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Search for Biological Sequences disclosed in Patents

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Data obtained from: EPO Sequence Listings
308 sequences found in this patent (in total)

Displaying 1 - 10 of 308 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
918
Type
DNA
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:158967071
      CP000033
    • Hit length
      1,993,560 bp
    • E Value
      0E0
    • BLAST Score
      1,696.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000033
      0.05% cov
    • Alignment Length
      918 bp
    • CIGAR string
      918M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus helveticus H10

    Lactobacillus helveticus H10

    • Public DB hit
      GI:323465557
      CP002429
    • Hit length
      2,145,899 bp
    • E Value
      4.68E-152
    • BLAST Score
      547.7 bits
    • Similarity
      78.12%
    • Coverage
      99.56%
    • Alignment (schematic)

      SEQ ID NO 1
      99.56% cov
      CP002429
      0.04% cov
    • Alignment Length
      946 bp
    • CIGAR string
      4MI6MI6MD4MI2MI2MI2M2IN6M2D3MN10MN2MNMNMDMI4MNMN2MD2MN3MIN4MNM2N2MN6MNMNMN6MN2MN8MDMIMN3MN2M2N6MIMNMDMNMI3MD4MN2MN2MNMD2MIMN23MN5M2NMNM2N16MNMI2MD20MN2MN8MN2MN15MIMDN2MN5MD3MI3MN3MNMN13MN2MN2MN2MN8MN32MNIMND8MN2MN5MN8MD2MI4M2NMNMN5MD2MNIMIMD11MN5MNIMD4MIMD9M2N8MNMN2MN5MN2MN8MN2M2NMN2M4N6M2N3MN6MD3M2N2MI4MNMN2MN2MN12M2NMN4MN3MDM2NI4MN2M3ND2MIMIMI2MI4MNMN5M3N2MN14MN2MN8MNM2N4M2N2MN5MN20MN6MN5MNMN5M4N2MN14MN2MN2MN4MI2MD4MN5MN6MNMN23MN2MN6MN16MN5MD3MI5MNI3MDMN2M2N4M3NMNMN5M2NMN2MN11MN5MN5MNM2N9MN9MI2MD7MN20M4H mismatches: 150 - insertions: 32 - deletions: 25
  • Lactobacillus gasseri ATCC 33323

    Lactobacillus gasseri ATCC 33323

    • Public DB hit
      GI:116094265
      CP000413
    • Hit length
      1,894,360 bp
    • E Value
      2.84E-144
    • BLAST Score
      521.9 bits
    • Similarity
      77.8%
    • Coverage
      96.73%
    • Alignment (schematic)

      SEQ ID NO 1
      96.73% cov
      CP000413
      0.05% cov
    • Alignment Length
      910 bp
    • CIGAR string
      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 mismatches: 158 - insertions: 22 - deletions: 22
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
306
Type
peptide
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus ATCC 4796

    Lactobacillus acidophilus ATCC 4796

    • Public DB hit
      GI:227902797
      ZP_04020602
    • Hit length
      306 aa
    • E Value
      1.61E-176
    • BLAST Score
      623.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_04020602
      100% cov
    • Alignment Length
      306 aa
    • CIGAR string
      306M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:58338026
      YP_194611
    • Hit length
      298 aa
    • E Value
      4.73E-171
    • BLAST Score
      605.5 bits
    • Similarity
      100%
    • Coverage
      97.39%
    • Alignment (schematic)

      SEQ ID NO 2
      97.39% cov
      YP_194611
      100% cov
    • Alignment Length
      298 aa
    • CIGAR string
      8H298M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus ultunensis DSM 16047

    Lactobacillus ultunensis DSM 16047

    • Public DB hit
      GI:227894044
      ZP_04011849
    • Hit length
      294 aa
    • E Value
      1.86E-133
    • BLAST Score
      480.3 bits
    • Similarity
      90.82%
    • Coverage
      96.08%
    • Alignment (schematic)

      SEQ ID NO 2
      96.08% cov
      ZP_04011849
      99.32% cov
    • Alignment Length
      294 aa
    • CIGAR string
      12HMN4M5NM2NM2N2MN6MNDM3N2MDMN4MN16MNMN17MN3MNM4N20MN8MN2MN4MN6MNMN3MN11MNMN2MN3M2N2MN5MN2MNMN3M3NMN2MN13MN3MN3MN5MN2MN9MNM3N2MN11MN6MN6MN19MN2MN9MNM mismatches: 62 - insertions: 0 - deletions: 2
  • Lactobacillus crispatus JV-V01

    Lactobacillus crispatus JV-V01

    • Public DB hit
      GI:227879225
      ZP_03997097
    • Hit length
      309 aa
    • E Value
      2.52E-132
    • BLAST Score
      476.9 bits
    • Similarity
      86.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_03997097
      100% cov
    • Alignment Length
      309 aa
  • Lactobacillus crispatus MV-1A-US

    Lactobacillus crispatus MV-1A-US

    • Public DB hit
      GI:256849389
      ZP_05554821
    • Hit length
      298 aa
    • E Value
      7.89E-132
    • BLAST Score
      474.9 bits
    • Similarity
      87.92%
    • Coverage
      97.39%
    • Alignment (schematic)

      SEQ ID NO 2
      97.39% cov
      ZP_05554821
      100% cov
    • Alignment Length
      298 aa
  • Lactobacillus crispatus ST1

