialis
Public DB hit
GI:327207065
HQ418483

Hit length
2,001 bp

E Value
0E0

BLAST Score
1,002 bits

Similarity

80.58%

Coverage

97.06%

Alignment (schematic)

SEQ ID NO 3

97.06% cov
HQ418483

66.07% cov

Alignment Length
1,339 bp

CIGAR string
18H8MN2MN2MN2MN5MIMNMD2MN2MN2MD3MI5MN5MN2MN5MN5MN2MN2MN2MN2MN2MN2MN2MN2MN5MI3MD2MN5MN2MN2MN8MN5MN5MN2MN3MDNMI17MN8MN8MN2MN8MN5MN2MN2MN2MN5MN2MIN5MD11MN2MD3MI5MN3M2N3MN5MN2MN6MDNMI5MN5MN2MN5MI3MD2MN2MIMNMD2MN2MN2MN2MN2MN2MN5MN2M3N6MN2MN2MN8MN8MN11MN5MN2MN8MN2MD3MI2MN2MN2MN8MN8MN8MN5MN2MN5MNMI2MNMD8MN2MN2MN5MD2NMI2MN2MN2MN11MN5MN20MN8MN5MN2MN2MN8MN2MN2MN8MN2MN2MN2MN2MN2MN2MN5MN5MN2MN2MN5MN2MN2MN2MN2MN5MN2MN8MN2MN2MN2MN5MN2MN5MN8MN5MN5MN11MN8MN11MN2MN5MN5MN2MN2MN5MN11MN5MN29MN8MN2MN2MN2MN8MIMNMD2MN2MN2MN2MN2MN5MI3MD5MN5MN2MN2MN5MN5MN5MN2MN2MN2MN11MN8MN5MN2MN5MN2MN2MI3MD2MN2MIMNMD11MN5MN2MN2MN8MN2MN5MN2MN2MN5MN2MI4MD4MN2MN5MN8MN2MN2MN5MN2MN3MNMN8MN2MN2MN14MN2MN17MN11MN5MN2MN2MN2MN2MN2MN2MN8MN20MN2MN5MN8MN8MN2MN2MN5MN5MN5MN5MN11MN2MN2MN2MN2MN2MN14MN14MN14MN2MN5MN2MN5M22H mismatches: 226 - insertions: 17 - deletions: 17

Occurrence

33 times in PatSeqDB

in 7 families
(1 referenced in claims)
in 33 documents

Tools

PatSeq Finder

SEQ ID NO

Length

406

Type

peptide

Locations

Undetermined

Declared organism:
Methanocaldococcus jannaschii

Determined organism:

Methanocaldococcus jannaschii DSM 2661
Methanocaldococcus jannaschii DSM 2661
Public DB hit
GI:15668680
NP_247479

Hit length
406 aa

E Value
0E0

BLAST Score
825.5 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
NP_247479

100% cov

Alignment Length
406 aa

CIGAR string
406M mismatches: 0 - insertions: 0 - deletions: 0
Methanocaldococcus sp. FS406-22
Methanocaldococcus sp. FS406-22
Public DB hit
GI:289193256
YP_003459197

Hit length
396 aa

E Value
0E0

BLAST Score
795.8 bits

Similarity

100%

Coverage

97.29%

Alignment (schematic)

SEQ ID NO 4

97.29% cov
YP_003459197

99.75% cov

Alignment Length
395 aa

CIGAR string
8H200MN84MN6MN38MN3MN23MN35M3H mismatches: 6 - insertions: 0 - deletions: 0
Methanocaldococcus vulcanius M7
Methanocaldococcus vulcanius M7
Public DB hit
GI:261403687
YP_003247911

Hit length
406 aa

E Value
0E0

BLAST Score
788.9 bits

Similarity

98.26%

Coverage

99.01%

Alignment (schematic)

SEQ ID NO 4

99.01% cov
YP_003247911

99.01% cov

Alignment Length
402 aa

CIGAR string
4HN2MN11MN127MN60MN8MN42MN16MN14MN45MN27MN23MNM2N6M6N mismatches: 20 - insertions: 0 - deletions: 0
Methanocaldococcus fervens AG86
Methanocaldococcus fervens AG86
Public DB hit
GI:256810659
YP_003128028

Hit length
400 aa

E Value
0E0

BLAST Score
788.5 bits

Similarity

98.99%

Coverage

97.78%

Alignment (schematic)