    Lactobacillus crispatus ST1

    • Public DB hit
      GI:295693665
      YP_003602275
    • Hit length
      298 aa
    • E Value
      1.05E-131
    • BLAST Score
      474.6 bits
    • Similarity
      87.92%
    • Coverage
      97.39%
    • Alignment (schematic)

      SEQ ID NO 2
      97.39% cov
      YP_003602275
      100% cov
    • Alignment Length
      298 aa
  • Lactobacillus crispatus 125-2-CHN

    Lactobacillus crispatus 125-2-CHN

    • Public DB hit
      GI:256844048
      ZP_05549535
    • Hit length
      298 aa
    • E Value
      2.5E-131
    • BLAST Score
      473.4 bits
    • Similarity
      87.58%
    • Coverage
      97.39%
    • Alignment (schematic)

      SEQ ID NO 2
      97.39% cov
      ZP_05549535
      100% cov
    • Alignment Length
      298 aa
  • Lactobacillus crispatus 214-1

    Lactobacillus crispatus 214-1

    • Public DB hit
      GI:293382085
      ZP_06628036
    • Hit length
      298 aa
    • E Value
      3.46E-131
    • BLAST Score
      473 bits
    • Similarity
      87.58%
    • Coverage
      97.39%
    • Alignment (schematic)

      SEQ ID NO 2
      97.39% cov
      ZP_06628036
      100% cov
    • Alignment Length
      298 aa
  • Lactobacillus helveticus H10

    Lactobacillus helveticus H10

    • Public DB hit
      GI:323467268
      ADX70955
    • Hit length
      305 aa
    • E Value
      1.12E-130
    • BLAST Score
      471.1 bits
    • Similarity
      87.17%
    • Coverage
      99.02%
    • Alignment (schematic)

      SEQ ID NO 2
      99.02% cov
      ADX70955
      99.67% cov
    • Alignment Length
      304 aa
  • Lactobacillus kefiranofaciens ZW3

    Lactobacillus kefiranofaciens ZW3

    • Public DB hit
      GI:336054845
      YP_004563132
    • Hit length
      299 aa
    • E Value
      1.77E-130
    • BLAST Score
      470.7 bits
    • Similarity
      89.97%
    • Coverage
      97.39%
    • Alignment (schematic)

      SEQ ID NO 2
      97.39% cov
      YP_004563132
      100% cov
    • Alignment Length
      299 aa
  • Lactobacillus helveticus DSM 20075

    Lactobacillus helveticus DSM 20075

    • Public DB hit
      GI:260103029
      ZP_05753266
    • Hit length
      305 aa
    • E Value
      9.98E-129
    • BLAST Score
      464.9 bits
    • Similarity
      87.33%
    • Coverage
      97.71%
    • Alignment (schematic)

      SEQ ID NO 2
      97.71% cov
      ZP_05753266
      98.36% cov
    • Alignment Length
      300 aa
  • Lactobacillus gasseri 224-1

    Lactobacillus gasseri 224-1

    • Public DB hit
      GI:282852909
      ZP_06262250
    • Hit length
      299 aa
    • E Value
      1.06E-127
    • BLAST Score
      461.5 bits
    • Similarity
      87.16%
    • Coverage
      96.73%
    • Alignment (schematic)

      SEQ ID NO 2
      96.73% cov
      ZP_06262250
      99% cov
    • Alignment Length
      296 aa
  • Lactobacillus gasseri ATCC 33323

    Lactobacillus gasseri ATCC 33323

    • Public DB hit
      GI:116630276
      YP_815486
    • Hit length
      308 aa
    • E Value
      1.47E-127
    • BLAST Score
      461.1 bits
    • Similarity
      86.91%
    • Coverage
      97.39%
    • Alignment (schematic)

      SEQ ID NO 2
      97.39% cov
      YP_815486
      96.75% cov
    • Alignment Length
      298 aa
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
573
Type
DNA
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:158967071
      CP000033
    • Hit length
      1,993,560 bp
    • E Value
      0E0
    • BLAST Score
      1,059.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000033
      0.03% cov
    • Alignment Length
      573 bp
    • CIGAR string
      573M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus kefiranofaciens ZW3

    Lactobacillus kefiranofaciens ZW3

    • Public DB hit
      GI:333956887
      CP002764
    • Hit length
      2,113,023 bp
    • E Value
      6.64E-99
    • BLAST Score
      370.5 bits
    • Similarity
      79.12%
    • Coverage
      96.68%
    • Alignment (schematic)

      SEQ ID NO 3
      96.68% cov
      CP002764
      0.03% cov
    • Alignment Length
      565 bp
    • CIGAR string
      15H12MNMN5MN3MI2MD3N2MN12MNMN2MN9M2N6MN8MN4MNMNMN5MN2MN5MN5MN5MN11MN8MN2MN2MN2MN5MN14MN5MN14MD3MI2MN6M3N2MN2MNMI2MDM2NMN3MD2MN3MIMN3MN4MDMNMN2MI2MN9MNMN2M2N7MN6MNMN5MN2M2N4MN5MN5MN2MN2MN5MN3MNMN5MN5MN2MN2MN5MN2MN2MN2MN11MN5MN5MN8MN5MN29MN3MNIMD5MN5MN5MN2MN3MI3MN7MD5MDMIMN3MIMD9M2NIMD2MN2MN5MN2MN5MN5MN3MNMN8MI2MND2MN11M4H mismatches: 96 - insertions: 11 - deletions: 11
  • Lactobacillus johnsonii DPC 6026

    Lactobacillus johnsonii DPC 6026

    • Public DB hit
      GI:329666391
      CP002464
    • Hit length
      1,966,342 bp
    • E Value
      9.09E-58
    • BLAST Score
      233.8 bits
    • Similarity
      75.18%
    • Coverage
      94.76%
    • Alignment (schematic)

      SEQ ID NO 3
      94.76% cov
      CP002464
      0.03% cov
    • Alignment Length
      560 bp
    • CIGAR string
      30H5MN3MNMN5MDN2MIN5MNMN8MN4MIM2I2MDMDMD8MN7MNMN2MINMD2M2N3M2N2MN5MN5MN8MN8MN2MN2MN32MDM3N4MI6MND2MI7M3NIMD5MN2MNMNDMI5M2NMD3MI2MNM2N5MNDMN2MNI5MIM3NDMNMN2MN8MI3MN2MD2MN8M2N4MN5MN6M3N2MN11MN2M2ND2MIMN6MD5MI18M2N3MN5MN3MI2MD14MN2MN5MN2MN2MN5MN12MN9M2NM3N2MNMN2MN3MN10MN2MN6MNMN5MN2MN2MN7M2N2M2NM2N4MI3MND4MN2M2NMN9M3N2MN3MN4MN6M mismatches: 105 - insertions: 17 - deletions: 17
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
191
Type
peptide
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus ATCC 4796

    Lactobacillus acidophilus ATCC 4796

    • Public DB hit
      GI:227902999
      ZP_04020804
    • Hit length
      191 aa
    • E Value
      9.03E-107
    • BLAST Score
      390.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_04020804
      100% cov
    • Alignment Length
      191 aa
    • CIGAR string
      191M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:58336444
      YP_193029
    • Hit length
      186 aa
    • E Value
      1.25E-103
    • BLAST Score
      379.8 bits
    • Similarity
      100%
    • Coverage
      97.38%
    • Alignment (schematic)

      SEQ ID NO 4
      97.38% cov
      YP_193029
      100% cov
    • Alignment Length
      186 aa
    • CIGAR string
      5H186M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus helveticus DPC 4571

    Lactobacillus helveticus DPC 4571

    • Public DB hit
      GI:161506717
      YP_001576667
    • Hit length
      186 aa
    • E Value
      8.43E-85
    • BLAST Score
      317.4 bits
    • Similarity
      95.16%
    • Coverage
      97.38%
    • Alignment (schematic)

      SEQ ID NO 4
      97.38% cov
      YP_001576667
      100% cov
    • Alignment Length
      186 aa
    • CIGAR string
      5H4MN9MNMN3M2N5MN7MN26MN5MNM2N5MNM2N4MN10MN49MN21M2N5MN3MN6M mismatches: 21 - insertions: 0 - deletions: 0
  • Lactobacillus crispatus CTV-05

    Lactobacillus crispatus CTV-05

    • Public DB hit
      GI:312977006
      ZP_07788755
    • Hit length
      186 aa
    • E Value
      1.35E-83
    • BLAST Score
      313.5 bits
    • Similarity
      95.7%
    • Coverage
      97.38%
    • Alignment (schematic)

      SEQ ID NO 4
      97.38% cov
      ZP_07788755
      100% cov
    • Alignment Length
      186 aa
  • Lactobacillus crispatus JV-V01

    Lactobacillus crispatus JV-V01

    • Public DB hit
      GI:227879023
      ZP_03996917
    • Hit length
      186 aa
    • E Value
      1.71E-82
    • BLAST Score
      309.7 bits
    • Similarity
      95.16%
    • Coverage
      97.38%
    • Alignment (schematic)

      SEQ ID NO 4
      97.38% cov
      ZP_03996917
      100% cov
    • Alignment Length
      186 aa
  • Lactobacillus crispatus ST1

    Lactobacillus crispatus ST1

    • Public DB hit
      GI:295691948
      YP_003600558
    • Hit length
      186 aa
    • E Value
      1.73E-82
    • BLAST Score
      309.7 bits
    • Similarity
      94.62%
    • Coverage
      97.38%
    • Alignment (schematic)

      SEQ ID NO 4
      97.38% cov
      YP_003600558
      100% cov
    • Alignment Length
      186 aa
  • Lactobacillus kefiranofaciens ZW3

    Lactobacillus kefiranofaciens ZW3

    • Public DB hit
      GI:336055171
      YP_004563458
    • Hit length
      186 aa
    • E Value
      2.18E-82
    • BLAST Score
      309.3 bits
    • Similarity
      95.76%
    • Coverage
      86.39%
    • Alignment (schematic)

      SEQ ID NO 4
      86.39% cov
      YP_004563458
      88.71% cov
    • Alignment Length
      165 aa
  • Lactobacillus ultunensis DSM 16047

    Lactobacillus ultunensis DSM 16047

    • Public DB hit
      GI:227894285
      ZP_04012090
    • Hit length
      186 aa
    • E Value
      2.69E-78
    • BLAST Score
      295.8 bits
    • Similarity
      90.32%
    • Coverage
      97.38%
    • Alignment (schematic)

      SEQ ID NO 4
      97.38% cov
      ZP_04012090
      100% cov
    • Alignment Length
      186 aa
  • Lactobacillus amylovorus GRL 1112