SEQ ID NO 4

97.78% cov
YP_003128028

99.25% cov

Alignment Length
397 aa
Methanotorris igneus Kol 5
Methanotorris igneus Kol 5
Public DB hit
GI:333910578
YP_004484311

Hit length
387 aa

E Value
0E0

BLAST Score
665.2 bits

Similarity

91.97%

Coverage

95.07%

Alignment (schematic)

SEQ ID NO 4

95.07% cov
YP_004484311

99.48% cov

Alignment Length
386 aa
Methanocaldococcus infernus ME
Methanocaldococcus infernus ME
Public DB hit
GI:296110019
YP_003616968

Hit length
396 aa

E Value
4.23E-180

BLAST Score
636 bits

Similarity

88.38%

Coverage

97.54%

Alignment (schematic)

SEQ ID NO 4

97.54% cov
YP_003616968

100% cov

Alignment Length
396 aa
Methanothermococcus okinawensis IH1
Methanothermococcus okinawensis IH1
Public DB hit
GI:336121622
YP_004576397

Hit length
390 aa

E Value
6.65E-174

BLAST Score
615.5 bits

Similarity

87.76%

Coverage

94.58%

Alignment (schematic)

SEQ ID NO 4

94.58% cov
YP_004576397

98.21% cov

Alignment Length
384 aa
Methanococcus maripaludis C7
Methanococcus maripaludis C7
Public DB hit
GI:150403076
YP_001330370

Hit length
386 aa

E Value
2.82E-173

BLAST Score
613.6 bits

Similarity

88.31%

Coverage

94.83%

Alignment (schematic)

SEQ ID NO 4

94.83% cov
YP_001330370

99.48% cov

Alignment Length
385 aa
Methanococcus maripaludis C5
Methanococcus maripaludis C5
Public DB hit
GI:134046548
YP_001098033

Hit length
386 aa

E Value
7.79E-173

BLAST Score
612.1 bits

Similarity

87.79%

Coverage

94.83%

Alignment (schematic)

SEQ ID NO 4

94.83% cov
YP_001098033

99.48% cov

Alignment Length
385 aa
Methanococcus maripaludis C6
Methanococcus maripaludis C6
Public DB hit
GI:159905184
YP_001548846

Hit length
386 aa

E Value
1.04E-171

BLAST Score
608.2 bits

Similarity

87.53%

Coverage

94.83%

Alignment (schematic)

SEQ ID NO 4

94.83% cov
YP_001548846

99.48% cov

Alignment Length
385 aa
Methanococcus maripaludis S2
Methanococcus maripaludis S2
Public DB hit
GI:45357716
NP_987273

Hit length
386 aa

E Value
1.46E-171

BLAST Score
607.8 bits

Similarity

87.79%

Coverage

94.83%

Alignment (schematic)

SEQ ID NO 4

94.83% cov
NP_987273

99.48% cov

Alignment Length
385 aa
Methanococcus voltae A3
Methanococcus voltae A3
Public DB hit
GI:297620091
YP_003708196

Hit length
389 aa

E Value
4.81E-169

BLAST Score
599.4 bits

Similarity

86.08%

Coverage

95.57%

Alignment (schematic)

SEQ ID NO 4

95.57% cov
YP_003708196

99.49% cov

Alignment Length
388 aa
Methanococcus vannielii SB
Methanococcus vannielii SB
Public DB hit
GI:150399901
YP_001323668

Hit length
386 aa

E Value
1.78E-167

BLAST Score
594.3 bits

Similarity

86.46%

Coverage

94.58%

Alignment (schematic)

SEQ ID NO 4

94.58% cov
YP_001323668

99.22% cov

Alignment Length
384 aa

Occurrence

33 times in PatSeqDB

in 6 families
(2 referenced in claims)
in 24 documents

Tools

PatSeq Finder

SEQ ID NO

Length

391

Type

peptide

Locations

Undetermined

Declared organism:
Methanothermobacter thermautotrophicus

Determined organism:

Methanothermobacter thermautotrophicus str. Delta H
Methanothermobacter thermautotrophicus str. Delta H
Public DB hit
GI:15679625
NP_276742

Hit length
391 aa

E Value
0E0

BLAST Score
799.7 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
NP_276742

100% cov

Alignment Length
391 aa

CIGAR string
391M mismatches: 0 - insertions: 0 - deletions: 0
Methanothermobacter marburgensis str. Marburg
Methanothermobacter marburgensis str. Marburg
Public DB hit
GI:304313990
YP_003849137

Hit length
391 aa

E Value
0E0

BLAST Score
767.3 bits

Similarity

98.98%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
YP_003849137

100% cov

Alignment Length
391 aa

CIGAR string
MN12MN3MN47MN2MN4MN8MN4MN4MN3MN68MN3MN28MN2MN4MN51M2N6MN25MN55MN3MN28MN8M mismatches: 22 - insertions: 0 - deletions: 0
Methanobacterium lacus
Methanobacterium lacus
Public DB hit
GI:325959796
YP_004291262

Hit length
391 aa

E Value
0E0

BLAST Score
639.8 bits

Similarity

88.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
YP_004291262

100% cov

Alignment Length
391 aa

CIGAR string
MNMN8MN4M2N2MN16MNMN3MN2MN4MN6MN6M2NM2N2M2NMN2MN3MN2MNMN4MN3MN8MN4MN9MNM2N3MN9MN7MN16M2NMN2M2N2MN14MN6M2N2M2NM3N13MN9M2N15M2N4MNMNM2N2MN5M6N3MN3M2NMNM2NMN6MNMN25MN3MNMN12MN3MNMN5MN4MN3MN2M2N2MNMN7M2N2MN5M3N mismatches: 91 - insertions: 0 - deletions: 0
Methanobacterium paludis
Methanobacterium paludis
Public DB hit
GI:333986801
YP_004519408

Hit length
392 aa

E Value
8.67E-178

BLAST Score
628.2 bits

Similarity

89.51%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 5

99.74% cov
YP_004519408

99.74% cov

Alignment Length
391 aa
Methanothermus fervidus DSM 2088
Methanothermus fervidus DSM 2088
Public DB hit
GI:312137185
YP_004004522

Hit length
390 aa

E Value
4.1E-171

BLAST Score
606.3 bits

Similarity

88.6%

Coverage

98.72%

Alignment (schematic)

SEQ ID NO 5

98.72% cov
YP_004004522

98.97% cov

Alignment Length
386 aa
Methanobrevibacter ruminantium M1
Methanobrevibacter ruminantium M1
Public DB hit
GI:288559643
YP_003423129

Hit length
392 aa

E Value
1.83E-166

BLAST Score
590.9 bits

Similarity

87.27%

Coverage

98.47%

Alignment (schematic)

SEQ ID NO 5

98.47% cov
YP_003423129

98.21% cov

Alignment Length
385 aa
Methanobrevibacter smithii ATCC 35061
Methanobrevibacter smithii ATCC 35061
Public DB hit
GI:148642782
YP_001273295

Hit length
390 aa

E Value
3.02E-163

BLAST Score
580.1 bits

Similarity

86.72%

Coverage

98.21%

Alignment (schematic)

SEQ ID NO 5

98.21% cov
YP_001273295

98.46% cov

Alignment Length
384 aa
Methanotorris igneus Kol 5
Methanotorris igneus Kol 5
Public DB hit
GI:333910578
YP_004484311

Hit length
387 aa

E Value
1.89E-140

BLAST Score
504.2 bits

Similarity

81.41%

Coverage

97.44%

Alignment (schematic)

SEQ ID NO 5

97.44% cov
YP_004484311

97.93% cov

Alignment Length
382 aa
Methanothermococcus okinawensis IH1
Methanothermococcus okinawensis IH1
Public DB hit
GI:336121622
YP_004576397

Hit length
390 aa

E Value
9.86E-137

BLAST Score
491.9 bits

Similarity

80.47%

Coverage

96.68%

Alignment (schematic)

SEQ ID NO 5

96.68% cov
YP_004576397

96.41% cov

Alignment Length
379 aa
Methanocaldococcus sp. FS406-22
Methanocaldococcus sp. FS406-22
Public DB hit
GI:289193256
YP_003459197

Hit length
396 aa

E Value
8.49E-135

BLAST Score
485.3 bits

Similarity

78.85%

Coverage

97.44%

Alignment (schematic)

SEQ ID NO 5

97.44% cov
YP_003459197

95.96% cov

Alignment Length
383 aa
Methanocaldococcus fervens AG86
Methanocaldococcus fervens AG86
Public DB hit
GI:256810659
YP_003128028

Hit length
400 aa

E Value
9.78E-135

BLAST Score
485.3 bits

Similarity

78.85%

Coverage

97.44%

Alignment (schematic)

SEQ ID NO 5

97.44% cov
YP_003128028

95% cov

Alignment Length
383 aa
Methanocaldococcus jannaschii DSM 2661
Methanocaldococcus jannaschii DSM 2661
Public DB hit
GI:15668680
NP_247479