    Lactobacillus amylovorus GRL 1112

    • Public DB hit
      GI:315037343
      YP_004030911
    • Hit length
      186 aa
    • E Value
      8.52E-78
    • BLAST Score
      294.3 bits
    • Similarity
      90.32%
    • Coverage
      97.38%
    • Alignment (schematic)

      SEQ ID NO 4
      97.38% cov
      YP_004030911
      100% cov
    • Alignment Length
      186 aa
  • Lactobacillus amylolyticus DSM 11664

    Lactobacillus amylolyticus DSM 11664

    • Public DB hit
      GI:295426367
      ZP_06819021
    • Hit length
      186 aa
    • E Value
      1.65E-74
    • BLAST Score
      283.1 bits
    • Similarity
      89.25%
    • Coverage
      97.38%
    • Alignment (schematic)

      SEQ ID NO 4
      97.38% cov
      ZP_06819021
      100% cov
    • Alignment Length
      186 aa
  • Lactobacillus gasseri JV-V03

    Lactobacillus gasseri JV-V03

    • Public DB hit
      GI:300362608
      ZP_07058784
    • Hit length
      185 aa
    • E Value
      3.58E-74
    • BLAST Score
      282 bits
    • Similarity
      88.52%
    • Coverage
      95.81%
    • Alignment (schematic)

      SEQ ID NO 4
      95.81% cov
      ZP_07058784
      98.92% cov
    • Alignment Length
      183 aa
  • Lactobacillus jensenii 269-3

    Lactobacillus jensenii 269-3

    • Public DB hit
      GI:238855855
      ZP_04646144
    • Hit length
      186 aa
    • E Value
      3.73E-74
    • BLAST Score
      282 bits
    • Similarity
      83.52%
    • Coverage
      95.29%
    • Alignment (schematic)

      SEQ ID NO 4
      95.29% cov
      ZP_04646144
      97.85% cov
    • Alignment Length
      182 aa
  • Lactobacillus gasseri ATCC 33323

    Lactobacillus gasseri ATCC 33323

    • Public DB hit
      GI:116628754
      YP_813926
    • Hit length
      185 aa
    • E Value
      8.25E-74
    • BLAST Score
      280.8 bits
    • Similarity
      88.52%
    • Coverage
      95.81%
    • Alignment (schematic)

      SEQ ID NO 4
      95.81% cov
      YP_813926
      98.92% cov
    • Alignment Length
      183 aa
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
7,617
Type
DNA
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:158967071
      CP000033
    • Hit length
      1,993,560 bp
    • E Value
      0E0
    • BLAST Score
      14,067.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000033
      0.38% cov
    • Alignment Length
      7,617 bp
    • CIGAR string
      7617M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus johnsonii NCC 533

    Lactobacillus johnsonii NCC 533

    • Public DB hit
      GI:41584196
      AE017198
    • Hit length
      1,992,676 bp
    • E Value
      0E0
    • BLAST Score
      3,797.8 bits
    • Similarity
      89.69%
    • Coverage
      39.24%
    • Alignment (schematic)

      SEQ ID NO 5
      39.24% cov
      AE017198
      0.15% cov
    • Alignment Length
      3,017 bp
    • CIGAR string
      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 mismatches: 255 - insertions: 28 - deletions: 28
  • Lactobacillus johnsonii DPC 6026

    Lactobacillus johnsonii DPC 6026

    • Public DB hit
      GI:329666391
      CP002464
    • Hit length
      1,966,342 bp
    • E Value
      5.22E-145
    • BLAST Score
      527.4 bits
    • Similarity
      74.08%
    • Coverage
      20.09%
    • Alignment (schematic)

      SEQ ID NO 5
      20.09% cov
      CP002464
      0.08% cov
    • Alignment Length
      1,601 bp
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
2,539
Type
peptide
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:58337872
      YP_194457
    • Hit length
      2,539 aa
    • E Value
      0E0
    • BLAST Score
      4,719.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_194457
      100% cov
    • Alignment Length
      2,539 aa
    • CIGAR string
      2539M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus acidophilus ATCC 4796

    Lactobacillus acidophilus ATCC 4796

    • Public DB hit
      GI:227904522
      ZP_04022327
    • Hit length
      3,517 aa
    • E Value
      0E0
    • BLAST Score
      4,580.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ZP_04022327
      72.19% cov
    • Alignment Length
      2,539 aa
    • CIGAR string
      N2538M mismatches: 1 - insertions: 0 - deletions: 0
  • Lactobacillus reuteri 100-23

    Lactobacillus reuteri 100-23

    • Public DB hit
      GI:194467659
      ZP_03073646
    • Hit length
      3,787 aa
    • E Value
      0E0
    • BLAST Score
      2,473 bits
    • Similarity
      78.57%
    • Coverage
      88.14%
    • Alignment (schematic)

      SEQ ID NO 6
      88.14% cov
      ZP_03073646
      57.86% cov
    • Alignment Length
      2,258 aa
    • CIGAR string
      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 mismatches: 599 - insertions: 20 - deletions: 67
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
1,773
Type
DNA
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:158967071
      CP000033
    • Hit length
      1,993,560 bp
    • E Value
      0E0
    • BLAST Score
      3,275.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000033
      0.09% cov
    • Alignment Length
      1,773 bp
    • CIGAR string
      1773M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus acidophilus