Hit length
406 aa

E Value
2.8E-134

BLAST Score
483.8 bits

Similarity

79.37%

Coverage

97.44%

Alignment (schematic)

SEQ ID NO 5

97.44% cov
NP_247479

93.6% cov

Alignment Length
383 aa
Methanocaldococcus vulcanius M7
Methanocaldococcus vulcanius M7
Public DB hit
GI:261403687
YP_003247911

Hit length
406 aa

E Value
3.33E-134

BLAST Score
483.4 bits

Similarity

79.37%

Coverage

97.44%

Alignment (schematic)

SEQ ID NO 5

97.44% cov
YP_003247911

93.6% cov

Alignment Length
383 aa

Occurrence

36 times in PatSeqDB

in 7 families
(2 referenced in claims)
in 29 documents

Tools

PatSeq Finder

SEQ ID NO

Length

386

Type

peptide

Locations

Undetermined

Declared organism:
Methanococcus maripaludis

Determined organism:

Methanococcus maripaludis S2
Methanococcus maripaludis S2
Public DB hit
GI:45357716
NP_987273

Hit length
386 aa

E Value
0E0

BLAST Score
789.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
NP_987273

100% cov

Alignment Length
386 aa

CIGAR string
386M mismatches: 0 - insertions: 0 - deletions: 0
Methanococcus maripaludis C5
Methanococcus maripaludis C5
Public DB hit
GI:134046548
YP_001098033

Hit length
386 aa

E Value
0E0

BLAST Score
762.3 bits

Similarity

98.19%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
YP_001098033

100% cov

Alignment Length
386 aa

CIGAR string
13MN22M2N72MN11MN33MN2MN12MN24M2N51MN31MN11MN57MN14MN12M2N4M mismatches: 17 - insertions: 0 - deletions: 0
Methanococcus maripaludis C6
Methanococcus maripaludis C6
Public DB hit
GI:159905184
YP_001548846

Hit length
386 aa

E Value
0E0

BLAST Score
758.1 bits

Similarity

97.93%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
YP_001548846

100% cov

Alignment Length
386 aa

CIGAR string
13MN22M2N4MN67MN11MN33MN2MN38MN51MN11MN8MN10MN11MN57MN14MN4MN7M2N4M mismatches: 19 - insertions: 0 - deletions: 0
Methanococcus maripaludis C7
Methanococcus maripaludis C7
Public DB hit
GI:150403076
YP_001330370

Hit length
386 aa

E Value
0E0

BLAST Score
756.5 bits

Similarity

97.67%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
YP_001330370

100% cov

Alignment Length
386 aa
Methanococcus vannielii SB
Methanococcus vannielii SB
Public DB hit
GI:150399901
YP_001323668

Hit length
386 aa

E Value
0E0

BLAST Score
705.3 bits

Similarity

94.03%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 6

99.74% cov
YP_001323668

99.74% cov

Alignment Length
385 aa
Methanotorris igneus Kol 5
Methanotorris igneus Kol 5
Public DB hit
GI:333910578
YP_004484311

Hit length
387 aa

E Value
0E0

BLAST Score
645.6 bits

Similarity

90.93%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
YP_004484311

99.74% cov

Alignment Length
386 aa
Methanococcus voltae A3
Methanococcus voltae A3
Public DB hit
GI:297620091
YP_003708196

Hit length
389 aa

E Value
0E0

BLAST Score
643.7 bits

Similarity

89.35%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 6

99.74% cov
YP_003708196

98.97% cov

Alignment Length
385 aa
Methanothermococcus okinawensis IH1
Methanothermococcus okinawensis IH1
Public DB hit
GI:336121622
YP_004576397

Hit length
390 aa

E Value
7.12E-180

BLAST Score
635.2 bits

Similarity

89.09%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 6

99.74% cov
YP_004576397

98.72% cov

Alignment Length
385 aa
Methanocaldococcus jannaschii DSM 2661
Methanocaldococcus jannaschii DSM 2661
Public DB hit
GI:15668680
NP_247479

Hit length
406 aa

E Value
1.35E-171

BLAST Score
607.8 bits

Similarity

87.79%

Coverage

99.48%

Alignment (schematic)

SEQ ID NO 6

99.48% cov
NP_247479

94.83% cov

Alignment Length
385 aa
Methanocaldococcus sp. FS406-22
Methanocaldococcus sp. FS406-22
Public DB hit
GI:289193256
YP_003459197