    Lactobacillus acidophilus

    • Public DB hit
      GI:290048325
      GU474813
      1 of 2 hits reported for Lactobacillus acidophilus.
    • Hit length
      1,776 bp
    • E Value
      0E0
    • BLAST Score
      3,258.6 bits
    • Similarity
      99.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      GU474813
      99.83% cov
    • Alignment Length
      1,773 bp
    • CIGAR string
      279MN287MN443MN761M mismatches: 3 - insertions: 0 - deletions: 0
  • Lactobacillus amylovorus GRL1118

    Lactobacillus amylovorus GRL1118

    • Public DB hit
      GI:327182549
      CP002609
    • Hit length
      1,894,401 bp
    • E Value
      0E0
    • BLAST Score
      1,733.3 bits
    • Similarity
      84.59%
    • Coverage
      99.44%
    • Alignment (schematic)

      SEQ ID NO 7
      99.44% cov
      CP002609
      0.09% cov
    • Alignment Length
      1,784 bp
  • Lactobacillus acidophilus 30SC

    Lactobacillus acidophilus 30SC

    • Public DB hit
      GI:325332286
      CP002559
    • Hit length
      2,078,001 bp
    • E Value
      0E0
    • BLAST Score
      1,733.3 bits
    • Similarity
      84.59%
    • Coverage
      99.44%
    • Alignment (schematic)

      SEQ ID NO 7
      99.44% cov
      CP002559
      0.08% cov
    • Alignment Length
      1,784 bp
  • Lactobacillus amylovorus GRL 1112

    Lactobacillus amylovorus GRL 1112

    • Public DB hit
      GI:312275363
      CP002338
    • Hit length
      2,067,702 bp
    • E Value
      0E0
    • BLAST Score
      1,727.7 bits
    • Similarity
      84.53%
    • Coverage
      99.44%
    • Alignment (schematic)

      SEQ ID NO 7
      99.44% cov
      CP002338
      0.09% cov
    • Alignment Length
      1,784 bp
  • Lactobacillus helveticus H10

    Lactobacillus helveticus H10

    • Public DB hit
      GI:323465557
      CP002429
    • Hit length
      2,145,899 bp
    • E Value
      0E0
    • BLAST Score
      1,722.2 bits
    • Similarity
      84.57%
    • Coverage
      99.44%
    • Alignment (schematic)

      SEQ ID NO 7
      99.44% cov
      CP002429
      0.08% cov
    • Alignment Length
      1,795 bp
  • Lactobacillus crispatus ST1

    Lactobacillus crispatus ST1

    • Public DB hit
      GI:295029968
      FN692037
    • Hit length
      2,043,161 bp
    • E Value
      0E0
    • BLAST Score
      1,666.8 bits
    • Similarity
      83.91%
    • Coverage
      99.94%
    • Alignment (schematic)

      SEQ ID NO 7
      99.94% cov
      FN692037
      0.09% cov
    • Alignment Length
      1,802 bp
  • Lactobacillus kefiranofaciens ZW3

    Lactobacillus kefiranofaciens ZW3

    • Public DB hit
      GI:333956887
      CP002764
    • Hit length
      2,113,023 bp
    • E Value
      0E0
    • BLAST Score
      1,629.9 bits
    • Similarity
      83.48%
    • Coverage
      99.83%
    • Alignment (schematic)

      SEQ ID NO 7
      99.83% cov
      CP002764
      0.08% cov
    • Alignment Length
      1,792 bp
  • Lactobacillus helveticus DPC 4571

    Lactobacillus helveticus DPC 4571

    • Public DB hit
      GI:160347623
      CP000517
    • Hit length
      2,080,931 bp
    • E Value
      0E0
    • BLAST Score
      1,580 bits
    • Similarity
      83.3%
    • Coverage
      99.44%
    • Alignment (schematic)

      SEQ ID NO 7
      99.44% cov
      CP000517
      0.08% cov
    • Alignment Length
      1,802 bp
  • Lactobacillus johnsonii DPC 6026

    Lactobacillus johnsonii DPC 6026

    • Public DB hit
      GI:329666391
      CP002464
    • Hit length
      1,966,342 bp
    • E Value
      0E0
    • BLAST Score
      1,020.5 bits
    • Similarity
      77.74%
    • Coverage
      99.66%
    • Alignment (schematic)

      SEQ ID NO 7
      99.66% cov
      CP002464
      0.09% cov
    • Alignment Length
      1,819 bp
  • Lactobacillus johnsonii NCC 533

    Lactobacillus johnsonii NCC 533

    • Public DB hit
      GI:41584196
      AE017198
    • Hit length
      1,992,676 bp
    • E Value
      0E0
    • BLAST Score
      998.3 bits
    • Similarity
      77.52%
    • Coverage
      99.66%
    • Alignment (schematic)

      SEQ ID NO 7
      99.66% cov
      AE017198
      0.09% cov
    • Alignment Length
      1,819 bp
  • Lactobacillus johnsonii FI9785

    Lactobacillus johnsonii FI9785

    • Public DB hit
      GI:262396937
      FN298497
    • Hit length
      1,755,993 bp
    • E Value
      0E0
    • BLAST Score
      992.8 bits
    • Similarity
      77.45%
    • Coverage
      99.66%
    • Alignment (schematic)