Hit length
396 aa

E Value
1.8E-171

BLAST Score
607.4 bits

Similarity

87.53%

Coverage

99.48%

Alignment (schematic)

SEQ ID NO 6

99.48% cov
YP_003459197

97.22% cov

Alignment Length
385 aa
Methanococcus aeolicus Nankai-3
Methanococcus aeolicus Nankai-3
Public DB hit
GI:150401418
YP_001325184

Hit length
387 aa

E Value
3.26E-171

BLAST Score
606.3 bits

Similarity

86.53%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
YP_001325184

99.74% cov

Alignment Length
386 aa
Methanocaldococcus vulcanius M7
Methanocaldococcus vulcanius M7
Public DB hit
GI:261403687
YP_003247911

Hit length
406 aa

E Value
4.99E-170

BLAST Score
602.4 bits

Similarity

87.53%

Coverage

99.48%

Alignment (schematic)

SEQ ID NO 6

99.48% cov
YP_003247911

94.83% cov

Alignment Length
385 aa
Methanocaldococcus fervens AG86
Methanocaldococcus fervens AG86
Public DB hit
GI:256810659
YP_003128028

Hit length
400 aa

E Value
9.02E-170

BLAST Score
601.7 bits

Similarity

87.27%

Coverage

99.48%

Alignment (schematic)

SEQ ID NO 6

99.48% cov
YP_003128028

96.25% cov

Alignment Length
385 aa

Occurrence

43 times in PatSeqDB

in 7 families
(2 referenced in claims)
in 29 documents

Tools

PatSeq Finder

SEQ ID NO

Length

386

Type

peptide

Locations

Undetermined

Declared organism:
Methanococcus maripaludis

Determined organism:

Methanococcus maripaludis C5
Methanococcus maripaludis C5
Public DB hit
GI:134046548
YP_001098033

Hit length
386 aa

E Value
0E0

BLAST Score
792.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
YP_001098033

100% cov

Alignment Length
386 aa

CIGAR string
386M mismatches: 0 - insertions: 0 - deletions: 0
Methanococcus maripaludis C6
Methanococcus maripaludis C6
Public DB hit
GI:159905184
YP_001548846

Hit length
386 aa

E Value
0E0

BLAST Score
779.2 bits

Similarity

99.48%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
YP_001548846

100% cov

Alignment Length
386 aa

CIGAR string
42MN79MN33MN15MN24MN64MN8MN100MN13M mismatches: 8 - insertions: 0 - deletions: 0
Methanococcus maripaludis C7
Methanococcus maripaludis C7
Public DB hit
GI:150403076
YP_001330370

Hit length
386 aa

E Value
0E0

BLAST Score
766.1 bits

Similarity

98.7%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
YP_001330370

100% cov

Alignment Length
386 aa

CIGAR string
13MN55MN86MN2MN12MN14MN2MN6M2N25MN34MN11MN5MN71MN2MN33M mismatches: 15 - insertions: 0 - deletions: 0
Methanococcus maripaludis X1
Methanococcus maripaludis X1
Public DB hit
GI:340623335
YP_004741788

Hit length
386 aa

E Value
0E0

BLAST Score
762.3 bits

Similarity

98.19%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
YP_004741788

100% cov

Alignment Length
386 aa
Methanococcus maripaludis S2
Methanococcus maripaludis S2
Public DB hit
GI:45357716
NP_987273

Hit length
386 aa

E Value
0E0

BLAST Score
762.3 bits

Similarity

98.19%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
NP_987273

100% cov

Alignment Length
386 aa
Methanococcus vannielii SB
Methanococcus vannielii SB
Public DB hit
GI:150399901
YP_001323668

Hit length
386 aa

E Value
0E0

BLAST Score
698 bits

Similarity

94.29%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 7

99.74% cov
YP_001323668

99.74% cov

Alignment Length
385 aa
Methanotorris igneus Kol 5
Methanotorris igneus Kol 5
Public DB hit
GI:333910578
YP_004484311

Hit length
387 aa

E Value
0E0

BLAST Score
649 bits

Similarity

91.19%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
YP_004484311

99.74% cov

Alignment Length
386 aa
Methanococcus voltae A3
Methanococcus voltae A3
Public DB hit
GI:297620091
YP_003708196

Hit length
389 aa

E Value
0E0

BLAST Score
646 bits

Similarity

89.09%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 7

99.74% cov
YP_003708196

98.97% cov

Alignment Length
385 aa
Methanothermococcus okinawensis IH1
Methanothermococcus okinawensis IH1
Public DB hit
GI:336121622
YP_004576397