      SEQ ID NO 7
      99.66% cov
      FN298497
      0.1% cov
    • Alignment Length
      1,818 bp
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
591
Type
peptide
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:58336974
      YP_193559
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,236.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_193559
      100% cov
    • Alignment Length
      591 aa
    • CIGAR string
      591M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus acidophilus ATCC 4796

    Lactobacillus acidophilus ATCC 4796

    • Public DB hit
      GI:227903533
      ZP_04021338
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,234.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_04021338
      100% cov
    • Alignment Length
      591 aa
    • CIGAR string
      229MN361M mismatches: 1 - insertions: 0 - deletions: 0
  • Lactobacillus acidophilus

    Lactobacillus acidophilus

    • Public DB hit
      GI:290048326
      ADD22720
      1 of 2 hits reported for Lactobacillus acidophilus.
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,231.5 bits
    • Similarity
      99.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ADD22720
      100% cov
    • Alignment Length
      591 aa
    • CIGAR string
      93MN95MN401M mismatches: 2 - insertions: 0 - deletions: 0
  • Lactobacillus ultunensis DSM 16047

    Lactobacillus ultunensis DSM 16047

    • Public DB hit
      GI:227893163
      ZP_04010968
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,184.5 bits
    • Similarity
      98.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_04010968
      100% cov
    • Alignment Length
      591 aa
  • Lactobacillus amylovorus GRL 1112

    Lactobacillus amylovorus GRL 1112

    • Public DB hit
      GI:315037878
      YP_004031446
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,177.2 bits
    • Similarity
      97.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_004031446
      100% cov
    • Alignment Length
      591 aa
  • Lactobacillus crispatus 125-2-CHN

    Lactobacillus crispatus 125-2-CHN

    • Public DB hit
      GI:256842724
      ZP_05548212
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,172.1 bits
    • Similarity
      97.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_05548212
      100% cov
    • Alignment Length
      591 aa
  • Lactobacillus helveticus H10

    Lactobacillus helveticus H10

    • Public DB hit
      GI:323466962
      ADX70649
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,170.6 bits
    • Similarity
      97.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ADX70649
      100% cov
    • Alignment Length
      591 aa
  • Lactobacillus helveticus DSM 20075

    Lactobacillus helveticus DSM 20075

    • Public DB hit
      GI:260102469
      ZP_05752706
      1 of 2 hits reported for Lactobacillus helveticus DSM 20075.
    • Hit length
      600 aa
    • E Value
      0E0
    • BLAST Score
      1,170.2 bits
    • Similarity
      97.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_05752706
      98.5% cov
    • Alignment Length
      591 aa
  • Lactobacillus crispatus JV-V01

    Lactobacillus crispatus JV-V01

    • Public DB hit
      GI:227877170
      ZP_03995244
      1 of 2 hits reported for Lactobacillus crispatus JV-V01.
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,170.2 bits
    • Similarity
      97.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_03995244
      100% cov
    • Alignment Length
      591 aa
  • Lactobacillus helveticus MTCC 5463

    Lactobacillus helveticus MTCC 5463

    • Public DB hit
      GI:328461849
      EGF34071
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,169.5 bits
    • Similarity
      97.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EGF34071
      100% cov
    • Alignment Length
      591 aa
  • Lactobacillus kefiranofaciens ZW3

    Lactobacillus kefiranofaciens ZW3

    • Public DB hit
      GI:336054508
      YP_004562795
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,166.4 bits
    • Similarity
      96.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_004562795
      100% cov
    • Alignment Length
      591 aa
  • Lactobacillus amylolyticus DSM 11664

    Lactobacillus amylolyticus DSM 11664

    • Public DB hit
      GI:295426412
      ZP_06819062
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,103.2 bits
    • Similarity
      94.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_06819062
      95.94% cov
    • Alignment Length
      591 aa
  • Lactobacillus johnsonii DPC 6026

    Lactobacillus johnsonii DPC 6026

    • Public DB hit
      GI:329667701
      AEB93649
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,065.8 bits
    • Similarity
      92.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AEB93649
      100% cov
    • Alignment Length
      591 aa
  • Lactobacillus gasseri ATCC 33323

    Lactobacillus gasseri ATCC 33323

    • Public DB hit
      GI:116629979
      YP_815151
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,064.7 bits
    • Similarity
      92.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_815151
      100% cov
    • Alignment Length
      591 aa
Occurrence
36 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
1,770
Type
DNA
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:158967071
      CP000033
    • Hit length
      1,993,560 bp
    • E Value
      0E0
    • BLAST Score
      3,269.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000033
      0.09% cov
    • Alignment Length
      1,770 bp
    • CIGAR string
      1770M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus acidophilus 30SC

    Lactobacillus acidophilus 30SC

    • Public DB hit
      GI:325332286
      CP002559
    • Hit length
      2,078,001 bp
    • E Value
      0E0
    • BLAST Score
      2,039.8 bits
    • Similarity
      87.58%
    • Coverage
      99.83%
    • Alignment (schematic)