Hit length
390 aa

E Value
0E0

BLAST Score
639 bits

Similarity

89.35%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 7

99.74% cov
YP_004576397

98.72% cov

Alignment Length
385 aa
Methanotorris formicicus Mc-S-70
Methanotorris formicicus Mc-S-70
Public DB hit
GI:374636641
ZP_09708200

Hit length
388 aa

E Value
9.73E-177

BLAST Score
625.2 bits

Similarity

89.41%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ZP_09708200

99.74% cov

Alignment Length
387 aa
Methanococcus aeolicus Nankai-3
Methanococcus aeolicus Nankai-3
Public DB hit
GI:150401418
YP_001325184

Hit length
387 aa

E Value
1.46E-173

BLAST Score
614.8 bits

Similarity

87.31%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
YP_001325184

99.74% cov

Alignment Length
386 aa
Methanocaldococcus jannaschii DSM 2661
Methanocaldococcus jannaschii DSM 2661
Public DB hit
GI:15668680
NP_247479

Hit length
406 aa

E Value
9.42E-173

BLAST Score
612.1 bits

Similarity

87.79%

Coverage

99.48%

Alignment (schematic)

SEQ ID NO 7

99.48% cov
NP_247479

94.83% cov

Alignment Length
385 aa
Methanocaldococcus sp. FS406-22
Methanocaldococcus sp. FS406-22
Public DB hit
GI:289193256
YP_003459197

Hit length
396 aa

E Value
9.34E-172

BLAST Score
608.6 bits

Similarity

87.53%

Coverage

99.48%

Alignment (schematic)

SEQ ID NO 7

99.48% cov
YP_003459197

97.22% cov

Alignment Length
385 aa

Occurrence

14 times in PatSeqDB

in 3 families
in 14 documents

Tools

PatSeq Finder

SEQ ID NO

Length

386

Type

peptide

Locations

Undetermined

Declared organism:
Methanococcus maripaludis

Determined organism:

Methanococcus maripaludis C7
Methanococcus maripaludis C7
Public DB hit
GI:150403076
YP_001330370

Hit length
386 aa

E Value
0E0

BLAST Score
793.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
YP_001330370

100% cov

Alignment Length
386 aa

CIGAR string
386M mismatches: 0 - insertions: 0 - deletions: 0
Methanococcus maripaludis C5
Methanococcus maripaludis C5
Public DB hit
GI:134046548
YP_001098033

Hit length
386 aa

E Value
0E0

BLAST Score
766.1 bits

Similarity

98.7%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
YP_001098033

100% cov

Alignment Length
386 aa

CIGAR string
13MN55MN86MN2MN12MN14MN2MN6M2N25MN34MN11MN5MN71MN2MN33M mismatches: 15 - insertions: 0 - deletions: 0
Methanococcus maripaludis C6
Methanococcus maripaludis C6
Public DB hit
GI:159905184
YP_001548846

Hit length
386 aa

E Value
0E0

BLAST Score
765.4 bits

Similarity

98.7%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
YP_001548846

100% cov

Alignment Length
386 aa

CIGAR string
13MN28MN26MN52MN36MN27MN2MN7MN25MN34MN2MN14MN71MN2MN19MN13M mismatches: 15 - insertions: 0 - deletions: 0
Methanococcus maripaludis S2
Methanococcus maripaludis S2
Public DB hit
GI:45357716
NP_987273

Hit length
386 aa

E Value
0E0

BLAST Score
756.5 bits

Similarity

97.67%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
NP_987273

100% cov

Alignment Length
386 aa
Methanococcus maripaludis X1
Methanococcus maripaludis X1
Public DB hit
GI:340623335
YP_004741788

Hit length
386 aa

E Value
0E0

BLAST Score
756.1 bits

Similarity

97.67%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
YP_004741788

100% cov

Alignment Length
386 aa
Methanococcus vannielii SB
Methanococcus vannielii SB
Public DB hit
GI:150399901
YP_001323668

Hit length
386 aa

E Value
0E0

BLAST Score
708 bits

Similarity

94.29%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 8

99.74% cov
YP_001323668

99.74% cov

Alignment Length
385 aa
Methanotorris igneus Kol 5
Methanotorris igneus Kol 5
Public DB hit
GI:333910578
YP_004484311

Hit length
387 aa

E Value
0E0

BLAST Score
653.7 bits

Similarity

91.97%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
YP_004484311

99.74% cov

Alignment Length
386 aa
Methanococcus voltae A3
Methanococcus voltae A3
Public DB hit
GI:297620091
YP_003708196