      SEQ ID NO 9
      99.83% cov
      CP002559
      0.09% cov
    • Alignment Length
      1,780 bp
    • CIGAR string
      11MNMN18MN14MN2MN2MN2MN2MN5MN2MN2MN6MNMN2MN14M2NMN23MN5MN17MN12MN10MDMIMN2MN2MN5MN8MN2MN2MN8MN11MN8MN19MD4MI2MN8MN9MNMN8MN9MNMN5MN5MN5MN5MN14MN2MN2MN4MN11MN3MN14MN11MDM2D3MI2MIMI5MN2MN2MN5MN2MN8MN8MN8M2N19MN11MN5MN2MN2MN5MN10M2N8MN2M2N4MN23MN14MN2MN11MN29MN12MN4MN8MN2MN17MN27MNMN25M2N5MN8MN2M2NMN2MN5MN6MNMN22MI5MD7MN6MNMN11MN13MDMI2MN8MN5MN5MN5MN26MN2MN11MN3MNMN9MNMN2MN2MN3MN10MNMIMD3MN8MD2MI2MN2MN2MN2MN8MN5MN5MN5MN33MIMD6MN5MN5MN17MN8MN29MN2MN11MN8MN2MN24MN2MD2MI5MN5MN8MN2MN6MD2MI11MN2MN11MN26MN2MN5MN5MN8MN14MN2MN8MN44MN2MN9MN7MN2MN35MN2MN26MN5MN2MN5MN2MN11MN8MN11MN5MN11MN8MN8MN2MN2MN20MN2MN2MN6MNMN11MN2MN2MN11MN8MN12MNMN5MN2MN14MN14M2N16MN2MD2MI3MN29MN5MN5MN2M2N4MN17MN6M3H mismatches: 195 - insertions: 13 - deletions: 13
  • Lactobacillus amylovorus GRL 1112

    Lactobacillus amylovorus GRL 1112

    • Public DB hit
      GI:312275363
      CP002338
    • Hit length
      2,067,702 bp
    • E Value
      0E0
    • BLAST Score
      2,028.7 bits
    • Similarity
      87.48%
    • Coverage
      99.83%
    • Alignment (schematic)

      SEQ ID NO 9
      99.83% cov
      CP002338
      0.09% cov
    • Alignment Length
      1,781 bp
    • CIGAR string
      11MNMN18MN14MN2MN2MN5MN5MN2MN2MN6MNMN2MN14M2NMN23MN5MN17MN12MN10MDMIMN2MN2MN5MN8MN2MN2MN8MN11MN8MN19MD4MI2MN8MN9MNMN8MN9MNMN5MN5MN5MN5MN14MN2MN2MN4MN11MN3MN14MN11MDM2D3MI2MIMI5MN2MN2MN5MN2MN8MN8MN8M2N19MN11MN5MN2MN2MN8MN6MDMDMI2MI5MN2M2N4MN23MN29MN20MN8MN12MN4MN8MN2MN17MN27MNMN25M2N5MN8MN2M2NMN2MN5MN6MNMN22MI5MD7MN6MN7MN5MN2MN5MN4M2N2MN8MN5MN5MN5MN26MN2MN11MN3MNMN9MNMN2MN2MN3MN10MNMIMD3MN8MD2MI2MN2MN2MN2MN8MN5MN5MN5MN33MIMD6MN5MN5MN17MN8MN29MN2MN11MN8MN2MN24MN2MD2MI5MN5MN8MN2MN6MD2MI11MN2MN11MN26MN2MN5MN5MN8MN14MN2MN8MN44MN2MN9MN7MN2MN35MN2MN26MN5MN2MN5MN2MN11MN8MN11MN5MN11MN8MN8MN2MN2MN20MN2MN2MN6MNMN11MN2MN2MN11MN8MN12MNMN5MN2MN14MN14M2N16MN2MD2MI3MN29MN5MN5MN2M2N4MN17MN6M3H mismatches: 195 - insertions: 14 - deletions: 14
  • Lactobacillus amylovorus GRL1118

    Lactobacillus amylovorus GRL1118

    • Public DB hit
      GI:327182549
      CP002609
    • Hit length
      1,894,401 bp
    • E Value
      0E0
    • BLAST Score
      2,023.2 bits
    • Similarity
      87.42%
    • Coverage
      99.83%
    • Alignment (schematic)

      SEQ ID NO 9
      99.83% cov
      CP002609
      0.09% cov
    • Alignment Length
      1,781 bp
  • Lactobacillus helveticus H10

    Lactobacillus helveticus H10

    • Public DB hit
      GI:323465557
      CP002429
    • Hit length
      2,145,899 bp
    • E Value
      0E0
    • BLAST Score
      1,869.9 bits
    • Similarity
      86.03%
    • Coverage
      99.44%
    • Alignment (schematic)

      SEQ ID NO 9
      99.44% cov
      CP002429
      0.08% cov
    • Alignment Length
      1,782 bp
  • Lactobacillus kefiranofaciens ZW3

    Lactobacillus kefiranofaciens ZW3

    • Public DB hit
      GI:333956887
      CP002764
    • Hit length
      2,113,023 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      84.59%
    • Coverage
      99.83%
    • Alignment (schematic)

      SEQ ID NO 9
      99.83% cov
      CP002764
      0.08% cov
    • Alignment Length
      1,791 bp
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
590
Type
peptide
Locations
Undetermined

Declared organism:
Lactobacillus acidophilus

Determined organism:
  • Lactobacillus acidophilus NCFM

    Lactobacillus acidophilus NCFM

    • Public DB hit
      GI:58336882
      YP_193467
    • Hit length
      590 aa
    • E Value
      0E0
    • BLAST Score
      1,231.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_193467
      100% cov
    • Alignment Length
      590 aa
    • CIGAR string
      590M mismatches: 0 - insertions: 0 - deletions: 0
  • Lactobacillus acidophilus 30SC

    Lactobacillus acidophilus 30SC

    • Public DB hit
      GI:325956266
      YP_004286876
    • Hit length
      590 aa
    • E Value
      0E0
    • BLAST Score
      1,174.1 bits
    • Similarity
      98.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_004286876
      100% cov
    • Alignment Length
      590 aa
    • CIGAR string
      4MN21MN6MN15MN4MN3MN26MN14MN16MN3MN10M2N17MN19MN4MN33MN29MN6MN5MN9MN4MN3MN4MN29MN3MN3MNMN2MN6MN17MN54MN54MN67MN31MN5M2N16MN9MN mismatches: 38 - insertions: 0 - deletions: 0
  • Lactobacillus amylovorus GRL 1112

    Lactobacillus amylovorus GRL 1112

    • Public DB hit
      GI:315037791
      YP_004031359
    • Hit length
      590 aa
    • E Value
      0E0
    • BLAST Score
      1,173.3 bits
    • Similarity
      98.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_004031359
      100% cov
    • Alignment Length
      590 aa
    • CIGAR string
      4MN21MN6MN15MN4MN3MN26MN14MN16MN3MN10M2N17MN19MN4MN33MN29MN6MN5MN9MN4MN8MN29MN3MN3MNMN2MN6MN5MN11MN54MN54MN67MN31MN5M2N16MN9MN mismatches: 38 - insertions: 0 - deletions: 0
  • Lactobacillus crispatus 125-2-CHN

    Lactobacillus crispatus 125-2-CHN

    • Public DB hit
      GI:256844658
      ZP_05550143
    • Hit length
      593 aa
    • E Value
      0E0
    • BLAST Score
      1,138.3 bits
    • Similarity
      96.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_05550143
      99.49% cov
    • Alignment Length
      590 aa
  • Lactobacillus kefiranofaciens ZW3

    Lactobacillus kefiranofaciens ZW3

    • Public DB hit
      GI:336054625
      YP_004562912
    • Hit length
      590 aa
    • E Value
      0E0
    • BLAST Score
      1,136.7 bits
    • Similarity
      96.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_004562912
      100% cov
    • Alignment Length
      590 aa
  • Lactobacillus crispatus ST1

    Lactobacillus crispatus ST1

    • Public DB hit
      GI:295692420
      YP_003601030
    • Hit length
      590 aa
    • E Value
      0E0
    • BLAST Score
      1,135.6 bits
    • Similarity
      96.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_003601030
      100% cov
    • Alignment Length
      590 aa
  • Lactobacillus crispatus CTV-05

    Lactobacillus crispatus CTV-05

    • Public DB hit
      GI:312984281
      ZP_07791625
    • Hit length
      593 aa
    • E Value
      0E0
    • BLAST Score
      1,133.6 bits
    • Similarity
      96.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_07791625
      99.49% cov
    • Alignment Length
      590 aa
  • Lactobacillus crispatus 214-1

    Lactobacillus crispatus 214-1

    • Public DB hit
      GI:293381913
      ZP_06627881
    • Hit length
      590 aa
    • E Value
      0E0
    • BLAST Score
      1,130.5 bits
    • Similarity
      95.93%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_06627881
      100% cov
    • Alignment Length
      590 aa
  • Lactobacillus crispatus MV-3A-US

    Lactobacillus crispatus MV-3A-US

    • Public DB hit
      GI:262047055
      ZP_06020014
    • Hit length
      590 aa
    • E Value
      0E0
    • BLAST Score
      1,129.8 bits
    • Similarity
      95.93%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_06020014
      100% cov
    • Alignment Length
      590 aa
  • Lactobacillus gasseri ATCC 33323

    Lactobacillus gasseri ATCC 33323

    • Public DB hit
      GI:116629148
      YP_814320
    • Hit length
      596 aa
    • E Value
      0E0
    • BLAST Score
      1,002.3 bits
    • Similarity
      90.17%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_814320
      98.99% cov
    • Alignment Length
      590 aa
  • Lactobacillus gasseri 224-1

    Lactobacillus gasseri 224-1

    • Public DB hit
      GI:282851093
      ZP_06260467
    • Hit length
      590 aa
    • E Value
      0E0
    • BLAST Score
      1,001.9 bits
    • Similarity
      90%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_06260467
      100% cov
    • Alignment Length
      590 aa
  • Lactobacillus gasseri 202-4

    Lactobacillus gasseri 202-4

    • Public DB hit
      GI:238852530
      ZP_04642942
    • Hit length
      590 aa
    • E Value
      0E0
    • BLAST Score
      1,000.7 bits
    • Similarity
      90%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_04642942
      100% cov
    • Alignment Length
      590 aa
  • Lactobacillus gasseri MV-22

    Lactobacillus gasseri MV-22

    • Public DB hit
      GI:311111073
      ZP_07712470
    • Hit length
      571 aa
    • E Value
      0E0
    • BLAST Score
      961.8 bits
    • Similarity
      90.25%
    • Coverage
      95.59%
    • Alignment (schematic)

      SEQ ID NO 10
      95.59% cov
      ZP_07712470
      98.77% cov
    • Alignment Length
      564 aa
Occurrence
39 times in PatSeqDB
Tools
PatSeq Finder

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