Hit length
389 aa

E Value
0E0

BLAST Score
649.4 bits

Similarity

90.13%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 8

99.74% cov
YP_003708196

98.97% cov

Alignment Length
385 aa
Methanothermococcus okinawensis IH1
Methanothermococcus okinawensis IH1
Public DB hit
GI:336121622
YP_004576397

Hit length
390 aa

E Value
0E0

BLAST Score
643.3 bits

Similarity

89.87%

Coverage

99.74%

Alignment (schematic)

SEQ ID NO 8

99.74% cov
YP_004576397

98.72% cov

Alignment Length
385 aa
Methanotorris formicicus Mc-S-70
Methanotorris formicicus Mc-S-70
Public DB hit
GI:374636641
ZP_09708200

Hit length
388 aa

E Value
4.75E-177

BLAST Score
626.3 bits

Similarity

89.92%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ZP_09708200

99.74% cov

Alignment Length
387 aa
Methanococcus aeolicus Nankai-3
Methanococcus aeolicus Nankai-3
Public DB hit
GI:150401418
YP_001325184

Hit length
387 aa

E Value
3.05E-173

BLAST Score
613.6 bits

Similarity

86.79%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
YP_001325184

99.74% cov

Alignment Length
386 aa
Methanocaldococcus jannaschii DSM 2661
Methanocaldococcus jannaschii DSM 2661
Public DB hit
GI:15668680
NP_247479

Hit length
406 aa

E Value
3.4E-173

BLAST Score
613.6 bits

Similarity

88.31%

Coverage

99.48%

Alignment (schematic)

SEQ ID NO 8

99.48% cov
NP_247479

94.83% cov

Alignment Length
385 aa
Methanocaldococcus sp. FS406-22
Methanocaldococcus sp. FS406-22
Public DB hit
GI:289193256
YP_003459197

Hit length
396 aa

E Value
7.58E-173

BLAST Score
612.5 bits

Similarity

88.31%

Coverage

99.48%

Alignment (schematic)

SEQ ID NO 8

99.48% cov
YP_003459197

97.22% cov

Alignment Length
385 aa

Occurrence

9 times in PatSeqDB

in 2 families
in 9 documents

Tools

PatSeq Finder

SEQ ID NO

Length

279

Type

peptide

Locations

Undetermined

Declared organism:
Methanosphaera stadtmanae

Determined organism:

Methanosphaera stadtmanae DSM 3091
Methanosphaera stadtmanae DSM 3091
Public DB hit
GI:84489893
YP_448125

Hit length
279 aa

E Value
2.61E-160

BLAST Score
569.7 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
YP_448125

100% cov

Alignment Length
279 aa

CIGAR string
279M mismatches: 0 - insertions: 0 - deletions: 0
Methanobrevibacter smithii ATCC 35061
Methanobrevibacter smithii ATCC 35061
Public DB hit
GI:148642782
YP_001273295

Hit length
390 aa

E Value
2.35E-95

BLAST Score
354 bits

Similarity

77.06%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
YP_001273295

71.54% cov

Alignment Length
279 aa

CIGAR string
2MN2MN3MNM4NM6N2MN2MNMN17MNM2NM3NM2NM3N4MN7MNMNM4N4M2N2M5N10MN2MN3MNM3N2M2N19MN8MN7M2NMN3MN4MNM2NM4NM2N16M4N2MN3MN3M2NMN3MN7M2N2M2N2M6NMNM2NM2N2M2N2M2N2MNM2NM4NMN2M4NMNMN mismatches: 107 - insertions: 0 - deletions: 0
Methanobrevibacter ruminantium M1
Methanobrevibacter ruminantium M1
Public DB hit
GI:288559643
YP_003423129

Hit length
392 aa

E Value
1.28E-91

BLAST Score
341.7 bits

Similarity

75.72%

Coverage

98.92%

Alignment (schematic)

SEQ ID NO 9

98.92% cov
YP_003423129

70.41% cov

Alignment Length
276 aa

CIGAR string
2MN2MN3MNM4NM5N3M2NMNMN17MNM2NM3NM2NM3N4MN5MNMNMNM5NMNM3NM5N2MN7MN2MN3MN2M2NM2NMN19MN4MN2MN7M2NMN3MN2M4NM2NM3NM2N2MN13M4N2MN3M2N2M2NMN3MN7M2N2M2N3M4N2M3N2MN3M2N2M2N2MNM2NM2NMNM2NM5N3H mismatches: 113 - insertions: 0 - deletions: 0
Methanothermobacter marburgensis str. Marburg
Methanothermobacter marburgensis str. Marburg
Public DB hit
GI:304313990
YP_003849137

Hit length
391 aa

E Value
1.18E-90

BLAST Score
338.6 bits

Similarity

77.45%

Coverage

98.57%

Alignment (schematic)

SEQ ID NO 9

98.57% cov
YP_003849137

70.33% cov

Alignment Length
275 aa
Methanothermobacter thermautotrophicus str. Delta H
Methanothermobacter thermautotrophicus str. Delta H
Public DB hit
GI:15679625
NP_276742

Hit length
391 aa

E Value
6.5E-90

BLAST Score
335.9 bits

Similarity

77.09%

Coverage

98.57%

Alignment (schematic)

SEQ ID NO 9

98.57% cov
NP_276742

70.33% cov

Alignment Length
275 aa
Methanothermus fervidus DSM 2088
Methanothermus fervidus DSM 2088
Public DB hit
GI:312137185
YP_004004522

Hit length
390 aa

E Value
1.49E-89

BLAST Score
334.7 bits

Similarity

77.45%

Coverage

98.57%

Alignment (schematic)

SEQ ID NO 9

98.57% cov
YP_004004522

70.51% cov

Alignment Length
275 aa
Methanobacterium paludis
Methanobacterium paludis
Public DB hit
GI:333986801
YP_004519408

Hit length
392 aa

E Value
2.64E-88

BLAST Score
330.5 bits

Similarity

75.72%

Coverage

98.57%

Alignment (schematic)

SEQ ID NO 9

98.57% cov
YP_004519408

70.41% cov

Alignment Length
276 aa

Occurrence

14 times in PatSeqDB

in 2 families
in 9 documents

Tools

PatSeq Finder

SEQ ID NO

Length

397

Type

peptide

Locations

Undetermined

Declared organism:
Methanopyrus kandleri

Determined organism:

Methanopyrus kandleri AV19
Methanopyrus kandleri AV19
Public DB hit
GI:20094645
NP_614492
1 of 2 hits reported for Methanopyrus kandleri AV19.

Hit length
397 aa

E Value
0E0

BLAST Score
796.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
NP_614492

100% cov

Alignment Length
397 aa

CIGAR string
397M mismatches: 0 - insertions: 0 - deletions: 0
Methanothermobacter marburgensis str. Marburg
Methanothermobacter marburgensis str. Marburg
Public DB hit
GI:304313990
YP_003849137

Hit length
391 aa

E Value
4.82E-125

BLAST Score
453 bits

Similarity

76.7%

Coverage

96.22%

Alignment (schematic)

SEQ ID NO 10

96.22% cov
YP_003849137

97.19% cov

Alignment Length
382 aa

CIGAR string
2H2M3N2M2DM3N2M4N14M4NMN5M2N5M2N3MN6M2NM3NM2N2MN8MNMN2M3NMNMNMN10MN3MN7M3N3MNM7N8M2N6MN3M3N2M3NM2N2M2N6M2N4M3NM2NM3NM3NM6NM2N3MN5M2N2MNM3N2M2NMN13M2N3MN4M3NMN2MN3M2N2MN4MNM7N2MN2M2N2MNMN9MN2MN3MN4M2NM3NM2N8MNM2N2MN5MNMNM3NM9NM10NM5N3MNM13H mismatches: 161 - insertions: 0 - deletions: 2
Methanothermus fervidus DSM 2088
Methanothermus fervidus DSM 2088
Public DB hit
GI:312137185
YP_004004522

Hit length
390 aa

E Value
1.32E-121

BLAST Score
441.8 bits

Similarity

75.13%

Coverage

96.22%

Alignment (schematic)

SEQ ID NO 10

96.22% cov
YP_004004522

97.44% cov

Alignment Length
382 aa

Occurrence

36 times in PatSeqDB

in 7 families
(2 referenced in claims)
in 29 documents

Tools

PatSeq Finder

Search for Biological Sequences disclosed in Patents

291 sequences found in this patent (in total)

Displaying 1 - 10 of 291 sequences

Vibrio fluvialis

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Paracoccus denitrificans PD1222

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Ketogulonicigenium vulgare Y25

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Vibrio fluvialis

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Paracoccus denitrificans PD1222

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Rhodobacter sphaeroides KD131

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Rhodobacter sphaeroides ATCC 17025

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Rhodobacter sphaeroides ATCC 17029

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)